BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16233
(464 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1
Length = 954
Score = 336 bits (861), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 180/423 (42%), Positives = 249/423 (58%), Gaps = 30/423 (7%)
Query: 3 NIEIGLRVIRGPDWKWLDEDGGEGGLGTVVAV--------KSNVVSVIWDLGNKSSCYRV 54
++++G+RV+RG DWKW +D GEG +GTVV + V V WD GN+++ YR
Sbjct: 8 SMQVGMRVVRGVDWKWGSQDSGEGNVGTVVEIGRTGSPTTPDKTVVVQWDQGNRTN-YRT 66
Query: 55 GSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEH 114
G + AYDL +YD+ +G++H I CD C+ + I G R+ C C +YDLC CY ++H
Sbjct: 67 GFQGAYDLLLYDNAQIGVRHPNIICDCCK--KHGIRGMRWKCKMCFDYDLCTQCYMNNKH 124
Query: 115 DITHAFYRVDTPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRI 174
D++HAF R +T S + PR+ +I ++G GAKV RG +WEW NQDGG GKTGR+
Sbjct: 125 DLSHAFERYETAHSQPVLVSPRQNLTRITLKGTFQGAKVVRGPDWEWGNQDGGEGKTGRV 184
Query: 175 ISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQT 234
+ I V ++ RSVA V WS G N+YR+G GKVDLKC + YK HLP LG+
Sbjct: 185 VDIRGWDV-ETGRSVASVTWSDGTTNVYRVGHKGKVDLKCTVEASGGFYYKEHLPKLGKP 243
Query: 235 I-------STGYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQ 287
+ + F+ GD+VK + D L+ +QE GGW P++ F+G TG VHR+T++
Sbjct: 244 AELQRKESTDRHPFQHGDKVKCLLDIDILREMQE-GHGGWNPKMAEFIGQTGTVHRITDR 302
Query: 288 TLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDL 347
VRV+F N + +WTF P ALTK++ F GD V I D + K GHGEW MA L
Sbjct: 303 GDVRVQF-NSETRWTFHPGALTKLNTFWVGDVVRVIDDMETVKRFQPGHGEWTDEMAPTL 361
Query: 348 GDIGIVIKVYEDKDVRVAFRKNTWTLSSKCL---------KLIKSNSLSDSTSLEITYRD 398
G IG VIKVY D D+RV+ +WT + CL L+ + + +S S IT +
Sbjct: 362 GHIGKVIKVYGDGDLRVSVGDQSWTFNPACLTAYQRDEEANLMTTENAKESKSTLITVLE 421
Query: 399 YLL 401
LL
Sbjct: 422 KLL 424
>sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus GN=Mib2 PE=2
SV=2
Length = 971
Score = 315 bits (808), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 172/390 (44%), Positives = 233/390 (59%), Gaps = 21/390 (5%)
Query: 4 IEIGLRVIRGPDWKWLDEDGGEG--------GLGTVVAVKSNVVSVIWDLGNKSSCYRVG 55
+++G+RV+RG DWKW +DGGEG G + V V WD G +++ YR G
Sbjct: 9 VQVGMRVVRGMDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTN-YRAG 67
Query: 56 SENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHD 115
+ A+DL +YD+ +GI+H I CD C+ + + G R+ C C +YDLC CY ++HD
Sbjct: 68 YQGAHDLLLYDNAQIGIRHPNIICDCCK--KHGLRGMRWKCRVCFDYDLCTQCYMHNKHD 125
Query: 116 ITHAFYRVDTPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRII 175
+THAF R +T S +L PR+ +I +RG GAKV RG +WEW +QDGG GKTGR++
Sbjct: 126 LTHAFERYETSHSRPVTLSPRQGLPRIPLRGIFQGAKVVRGPDWEWGSQDGGEGKTGRVV 185
Query: 176 SIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTI 235
I V ++ RSVA V W+ G N+YR+G GKVDLKCVG A YK HLP LG+
Sbjct: 186 DIRGWDV-ETGRSVASVTWADGTTNVYRVGHKGKVDLKCVGEAAGGFYYKEHLPKLGKPA 244
Query: 236 -------STGYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQT 288
+ G F+RGD+VK + D L+ +QE GGW P++ F+G G VHR+T++
Sbjct: 245 ELQRRVSADGQPFQRGDKVKCLLDTDVLRDMQE-GHGGWNPRMAEFIGQMGTVHRITDRG 303
Query: 289 LVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLG 348
VRV+F N + +WTF P ALTK + F GD V I D + K GHGEW MA LG
Sbjct: 304 DVRVQF-NHETRWTFHPGALTKHNSFWVGDVVRVIDDLDTVKRLQAGHGEWTDDMAPALG 362
Query: 349 DIGIVIKVYEDKDVRVAFRKNTWTLSSKCL 378
+G V+KV+ D ++RVA WT S CL
Sbjct: 363 RVGKVVKVFGDGNLRVAVGGQRWTFSPACL 392
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 146 GFSIGAKVSRGLNWEWENQDGGPGKTGRIISI-EDGKVGKSYRSVAKVLWSIGKENIYRI 204
G +G +V RG++W+W QDGG G G ++ + G R+V V W G YR
Sbjct: 8 GVQVGMRVVRGMDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVV-VQWDQGTRTNYRA 66
Query: 205 GSYGKVDL 212
G G DL
Sbjct: 67 GYQGAHDL 74
>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus musculus GN=Mib2 PE=1 SV=2
Length = 973
Score = 314 bits (804), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 171/390 (43%), Positives = 233/390 (59%), Gaps = 21/390 (5%)
Query: 4 IEIGLRVIRGPDWKWLDEDGGEG--------GLGTVVAVKSNVVSVIWDLGNKSSCYRVG 55
+++G+RV+RG DWKW +DGGEG G + V V WD G +++ YR G
Sbjct: 9 VQVGMRVVRGMDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTN-YRAG 67
Query: 56 SENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHD 115
+ A+DL +YD+ +GI+H I CD C+ + + G R+ C C +YDLC CY ++HD
Sbjct: 68 YQGAHDLLLYDNAQIGIRHPNIICDCCK--KHGLRGMRWKCRVCFDYDLCTQCYMHNKHD 125
Query: 116 ITHAFYRVDTPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRII 175
+THAF R +T S +L PR+ +I +RG GAKV RG +WEW +QDGG GKTGR++
Sbjct: 126 LTHAFERYETSHSRPVTLSPRQGLPRIPLRGIFQGAKVVRGPDWEWGSQDGGEGKTGRVV 185
