Query psy16233
Match_columns 464
No_of_seqs 281 out of 474
Neff 5.8
Searched_HMMs 29240
Date Sat Aug 17 00:16:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dk3_A E3 ubiquitin-protein li 99.9 4.1E-23 1.4E-27 168.5 4.1 67 2-69 14-81 (86)
2 3dkm_A E3 ubiquitin-protein li 99.8 8.9E-22 3E-26 161.8 3.7 63 2-65 20-83 (89)
3 2dk3_A E3 ubiquitin-protein li 99.8 1.1E-19 3.9E-24 148.2 6.1 75 140-221 9-83 (86)
4 3dkm_A E3 ubiquitin-protein li 99.8 1.1E-19 3.8E-24 149.4 4.1 77 134-217 9-85 (89)
5 2dip_A Zinc finger SWIM domain 99.6 4.9E-17 1.7E-21 137.5 4.2 65 71-138 26-90 (98)
6 2fc7_A ZZZ3 protein; structure 99.6 1.8E-16 6.1E-21 130.0 6.5 66 62-129 7-79 (82)
7 2e5r_A Dystrobrevin alpha; ZZ 99.6 7.5E-17 2.6E-21 126.0 2.7 56 67-125 3-62 (63)
8 1tot_A CREB-binding protein; z 99.3 3E-13 1E-17 101.6 2.1 50 72-127 2-51 (52)
9 2ckk_A KIN17; beta barrel, rib 86.2 3.4 0.00012 35.9 8.9 74 274-367 32-106 (127)
10 1v5n_A PDI-like hypothetical p 83.7 0.34 1.2E-05 39.6 1.2 31 76-110 47-77 (89)
11 2do3_A Transcription elongatio 82.7 0.86 2.9E-05 35.7 3.1 42 297-359 3-44 (69)
12 3i4o_A Translation initiation 71.3 4.6 0.00016 32.3 4.4 53 274-326 13-66 (79)
13 3ny3_A E3 ubiquitin-protein li 70.1 1.8 6.2E-05 34.3 1.8 33 92-125 16-51 (75)
14 3nis_A E3 ubiquitin-protein li 70.1 2.5 8.4E-05 34.1 2.6 49 72-125 4-55 (82)
15 2dgy_A MGC11102 protein; EIF-1 62.7 11 0.00036 32.1 5.2 49 277-325 17-65 (111)
16 1nz9_A Transcription antitermi 62.2 19 0.00065 26.3 6.0 35 313-366 4-39 (58)
17 1d7q_A Translation initiation 61.1 15 0.00051 32.6 6.0 49 277-325 33-81 (143)
18 1ah9_A IF1, initiation factor 58.9 14 0.00049 28.3 5.0 49 277-325 8-57 (71)
19 3p8b_B Transcription antitermi 57.8 19 0.00066 31.5 6.3 55 312-385 90-149 (152)
20 4hcz_A PHD finger protein 1; p 57.0 23 0.00078 26.7 5.5 44 240-303 3-47 (58)
21 2oqk_A Putative translation in 55.7 14 0.00049 31.4 4.9 48 278-325 35-82 (117)
22 2k5h_A Conserved protein; stru 55.6 23 0.00078 29.2 6.0 47 271-324 37-84 (101)
23 2e6z_A Transcription elongatio 55.4 18 0.0006 27.0 4.8 36 239-295 6-41 (59)
24 2exd_A NFED short homolog; mem 52.9 28 0.00095 27.5 5.9 46 271-324 13-58 (80)
25 3cp0_A Membrane protein implic 52.4 25 0.00086 27.4 5.5 53 268-324 18-70 (82)
26 2eqj_A Metal-response element- 52.4 20 0.00067 27.8 4.6 44 240-303 13-57 (66)
27 2do3_A Transcription elongatio 51.9 23 0.00079 27.6 5.0 27 241-287 18-44 (69)
28 2m0o_A PHD finger protein 1; t 51.1 15 0.00053 29.1 3.9 56 299-373 10-70 (79)
29 1jt8_A EIF-1A, probable transl 50.8 8.1 0.00028 32.3 2.5 50 276-325 21-70 (102)
30 2z1c_A Hydrogenase expression/ 48.0 43 0.0015 26.3 6.1 45 274-324 2-46 (75)
31 2zzd_A Thiocyanate hydrolase s 46.6 9.3 0.00032 33.2 2.2 39 238-286 34-72 (126)
32 3h43_A Proteasome-activating n 46.3 57 0.0019 26.0 6.8 50 275-325 18-67 (85)
33 2g3r_A Tumor suppressor P53-bi 44.6 1E+02 0.0035 26.5 8.3 82 278-379 23-107 (123)
34 2eqj_A Metal-response element- 43.4 17 0.00058 28.1 3.0 42 313-373 13-57 (66)
35 2wg5_A General control protein 43.1 69 0.0024 26.6 7.1 51 274-325 36-86 (109)
36 2fhd_A RAD9 homolog, DNA repai 42.7 32 0.0011 30.6 5.1 41 286-329 38-78 (153)
37 3m9b_A Proteasome-associated A 39.9 35 0.0012 32.9 5.3 79 271-361 94-172 (251)
38 3d3r_A Hydrogenase assembly ch 36.5 73 0.0025 26.6 6.1 46 274-323 23-69 (103)
39 3cp0_A Membrane protein implic 34.4 25 0.00087 27.4 2.9 35 340-374 18-52 (82)
40 2ot2_A Hydrogenase isoenzymes 34.0 63 0.0022 26.2 5.2 48 274-324 2-52 (90)
41 1vq8_Q 50S ribosomal protein L 34.0 20 0.0007 29.6 2.3 42 240-294 33-76 (96)
42 2zzd_A Thiocyanate hydrolase s 33.8 18 0.00063 31.4 2.0 38 312-358 35-72 (126)
43 1hr0_W Translation initiation 33.2 9.8 0.00034 29.4 0.2 49 277-325 9-58 (71)
44 1ugp_B NitrIle hydratase beta 31.3 21 0.00071 33.9 2.2 39 238-286 136-174 (226)
45 2jng_A Cullin-7, CUL-7; P53 bi 30.3 76 0.0026 26.6 5.1 53 313-382 21-77 (105)
46 3qyh_B CO-type nitrIle hydrata 29.4 24 0.00081 33.4 2.2 38 239-286 129-166 (219)
47 2e5q_A PHD finger protein 19; 29.4 50 0.0017 25.2 3.5 45 239-303 6-51 (63)
48 2qqr_A JMJC domain-containing 28.8 31 0.0011 29.5 2.7 28 1-35 3-30 (118)
49 3j21_U 50S ribosomal protein L 28.2 58 0.002 27.9 4.3 39 313-371 45-83 (121)
50 2d8v_A Zinc finger FYVE domain 27.7 45 0.0015 25.8 3.1 45 77-127 9-56 (67)
51 3j21_R 50S ribosomal protein L 27.5 32 0.0011 28.5 2.4 36 240-287 34-71 (97)
52 3hht_B NitrIle hydratase beta 27.0 28 0.00095 33.2 2.2 38 239-286 140-177 (229)
53 3h8z_A FragIle X mental retard 26.7 1.9E+02 0.0065 24.9 7.3 75 278-368 19-100 (128)
54 2xdp_A Lysine-specific demethy 26.7 51 0.0018 28.4 3.6 27 2-35 5-31 (123)
55 1dj7_B Ferredoxin thioredoxin 26.4 26 0.0009 27.7 1.6 39 242-286 2-40 (75)
56 3m9b_A Proteasome-associated A 26.2 2.3E+02 0.008 27.2 8.5 75 240-325 134-225 (251)
57 2e5p_A Protein PHF1, PHD finge 25.7 1E+02 0.0036 23.8 4.8 44 240-303 9-53 (68)
58 3fdr_A Tudor and KH domain-con 25.3 1.6E+02 0.0054 23.2 6.2 53 241-312 28-80 (94)
59 3r8s_U 50S ribosomal protein L 25.2 58 0.002 27.1 3.6 37 314-371 4-40 (102)
60 2jz2_A SSL0352 protein; SH3-li 24.6 2.3E+02 0.0079 21.6 6.4 38 273-311 16-55 (66)
61 2k14_A YUAF protein; NFED-like 24.1 1.3E+02 0.0044 23.4 5.4 54 268-324 14-70 (84)
62 3a8g_B NitrIle hydratase subun 23.8 27 0.00092 32.9 1.5 39 238-286 120-159 (212)
63 3u28_C H/ACA ribonucleoprotein 22.9 1.1E+02 0.0037 26.0 4.9 42 276-325 63-104 (114)
64 3izc_U 60S ribosomal protein R 22.7 66 0.0023 28.9 3.7 36 314-360 34-71 (160)
65 2k52_A Uncharacterized protein 22.7 1.9E+02 0.0064 22.0 6.0 43 278-322 10-54 (80)
66 3iz5_Y 60S ribosomal protein L 22.6 1.1E+02 0.0037 27.2 5.0 39 313-371 48-86 (150)
67 2zjr_R 50S ribosomal protein L 22.5 1.2E+02 0.004 25.7 5.1 36 240-296 15-50 (115)
68 2vqe_Q 30S ribosomal protein S 22.1 1.8E+02 0.006 24.3 6.0 44 277-324 6-61 (105)
69 1vq8_Q 50S ribosomal protein L 22.0 67 0.0023 26.5 3.3 42 313-366 33-76 (96)
70 2wfw_A ARC; ATP-binding protei 21.9 1.2E+02 0.0041 27.0 5.2 78 277-366 9-87 (153)
71 3u5e_Y L33, YL33, 60S ribosoma 21.9 1E+02 0.0035 26.6 4.6 40 313-372 49-88 (127)
72 2qcp_X Cation efflux system pr 21.5 1.7E+02 0.0057 22.9 5.5 46 277-324 10-64 (80)
73 3v2d_Y 50S ribosomal protein L 21.4 94 0.0032 26.2 4.2 40 313-372 6-45 (110)
74 1qd7_I S17 ribosomal protein; 21.0 1.7E+02 0.0058 23.7 5.5 44 278-325 6-61 (89)
75 3kbg_A 30S ribosomal protein S 21.0 1.3E+02 0.0044 28.3 5.5 100 242-357 51-163 (213)
76 1mhn_A SurviVal motor neuron p 20.6 2.4E+02 0.0084 20.3 6.2 53 240-311 3-56 (59)
77 3iz5_U 60S ribosomal protein L 20.4 1.2E+02 0.0042 27.3 5.0 44 314-369 34-79 (164)
78 2m0o_A PHD finger protein 1; t 20.3 1.1E+02 0.0038 24.2 4.1 45 239-303 25-70 (79)
No 1
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1
Probab=99.87 E-value=4.1e-23 Score=168.50 Aligned_cols=67 Identities=40% Similarity=0.755 Sum_probs=62.7
Q ss_pred CcccccceeeeCCCCcccCCCCCCCccceEEEEe-cceEEEEecCCCCCCceeecCCCcccccccCCCC
Q psy16233 2 LNIEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVK-SNVVSVIWDLGNKSSCYRVGSENAYDLQVYDSGP 69 (464)
Q Consensus 2 ~~i~~G~rVvRG~dW~w~~qDgg~g~~Gtv~~~~-~~~v~V~Wd~g~~~~~YR~G~~g~~DL~~~d~a~ 69 (464)
.+|++|+||||||||||+|||||+|++|||+++. ++|+.|+||++..| +||+|++|+|||++++.+.
