BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16233
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DKM|A Chain A, Crystal Structure Of The Hectd1 Cph Domain
Length = 89
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 150 GAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGK 209
GA+V+RGL+W+W +QDG P G + G+ + V W G N YR+G+ GK
Sbjct: 25 GARVTRGLDWKWRDQDGSPQGEGTV-------TGELHNGWIDVTWDAGGSNSYRMGAEGK 77
Query: 210 VDLK 213
DLK
Sbjct: 78 FDLK 81
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 7 GLRVIRGPDWKWXXXXXXXXXXXTXXXXXXXXXXXI-WDLGNKSSCYRVGSENAYDLQV 64
G RV RG DWKW T + WD G +S YR+G+E +DL++
Sbjct: 25 GARVTRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNS-YRMGAEGKFDLKL 82
>pdb|2DK3|A Chain A, Solution Structure Of Mib-Herc2 Domain In Hect Domain
Containing Protein 1
Length = 86
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 150 GAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGK 209
GA+V RGL+W+W +QDG P G + G+ + V W G N YR+G+ GK
Sbjct: 19 GARVIRGLDWKWRDQDGSPQGEGTV-------TGELHNGWIDVTWDAGGSNSYRMGAEGK 71
Query: 210 VDLKCV 215
DLK
Sbjct: 72 FDLKLA 77
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 7 GLRVIRGPDWKWXXXXXXXXXXXTXXXXXXXXXXXI-WDLGNKSSCYRVGSENAYDLQV 64
G RVIRG DWKW T + WD G S+ YR+G+E +DL++
Sbjct: 19 GARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGG-SNSYRMGAEGKFDLKL 76
>pdb|2E5R|A Chain A, Solution Structure Of The Zz Domain Of Dystrobrevin Alpha
(Dystrobrevin-Alpha)
Length = 63
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 67 SGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCY--------HGDEHDI 116
SG G+ H + C C E ++G RY C +C NY LC C+ H ++H +
Sbjct: 3 SGSSGVFH-PVECSYCHSES--MMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQM 57
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|B Chain B, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|D Chain D, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|C Chain C, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|E Chain E, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|F Chain F, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|G Chain G, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|H Chain H, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|I Chain I, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|J Chain J, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|L Chain L, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|K Chain K, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|A Chain A, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|B Chain B, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|D Chain D, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|C Chain C, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|E Chain E, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|F Chain F, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|H Chain H, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|G Chain G, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|I Chain I, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|J Chain J, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|L Chain L, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|K Chain K, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
Length = 359
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 160 EWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGA 219
+W NQ G + ++S+ G +GK + +A ++ IG E ++ G G
Sbjct: 226 QWHNQRDGIAEFANLLSLVTGTLGKFGQDIA-LMAEIGSE------------IRLSGGGG 272
Query: 220 SSMVYKSHLPVLGQTISTGYIFRRGDRVKVITDAKTLQHVQESSKGGWT------PQLLN 273
SS + PV +T+ T R + V++ ++L QE S GW PQ++
Sbjct: 273 SSAMPHKQNPVNAETLVT---LARFNAVQISALHQSLVQEQERSGAGWMLEWLTLPQMVT 329
Query: 274 FLGHTGIV-HRVTEQ 287
G + +V R+ Q
Sbjct: 330 ATGTSLLVAERLAAQ 344
>pdb|1TOT|A Chain A, Zz Domain Of Cbp- A Novel Fold For A Protein Interaction
Module
Length = 52
Score = 35.8 bits (81), Expect = 0.051, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 78 SCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEH 114
+C+ C+ V TR+ C C +YDLC +CY+ H
Sbjct: 8 TCNECKHH----VETRWHCTVCEDYDLCINCYNTKSH 40
>pdb|2DIP|A Chain A, Solution Structure Of The Zz Domain Of Zinc Finger Swim
Domain Containing Protein 2
Length = 98
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 73 KHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAF 120
KH I C+ C+ I G Y C EC Y LC C+ H ++H F
Sbjct: 28 KHLGIPCNNCKQFP--IEGKCYKCTECIEYHLCQECFDSYCH-LSHTF 72
>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1706
Score = 28.5 bits (62), Expect = 8.0, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 169 GKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSM 222
G+TG + +I++ K ++ ++ GK +I R+G +D++ + +G+ S+
Sbjct: 1366 GRTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSL 1419
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,721,362
Number of Sequences: 62578
Number of extensions: 563223
Number of successful extensions: 1231
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 19
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)