Query: 176 SIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTI 235
I V ++ RSVA V W+ G N+YR+G GKVDL+CVG A YK HLP LG+
Sbjct: 186 DIRGWDV-ETGRSVASVTWADGTTNVYRVGHKGKVDLRCVGEAAGGFYYKEHLPKLGKPA 244
Query: 236 -------STGYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQT 288
+ G F+RGD+VK + D L+ +QE GGW P++ F+G G VHR+T++
Sbjct: 245 ELQRRVSADGQPFQRGDKVKCLLDTDVLRDMQE-GHGGWNPRMAEFIGQMGTVHRITDRG 303
Query: 289 LVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLG 348
VRV+F N + +WTF P ALTK + F GD V I D + K GHGEW MA LG
Sbjct: 304 DVRVQF-NHETRWTFHPGALTKHNSFWVGDVVRVIGDLDTVKRLQAGHGEWTDDMAPALG 362
Query: 349 DIGIVIKVYEDKDVRVAFRKNTWTLSSKCL 378
+G V+KV+ D ++RVA WT S CL
Sbjct: 363 RVGKVVKVFGDGNLRVAVGGQRWTFSPSCL 392
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 146 GFSIGAKVSRGLNWEWENQDGGPGKTGRIISI-EDGKVGKSYRSVAKVLWSIGKENIYRI 204
G +G +V RG++W+W QDGG G G ++ + G R+V V W G YR
Sbjct: 8 GVQVGMRVVRGMDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVV-VQWDQGTRTNYRA 66
Query: 205 GSYGKVDL 212
G G DL
Sbjct: 67 GYQGAHDL 74
>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3
Length = 1013
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 180/469 (38%), Positives = 255/469 (54%), Gaps = 32/469 (6%)
Query: 4 IEIGLRVIRGPDWKWLDEDGGEG--------GLGTVVAVKSNVVSVIWDLGNKSSCYRVG 55
+++G+RV+RG DWKW +DGGEG G + V V WD G +++ YR G
Sbjct: 67 VQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVVVQWDQGTRTN-YRAG 125
Query: 56 SENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHD 115
+ A+DL +YD+ +G++H I CD C+ + + G R+ C C +YDLC CY ++H+
Sbjct: 126 YQGAHDLLLYDNAQIGVRHPNIICDCCK--KHGLRGMRWKCRVCLDYDLCTQCYMHNKHE 183
Query: 116 ITHAFYRVDTPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRII 175
+ HAF R +T S +L PR+ +I +RG GAKV RG +WEW +QDGG GK GR++
Sbjct: 184 LAHAFDRYETAHSRPVTLSPRQGLPRIPLRGIFQGAKVVRGPDWEWGSQDGGEGKPGRVV 243
Query: 176 SIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTI 235
I V ++ RSVA V W+ G N+YR+G GKVDLKCVG A YK HLP LG+
Sbjct: 244 DIRGWDV-ETGRSVASVTWADGTTNVYRVGHKGKVDLKCVGEAAGGFYYKDHLPRLGKPA 302
Query: 236 -------STGYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQT 288
+ F+ GD+VK + D L+ +QE GGW P++ F+G TG VHR+T++
Sbjct: 303 ELQRRVSADSQPFQHGDKVKCLLDTDVLREMQE-GHGGWNPRMAEFIGQTGTVHRITDRG 361
Query: 289 LVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLG 348
VRV+F N + +WTF P ALTK F GD V I D + K GHGEW MA LG
Sbjct: 362 DVRVQF-NHETRWTFHPGALTKHHSFWVGDVVRVIGDLDTVKRLQAGHGEWTDDMAPALG 420
Query: 349 DIGIVIKVYEDKDVRVAFRKNTWTLSSKCLKLIKSNSLSDSTSLEITYRDYLLPFLNSQV 408
+G V+KV+ D ++RVA WT S CL + + +L++ R ++
Sbjct: 421 RVGKVVKVFGDGNLRVAVAGQRWTFSPSCLVAYRPE---EDANLDVAER--------ARE 469
Query: 409 NASTQSAPLLNSESPPDVVEEVEAVMREVVRGNPSAVKAFLENNANLID 457
N S+ S L + E ++ EV GN + L +D
Sbjct: 470 NKSSLSVALDKLRAQKSDPEHPGRLVVEVALGNAARALDLLRRRPEQVD 518
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 146 GFSIGAKVSRGLNWEWENQDGGPGKTGRIISI-EDGKVGKSYRSVAKVLWSIGKENIYRI 204
G +G +V RG++W+W QDGG G G ++ + G R+V V W G YR
Sbjct: 66 GVQVGMRVVRGVDWKWGQQDGGEGGVGTVVELGRHGSPSTPDRTVV-VQWDQGTRTNYRA 124
Query: 205 GSYGKVDL 212
G G DL
Sbjct: 125 GYQGAHDL 132
>sp|Q9VUX2|MIB_DROME E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster
GN=mib1 PE=1 SV=3
Length = 1226
Score = 306 bits (784), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/395 (42%), Positives = 228/395 (57%), Gaps = 18/395 (4%)
Query: 6 IGLRVIRGPDWKWLDEDGGEGGLGTVVAVKS-NVVSVIWDLGNKSSCYRVGSENAYDLQV 64
+G RVIRGPDWKW +DGGEG +GTV +S V V+WD G ++ YR AYDL++
Sbjct: 108 VGARVIRGPDWKWNKQDGGEGHVGTVRNFESAEEVVVVWDNGTAAN-YRCAG--AYDLRI 164
Query: 65 YDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVD 124
DS P G+KHE CD C+ + I G R+ C EC NYDLC+ CYHGD+H + H FYR+
Sbjct: 165 LDSAPTGVKHEGTMCDTCRQQP--IFGIRWKCAECINYDLCSICYHGDKHHLRHRFYRIT 222
Query: 125 TPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGK 184
TP L PRR SKK+ RG GA+V RG++W+WE+QDGG G+ G++ I+D
Sbjct: 223 TPGGERTMLEPRRKSKKVLARGIFPGARVVRGVDWQWEDQDGGVGRRGKVNEIQDWS-SA 281
Query: 185 SYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQT--ISTGYIFR 242
S RS A V+W G +N+YR+G G DLK V S VY+ HLP+LG+ + F+
Sbjct: 282 SPRSAAYVIWDNGSKNLYRVGFEGMADLKVVNDAKGSNVYRDHLPLLGENGPGKGPHGFQ 341
Query: 243 RGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWT 302
GD+V V D + +Q +Q GGWT + L + G+V + E + V + N N+WT
Sbjct: 342 IGDKVTVDLDLEIVQSLQH-GHGGWTDGMFECLSNAGMVVGIDEDHDIVVAY-NSGNRWT 399
Query: 303 FDPRALTKVDP-------FVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIK 355