T Consensus 14 ~~i~vG~rVVRG~DWkWgdQDGG~G~~GtV~~~~~~~wv~V~Wd~G~~n-~YR~G~~G~~DL~v~~~~~ 81 (86)
T 2dk3_A 14 KYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSN-SYRMGAEGKFDLKLAPGYS 81 (86)
T ss_dssp GTCCTTSEEEECTTCCSCCTTCSSCCCEEBCSCCCSSEEEEEETTTEEE-EEEBSTTSCBCEEECTTCC
T ss_pred hccccCCEEEeCCCCcccccCCCCCcceEEEEEcCCCEEEEEeCCCCee-eEEecCCCCEEEEEecCCc
Confidence 5799999999999999999999999999999764 89999999999998 8999999999999987764
No 2
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1
Probab=99.83 E-value=8.9e-22 Score=161.77 Aligned_cols=63 Identities=41% Similarity=0.799 Sum_probs=59.2
Q ss_pred CcccccceeeeCCCCcccCCCCCCCccceEEEEe-cceEEEEecCCCCCCceeecCCCccccccc
Q psy16233 2 LNIEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVK-SNVVSVIWDLGNKSSCYRVGSENAYDLQVY 65 (464)
Q Consensus 2 ~~i~~G~rVvRG~dW~w~~qDgg~g~~Gtv~~~~-~~~v~V~Wd~g~~~~~YR~G~~g~~DL~~~ 65 (464)
.+|+||+||||||||+|+||||++|++|||+++. ++|+.|+|+++..+ +||+|++|+|||+++
T Consensus 20 k~i~vG~RVVRGpDWkWgdQDGg~g~~GtV~~~~~~gwv~V~Wd~G~~n-~YR~G~~G~~DL~~a 83 (89)
T 3dkm_A 20 KYMVPGARVTRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSN-SYRMGAEGKFDLKLA 83 (89)
T ss_dssp HHCSTTCEEEECTTCCCTTTTSSTTCCEEECSCCBTTEEEEEETTSCEE-EEEBSGGGCBCEEEC
T ss_pred hccccCcEEEeCCCCcccccCCCCCcccEEeEecCCCeEEEEeCCCCee-eEeecCCCcEeeEEc
Confidence 4799999999999999999999999999999754 89999999999998 999999999999885
No 3
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1
Probab=99.78 E-value=1.1e-19 Score=148.24 Aligned_cols=75 Identities=33% Similarity=0.640 Sum_probs=66.3
Q ss_pred cceecccccccceEEeccCccccccCCCCCCcceEEEccCCccccccceeEEEEeecCCCceEeecCCCeeEEEEecCCC
Q psy16233 140 KKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGA 219 (464)
Q Consensus 140 ~~~~~~gl~~GarVvRg~dW~w~~QDGg~g~~GtV~~i~~w~~~~~~r~~a~V~W~~g~~~~yRvg~~G~~Dl~~~~~~~ 219 (464)
++..+++|++|++|+|||||+|++|||++|++|||+++.. +.++.|+|+++..|+||+|++|+|||++++...
T Consensus 9 r~~~~~~i~vG~rVVRG~DWkWgdQDGG~G~~GtV~~~~~-------~~wv~V~Wd~G~~n~YR~G~~G~~DL~v~~~~~ 81 (86)
T 2dk3_A 9 RSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGELH-------NGWIDVTWDAGGSNSYRMGAEGKFDLKLAPGYS 81 (86)
T ss_dssp SSCGGGTCCTTSEEEECTTCCSCCTTCSSCCCEEBCSCCC-------SSEEEEEETTTEEEEEEBSTTSCBCEEECTTCC
T ss_pred hhhhhhccccCCEEEeCCCCcccccCCCCCcceEEEEEcC-------CCEEEEEeCCCCeeeEEecCCCCEEEEEecCCc
Confidence 3455789999999999999999999999999999987642 356899999999999999999999999998776
Q ss_pred Cc
Q psy16233 220 SS 221 (464)
Q Consensus 220 ~g 221 (464)
+.
T Consensus 82 ~~ 83 (86)
T 2dk3_A 82 GP 83 (86)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 4
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1
Probab=99.77 E-value=1.1e-19 Score=149.36 Aligned_cols=77 Identities=34% Similarity=0.582 Sum_probs=67.3
Q ss_pred CCcccccceecccccccceEEeccCccccccCCCCCCcceEEEccCCccccccceeEEEEeecCCCceEeecCCCeeEEE
Q psy16233 134 PPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLK 213 (464)
Q Consensus 134 ~~r~~~~~~~~~gl~~GarVvRg~dW~w~~QDGg~g~~GtV~~i~~w~~~~~~r~~a~V~W~~g~~~~yRvg~~G~~Dl~ 213 (464)
..|.+.....+++||+|+||+|||||+|++|||++|++|+|+++. .++++.|+|+++..|.||+|++|+|||+
T Consensus 9 ~~~~~~~~q~lk~i~vG~RVVRGpDWkWgdQDGg~g~~GtV~~~~-------~~gwv~V~Wd~G~~n~YR~G~~G~~DL~ 81 (89)
T 3dkm_A 9 SGRENLYFQGLKYMVPGARVTRGLDWKWRDQDGSPQGEGTVTGEL-------HNGWIDVTWDAGGSNSYRMGAEGKFDLK 81 (89)
T ss_dssp -CCCCHHHHHHHHCSTTCEEEECTTCCCTTTTSSTTCCEEECSCC-------BTTEEEEEETTSCEEEEEBSGGGCBCEE
T ss_pred chhHHHHHHHhhccccCcEEEeCCCCcccccCCCCCcccEEeEec-------CCCeEEEEeCCCCeeeEeecCCCcEeeE
Confidence 356666677789999999999999999999999999999998643 2456899999999999999999999999
Q ss_pred EecC
Q psy16233 214 CVGS 217 (464)
Q Consensus 214 ~~~~ 217 (464)
|++.
T Consensus 82 ~a~~ 85 (89)
T 3dkm_A 82 LAPG 85 (89)
T ss_dssp ECTT
T ss_pred Eccc
Confidence 9754
No 5
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.65 E-value=4.9e-17 Score=137.55 Aligned_cols=65 Identities=32% Similarity=0.613 Sum_probs=59.9
Q ss_pred ceeecceEecCCCCCCCeeeccceeecccCCCccccccccCCCCCCcceeeEeecCCCCCCCCCCccc
Q psy16233 71 GIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDTPTSSTASLPPRRL 138 (464)
Q Consensus 71 gv~H~~v~CD~C~~~~~~I~G~RykC~~C~d~DLC~~C~~~~~H~~~H~f~r~~~p~~~~~~~~~r~~ 138 (464)
.+.|+++.||+|...| |.|+||||++|+|||||+.||..+.| +.|+|+++.+|......++.|..
T Consensus 26 ~~~H~gv~Cd~C~~~p--I~G~RykC~~C~d~DLC~~C~~~~~H-~~H~f~~i~~~~~~w~~~e~~~~ 90 (98)
T 2dip_A 26 LDKHLGIPCNNCKQFP--IEGKCYKCTECIEYHLCQECFDSYCH-LSHTFTFREKRNQKWRSLEKRAD 90 (98)
T ss_dssp CSSCCCCCCSSSCCSS--CCSCEEEESSSSSCEEEHHHHHTTSG-GGSCEEECCSSSCCCEECCCCCC
T ss_pred ccccCCCCCcCCCCCC--cccCeEECCCCCCccHHHHHHccCCC-CCCCeeEecCCCCCCcccccccc
Confidence 5789999999999999 99999999999999999999999999 89999999999887777777764
No 6
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.64 E-value=1.8e-16 Score=130.04 Aligned_cols=66 Identities=27% Similarity=0.534 Sum_probs=60.2
Q ss_pred ccccCCCCcceeecceEecCCCCCCCeeeccceeecccCC---CccccccccC----CCCCCcceeeEeecCCCC
Q psy16233 62 LQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSN---YDLCASCYHG----DEHDITHAFYRVDTPTSS 129 (464)
Q Consensus 62 L~~~d~a~~gv~H~~v~CD~C~~~~~~I~G~RykC~~C~d---~DLC~~C~~~----~~H~~~H~f~r~~~p~~~ 129 (464)
|..++++...+.|.++.||+|...| |.|+||||++|+| ||||+.||.. ..|++.|+|.+|..|..+
T Consensus 7 ~~~~~~~~~~~~H~~~~Cd~C~~~p--I~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~p 79 (82)
T 2fc7_A 7 GQQMQAESGFVQHVGFKCDNCGIEP--IQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSGP 79 (82)
T ss_dssp CSSSCSSTTSCEESSCCCSSSCCSS--EESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCCC
T ss_pred hhhhhccccCCeeCcCCCCCCCCCc--ceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCCC
Confidence 6667788888999999999999999 9999999999999 9999999985 689999999999988753
No 7
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=7.5e-17 Score=125.97 Aligned_cols=56 Identities=34% Similarity=0.871 Sum_probs=51.1
Q ss_pred CCCcceeecceEecCCCCCCCeeeccceeecccCCCccccccccCC----CCCCcceeeEeec
Q psy16233 67 SGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGD----EHDITHAFYRVDT 125 (464)
Q Consensus 67 ~a~~gv~H~~v~CD~C~~~~~~I~G~RykC~~C~d~DLC~~C~~~~----~H~~~H~f~r~~~ 125 (464)
+|..++.|+ +.||+|...| |.|.||||++|+|||||+.||..+ .|+++|+|.+|.+
T Consensus 3 s~~~~v~H~-~~Cd~C~~~p--i~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~t 62 (63)
T 2e5r_A 3 SGSSGVFHP-VECSYCHSES--MMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS 62 (63)
T ss_dssp CCSSSCCSC-SCCSSSCCCS--SCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEECC
T ss_pred CCcCCceeC-CCCcCCCCcc--eecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEeC
Confidence 566789999 9999999999 999999999999999999999975 4999999999864
No 8
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=99.32 E-value=3e-13 Score=101.64 Aligned_cols=50 Identities=30% Similarity=0.792 Sum_probs=44.5
Q ss_pred eeecceEecCCCCCCCeeeccceeecccCCCccccccccCCCCCCcceeeEeecCC
Q psy16233 72 IKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDTPT 127 (464)
Q Consensus 72 v~H~~v~CD~C~~~~~~I~G~RykC~~C~d~DLC~~C~~~~~H~~~H~f~r~~~p~ 127 (464)
..|..+.||+|.. . | |+||||++|+|||||..||..+.| .|+|.+|..|.