F+P LTKV F GD V D S K +GHGEW AM LG IG V +
Sbjct: 400 FNPAVLTKVSSPTTAPPEFQVGDIVKICSDVESIKILQRGHGEWADAMQLTLGKIGRVQQ 459
Query: 356 VYEDKDVRVAFRKNTWTLSSKCLKLIKSNSLSDST 390
VY D D++V +WT + + + S++ SD +
Sbjct: 460 VYHDNDLKVEVGNTSWTYNPLAVCKVASSTASDGS 494
>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2
SV=1
Length = 1011
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 172/459 (37%), Positives = 246/459 (53%), Gaps = 36/459 (7%)
Query: 6 IGLRVIRGPDWKWLDEDGGEGGLGTVVAVKS-NVVSVIWDLGNKSSCYRVGSENAYDLQV 64
+G RV RGPDWKW +DGGEG +GTV + +S V V+WD G ++ YR AYDL++
Sbjct: 14 VGARVARGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAAN-YRCSG--AYDLRI 70
Query: 65 YDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVD 124
DS P GIKH+ CD C+ + I+G R+ C EC+NYDLC CYHGD+H + H FYR+
Sbjct: 71 MDSAPTGIKHDGTMCDTCRQQP--IIGIRWKCAECTNYDLCTVCYHGDKHHLRHRFYRIT 128
Query: 125 TPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGK 184
TP S L RR SKKI RG GA+V RG++W+WE+QDGG G+ G++ I+D
Sbjct: 129 TPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEIQDWS-AS 187
Query: 185 SYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTIST----GYI 240
S S A VLW G +N+YR+G G DLKCV Y+ H PVLG+ G +
Sbjct: 188 SPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAKGGSFYRDHCPVLGEQNGNRNPGGLL 247
Query: 241 FRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNK 300
GD V + + + +Q +Q GGWT + L TG V + E + V++ + N+
Sbjct: 248 I--GDLVNIDLELEIVQSLQH-GHGGWTDGMFETLTTTGTVCGIDEDHDIVVQYPS-GNR 303
Query: 301 WTFDPRALTKVD----------------PFVAGDFVYFIPDELSAKEHLKGHGEWIAAMA 344
WTF+P LTK + PF GD V D K +GHGEW AM
Sbjct: 304 WTFNPAVLTKANVVRSGDAAQGAEGGTSPFQVGDLVQICYDIERIKLLQRGHGEWAEAML 363
Query: 345 GDLGDIGIVIKVYEDKDVRVAFRKNTWTLSSKCLKLIKS--NSLSDSTSLEITYRDYLLP 402
LG +G V ++Y D D++V +WT + + + S +++S++T ++ LL
Sbjct: 364 PTLGKVGRVQQIYSDNDLKVEVCGTSWTYNPAAVSRVASVGSAISNATGERLS---QLLK 420
Query: 403 FLNSQVNASTQSAPLLNSESPPDVVEEVEAVMREVVRGN 441
L + + L+ + + DV + + + R+ V N
Sbjct: 421 KLFETQESGDLNEELVKAAANGDVAKVDDLLKRQDVDVN 459
>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1
Length = 1030
Score = 288 bits (737), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 157/386 (40%), Positives = 215/386 (55%), Gaps = 27/386 (6%)
Query: 6 IGLRVIRGPDWKWLDEDGGEGGLGTVVAVKS-NVVSVIWDLGNKSSCYRVGSENAYDLQV 64
+G RVIRGPDWKW +DGGEG +GTV + +S V V+WD G ++ YR AYD+++
Sbjct: 14 VGARVIRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAAN-YRCSG--AYDVRI 70
Query: 65 YDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVD 124
DS P GIKH+ CD C+ + I+G R+ C EC+NYDLC +CYHGD+H + H FYR+
Sbjct: 71 LDSAPTGIKHDGTMCDTCRQQP--IIGIRWKCAECTNYDLCTTCYHGDKHHLRHRFYRIT 128
Query: 125 TPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGK 184
TP S L RR SKKI RG G +V RG++W+WE+QDGG G+ G++ I+D
Sbjct: 129 TPGSERVLLESRRKSKKITARGIFAGGRVVRGVDWQWEDQDGGNGRRGKVTEIQDWSAAS 188
Query: 185 SYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYI--FR 242
+ S A VLW G +N+YR+G G DLKCV Y+ H PVLG+ +
Sbjct: 189 PH-SAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAKGGTFYRDHCPVLGEQNGNRNPGGLQ 247
Query: 243 RGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWT 302
GD V + D + +Q +Q GGWT + L TG V + E + V++ + N+WT
Sbjct: 248 IGDLVNIDLDLEIVQSLQH-GHGGWTDGMFETLTTTGTVCGIDEDHDIVVQYPS-GNRWT 305
Query: 303 FDPRALTKVD----------------PFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGD 346
F+P LTK + F+ GD V D K +GHGEW AM
Sbjct: 306 FNPAVLTKANVVRSGEVAAGAEGGSSQFMVGDLVQICYDIDRIKLLQRGHGEWAEAMLPT 365
Query: 347 LGDIGIVIKVYEDKDVRVAFRKNTWT 372
LG +G V ++Y D D++V +WT
Sbjct: 366 LGKVGRVQQIYSDSDLKVEVCGTSWT 391
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 241 FRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNK 300
F GD V++ D ++ +Q G W +L LG G V ++ + ++V E C
Sbjct: 333 FMVGDLVQICYDIDRIKLLQRG-HGEWAEAMLPTLGKVGRVQQIYSDSDLKV--EVCGTS 389
Query: 301 WTFDPRALTKVDP 313
WT++P A+TKV P
Sbjct: 390 WTYNPAAVTKVAP 402
>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1
Length = 1006
Score = 288 bits (736), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 160/397 (40%), Positives = 218/397 (54%), Gaps = 27/397 (6%)
Query: 6 IGLRVIRGPDWKWLDEDGGEGGLGTVVAVKS-NVVSVIWDLGNKSSCYRVGSENAYDLQV 64
+G RV+RGPDWKW +DGGEG +GTV + +S V V+WD G ++ YR AYDL++
Sbjct: 14 VGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAAN-YRCSG--AYDLRI 70
Query: 65 YDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVD 124
DS P GIKH+ CD C+ + I+G R+ C EC+NYDLC CYHGD+H + H FYR+
Sbjct: 71 LDSAPTGIKHDGTMCDTCRQQP--IIGIRWKCAECTNYDLCTVCYHGDKHHLRHRFYRIT 128
Query: 125 TPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGK 184
TP S L RR SKKI RG GA+V RG++W+WE+QDGG G+ G++ I+D
Sbjct: 129 TPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEIQDWS-AS 187
Query: 185 SYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYI--FR 242
S S A VLW G +N+YR+G G DLKCV Y+ H PVLG+ +
Sbjct: 188 SPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAKGGSFYRDHCPVLGEQNGNRNPGGLQ 247
Query: 243 RGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWT 302
GD V + D + +Q +Q GGWT + L TG V + E + V++ + N+WT
Sbjct: 248 IGDLVNIDLDLEIVQSLQH-GHGGWTDGMFETLTTTGTVCGIDEDHDIVVQYPS-GNRWT 305
Query: 303 FDPRALTKVD----------------PFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGD 346
F+P LTK + F GD V D K +GHGEW AM
Sbjct: 306 FNPAVLTKANIVRSGDAAQGAEGGTSQFQVGDLVQVCYDLERIKLLQRGHGEWAEAMLPT 365
Query: 347 LGDIGIVIKVYEDKDVRVAFRKNTWTLSSKCLKLIKS 383
LG +G V ++Y D D++V +WT + + + S
Sbjct: 366 LGKVGRVQQIYSDSDLKVEVCGTSWTYNPAAVSKVAS 402
>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1
Length = 1006
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 159/386 (41%), Positives = 214/386 (55%), Gaps = 27/386 (6%)
Query: 6 IGLRVIRGPDWKWLDEDGGEGGLGTVVAVKS-NVVSVIWDLGNKSSCYRVGSENAYDLQV 64
+G RV+RGPDWKW +DGGEG +GTV + +S V V+WD G ++ YR AYDL++
Sbjct: 14 VGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAAN-YRCSG--AYDLRI 70
Query: 65 YDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVD 124
DS P GIKH+ CD C+ + I+G R+ C EC+NYDLC CYHGD+H + H FYR+
Sbjct: 71 LDSAPTGIKHDGTMCDTCRQQP--IIGIRWKCAECTNYDLCTVCYHGDKHHLRHRFYRIT 128
Query: 125 TPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGK 184
TP S L RR SKKI RG GA+V RG++W+WE+QDGG G+ G++ I+D
Sbjct: 129 TPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEIQDWS-AS 187
Query: 185 SYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYI--FR 242
S S A VLW G +N+YR+G G DLKCV Y+ H PVLG+ +
Sbjct: 188 SPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAKGGSFYRDHCPVLGEQNGNRNPGGLQ 247
Query: 243 RGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWT 302
GD V + D + +Q +Q GGWT + L TG V + E + V++ + N+WT
Sbjct: 248 IGDLVNIDLDLEIVQSLQH-GHGGWTDGMFETLTTTGTVCGIDEDHDIVVQYPS-GNRWT 305
Query: 303 FDPRALTKVD----------------PFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGD 346
F+P LTK + F GD V D K +GHGEW AM
Sbjct: 306 FNPAVLTKANIVRSGDAAQGAEGGTSQFQVGDLVQVCYDLERIKLLQRGHGEWAEAMLPT 365
Query: 347 LGDIGIVIKVYEDKDVRVAFRKNTWT 372
LG +G V ++Y D D++V +WT
Sbjct: 366 LGKVGRVQQIYSDSDLKVEVCGTSWT 391
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 241 FRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNK 300
F+ GD V+V D + ++ +Q G W +L LG G V ++ + ++V E C
Sbjct: 333 FQVGDLVQVCYDLERIKLLQRG-HGEWAEAMLPTLGKVGRVQQIYSDSDLKV--EVCGTS 389
Query: 301 WTFDPRALTKVDP 313
WT++P A++KV P
Sbjct: 390 WTYNPAAVSKVAP 402
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3
Length = 4836
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 4 IEIGLRVIRGPDWKWLDEDGGEGGLGTVVAV--KSNVVSVIWDLGNKSSCYRVGSENAYD 61
++IG RV+RG DWKW D+DG GLG V+ + + V WD G+ +S YR+G E YD
Sbjct: 1868 MKIGTRVMRGVDWKWGDQDGPPPGLGRVIGELGEDGWIRVQWDTGSTNS-YRMGKEGKYD 1926
Query: 62 LQVYD 66
L++ +
Sbjct: 1927 LKLVE 1931
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 147 FSIGAKVSRGLNWEWENQDGGPGKTGRIISI--EDGKVGKSYRSVAKVLWSIGKENIYRI 204
IG +V RG++W+W +QDG P GR+I EDG + +V W G N YR+
Sbjct: 1868 MKIGTRVMRGVDWKWGDQDGPPPGLGRVIGELGEDGWI--------RVQWDTGSTNSYRM 1919
Query: 205 GSYGKVDLKCVGSGASS 221
G GK DLK V SS
Sbjct: 1920 GKEGKYDLKLVELPVSS 1936
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 3 NIEIGLRV-----IRGPDWKWLDEDGGEGGLGTVVAVKSNVVSVIWDLGNKSSCYRVGSE 57
+I+IG +V + P +KW +G V A +N +I D +S + SE
Sbjct: 2639 HIKIGDKVRVKASVTTPKYKW--GSVTHQSVGLVKAFSANGKDIIVDFPQQSHWTGLLSE 2696
Query: 58 NAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDIT 117
V H ++CD CQ I G+R+ C C ++D C +C+ +H+
Sbjct: 2697 MEL---------VPSIHPGVTCDGCQT--FPINGSRFKCRNCDDFDFCETCFKTKKHNTR 2745
Query: 118 HAFYRVDTPTSS 129
H F R++ P S
Sbjct: 2746 HTFGRINEPGQS 2757
>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1
SV=3
Length = 2610
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 136 RRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWS 195
RRL + ++ GA+V RGL+W+W +QDG P G + G+ + V W
Sbjct: 1263 RRLVRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV-------TGELHNGWIDVTWD 1315
Query: 196 IGKENIYRIGSYGKVDLK 213