T Consensus 2 ~~~~~~~Cd~C~~-~--i-g~R~~C~~C~dyDLC~~C~~~~~H--~H~m~~~~~~l 51 (52)
T 1tot_A 2 QDRFVYTCNECKH-H--V-ETRWHCTVCEDYDLCINCYNTKSH--THKMVKWGLGL 51 (52)
T ss_dssp BCSSCEEETTTTE-E--E-SSEEEESSSSSCEECHHHHHHHCC--CSSEEEECSSC
T ss_pred CCcCEEECCCCCC-C--C-cceEEcCCCCCchhHHHHHhCCCC--CCceEEecCCC
Confidence 3567899999999 3 5 999999999999999999999988 79999998764
No 9
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=86.22 E-value=3.4 Score=35.88 Aligned_cols=74 Identities=20% Similarity=0.357 Sum_probs=61.5
Q ss_pred ccCceeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEE
Q psy16233 274 FLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIV 353 (464)
Q Consensus 274 ~lGk~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V 353 (464)
+.++.|+|..|.+++...|...+.+..-......|.-|.| +.|+.|.|.. | +.-|++|++
T Consensus 32 ~y~~KgvV~~V~~~~~c~V~l~~~g~~v~v~q~~LETViP-~~g~~V~Iv~------------G-------~~rG~~g~L 91 (127)
T 2ckk_A 32 YHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIP-APGKRILVLN------------G-------GYRGNEGTL 91 (127)
T ss_dssp GTTCEEEEEEEETTTEEEEEETTTCCEEEEEGGGEEECCC-CTTCEEEECS------------S-------TTTTCEEEE
T ss_pred ccCceEEEEEecCCCeEEEEECCCCCEEEEchHHcEEecC-CCCCEEEEEe------------c-------ccCCcEEEE
Confidence 6789999999988899999997767888888999999999 8999999963 3 344899999
Q ss_pred EEEecC-CCeEEEEe
Q psy16233 354 IKVYED-KDVRVAFR 367 (464)
Q Consensus 354 ~~v~~d-gd~rV~~~ 367 (464)
++++.+ .+..|++.
T Consensus 92 ~~id~~~~~~~V~l~ 106 (127)
T 2ckk_A 92 ESINEKTFSATIVIE 106 (127)
T ss_dssp EEEEGGGTEEEEEEC
T ss_pred EEEeCCCcEEEEEEc
Confidence 999964 46777764
No 10
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=83.66 E-value=0.34 Score=39.59 Aligned_cols=31 Identities=39% Similarity=0.843 Sum_probs=26.7
Q ss_pred ceEecCCCCCCCeeeccceeecccCCCcccccccc
Q psy16233 76 TISCDACQDERSCIVGTRYSCIECSNYDLCASCYH 110 (464)
Q Consensus 76 ~v~CD~C~~~~~~I~G~RykC~~C~d~DLC~~C~~ 110 (464)
...||.|... +.|.+|+|..| ||+|-..|..
T Consensus 47 ~~~C~~C~~~---~~~~~Y~C~~C-~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEE---GTIWSYHCDEC-DFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCC---CCSCEEECTTT-CCCCCHHHHH
T ss_pred CeEeCCCCCc---CCCcEEEcCCC-CCeEcHHhcC
Confidence 3689999984 67999999999 7999999965
No 11
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=82.73 E-value=0.86 Score=35.71 Aligned_cols=42 Identities=33% Similarity=0.539 Sum_probs=33.9
Q ss_pred CCeeEEEccCcceecccccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEEecC
Q psy16233 297 CDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYED 359 (464)
Q Consensus 297 ~~~~wtfnP~~L~kv~~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v~~d 359 (464)
++...+|.+..|+|. |.+||.|+|.. |. .-|.+|-|++|+.|
T Consensus 3 ~~~~i~~p~~~LrK~--F~~GDHVkVi~------------G~-------~~getGlVV~v~~d 44 (69)
T 2do3_A 3 SGSSGEFPAQELRKY--FKMGDHVKVIA------------GR-------FEGDTGLIVRVEEN 44 (69)
T ss_dssp SCSCCCCCCCCCCSS--CCTTCEEEESS------------ST-------TTTCEEEEEEECSS
T ss_pred CCcEEEEcHHHceee--ccCCCeEEEec------------cE-------EcCceEEEEEEeCC
Confidence 467788999999995 99999999974 32 33899999999953
No 12
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=71.34 E-value=4.6 Score=32.31 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=40.5
Q ss_pred ccCceeEEEEEecCcceEEEEecCCeeEEEccCccee-cccccCCCEEEEecCh
Q psy16233 274 FLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTK-VDPFVAGDFVYFIPDE 326 (464)
Q Consensus 274 ~lGk~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~k-v~~~~~GD~V~I~~d~ 326 (464)
.+-..|+|++....+-++|+.++.......=++-+.+ -....+||.|.|..++
T Consensus 13 ~ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~ 66 (79)
T 3i4o_A 13 AIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSP 66 (79)
T ss_dssp CSEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEET
T ss_pred eEEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECc
Confidence 4556799999999999999987633566666666665 4568899999997654
No 13
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=70.15 E-value=1.8 Score=34.30 Aligned_cols=33 Identities=30% Similarity=0.784 Sum_probs=25.6
Q ss_pred cceeecccC---CCccccccccCCCCCCcceeeEeec
Q psy16233 92 TRYSCIECS---NYDLCASCYHGDEHDITHAFYRVDT 125 (464)
Q Consensus 92 ~RykC~~C~---d~DLC~~C~~~~~H~~~H~f~r~~~ 125 (464)
+-|+|..|. ..=||..||....| ..|.+..+..
T Consensus 16 ~~Y~C~~C~~d~tc~lC~~CF~~~~H-~gH~~~~~~s 51 (75)
T 3ny3_A 16 PTYSCRDCAVDPTCVLCMECFLGSIH-RDHRYRMTTS 51 (75)
T ss_dssp EEEEETTTBSSTTCCBCHHHHHTSGG-GGSCEEEEEC
T ss_pred EEEECccCCCCCCeeEChHHCCCCCc-CCceEEEEEc
Confidence 458888884 45689999999998 6888877654
No 14
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=70.14 E-value=2.5 Score=34.13 Aligned_cols=49 Identities=24% Similarity=0.490 Sum_probs=33.3
Q ss_pred eeecceEecCCCCCCCeeeccceeecccC---CCccccccccCCCCCCcceeeEeec
Q psy16233 72 IKHETISCDACQDERSCIVGTRYSCIECS---NYDLCASCYHGDEHDITHAFYRVDT 125 (464)
Q Consensus 72 v~H~~v~CD~C~~~~~~I~G~RykC~~C~---d~DLC~~C~~~~~H~~~H~f~r~~~ 125 (464)
.+|++-.|..=-.. --+-|+|..|. .+=||..||....| ..|.++.+..
T Consensus 4 ~~h~g~~Cg~vf~~----ge~~Y~C~~C~~d~tcvlC~~CF~~s~H-~gH~~~~~~s 55 (82)
T 3nis_A 4 HKHTGRNCGRKFKI----GEPLYRCHECGCDDTCVLCIHCFNPKDH-VNHHVCTDIC 55 (82)
T ss_dssp CCCTTSCCCCBCCT----TCEEEEETTTBSSTTCCBCTTTCCGGGG-TTSCEEEEEC
T ss_pred cccCCCCCCCcccC----CCEEEEeeccCCCCCceEchhhCCCCCc-CCceEEEEEe
Confidence 45777666421111 12569999994 56689999999988 5888877654
No 15
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.67 E-value=11 Score=32.05 Aligned_cols=49 Identities=20% Similarity=0.090 Sum_probs=43.0
Q ss_pred ceeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEecC
Q psy16233 277 HTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPD 325 (464)
Q Consensus 277 k~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~d 325 (464)
.+|+|++..+.+.++|..++.......=|+-+.+..-+..||.|.|...
T Consensus 17 ~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 17 QIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp EEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEEC
T ss_pred EEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEec
Confidence 4799999999999999998867888888888998777899999999653
No 16
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=62.16 E-value=19 Score=26.33 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=27.8
Q ss_pred cccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEEecC-CCeEEEE
Q psy16233 313 PFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYED-KDVRVAF 366 (464)
Q Consensus 313 ~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v~~d-gd~rV~~ 366 (464)
.|.+||.|+|.. | +.-|..|.|.+++.+ +.++|.+
T Consensus 4 ~~~~Gd~V~V~~------------G-------pf~g~~g~v~~v~~~k~~v~V~v 39 (58)
T 1nz9_A 4 AFREGDQVRVVS------------G-------PFADFTGTVTEINPERGKVKVMV 39 (58)
T ss_dssp SCCTTCEEEECS------------G-------GGTTCEEEEEEEETTTTEEEEEE
T ss_pred ccCCCCEEEEee------------c-------CCCCcEEEEEEEcCCCCEEEEEE
Confidence 478999999975 2 445899999999976 5787776
No 17
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=61.14 E-value=15 Score=32.60 Aligned_cols=49 Identities=8% Similarity=-0.091 Sum_probs=43.2
Q ss_pred ceeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEecC
Q psy16233 277 HTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPD 325 (464)
Q Consensus 277 k~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~d 325 (464)
..|+|++..+.+.++|..++.......=|+-+.+..-+..||.|.|...
T Consensus 33 ~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~ 81 (143)
T 1d7q_A 33 EYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLR 81 (143)
T ss_dssp EEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECS
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeec
Confidence 4799999999999999998866788888889999777899999999764
No 18
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=58.94 E-value=14 Score=28.33 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=34.9
Q ss_pred ceeEEEEEecCcceEEEEecCCeeEEEccCcceec-ccccCCCEEEEecC
Q psy16233 277 HTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKV-DPFVAGDFVYFIPD 325 (464)
Q Consensus 277 k~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv-~~~~~GD~V~I~~d 325 (464)
..|+|++..+++-++|..++....-..=|+-+.+- ....+||.|.|...
T Consensus 8 ~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~ 57 (71)
T 1ah9_A 8 MQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELT 57 (71)
T ss_dssp CCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEEC
T ss_pred EEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEe
Confidence 36999999999999999765234444555555542 34569999998653
No 19
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=57.84 E-value=19 Score=31.46 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=41.8
Q ss_pred ccccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEEecC-CCeEEEE----eCceeeecCcceeeeccCC
Q psy16233 312 DPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYED-KDVRVAF----RKNTWTLSSKCLKLIKSNS 385 (464)
Q Consensus 312 ~~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v~~d-gd~rV~~----~g~~w~~np~~lt~~~~~~ 385 (464)
..|.+||.|+|..= +.-|..|.|.+|+.+ +.++|.+ ....-++++.-|.++.+++
T Consensus 90 ~~~~~Gd~VrI~~G-------------------pf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i~~~~ 149 (152)
T 3p8b_B 90 SGLEPGDLVEVIAG-------------------PFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISKLQ 149 (152)
T ss_dssp TTCCTTCEEEECSS-------------------TTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEEECC-
T ss_pred ccCCCCCEEEEeee-------------------cCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEecccc
Confidence 35899999999752 455889999999976 4778887 3446788888888887654
No 20
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=56.98 E-value=23 Score=26.66 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=33.9
Q ss_pred ccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEecCc-ceEEEEecCCeeEEE
Q psy16233 240 IFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQT-LVRVRFENCDNKWTF 303 (464)
Q Consensus 240 ~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~~g-D~rV~~~~~~~~wtf 303 (464)
.|.+|+-|.+. |+|.+.- -|+|++|.... -.-|+|++....|..
T Consensus 3 ~f~~GedVLar----------------wsDG~fY----lGtI~~V~~~~~~clV~F~D~s~~W~~ 47 (58)
T 4hcz_A 3 RLWEGQDVLAR----------------WTDGLLY----LGTIKKVDSAREVCLVQFEDDSQFLVL 47 (58)
T ss_dssp SCCTTCEEEEE----------------CTTSCEE----EEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ccccCCEEEEE----------------ecCCCEE----eEEEEEEecCCCEEEEEEcCCCeEEEE
Confidence 47888888873 6665443 68999999876 899999987777764
No 21
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=55.72 E-value=14 Score=31.39 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=36.3
Q ss_pred eeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEecC
Q psy16233 278 TGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPD 325 (464)
Q Consensus 278 ~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~d 325 (464)
.|+|++..+.+-++|..++....-..=|+-+.+-....+||.|.|...
T Consensus 35 ~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 35 YGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLR 82 (117)
T ss_dssp EEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEEC
T ss_pred EEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEE
Confidence 699999999999999987633445555666665445669999999754
No 22
>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Methanothermobacterthermautotrophicus str}
Probab=55.58 E-value=23 Score=29.24 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=34.7
Q ss_pred hhhccCceeEEEEEec-CcceEEEEecCCeeEEEccCcceecccccCCCEEEEec
Q psy16233 271 LLNFLGHTGIVHRVTE-QTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIP 324 (464)
Q Consensus 271 M~~~lGk~G~V~~I~~-~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~ 324 (464)
....+|+.|+|+.-.. .+.=+|+| .+..|+--. -..+.+|+.|+|..
T Consensus 37 ~~~lIG~~g~V~~~i~~~g~G~V~i--~Ge~W~A~s-----~~~i~~G~~V~Vv~ 84 (101)
T 2k5h_A 37 SDRLIGRKGVVMEAISPQNSGLVKV--DGETWRATS-----GTVLDVGEEVSVKA 84 (101)
T ss_dssp CGGGTTSEEEEEECBCSSSCEEEEE--TTEEEEEEC-----SSCBCTTCEEEEEE
T ss_pred hhhcCCCEEEEeEEccCCCeEEEEE--CCEEEEEEe-----CCcCCCCCEEEEEE
Confidence 4578999999998644 55677888 379998643 23588999999853
No 23
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.37 E-value=18 Score=26.95 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=27.2
Q ss_pred cccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEecCcceEEEEe
Q psy16233 239 YIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFE 295 (464)
Q Consensus 239 ~~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~~gD~rV~~~ 295 (464)
..|.+||.|+|. .|. .-|-.|+|.+|+.+ .++|...
T Consensus 6 ~~f~~GD~V~V~-------------~Gp-------f~g~~G~V~evd~e-~v~V~v~ 41 (59)
T 2e6z_A 6 SGFQPGDNVEVC-------------EGE-------LINLQGKILSVDGN-KITIMPK 41 (59)
T ss_dssp SSCCTTSEEEEC-------------SST-------TTTCEEEECCCBTT-EEEEEEC
T ss_pred ccCCCCCEEEEe-------------ecC-------CCCCEEEEEEEeCC-EEEEEEE
Confidence 348999999996 344 46789999999985 6666653
No 24
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=52.95 E-value=28 Score=27.51 Aligned_cols=46 Identities=22% Similarity=0.371 Sum_probs=32.9
Q ss_pred hhhccCceeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEec
Q psy16233 271 LLNFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIP 324 (464)
Q Consensus 271 M~~~lGk~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~ 324 (464)
....+|+.|+|+.-... .=+|+| .+..|+--.. ..|.+|+.|+|..
T Consensus 13 ~~~liG~~g~v~~~i~~-~G~V~i--~Ge~W~A~s~-----~~i~~G~~V~Vv~ 58 (80)
T 2exd_A 13 TFELKGKVGKVVKIAED-HYLVEV--EGDKWIAYSD-----EKLSLGDRVMVVD 58 (80)
T ss_dssp CCCTTTCEEEEEECCTT-CEEEEE--TTEEEEECCS-----SCCCTTCEEEEEE
T ss_pred hHHccCCEEEEeEecCC-CEEEEE--CCEEEEEEEC-----CccCCCCEEEEEE
Confidence 34679999999885433 456776 3799997432 4688999999853
No 25
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=52.41 E-value=25 Score=27.43 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=35.9
Q ss_pred chhhhhccCceeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEec
Q psy16233 268 TPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIP 324 (464)
Q Consensus 268 ~~~M~~~lGk~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~ 324 (464)
.......+|+.|+|..-...+.=+|+|. +..|+--... .-..+.+|+.|+|..
T Consensus 18 ~~~~~~liG~~~~v~~~i~~~~G~V~~~--G~~W~A~s~~--~~~~i~~G~~V~Vv~ 70 (82)
T 3cp0_A 18 DSSPRALVGHRAEVLEDVGATSGQVRLD--GSIWSARSMD--PTHTFAEGEIVSVID 70 (82)
T ss_dssp --CGGGGTTCEEEEEECBCSSCCEEEET--TEEEEEEESS--TTCCBCTTCEEEEEE
T ss_pred cCChhhcCCCEEEEEEEeCCCCEEEEEC--CEEEEEEECC--CCCccCCCCEEEEEE
Confidence 3445678999999998654455678883 7999875311 013488899999853
No 26
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=52.41 E-value=20 Score=27.76 Aligned_cols=44 Identities=20% Similarity=0.530 Sum_probs=34.7
Q ss_pred ccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEec-CcceEEEEecCCeeEEE
Q psy16233 240 IFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTE-QTLVRVRFENCDNKWTF 303 (464)
Q Consensus 240 ~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~-~gD~rV~~~~~~~~wtf 303 (464)
.|.+||-|+.. |+|.+.- .|+|.+|.. .|-..|+|++....|-.
T Consensus 13 ~f~vGddVLA~----------------wtDGl~Y----~gtI~~V~~~~gtC~V~F~D~s~~w~~ 57 (66)
T 2eqj_A 13 KFEEGQDVLAR----------------WSDGLFY----LGTIKKINILKQSCFIIFEDSSKSWVL 57 (66)
T ss_dssp CSCTTCEEEEE----------------CTTSCEE----EEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred cccCCCEEEEE----------------EccCcEE----EeEEEEEccCCcEEEEEEccCCEEEEE
Confidence 48999999874 6555443 689999998 59999999987777754
No 27
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=51.91 E-value=23 Score=27.57 Aligned_cols=27 Identities=56% Similarity=0.949 Sum_probs=22.2
Q ss_pred cccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEecC
Q psy16233 241 FRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQ 287 (464)
Q Consensus 241 f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~~ 287 (464)
|.+||.|+|. +| ++-|.+|.|++|.++
T Consensus 18 F~~GDHVkVi-------------~G-------~~~getGlVV~v~~d 44 (69)
T 2do3_A 18 FKMGDHVKVI-------------AG-------RFEGDTGLIVRVEEN 44 (69)
T ss_dssp CCTTCEEEES-------------SS-------TTTTCEEEEEEECSS
T ss_pred ccCCCeEEEe-------------cc-------EEcCceEEEEEEeCC
Confidence 8999999996 23 456889999999953
No 28
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=51.13 E-value=15 Score=29.13 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=39.4
Q ss_pred eeEEEccCcceecc--cccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEEecCC-CeEEEE--eCceeee
Q psy16233 299 NKWTFDPRALTKVD--PFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDK-DVRVAF--RKNTWTL 373 (464)
Q Consensus 299 ~~wtfnP~~L~kv~--~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v~~dg-d~rV~~--~g~~w~~ 373 (464)
+.|.=-+.++++.+ .|..|+-|.+. |.|++.- .|+|++|+... .+-|+| +.+.|..
T Consensus 10 ~~~~p~~p~~~~~p~~~f~eGeDVLar---------------wsDGlfY----LGTI~kV~~~~e~ClV~F~D~S~~W~~ 70 (79)
T 2m0o_A 10 SLWDPASPAPTSGPRPRLWEGQDVLAR---------------WTDGLLY----LGTIKKVDSAREVCLVQFEDDSQFLVL 70 (79)
T ss_dssp CCCCCSSCCCCCSCCCCCCTTCEEEBC---------------CTTSCCC----EEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCccCCcceeccCCEEEEE---------------ecCCCEE----eEEEEEeccCCCEEEEEEcCCCeEEEE
Confidence 33444455556554 48899888763 7777775 89999999755 599999 5667764
No 29
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=50.83 E-value=8.1 Score=32.31 Aligned_cols=50 Identities=24% Similarity=0.204 Sum_probs=42.1
Q ss_pred CceeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEecC
Q psy16233 276 GHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPD 325 (464)
Q Consensus 276 Gk~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~d 325 (464)
-..|+|++..+.+.++|..++.......=|+-+.+..-+..||.|.|...
T Consensus 21 e~~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~ 70 (102)
T 1jt8_A 21 EILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPW 70 (102)
T ss_dssp CEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCB
T ss_pred EEEEEEEEEcCCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEec
Confidence 35899999999999999998866777777888888667889999999653
No 30
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=48.03 E-value=43 Score=26.31 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=33.1
Q ss_pred ccCceeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEec
Q psy16233 274 FLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIP 324 (464)
Q Consensus 274 ~lGk~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~ 324 (464)
+||--|+|++| +++-.+|.+ ++.+-.-+-..+ ....+||+|.|..
T Consensus 2 CLaIP~kVvei-~~~~A~vd~--~Gv~r~V~l~Lv---~~~~vGD~VLVH~ 46 (75)
T 2z1c_A 2 CLAVPGKVIEV-NGPVAVVDF--GGVKREVRLDLM---PDTKPGDWVIVHT 46 (75)
T ss_dssp CCSCCEEEEEE-ETTEEEEEE--TTEEEEEECTTS---TTCCTTCEEEEET
T ss_pred cccccEEEEEE-CCCEEEEEc--CCEEEEEEEEEe---CCCCCCCEEEEec
Confidence 57888999999 556677877 466666665555 3468999998854
No 31
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=46.63 E-value=9.3 Score=33.19 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=26.8
Q ss_pred CcccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEec
Q psy16233 238 GYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTE 286 (464)
Q Consensus 238 ~~~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~ 286 (464)
.+.|.+||+|+|..... .+|=. --.-..||+|+|.++.+
T Consensus 34 ~prF~vGDrVrvr~~~p-------~gHtR---lP~YvRGk~G~I~~~~G 72 (126)
T 2zzd_A 34 KSKFNVGDRVRIKDLPD-------LFYTR---TMTYTRGATGTIVRLVY 72 (126)
T ss_dssp SCSSCTTCEEEECCCCC-------SSCCS---SCGGGTTCEEEEEEEEE
T ss_pred CCccCCCCEEEEccCCC-------CCcee---ccHHhCCCEEEEEEEec
Confidence 35699999999974333 11322 12347899999999885
No 32
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=46.29 E-value=57 Score=26.03 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=36.3
Q ss_pred cCceeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEecC
Q psy16233 275 LGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPD 325 (464)
Q Consensus 275 lGk~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~d 325 (464)
---+|.|+++.+++-+-|+-.. +.+|--+-........|.+|++|-+..|
T Consensus 18 P~~vG~v~e~~dd~~~iVkss~-g~~~~V~v~~~Vd~~~LkpG~rVaLn~~ 67 (85)
T 3h43_A 18 PLIVGTVVDKVGERKVVVKSST-GPSFLVNVSHFVNPDDLAPGKRVCLNQQ 67 (85)
T ss_dssp CEEEEEEEEEEETTEEEEEETT-SSEEEEEBCTTSCGGGCCTTCEEEECTT
T ss_pred CceEEEEEEEcCCCEEEEEeCC-CCeEEEEecCccCHHHCCCCCEEEECCc
Confidence 3468999999999988888643 5666555444333456999999999874
No 33
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=44.63 E-value=1e+02 Score=26.50 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=58.9
Q ss_pred eeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEEe
Q psy16233 278 TGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVY 357 (464)
Q Consensus 278 ~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v~ 357 (464)
-|+|++...++.++|.|.+ +..-+..|.-+.-..+|-+|--|.-...- .-...|.|+.+.