G N YR+G+ GK DLK
Sbjct: 1316 AGGSNSYRMGAEGKFDLK 1333
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 7 GLRVIRGPDWKWLDEDGGEGGLGTVVAVKSNV-VSVIWDLGNKSSCYRVGSENAYDLQV- 64
G RVIRG DWKW D+DG G GTV N + V WD G +S YR+G+E +DL++
Sbjct: 1277 GARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNS-YRMGAEGKFDLKLA 1335
Query: 65 --YDSGPVG 71
YD V
Sbjct: 1336 PGYDPDTVA 1344
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2
Length = 4834
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 4 IEIGLRVIRGPDWKWLDEDGGEGGLGTVVAV--KSNVVSVIWDLGNKSSCYRVGSENAYD 61
++IG RV+RG DWKW D+DG GLG V+ + + V WD G+ +S YR+G E YD
Sbjct: 1867 MKIGTRVMRGVDWKWGDQDGPPPGLGRVIGELGEDGWIRVQWDTGSTNS-YRMGKEGKYD 1925
Query: 62 LQVYD 66
L++ +
Sbjct: 1926 LKLAE 1930
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 147 FSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGS 206
IG +V RG++W+W +QDG P GR+I G++G+ +V W G N YR+G
Sbjct: 1867 MKIGTRVMRGVDWKWGDQDGPPPGLGRVI----GELGED--GWIRVQWDTGSTNSYRMGK 1920
Query: 207 YGKVDLK 213
GK DLK
Sbjct: 1921 EGKYDLK 1927
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Query: 3 NIEIGLRV-----IRGPDWKWLDEDGGEGGLGTVVAVKSNVVSVIWDLGNKSSCYRVGSE 57
+I+IG +V + P +KW +G V A +N +I D +S + SE
Sbjct: 2638 HIKIGDKVRVKASVTTPKYKW--GSVTHQSVGVVKAFSANGKDIIVDFPQQSHWTGLLSE 2695
Query: 58 NAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDIT 117
V H ++CD CQ I G+R+ C C ++D C +C+ +H+
Sbjct: 2696 MEL---------VPSIHPGVTCDGCQ--MFPINGSRFKCRNCDDFDFCETCFKTKKHNTR 2744
Query: 118 HAFYRVDTPTSST 130
H F R++ P S
Sbjct: 2745 HTFGRINEPGQSA 2757
>sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1
SV=2
Length = 2618
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 136 RRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWS 195
RRL + ++ GA+V RGL+W+W +QDG P G + G+ + V W
Sbjct: 1268 RRLVRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTV-------TGELHNGWIDVTWD 1320
Query: 196 IGKENIYRIGSYGKVDLK 213
G N YR+G+ GK DLK
Sbjct: 1321 AGGSNSYRMGAEGKFDLK 1338
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 7 GLRVIRGPDWKWLDEDGGEGGLGTVVAVKSNV-VSVIWDLGNKSSCYRVGSENAYDLQV- 64
G RVIRG DWKW D+DG G GTV N + V WD G +S YR+G+E +DL++
Sbjct: 1282 GARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNS-YRMGAEGKFDLKLA 1340
Query: 65 --YDSGPVG 71
YD V
Sbjct: 1341 PGYDPDTVA 1349
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster
GN=HERC2 PE=1 SV=3
Length = 4912
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 4 IEIGLRVIRGPDWKWLDEDGGEGGLGTVVAV--KSNVVSVIWDLGNKSSCYRVGSENAYD 61
++IG R++RG DWKW D+DG G G +++ + V V W G +S YR+G E YD
Sbjct: 1925 MKIGTRIVRGADWKWGDQDGNPPGEGRIISEVGEDGWVRVEWYTGATNS-YRMGKEGQYD 1983
Query: 62 LQVYDSG 68
LQ+ DS
Sbjct: 1984 LQLADSA 1990
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 137 RLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISI--EDGKVGKSYRSVAKVLW 194
+LS + IG ++ RG +W+W +QDG P GRIIS EDG V +V W
Sbjct: 1915 QLSGPDLAKLMKIGTRIVRGADWKWGDQDGNPPGEGRIISEVGEDGWV--------RVEW 1966
Query: 195 SIGKENIYRIGSYGKVDLKCVGSG 218
G N YR+G G+ DL+ S
Sbjct: 1967 YTGATNSYRMGKEGQYDLQLADSA 1990
>sp|Q9BVR0|HRC23_HUMAN Putative HERC2-like protein 3 OS=Homo sapiens GN=HERC2P3 PE=5 SV=2
Length = 1158
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 4 IEIGLRVIRGPDWKWLDEDGGEGGLGTVVAV--KSNVVSVIWDLGNKSSCYRVGSENAYD 61
++IG RV+RG DWKW D+D GLG V+ + + V WD G+ +S YR+G E YD
Sbjct: 595 MKIGTRVMRGVDWKWGDQDRPPPGLGRVIGELGEDGWIRVQWDTGSTNS-YRMGKEGNYD 653
Query: 62 LQVYD 66
L++ +
Sbjct: 654 LKLAE 658
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 147 FSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGS 206
IG +V RG++W+W +QD P GR+I G++G+ +V W G N YR+G
Sbjct: 595 MKIGTRVMRGVDWKWGDQDRPPPGLGRVI----GELGED--GWIRVQWDTGSTNSYRMGK 648
Query: 207 YGKVDLK 213
G DLK
Sbjct: 649 EGNYDLK 655
>sp|Q7T321|KCMF1_DANRE E3 ubiquitin-protein ligase KCMF1 OS=Danio rerio GN=kcmf1 PE=2 SV=1
Length = 383
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 73 KHETISCDACQDERSCIVGTRYSCIECSNYDLCASCY--------HGDEHDITHAFYRVD 124
+HE +SCDAC + G RY C+ C +YDLCASCY H EH + RVD
Sbjct: 3 RHEGVSCDACL--KGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTEHPMQCILTRVD 60
>sp|P34664|YOY6_CAEEL Uncharacterized protein ZK652.6 OS=Caenorhabditis elegans
GN=ZK652.6 PE=4 SV=2
Length = 575
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 69 PVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCY----HGDEHDI 116
P+ HE +SCD C + G RY C+ CS+YDLC SC+ +GD+ I
Sbjct: 4 PLTGTHEGVSCDGCA--FTAFAGNRYKCLRCSDYDLCFSCFTTKNYGDQQTI 53