T Consensus 23 pG~V~~~~~~~ky~V~FdD-g~~~~v~~k~iiv~d~ip~g~~V~A~ted-------------------dy~~~GiI~~~k 82 (123)
T 2g3r_A 23 SGKITRDVGAGKYKLLFDD-GYECDVLGKDILLCDPIPLDTEVTALSED-------------------EYFSAGVVKGHR 82 (123)
T ss_dssp EEEEEEEEETTEEEEEETT-SCEEEEEGGGEECCSSCCTTCEEEEECTT-------------------SCEEEEEEEEEE
T ss_pred ccEEEEeccCCeEEEEEcC-CCeeEeecceEEEecccCCCcEEEEeecC-------------------ccccceEEEEEe
Confidence 5889999999999999987 88888888877766778889888876522 224588888776
Q ss_pred c-CCCeEEEE--eCceeeecCccee
Q psy16233 358 E-DKDVRVAF--RKNTWTLSSKCLK 379 (464)
Q Consensus 358 ~-dgd~rV~~--~g~~w~~np~~lt 379 (464)
. ++++.-.+ +|+.-.+.-..+.
T Consensus 83 ~~~~e~~Y~Ve~dG~~~~~~~~~vi 107 (123)
T 2g3r_A 83 KESGELYYSIEKEGQRKWYKRMAVI 107 (123)
T ss_dssp EETTEEEEEEEETTEEEEEEGGGEE
T ss_pred cCCCeEEEEEEeCCcEEEEEeeeEE
Confidence 4 44554444 6666666554443
No 34
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=43.42 E-value=17 Score=28.08 Aligned_cols=42 Identities=21% Similarity=0.448 Sum_probs=32.9
Q ss_pred cccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEEec-CCCeEEEE--eCceeee
Q psy16233 313 PFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYE-DKDVRVAF--RKNTWTL 373 (464)
Q Consensus 313 ~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v~~-dgd~rV~~--~g~~w~~ 373 (464)
.|.+||-|+.. |+|++.- .|+|.+|+. .|-+-|+| +.+.|..
T Consensus 13 ~f~vGddVLA~---------------wtDGl~Y----~gtI~~V~~~~gtC~V~F~D~s~~w~~ 57 (66)
T 2eqj_A 13 KFEEGQDVLAR---------------WSDGLFY----LGTIKKINILKQSCFIIFEDSSKSWVL 57 (66)
T ss_dssp CSCTTCEEEEE---------------CTTSCEE----EEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred cccCCCEEEEE---------------EccCcEE----EeEEEEEccCCcEEEEEEccCCEEEEE
Confidence 48899999764 7777665 899999997 49999999 5566653
No 35
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=43.10 E-value=69 Score=26.62 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=37.4
Q ss_pred ccCceeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEecC
Q psy16233 274 FLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPD 325 (464)
Q Consensus 274 ~lGk~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~d 325 (464)
.--.+|+|+++.+++-+-|+.. .+.+|-.+-........|.+|++|-+..+
T Consensus 36 ~P~~Vg~v~e~~d~~~~iVk~s-~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~ 86 (109)
T 2wg5_A 36 PPLLVGVVSDILEDGRVVVKSS-TGPKFVVNTSQYINEEELKPGARVALNQQ 86 (109)
T ss_dssp CCEEEEEEEEECTTSCEEEEET-TSCEEEECBCTTSCTTTCCTTCEEEEETT
T ss_pred CCceEEEEEEEecCCEEEEEeC-CCCEEEEEcccccCHHHCCCCCEEEECCc
Confidence 3456899999999998888863 36666555444444456999999998763
No 36
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=42.68 E-value=32 Score=30.61 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=31.3
Q ss_pred cCcceEEEEecCCeeEEEccCcceecccccCCCEEEEecChHHH
Q psy16233 286 EQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSA 329 (464)
Q Consensus 286 ~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~d~~~v 329 (464)
...-+.|+|+++... +.+-..+.++ .|++||.|+|. ++..+
T Consensus 38 ~~~~y~VrFdDs~~~-~V~~~~vk~L-eLRiGD~VKVd-~vpK~ 78 (153)
T 2fhd_A 38 SSIMYKVQFDDATMS-TVNSNQIKRF-FLKKGDVVQST-RLGKI 78 (153)
T ss_dssp CBCEEEEEETTSCEE-EEETTSEEES-CCCTTCEEEET-TSTTC
T ss_pred CCeEEEEEEcCCCCC-ccChhhceee-eeecCCEEEEC-CCCCc
Confidence 456788999885466 8887777776 59999999998 54443
No 37
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=39.91 E-value=35 Score=32.88 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=53.9
Q ss_pred hhhccCceeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCc
Q psy16233 271 LLNFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDI 350 (464)
Q Consensus 271 M~~~lGk~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~ 350 (464)
+..---.+|+|+++.+++-+-|+. + +..+.-+-..-.....|.+|+.|.+......|+.|- .+..|.+
T Consensus 94 L~sPPL~iGtvlev~dd~~aiV~s-~-Gr~~~V~Vsp~Vd~e~LkPG~rVaLNeSlaVVevLp----------~E~~Gev 161 (251)
T 3m9b_A 94 LGQPPSGYGVLLATHDDDTVDVFT-S-GRKMRLTCSPNIDAASLKKGQTVRLNEALTVVEAGT----------FEAVGEI 161 (251)
T ss_dssp HHSCCEEEEEEEEECSSSCEEEEC-S-SSCCEECBCTTSCTTTSCSSCEEEECTTCCBCCCCC----------CCCCSEE
T ss_pred hcCCCceEEEEEEEcCCCEEEEEe-C-CceEEEEeCCCCCHHHCCCCCEEEeCCccEEEEecC----------CCCcccE
Confidence 334456789999999988888884 2 444433322222223599999999977666666552 3677888
Q ss_pred cEEEEEecCCC
Q psy16233 351 GIVIKVYEDKD 361 (464)
Q Consensus 351 G~V~~v~~dgd 361 (464)
-+|.++..||+
T Consensus 162 ~tv~E~l~d~~ 172 (251)
T 3m9b_A 162 STLREILADGH 172 (251)
T ss_dssp EEEEEECTTSS
T ss_pred EEEEEEecCCC
Confidence 88899887764
No 38
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=36.51 E-value=73 Score=26.58 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=34.1
Q ss_pred ccCceeEEEEEecC-cceEEEEecCCeeEEEccCcceecccccCCCEEEEe
Q psy16233 274 FLGHTGIVHRVTEQ-TLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFI 323 (464)
Q Consensus 274 ~lGk~G~V~~I~~~-gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~ 323 (464)
+||--|+|++|.++ .-.+|.+ ++.+-.-+-.+|.. ...+||+|.|-
T Consensus 23 CLaIP~kVveI~~~~~~A~Vd~--~Gv~reV~l~Lv~e--~~~vGDyVLVH 69 (103)
T 3d3r_A 23 CLSIPSQVVAVDNERQSVTVDT--LGVRRDVSSHLMTE--PLAIGDYVLIH 69 (103)
T ss_dssp EECCCEEEEEEETTTTEEEEEE--TTEEEEEECTTBSS--CCCTTCEEEEE
T ss_pred EEecCEEEEEEeCCCCEEEEEc--CCEEEEEEEEeecC--CCCCCCEEEEe
Confidence 79999999999843 4567776 46777777666631 47789999874
No 39
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=34.39 E-value=25 Score=27.40 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=26.5
Q ss_pred HHHHhhhcCCccEEEEEecCCCeEEEEeCceeeec
Q psy16233 340 IAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTWTLS 374 (464)
Q Consensus 340 ~~~M~~~lG~~G~V~~v~~dgd~rV~~~g~~w~~n 374 (464)
.......+|+.|.|++-..++.=+|+++|..|+--
T Consensus 18 ~~~~~~liG~~~~v~~~i~~~~G~V~~~G~~W~A~ 52 (82)
T 3cp0_A 18 DSSPRALVGHRAEVLEDVGATSGQVRLDGSIWSAR 52 (82)
T ss_dssp --CGGGGTTCEEEEEECBCSSCCEEEETTEEEEEE
T ss_pred cCChhhcCCCEEEEEEEeCCCCEEEEECCEEEEEE
Confidence 34456789999999996555567899999999753
No 40
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=34.04 E-value=63 Score=26.24 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=33.8
Q ss_pred ccCceeEEEEEecCcceEEEEecCCeeEEEccCcceec---ccccCCCEEEEec
Q psy16233 274 FLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKV---DPFVAGDFVYFIP 324 (464)
Q Consensus 274 ~lGk~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv---~~~~~GD~V~I~~ 324 (464)
+||--|+|++|.++. .+|.+ ++.+-.-|-.++.+. +...+||+|.|..
T Consensus 2 CLaIP~kVvei~~~~-A~Vd~--~Gv~r~V~l~Lv~~~~~~~~~~vGD~VLVH~ 52 (90)
T 2ot2_A 2 CIGVPGQIRTIDGNQ-AKVDV--CGIQRDVDLTLVGSCDENGQPRVGQWVLVHV 52 (90)
T ss_dssp CCEEEEEEEEECSSE-EEEEC--SSSEEEEECTTTCSBCTTSCBCTTCEEEEET
T ss_pred ccccceEEEEEcCCc-EEEEc--CCeEEEEEEeeeeccCCCCCCCCCCEEEEec
Confidence 577889999997653 67766 467777776666211 3477999998854
No 41
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=34.01 E-value=20 Score=29.61 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=31.8
Q ss_pred ccccCCEEEEecCHHHHHHhhhcCCCCcchhh--hhccCceeEEEEEecCcceEEEE
Q psy16233 240 IFRRGDRVKVITDAKTLQHVQESSKGGWTPQL--LNFLGHTGIVHRVTEQTLVRVRF 294 (464)
Q Consensus 240 ~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M--~~~lGk~G~V~~I~~~gD~rV~~ 294 (464)
.|.+||.|-|..+... |+| | .-+-|++|+|..++.. .+-|.+
T Consensus 33 ~yk~Gd~VdIk~~~sv----qKG--------mPhk~yHGkTG~V~~v~~~-AvgV~V 76 (96)
T 1vq8_Q 33 EFDDGEKVHLKIDPSV----PNG--------RFHPRFDGQTGTVEGKQGD-AYKVDI 76 (96)
T ss_dssp CCCTTCEEEECCCTTC----CSS--------CCCGGGTTCEEEEEEEETT-EEEEEE
T ss_pred HcCCCCEEEEEecCCc----cCC--------CCcccCCCCCeEEEeECCC-EEEEEE
Confidence 3889999999999884 444 3 2578999999999984 444444
No 42
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=33.76 E-value=18 Score=31.35 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=26.8
Q ss_pred ccccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEEec
Q psy16233 312 DPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYE 358 (464)
Q Consensus 312 ~~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v~~ 358 (464)
..|.+||+|+|..... .+|-. --.-+-|++|+|..+.+
T Consensus 35 prF~vGDrVrvr~~~p------~gHtR---lP~YvRGk~G~I~~~~G 72 (126)
T 2zzd_A 35 SKFNVGDRVRIKDLPD------LFYTR---TMTYTRGATGTIVRLVY 72 (126)
T ss_dssp CSSCTTCEEEECCCCC------SSCCS---SCGGGTTCEEEEEEEEE
T ss_pred CccCCCCEEEEccCCC------CCcee---ccHHhCCCEEEEEEEec
Confidence 3599999999985433 23432 23456799999998875
No 43
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=33.19 E-value=9.8 Score=29.36 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=33.2
Q ss_pred ceeEEEEEecCcceEEEEecCCeeEEEccCccee-cccccCCCEEEEecC
Q psy16233 277 HTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTK-VDPFVAGDFVYFIPD 325 (464)
Q Consensus 277 k~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~k-v~~~~~GD~V~I~~d 325 (464)
..|+|++..+++-++|..++....-+.=|+-+.+ -....+||.|.|...