>sp|Q24629|REF2P_DROSI Protein ref(2)P OS=Drosophila simulans GN=ref(2)P PE=4 SV=1
Length = 599
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 55 GSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEH 114
S NA V D I H+++ CD C + ++G RY C++CSN+DLC C +H
Sbjct: 104 SSANAEAPSVDDPSNFTI-HDSVQCDGCG--LAPLIGFRYKCVQCSNFDLCQKCESAHKH 160
Query: 115 DITHAFYRVDT 125
H R+ T
Sbjct: 161 P-EHLMLRMPT 170
>sp|P14199|REF2P_DROME Protein ref(2)P OS=Drosophila melanogaster GN=ref(2)P PE=1 SV=2
Length = 599
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 74 HETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDT 125
H+ + CD C + ++G RY C++CSNYDLC C +H H R+ T
Sbjct: 122 HDAVECDGCG--LAPLIGFRYKCVQCSNYDLCQKCELAHKHP-EHLMLRMPT 170
>sp|Q6GPB6|KCMF1_XENLA E3 ubiquitin-protein ligase KCMF1 OS=Xenopus laevis GN=kcmf1 PE=2
SV=1
Length = 381
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 73 KHETISCDACQDERSCIVGTRYSCIECSNYDLCASCY--------HGDEHDITHAFYRVD 124
+HE +SCDAC + G RY C+ C +YDLCASCY H +H + RVD
Sbjct: 3 RHEGVSCDACL--KGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTDHPMQCILTRVD 60
>sp|Q9P0J7|KCMF1_HUMAN E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens GN=KCMF1 PE=1
SV=2
Length = 381
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 73 KHETISCDACQDERSCIVGTRYSCIECSNYDLCASCY--------HGDEHDITHAFYRVD 124
+HE +SCDAC + G RY C+ C +YDLCASCY H +H + RVD
Sbjct: 3 RHEGVSCDACL--KGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTDHPMQCILTRVD 60
>sp|Q1LZE1|KCMF1_BOVIN E3 ubiquitin-protein ligase KCMF1 OS=Bos taurus GN=KCMF1 PE=2 SV=1
Length = 381
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 73 KHETISCDACQDERSCIVGTRYSCIECSNYDLCASCY--------HGDEHDITHAFYRVD 124
+HE +SCDAC + G RY C+ C +YDLCASCY H +H + RVD
Sbjct: 3 RHEGVSCDACL--KGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTDHPMQCILTRVD 60
>sp|Q80UY2|KCMF1_MOUSE E3 ubiquitin-protein ligase KCMF1 OS=Mus musculus GN=Kcmf1 PE=2
SV=1
Length = 381
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 73 KHETISCDACQDERSCIVGTRYSCIECSNYDLCASCY--------HGDEHDITHAFYRVD 124
+HE +SCDAC + G RY C+ C +YDLCASCY H +H + RVD
Sbjct: 3 RHEGVSCDACL--KGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTDHPMQCILTRVD 60
>sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B OS=Drosophila melanogaster GN=Dys PE=1 SV=3
Length = 1669
Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 73 KHETISCDACQDERSCIVGTRYSCIECSNYDLCASCY----HGDEHDITHAFYRVDTPTS 128
KH+ C+ C++ IVG RY C++C N+D+C C+ + H +TH + T T+
Sbjct: 1279 KHQA-KCNICKEYP--IVGFRYRCLKCFNFDMCQKCFFFGRNAKNHKLTHPMHEYCTTTT 1335
Query: 129 ST 130
ST
Sbjct: 1336 ST 1337
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophila melanogaster GN=Dys PE=1
SV=3
Length = 3598
Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 73 KHETISCDACQDERSCIVGTRYSCIECSNYDLCASCY----HGDEHDITHAFYRVDTPTS 128
KH+ C+ C++ IVG RY C++C N+D+C C+ + H +TH + T T+
Sbjct: 3107 KHQA-KCNICKEYP--IVGFRYRCLKCFNFDMCQKCFFFGRNAKNHKLTHPMHEYCTTTT 3163
Query: 129 ST 130
ST
Sbjct: 3164 ST 3165
>sp|Q0KI50|DMDD_DROME Dystrophin, isoform D OS=Drosophila melanogaster GN=Dys PE=1 SV=1
Length = 1854
Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 73 KHETISCDACQDERSCIVGTRYSCIECSNYDLCASCY----HGDEHDITHAFYRVDTPTS 128
KH+ C+ C++ IVG RY C++C N+D+C C+ + H +TH + T T+
Sbjct: 1464 KHQA-KCNICKEYP--IVGFRYRCLKCFNFDMCQKCFFFGRNAKNHKLTHPMHEYCTTTT 1520
Query: 129 ST 130
ST
Sbjct: 1521 ST 1522
>sp|Q7YU29|DMDE_DROME Dystrophin, isoform E OS=Drosophila melanogaster GN=Dys PE=1 SV=1
Length = 1051
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 73 KHETISCDACQDERSCIVGTRYSCIECSNYDLCASCY----HGDEHDITHAFYRVDTPTS 128
KH+ C+ C++ IVG RY C++C N+D+C C+ + H +TH + T T+
Sbjct: 661 KHQA-KCNICKE--YPIVGFRYRCLKCFNFDMCQKCFFFGRNAKNHKLTHPMHEYCTTTT 717
Query: 129 ST 130
ST
Sbjct: 718 ST 719
>sp|Q9Y048|DTN1_CAEEL Dystrobrevin-1 OS=Caenorhabditis elegans GN=dyb-1 PE=1 SV=1
Length = 590
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 74 HETISCDACQDERSCIVGTRYSCIECSNYDLCASCY--------HGDEHDI 116
+ + CDACQ RS G RY C C+NY LC SC+ H +EH++
Sbjct: 259 YHPVVCDACQ-VRS-FTGFRYKCQRCANYQLCQSCFWRGRTSQNHSNEHEM 307
>sp|Q5SSH7|ZZEF1_MOUSE Zinc finger ZZ-type and EF-hand domain-containing protein 1 OS=Mus
musculus GN=Zzef1 PE=1 SV=2
Length = 2924
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 77 ISCDACQDERSCIVGTRYSCIECSNYDLCASCY--------HGDEHDITHAFYRVD 124
ISCD C + RY C++CS+ DLC +C+ HGD+H++ + + D
Sbjct: 1779 ISCDGCDE---IAPWHRYRCLQCSDMDLCKTCFLGGVKPEGHGDDHEMVNMEFTCD 1831
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
Query: 71 GIKHETI----SCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDTP 126
G HE + +CD CQ I+G R +C C ++DLC CY ++ H P
Sbjct: 1818 GDDHEMVNMEFTCDHCQ---GLIIGRRMNCNVCDDFDLCYGCYTAKKYSYGH------LP 1868
Query: 127 TSSTASLP 134
T S + P
Sbjct: 1869 THSITAHP 1876
>sp|O43149|ZZEF1_HUMAN Zinc finger ZZ-type and EF-hand domain-containing protein 1 OS=Homo
sapiens GN=ZZEF1 PE=1 SV=6
Length = 2961
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 77 ISCDACQDERSCIVGTRYSCIECSNYDLCASCY--------HGDEHDITHAFYRVD 124
ISCD C + RY C++CS+ DLC +C+ HGD+H++ + + D
Sbjct: 1781 ISCDGCDE---IAPWHRYRCLQCSDMDLCKTCFLGGVKPEGHGDDHEMVNMEFTCD 1833
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
Query: 71 GIKHETI----SCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDTP 126
G HE + +CD CQ I+G R +C C ++DLC CY ++ H P
Sbjct: 1820 GDDHEMVNMEFTCDHCQ---GLIIGRRMNCNVCDDFDLCYGCYAAKKYSYGH------LP 1870
Query: 127 TSSTASLP 134
T S + P
Sbjct: 1871 THSITAHP 1878
>sp|Q8I8V0|TAD2B_DROME Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1
SV=1
Length = 555
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 78 SCDACQDERSCIVGTRYSCIECSNYDLCASCY-HGDE---HDITHAFYRVDTPTS 128
+C CQD+ I G R C EC N+DLC C+ G E H H++ +DT TS
Sbjct: 12 NCTNCQDD---IQGIRVHCAECENFDLCLQCFAAGAEIGAHQNNHSYQFMDTGTS 63
>sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculus GN=Nbr1 PE=1 SV=1
Length = 988
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 77 ISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGD-EHDITHAFYRVDTP 126
I+C CQ IVG RY C C +Y++C C G HD H ++ P
Sbjct: 216 IACSHCQKR---IVGVRYQCSLCPSYNICEDCEAGPYTHDTNHVLLKLRRP 263
>sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NBR1 PE=1 SV=3
Length = 966
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 77 ISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDE-HDITHAFYRVDTP 126
I+C+ CQ IVG RY C C +Y++C C G HD H ++ P
Sbjct: 215 IACNNCQRR---IVGVRYQCSLCPSYNICEDCEAGPYGHDTNHVLLKLRRP 262
>sp|Q54QG5|Y3893_DICDI Probable E3 ubiquitin-protein ligase DDB_G0283893 OS=Dictyostelium
discoideum GN=DDB_G0283893 PE=3 SV=2
Length = 5875
Score = 41.6 bits (96), Expect = 0.012, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 57 ENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDE--H 114
EN D+Q+ D SCD C + I G R++C C ++DLC CY E H
Sbjct: 3216 ENEGDIQMVD-------EVLFSCDLCN--INPITGKRWNCSNCGDFDLCNQCYQNPEKDH 3266
Query: 115 DITHAF--YRVDTP 126
H F + +D P
Sbjct: 3267 PKDHIFKEFIIDEP 3280
>sp|Q5RC94|NBR1_PONAB Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1
Length = 894
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 77 ISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDE-HDITHAFYRVDTP 126
I+C+ CQ IVG RY C C +Y++C C G HD H ++ P
Sbjct: 215 IACNNCQRR---IVGVRYQCSLCPSYNICEDCEAGPYGHDTNHVLLKLRRP 262
>sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norvegicus GN=Nbr1 PE=1 SV=1
Length = 983
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 77 ISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGD-EHDITHAFYRVDTP 126
I+C CQ IVG RY C C +Y++C C G HD H + P
Sbjct: 217 IACSHCQKR---IVGVRYQCSLCPSYNICEDCEAGPYSHDTNHILLKFRRP 264
>sp|Q9P792|YN8B_SCHPO ZZ-type zinc finger-containing protein P35G2.11c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP35G2.11c PE=4 SV=1
Length = 397
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 79 CDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRV 123
CD C+ I RY C C +YD+C SC + H THAF R+
Sbjct: 136 CDHCEQP---IHNVRYKCSVCDDYDICESCLTDNSHSNTHAFVRI 177
Score = 38.9 bits (89), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 74 HETISCDACQDERSCIVGTRYSCIECSNYDLCASC 108
H ++ CD C IVG R+ C+ C +YDLC+SC
Sbjct: 207 HRSVQCDNCLAHP--IVGPRFHCLVCEDYDLCSSC 239
>sp|Q13501|SQSTM_HUMAN Sequestosome-1 OS=Homo sapiens GN=SQSTM1 PE=1 SV=1
Length = 440
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 69 PVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASC 108
P + H + CD C +VGTRY C C +YDLC+ C
Sbjct: 118 PRNMVHPNVICDGCNGP---VVGTRYKCSVCPDYDLCSVC 154
>sp|Q64337|SQSTM_MOUSE Sequestosome-1 OS=Mus musculus GN=Sqstm1 PE=1 SV=1
Length = 442
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 68 GPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASC 108
P + H + CD C +VGTRY C C +YDLC+ C
Sbjct: 117 APRNMVHPNVICDGCNGP---VVGTRYKCSVCPDYDLCSVC 154
>sp|Q5RBA5|SQSTM_PONAB Sequestosome-1 OS=Pongo abelii GN=SQSTM1 PE=2 SV=1
Length = 440