T Consensus 9 ~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 9 TEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEIT 58 (71)
T ss_dssp CEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECC
T ss_pred EEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEEE
Confidence 4799999999999999876522333333333443 334569999999754
No 44
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=31.25 E-value=21 Score=33.94 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=27.1
Q ss_pred CcccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEec
Q psy16233 238 GYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTE 286 (464)
Q Consensus 238 ~~~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~ 286 (464)
.+.|.+||+|+|...... + |-.- -.-..||+|+|.++.+
T Consensus 136 ~~~F~vGd~Vrv~~~~~~------~-HtR~---P~Y~Rgk~G~I~~~~g 174 (226)
T 1ugp_B 136 PPKFKEGDVVRFSTASPK------G-HARR---ARYVRGKTGTVVKHHG 174 (226)
T ss_dssp CCSCCTTCEEEECCCCCS------S-CCCC---CGGGTTCEEEEEEEEE
T ss_pred CCcCCCCCeEEEccCCCC------C-cccc---cHHhCCCeEEEEEEec
Confidence 456999999999844331 2 3321 2347899999999885
No 45
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=30.26 E-value=76 Score=26.57 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=40.6
Q ss_pred cccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEEecCCCeEEEE----eCceeeecCcceeeec
Q psy16233 313 PFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAF----RKNTWTLSSKCLKLIK 382 (464)
Q Consensus 313 ~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v~~dgd~rV~~----~g~~w~~np~~lt~~~ 382 (464)
.+++|=+||.+.|-|.|+ .|.+|+|+ ++.+|.-.|++ .|.++...=.-+..+.
T Consensus 21 ~l~pGM~VR~~~dyeev~----------------~GD~G~vl-~s~~Gl~~vQv~W~~~G~TyWV~~~~~Ellg 77 (105)
T 2jng_A 21 TLQPGMRVRMLDDYEEIS----------------AGDEGEFR-QSNNGVPPVQVFWESTGRTYWVHWHMLEILG 77 (105)
T ss_dssp HCCTTCEEEECSCBTTBC----------------TTCEEEEE-EECTTSSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred cCCCccEEeeehhhhhhc----------------cCCceeEE-ecCCCCccceeeehhcCceEEEEeehhhhcC
Confidence 388999999999999886 28899999 78999888887 4555555544455444
No 46
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=29.41 E-value=24 Score=33.38 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=26.1
Q ss_pred cccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEec
Q psy16233 239 YIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTE 286 (464)
Q Consensus 239 ~~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~ 286 (464)
+.|.+||+|+|..... .+|=.- -.-+-||+|+|..+.+
T Consensus 129 ~~F~vGd~Vrv~~~~~-------~~HtR~---P~Y~RG~~G~I~~~~g 166 (219)
T 3qyh_B 129 ARFAVGDKVRVLNKNP-------VGHTRM---PRYTRGKVGTVVIDHG 166 (219)
T ss_dssp CCCCTTCEEEECCCCC-------SSCCCS---CGGGTTCEEEEEEEEE
T ss_pred CCCCCCCEEEECCCCC-------CCcccc---cHHHCCCeeEEEEEec
Confidence 5699999999964333 113221 1347899999999875
No 47
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.40 E-value=50 Score=25.15 Aligned_cols=45 Identities=27% Similarity=0.447 Sum_probs=34.3
Q ss_pred cccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEecC-cceEEEEecCCeeEEE
Q psy16233 239 YIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQ-TLVRVRFENCDNKWTF 303 (464)
Q Consensus 239 ~~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~~-gD~rV~~~~~~~~wtf 303 (464)
..|.+|+-|.+. |.|.+.- .|+|.+|..+ .-.-|+|++....|..
T Consensus 6 ~~f~eGqdVLar----------------WsDGlfY----lgtV~kV~~~~~~ClV~FeD~s~~wv~ 51 (63)
T 2e5q_A 6 SGLTEGQYVLCR----------------WTDGLYY----LGKIKRVSSSKQSCLVTFEDNSKYWVL 51 (63)
T ss_dssp CCCCTTCEEEEE----------------CTTSCEE----EEEECCCCSTTSEEEEEETTSCEEEEE
T ss_pred cceecCCEEEEE----------------ecCCCEE----EEEEEEEecCCCEEEEEEccCceeEEE
Confidence 358899998762 7766554 6889999976 5588999987788864
No 48
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=28.84 E-value=31 Score=29.51 Aligned_cols=28 Identities=32% Similarity=0.287 Sum_probs=19.3
Q ss_pred CCcccccceeeeCCCCcccCCCCCCCccceEEEEe
Q psy16233 1 MLNIEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVK 35 (464)
Q Consensus 1 ~~~i~~G~rVvRG~dW~w~~qDgg~g~~Gtv~~~~ 35 (464)
+..|.+|.+|+ -|| ..|.=.-|+|+.+.
T Consensus 3 ~~~v~vGq~V~----akh---~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 3 MQSITAGQKVI----SKH---KNGRFYQCEVVRLT 30 (118)
T ss_dssp SSCCCTTCEEE----EEC---TTSSEEEEEEEEEE
T ss_pred cceeccCCEEE----EEC---CCCCEEeEEEEEEe
Confidence 45689999997 233 34456778888665
No 49
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.25 E-value=58 Score=27.93 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=28.1
Q ss_pred cccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEEecCCCeEEEEeCcee
Q psy16233 313 PFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTW 371 (464)
Q Consensus 313 ~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v~~dgd~rV~~~g~~w 371 (464)
.+..||.|.|..=. .-|+.|+|++|+... -+|-+.|-+.
T Consensus 45 ~IkkGD~V~Vi~Gk-------------------dKGk~GkV~~V~~k~-~~V~VEgvn~ 83 (121)
T 3j21_U 45 PVRVGDKVRIMRGD-------------------YKGHEGKVVEVDLKR-YRIYVEGATL 83 (121)
T ss_dssp ECCSSSEEEECSSS-------------------CSSEEEEEEEEETTT-TEEEETTCEE
T ss_pred ccccCCEEEEeecC-------------------CCCcEeEEEEEEecC-CEEEEeCeEE
Confidence 37799999997632 338999999999744 3566665544
No 50
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=27.67 E-value=45 Score=25.77 Aligned_cols=45 Identities=18% Similarity=0.411 Sum_probs=32.3
Q ss_pred eEecCCCCCCCeeeccceeecccCCCccccccccC---CCCCCcceeeEeecCC
Q psy16233 77 ISCDACQDERSCIVGTRYSCIECSNYDLCASCYHG---DEHDITHAFYRVDTPT 127 (464)
Q Consensus 77 v~CD~C~~~~~~I~G~RykC~~C~d~DLC~~C~~~---~~H~~~H~f~r~~~p~ 127 (464)
..|-.|...- -+||.-|.+-=.|..||.. ..-...|..++|..|.
T Consensus 9 pWC~ICneDA------tlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~~~~ 56 (67)
T 2d8v_A 9 PWCCICNEDA------TLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHPRR 56 (67)
T ss_dssp SSCTTTCSCC------CEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCCCSS
T ss_pred CeeEEeCCCC------eEEecCCCCceehHHHHHHHccchhhhccceeeccCCC
Confidence 3566777754 4899999887789999864 2334678888876664
No 51
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.54 E-value=32 Score=28.48 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=28.8
Q ss_pred ccccCCEEEEecCHHHHHHhhhcCCCCcchhh--hhccCceeEEEEEecC
Q psy16233 240 IFRRGDRVKVITDAKTLQHVQESSKGGWTPQL--LNFLGHTGIVHRVTEQ 287 (464)
Q Consensus 240 ~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M--~~~lGk~G~V~~I~~~ 287 (464)
.|.+||.|-|..+.. .|+| | .-+=|++|+|..+++.
T Consensus 34 ~yk~Gd~VdIk~~gs----vqKG--------mPhk~yHGkTG~V~~vt~~ 71 (97)
T 3j21_R 34 EFEVGQRVHIVIEPS----YHKG--------MPDPRFHGRTGTVVGKRGE 71 (97)
T ss_dssp CCCTTCEEEECCCTT----CCSS--------CCCGGGTTCEEEEEEEETT
T ss_pred HhcCCCEEEEEecCc----eEcC--------CCCcccCCCCeEEEeecCc
Confidence 488999999999887 4444 3 2478999999999984
No 52
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=27.00 E-value=28 Score=33.16 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=26.1
Q ss_pred cccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEec
Q psy16233 239 YIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTE 286 (464)
Q Consensus 239 ~~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~ 286 (464)
+.|.+||+|+|..... .+|=.- -.-+-||+|+|..+.+
T Consensus 140 ~~F~vGd~Vrv~~~~~-------~~HtR~---P~Y~RG~~G~I~~~~g 177 (229)
T 3hht_B 140 PRFKVGERIKTKNIHP-------TGHTRF---PRYARDKYGVIDEVYG 177 (229)
T ss_dssp CSCCTTCEEEECCCCC-------SSCCSC---CGGGTTCEEEEEEEEE
T ss_pred CCCCCCCEEEECCCCC-------CCcccC---cHHHCCCeeEEEEEec
Confidence 5699999999964333 113321 1347899999999874
No 53
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=26.74 E-value=1.9e+02 Score=24.87 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=43.4
Q ss_pred eeEEEEEecCcceEEEEecCCe-eEEEccCcceec------ccccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCc
Q psy16233 278 TGIVHRVTEQTLVRVRFENCDN-KWTFDPRALTKV------DPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDI 350 (464)
Q Consensus 278 ~G~V~~I~~~gD~rV~~~~~~~-~wtfnP~~L~kv------~~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~ 350 (464)
.|+|..|- +..+.|.|++.-+ .=++....++.. ..|++||.|-|-+..+. |+..| |= .
T Consensus 19 ~a~V~~v~-~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d----~ep~g-Ww---------~ 83 (128)
T 3h8z_A 19 KGFVKDVH-EDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANE----QEPCG-WW---------L 83 (128)
T ss_dssp EEEEEEEC-SSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC-------CCCE-EE---------E
T ss_pred EEEEEEEe-CCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCC----CCcCc-cE---------E
Confidence 47888875 5669999975311 012222223322 24999999999775433 34444 43 5
Q ss_pred cEEEEEecCCCeEEEEeC
Q psy16233 351 GIVIKVYEDKDVRVAFRK 368 (464)
Q Consensus 351 G~V~~v~~dgd~rV~~~g 368 (464)
|+|.++.+ .-..|.+.+
T Consensus 84 a~I~~~kg-~f~~V~y~~ 100 (128)
T 3h8z_A 84 ARVRMMKG-DFYVIEYAA 100 (128)
T ss_dssp EEEEEEET-TEEEEEETT
T ss_pred EEEEEeeC-CEEEEEEcC
Confidence 78888874 345666654
No 54
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=26.67 E-value=51 Score=28.38 Aligned_cols=27 Identities=30% Similarity=0.128 Sum_probs=19.6
Q ss_pred CcccccceeeeCCCCcccCCCCCCCccceEEEEe
Q psy16233 2 LNIEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVK 35 (464)
Q Consensus 2 ~~i~~G~rVvRG~dW~w~~qDgg~g~~Gtv~~~~ 35 (464)
..|.+|.+|+ -||. .|.=.-|+|+.+.
T Consensus 5 ~~v~vGq~V~----ak~~---ngryy~~~V~~~~ 31 (123)
T 2xdp_A 5 KVISVGQTVI----TKHR---NTRYYSCRVMAVT 31 (123)
T ss_dssp CCCCTTCCCC----CCCC---CCCCCCCEEEEEE
T ss_pred cccccCCEEE----EECC---CCcEEeEEEEEEe
Confidence 4688999997 3333 4667888999775
No 55
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=26.40 E-value=26 Score=27.68 Aligned_cols=39 Identities=28% Similarity=0.441 Sum_probs=28.1
Q ss_pred ccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEec
Q psy16233 242 RRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTE 286 (464)
Q Consensus 242 ~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~ 286 (464)
++||+|+|....-...-.+.. +.+ ...-|..|.|..|-.
T Consensus 2 k~GdrVrV~~sv~Vyh~P~~r-~~~-----fDl~GmEGeV~~~v~ 40 (75)
T 1dj7_B 2 NVGDRVRVTSSVVVYHHPEHK-KTA-----FDLQGMEGEVAAVLT 40 (75)
T ss_dssp CTTCEEEECSCCEESCCTTST-TSC-----EECTTCEEEEEEECS
T ss_pred CCCCEEEEcccEEEEeCCccC-CCC-----cccccCEEEEEEEEe
Confidence 689999999877776655432 112 246799999999885
No 56
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.18 E-value=2.3e+02 Score=27.15 Aligned_cols=75 Identities=9% Similarity=0.126 Sum_probs=46.3
Q ss_pred ccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEecCc-ceEEEEecCCeeEEEccCcceec-------
Q psy16233 240 IFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQT-LVRVRFENCDNKWTFDPRALTKV------- 311 (464)
Q Consensus 240 ~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~~g-D~rV~~~~~~~~wtfnP~~L~kv------- 311 (464)
.+.+|+.|.+.-....++.| + .+..|.+-+|.++-.+| .+.|.-.....+--.--..|...
T Consensus 134 ~LkPG~rVaLNeSlaVVevL------p-----~E~~Gev~tv~E~l~d~~R~lV~~~~~eerVv~lA~~L~~~~~~~~~~ 202 (251)
T 3m9b_A 134 SLKKGQTVRLNEALTVVEAG------T-----FEAVGEISTLREILADGHRALVVGHADEERVVWLADPLIAEDLPDGLP 202 (251)
T ss_dssp TSCSSCEEEECTTCCBCCCC------C-----CCCCSEEEEEEEECTTSSEEEEECSSSCEEEEECCGGGTCSCCCCCCC
T ss_pred HCCCCCEEEeCCccEEEEec------C-----CCCcccEEEEEEEecCCCEEEEecCCCceEEEEechhhhccccccccc
Confidence 37899999995333333222 1 26788999999999766 44454333234444433334332
Q ss_pred ---------ccccCCCEEEEecC
Q psy16233 312 ---------DPFVAGDFVYFIPD 325 (464)
Q Consensus 312 ---------~~~~~GD~V~I~~d 325 (464)
..+.+||.|.|..-
T Consensus 203 ~~~~~~~~~~~lr~GDsllvD~r 225 (251)
T 3m9b_A 203 EALNDDTRPRKLRPGDSLLVDTK 225 (251)
T ss_dssp SSSCCCCSCCCCCTTCEEEECTT
T ss_pred cccccccccCCCCCCCEEEEeCC
Confidence 15999999999764
No 57
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.68 E-value=1e+02 Score=23.76 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=33.0
Q ss_pred ccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEec-CcceEEEEecCCeeEEE
Q psy16233 240 IFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTE-QTLVRVRFENCDNKWTF 303 (464)
Q Consensus 240 ~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~-~gD~rV~~~~~~~~wtf 303 (464)
.|.+|+-|.+. |.|.+.- .|+|.+|.. ++-.-|+|++....|-.
T Consensus 9 ~f~eGqdVLar----------------WsDGlfY----lGtV~kV~~~~~~ClV~FeD~s~~wv~ 53 (68)
T 2e5p_A 9 RLWEGQDVLAR----------------WTDGLLY----LGTIKKVDSAREVCLVQFEDDSQFLVL 53 (68)
T ss_dssp CCCTTCEEEEE----------------CTTSSEE----EEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred ccccCCEEEEE----------------ecCCcEE----EeEEEEEecCCcEEEEEEccCCeeeee
Confidence 48889988762 7765554 689999997 45588999986777754
No 58
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=25.29 E-value=1.6e+02 Score=23.19 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=40.8
Q ss_pred cccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEecCcceEEEEecCCeeEEEccCcceecc
Q psy16233 241 FRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVD 312 (464)
Q Consensus 241 f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~ 312 (464)
..+||.+.+.... .|.|- .++|++|.+++.+.|.|-+=|++-+.....|..++
T Consensus 28 ~~~G~~c~a~~~~----------d~~wy---------RA~I~~~~~~~~~~V~fvDyGn~e~v~~~~lr~l~ 80 (94)
T 3fdr_A 28 VHVGDIVAAPLPT----------NGSWY---------RARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALR 80 (94)
T ss_dssp CCTTCEEEEEETT----------TTEEE---------EEEEEEECTTSCEEEEETTTCCEEEECGGGCEECC
T ss_pred CCCCCEEEEEECC----------CCeEE---------EEEEEEECCCCeEEEEEEcCCCeEEEEHHHhhhcC
Confidence 5789999886432 25674 68899998888999999988888888777777654
No 59
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=25.22 E-value=58 Score=27.08 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=28.0
Q ss_pred ccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEEecCCCeEEEEeCcee
Q psy16233 314 FVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTW 371 (464)
Q Consensus 314 ~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v~~dgd~rV~~~g~~w 371 (464)
+..||.|.|..= +.-|+.|+|++|+.. -+|-+.|-+.
T Consensus 4 IkkGD~V~Vi~G-------------------kdKGk~GkV~~V~~~--~~ViVeGvN~ 40 (102)
T 3r8s_U 4 IRRDDEVIVLTG-------------------KDKGKRGKVKNVLSS--GKVIVEGINL 40 (102)
T ss_dssp SCSSCEEEECSS-------------------SSTTCEEEEEEEETT--TEEEETTCSE
T ss_pred ccCCCEEEEeEc-------------------CCCCeeeEEEEEEeC--CEEEEeCeEE
Confidence 678999999753 234899999999987 4777765544
No 60
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=24.64 E-value=2.3e+02 Score=21.61 Aligned_cols=38 Identities=32% Similarity=0.461 Sum_probs=28.2
Q ss_pred hccCceeEEEEEecCcceEEEEecCC--eeEEEccCcceec
Q psy16233 273 NFLGHTGIVHRVTEQTLVRVRFENCD--NKWTFDPRALTKV 311 (464)
Q Consensus 273 ~~lGk~G~V~~I~~~gD~rV~~~~~~--~~wtfnP~~L~kv 311 (464)
-+.|-.|.|.+|++ |..-|-|++.. .--||.+.-|..+
T Consensus 16 ~Yy~y~G~VQRvsd-gkaaVLFEGGnWDKLVTf~L~eLe~~ 55 (66)
T 2jz2_A 16 TYYRFEGLVQRVSD-GKAAVLFENGNWDKLVTFRLSELEAV 55 (66)
T ss_dssp TTBTCEEEEEEEET-TEEEEEEESSSCEEEEEEESTTEEEC
T ss_pred cccceeEEEEEecC-CcEEEEecCCCceeEEEEEhhHceec
Confidence 46788999999996 88899998621 4557777666654
No 61
>2k14_A YUAF protein; NFED-like protein, cellular stress, unknown function; NMR {Bacillus subtilis}
Probab=24.10 E-value=1.3e+02 Score=23.42 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=34.8
Q ss_pred chhhhhccCceeEEEEEe-cCcceEEEEec-CCe-eEEEccCcceecccccCCCEEEEec
Q psy16233 268 TPQLLNFLGHTGIVHRVT-EQTLVRVRFEN-CDN-KWTFDPRALTKVDPFVAGDFVYFIP 324 (464)
Q Consensus 268 ~~~M~~~lGk~G~V~~I~-~~gD~rV~~~~-~~~-~wtfnP~~L~kv~~~~~GD~V~I~~ 324 (464)
...+...+|+.|+|+.-. .++-=+|+|.+ .+. .|+--.. . -.+|.+|+.|+|..
T Consensus 14 ~~~~~~liG~~g~V~~~i~~~~~G~V~i~g~gg~~~W~A~s~--~-~~~i~~G~~V~Vv~ 70 (84)
T 2k14_A 14 AYREDDLRGRLGKVITAVPVDGFGEVVIEGIGGTISKSAVSF--D-NQQISYGTTVLVVD 70 (84)
T ss_dssp HHHHHHGGGSEEEEEECBCTTCEEEEEESCTTSCCCEEEEET--T-SCCBCSSCEEEEEE
T ss_pred CCChhhcCCCEEEEEEEeCCCCcEEEEEeeECccEEEEEEeC--C-CCccCCCCEEEEEE
Confidence 445667999999998855 34555677742 115 7985421 0 12478899999853
No 62
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=23.84 E-value=27 Score=32.86 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=26.1
Q ss_pred CcccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEE-EEEec
Q psy16233 238 GYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIV-HRVTE 286 (464)
Q Consensus 238 ~~~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V-~~I~~ 286 (464)
.+.|.+||+|+|..... .+|-. --.-..||+|+| +.+.+
T Consensus 120 ~~~F~vGd~Vrv~~~~~-------~gHtR---~P~YvRGk~G~I~~~~~g 159 (212)
T 3a8g_B 120 TTTFEVGQRVRVRDEYV-------PGHIR---MPAYCRGRVGTISHRTTE 159 (212)
T ss_dssp CCCCCTTCEEEECCCCC-------SSCCS---CCGGGTTCEEEEEEECSS
T ss_pred CcccCCCCeEEEecCCC-------CCccc---ccHHHCCCeEEEEEEecc
Confidence 45699999999984432 22332 123478999999 67764
No 63
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=22.88 E-value=1.1e+02 Score=26.05 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=26.9
Q ss_pred CceeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEecC
Q psy16233 276 GHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPD 325 (464)
Q Consensus 276 Gk~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~d 325 (464)
-++|+|-+|.+ +-..-.++-.|..=.+-.+|.+||.+.|..+
T Consensus 63 ~~IGKVdEIFG--------Pin~~YfsVK~~~gv~a~Sfk~gdk~YId~~ 104 (114)
T 3u28_C 63 TQVGKVDEILG--------PLNEVFFTIKCGDGVQATSFKEGDKFYIAAD 104 (114)
T ss_dssp CEEEEEEEEES--------BTTSCEEEEEECTTCCGGGCCTTCEEEEEGG
T ss_pred ccceeEeEEeC--------CCCccEEEEEecCCCcccccccCCEEEECcc
Confidence 37999999996 1112333333333334457999999999765
No 64
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=22.74 E-value=66 Score=28.93 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=0.0
Q ss_pred ccCCCEEEEecChHHHHhhhcc--CchhHHHHhhhcCCccEEEEEecCC
Q psy16233 314 FVAGDFVYFIPDELSAKEHLKG--HGEWIAAMAGDLGDIGIVIKVYEDK 360 (464)
Q Consensus 314 ~~~GD~V~I~~d~~~vk~lQ~g--hGgW~~~M~~~lG~~G~V~~v~~dg 360 (464)
|.+||.|-|..|. ..|.| |--+- |++|+|.+|....