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 69 PVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASC 108
P + H + CD C +VGTRY C C +YDLC+ C
Sbjct: 118 PRNMVHPNVICDGCNGP---VVGTRYKCSVCPDYDLCSVC 154
>sp|B2RWS6|EP300_MOUSE Histone acetyltransferase p300 OS=Mus musculus GN=Ep300 PE=1 SV=1
Length = 2415
Score = 40.0 bits (92), Expect = 0.034, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 78 SCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHD 115
+C+ C+ V TR+ C C +YDLC +CY+ HD
Sbjct: 1668 TCNECKHH----VETRWHCTVCEDYDLCITCYNTKNHD 1701
>sp|Q09472|EP300_HUMAN Histone acetyltransferase p300 OS=Homo sapiens GN=EP300 PE=1 SV=2
Length = 2414
Score = 40.0 bits (92), Expect = 0.034, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 78 SCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHD 115
+C+ C+ V TR+ C C +YDLC +CY+ HD
Sbjct: 1669 TCNECKHH----VETRWHCTVCEDYDLCITCYNTKNHD 1702
>sp|O08623|SQSTM_RAT Sequestosome-1 OS=Rattus norvegicus GN=Sqstm1 PE=1 SV=1
Length = 439
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 74 HETISCDACQDERSCIVGTRYSCIECSNYDLCASC 108
H + CD C +VGTRY C C +YDLC+ C
Sbjct: 120 HPNVICDGCNGP---VVGTRYKCSVCPDYDLCSVC 151
>sp|Q7N8V1|RAPA_PHOLL RNA polymerase-associated protein RapA OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=rapA PE=3
SV=1
Length = 970
Score = 39.3 bits (90), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 17 KWLDEDGGEGGLGTVVAVKSNVVSVIWDLGNKSSCYRVGSENAYDLQVYDSGPVGIKHE- 75
+W+ + E GLGTVVA+ + +V++++ ++ Y +++ +++SG V HE
Sbjct: 8 RWISDTESELGLGTVVALDARMVTLLFPASGENRLY-ARNDSPITRVMFNSGDVVTSHEG 66
Query: 76 -TISCDACQDERSCIV--GTRYSCIE 98
+ D Q E ++ GTR +E
Sbjct: 67 WQLKVDEIQQENGLLIYTGTRLDTLE 92
>sp|Q9D2N4|DTNA_MOUSE Dystrobrevin alpha OS=Mus musculus GN=Dtna PE=1 SV=2
Length = 746
Score = 38.9 bits (89), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 77 ISCDACQDERSCIVGTRYSCIECSNYDLCASCY--------HGDEHDI 116
+ C C E ++G RY C +C NY LC C+ H ++H +
Sbjct: 241 VECSYCHSE--SMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQM 286
>sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1
SV=2
Length = 1625
Score = 38.9 bits (89), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 21/144 (14%)
Query: 230 VLGQTISTGYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTL 289
VL + RG V++ D K + GW Q + +G V V E +
Sbjct: 916 VLANEVVKLIPLDRGQHVRLRADVK-------EPRFGWRGQSRDSVG---TVLCVDEDGI 965
Query: 290 VRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGD 349
+RV F W DP + +V+ F GD+V + SAK G G + G
Sbjct: 966 LRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRQNLTSAKH---GFGSVVP------GS 1016
Query: 350 IGIVIKVYEDKD--VRVAFRKNTW 371
+GIV V D V +++ N W
Sbjct: 1017 MGIVYCVRPDSSLLVELSYLPNPW 1040
>sp|Q9Y4J8|DTNA_HUMAN Dystrobrevin alpha OS=Homo sapiens GN=DTNA PE=1 SV=2
Length = 743
Score = 38.9 bits (89), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 77 ISCDACQDERSCIVGTRYSCIECSNYDLCASCY--------HGDEHDI 116
+ C C E ++G RY C +C NY LC C+ H ++H +
Sbjct: 241 VECSYCHSE--SMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQM 286
>sp|O70585|DTNB_MOUSE Dystrobrevin beta OS=Mus musculus GN=Dtnb PE=1 SV=3
Length = 659
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 77 ISCDACQDERSCIVGTRYSCIECSNYDLCASCY--------HGDEHDI 116
+ C C E ++G RY C +C NY LC +C+ H ++H +
Sbjct: 241 VECSYCHCE--SMMGFRYRCQQCHNYQLCQNCFWRGHASGAHSNQHQM 286
>sp|A2CJ06|DYTN_HUMAN Dystrotelin OS=Homo sapiens GN=DYTN PE=2 SV=1
Length = 578
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 89 IVGTRYSCIECSNYDLCASCY----HGDEHDITH 118
I G RY C++C N+D+C C+ H H +H
Sbjct: 236 ITGLRYRCLKCLNFDICQMCFLSGLHSKSHQKSH 269
>sp|O60941|DTNB_HUMAN Dystrobrevin beta OS=Homo sapiens GN=DTNB PE=1 SV=1
Length = 627
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 77 ISCDACQDERSCIVGTRYSCIECSNYDLCASCY--------HGDEHDI 116
+ C C+ E ++G RY C +C NY LC +C+ H ++H +
Sbjct: 241 VECSYCRCE--SMMGFRYRCQQCHNYQLCQNCFWRGHAGGPHSNQHQM 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,031,217
Number of Sequences: 539616
Number of extensions: 7840851
Number of successful extensions: 19449
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 19258
Number of HSP's gapped (non-prelim): 116
length of query: 464
length of database: 191,569,459
effective HSP length: 121
effective length of query: 343
effective length of database: 126,275,923
effective search space: 43312641589
effective search space used: 43312641589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)