T Consensus 34 yk~GD~VdIk~~g----sVqKGmPHk~YH-------GkTGrV~nvtq~A 71 (160)
T 3izc_U 34 YKVGDIVDIKANG----SIQKGMPHKFYQ-------GKTGVVYNVTKSS 71 (160)
T ss_dssp CCTTCEEEECCCT----TCCSSCCCGGGT-------TCEEEEEEECSSS
T ss_pred hcCCCEEEEeccC----ccCCCCCCcccC-------CCCeEEEeeCCcE
No 65
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=22.68 E-value=1.9e+02 Score=21.99 Aligned_cols=43 Identities=16% Similarity=0.393 Sum_probs=24.5
Q ss_pred eeEEEEEecCcceEEEEecCCeeEEEccCccee--cccccCCCEEEE
Q psy16233 278 TGIVHRVTEQTLVRVRFENCDNKWTFDPRALTK--VDPFVAGDFVYF 322 (464)
Q Consensus 278 ~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~k--v~~~~~GD~V~I 322 (464)
.|+|.+|++.|-+ |..+. +..=..+...+.. +..|.+||.|++
T Consensus 10 ~G~V~~v~~~G~f-V~l~~-~~~Gllh~sel~~~~~~~~~~Gd~V~v 54 (80)
T 2k52_A 10 KGVVTRIEKYGAF-INLNE-QVRGLLRPRDMISLRLENLNVGDEIIV 54 (80)
T ss_dssp EEEEEEEETTEEE-EEEET-TEEEEECGGGCSSCCGGGCCTTCEEEE
T ss_pred EEEEEEEeCCEEE-EEECC-CCEEEEEHHHCCcccceeeCCCCEEEE
Confidence 5889999887755 66653 3222222222221 125888888775
No 66
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=22.61 E-value=1.1e+02 Score=27.24 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=28.2
Q ss_pred cccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEEecCCCeEEEEeCcee
Q psy16233 313 PFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTW 371 (464)
Q Consensus 313 ~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v~~dgd~rV~~~g~~w 371 (464)
.+..||.|+|..= +.-|+.|+|++|+...+ +|-+.|-+.
T Consensus 48 ~IkKGD~V~Vi~G-------------------kdKGk~GkVl~V~~kk~-~V~VEGVN~ 86 (150)
T 3iz5_Y 48 PIRKDDEVQVVRG-------------------SYKGREGKVVQVYRRRW-VIHVERITR 86 (150)
T ss_dssp ECCSSSEEEECSS-------------------TTTTCEEEEEEEETTTT-EEEETTCEE
T ss_pred ccCCCCEEEEeec-------------------CCCCccceEEEEEcCCC-EEEEeCcEE
Confidence 4789999999753 23389999999997543 566655443
No 67
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=22.50 E-value=1.2e+02 Score=25.71 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=26.0
Q ss_pred ccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEecCcceEEEEec
Q psy16233 240 IFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFEN 296 (464)
Q Consensus 240 ~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~~gD~rV~~~~ 296 (464)
.+..||.|.|. .|. .-|+.|+|++|+.+. -+|-+++
T Consensus 15 ~IkkGD~V~Vi-------------~Gk-------dKGk~GkV~~V~~~~-~~V~VEG 50 (115)
T 2zjr_R 15 HFKKGDTVIVL-------------SGK-------HKGQTGKVLLALPRD-QKVVVEG 50 (115)
T ss_dssp SSCTTSEEECC-------------SSS-------STTCEEEEEEEETTT-TEEEESS
T ss_pred cccCCCEEEEe-------------EcC-------CCCcEEEEEEEECCC-CEEEEeC
Confidence 47899999996 232 458999999999643 2555555
No 68
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=22.14 E-value=1.8e+02 Score=24.31 Aligned_cols=44 Identities=25% Similarity=0.223 Sum_probs=31.9
Q ss_pred ceeEEEEEecCcceEEEEecCCeeEEEccCcceec------------ccccCCCEEEEec
Q psy16233 277 HTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKV------------DPFVAGDFVYFIP 324 (464)
Q Consensus 277 k~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv------------~~~~~GD~V~I~~ 324 (464)
.+|+|+.-.-+.-+.|.. .+..+||---.-+ ....+||.|+|..
T Consensus 6 l~G~VvS~Km~KTivV~v----er~~~hpkY~K~~kr~kk~~aHDe~n~~k~GD~V~I~E 61 (105)
T 2vqe_Q 6 LTGVVVSDKMQKTVTVLV----ERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIE 61 (105)
T ss_dssp EEEEEEEEEETTEEEEEE----EEEEECTTTCCEEEEEEEEEEECTTCCCCTTCEEEEEE
T ss_pred EEEEEEecCCCcEEEEEE----EEEEEcCccceEEecceEEEEECCCCCCCCCCEEEEEE
Confidence 379999988888888886 4577887643321 1388999999964
No 69
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=22.05 E-value=67 Score=26.50 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=31.0
Q ss_pred cccCCCEEEEecChHHHHhhhccCchhHHHH--hhhcCCccEEEEEecCCCeEEEE
Q psy16233 313 PFVAGDFVYFIPDELSAKEHLKGHGEWIAAM--AGDLGDIGIVIKVYEDKDVRVAF 366 (464)
Q Consensus 313 ~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M--~~~lG~~G~V~~v~~dgd~rV~~ 366 (464)
.|.+||.|-|..|...-| | | .-.=|++|+|.++.. .-+-|.+
T Consensus 33 ~yk~Gd~VdIk~~~svqK----G-------mPhk~yHGkTG~V~~v~~-~AvgV~V 76 (96)
T 1vq8_Q 33 EFDDGEKVHLKIDPSVPN----G-------RFHPRFDGQTGTVEGKQG-DAYKVDI 76 (96)
T ss_dssp CCCTTCEEEECCCTTCCS----S-------CCCGGGTTCEEEEEEEET-TEEEEEE
T ss_pred HcCCCCEEEEEecCCccC----C-------CCcccCCCCCeEEEeECC-CEEEEEE
Confidence 499999999999976543 3 3 245689999999997 3455555
No 70
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=21.92 E-value=1.2e+02 Score=27.04 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=56.6
Q ss_pred ceeEEEEEecCcceEEEEecCCeeEEEccCcceecccccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEE
Q psy16233 277 HTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKV 356 (464)
Q Consensus 277 k~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v 356 (464)
.-|+..++..++.+-|-. .+......-........|.+|+.|++..-+..|..+- .+..|++-+|.++
T Consensus 9 tygt~l~~~~d~tadV~t--~GRkMrv~vsP~vd~~~L~~Gq~V~LNEal~VVea~~----------~~~~Gev~tv~Ev 76 (153)
T 2wfw_A 9 GYGVLLSVHEDKTVDVFT--SGRKMRLTCSPNIDTDTLALGQTVRLNEALTIVEAGT----------YEQVGEISTLREV 76 (153)
T ss_dssp EEEEEEEECTTSCEEEEE--TTEEEEECBCTTCCGGGCCTTCEEEECTTCCEEEECC----------CCCSEEEEEEEEE
T ss_pred ceEEEEEEcCCCeEEEEE--CCcEEEEEeCCCCCHHHCCCCCEEEECCceEEEEccC----------CCCccCEEEEEEE
Confidence 468888888888888877 3666666555555667899999999988877776431 3567788888888
Q ss_pred ecC-CCeEEEE
Q psy16233 357 YED-KDVRVAF 366 (464)
Q Consensus 357 ~~d-gd~rV~~ 366 (464)
..| +.+.|.-
T Consensus 77 L~d~~RalV~~ 87 (153)
T 2wfw_A 77 LDDGLRALVVG 87 (153)
T ss_dssp CTTSSEEEEEC
T ss_pred eCCCCeEEEEc
Confidence 887 4555543
No 71
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=21.86 E-value=1e+02 Score=26.62 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=28.8
Q ss_pred cccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEEecCCCeEEEEeCceee
Q psy16233 313 PFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTWT 372 (464)
Q Consensus 313 ~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v~~dgd~rV~~~g~~w~ 372 (464)
++..||.|+|..= +.-|+.|+|++|+...+ +|-+.|-+..
T Consensus 49 ~IkkgD~V~Vi~G-------------------kdKGk~GkV~~V~~kk~-~V~VEgVn~~ 88 (127)
T 3u5e_Y 49 PIRRDDEVLVVRG-------------------SKKGQEGKISSVYRLKF-AVQVDKVTKE 88 (127)
T ss_dssp ECCTTCEEEECSS-------------------TTTTCEEEEEEEEGGGT-EEEEETCEEE
T ss_pred cccCCCEEEEeec-------------------CCCCccceEEEEECCCC-EEEEeCeEEE
Confidence 3789999999753 23389999999997433 5666665543
No 72
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=21.47 E-value=1.7e+02 Score=22.88 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=29.4
Q ss_pred ceeEEEEEec-CcceEEEEecC------CeeEEEc--cCcceecccccCCCEEEEec
Q psy16233 277 HTGIVHRVTE-QTLVRVRFENC------DNKWTFD--PRALTKVDPFVAGDFVYFIP 324 (464)
Q Consensus 277 k~G~V~~I~~-~gD~rV~~~~~------~~~wtfn--P~~L~kv~~~~~GD~V~I~~ 324 (464)
-.|+|.+|+. .+-+.++.+.- .-+-+|. +.++ +..|++||.|++..
T Consensus 10 ~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~--l~~lk~Gd~V~F~~ 64 (80)
T 2qcp_X 10 ATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTK--MSEIKTGDKVAFNF 64 (80)
T ss_dssp EEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCE--ECCCCTTCEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhh--hhcCCCCCEEEEEE
Confidence 5799999985 45677775330 1333343 2332 45699999999865
No 73
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=21.41 E-value=94 Score=26.16 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=29.0
Q ss_pred cccCCCEEEEecChHHHHhhhccCchhHHHHhhhcCCccEEEEEecCCCeEEEEeCceee
Q psy16233 313 PFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKNTWT 372 (464)
Q Consensus 313 ~~~~GD~V~I~~d~~~vk~lQ~ghGgW~~~M~~~lG~~G~V~~v~~dgd~rV~~~g~~w~ 372 (464)
.+..||.|.|..= +.-|+.|+|++|+...+ +|-+.|-+..
T Consensus 6 ~IkkGD~V~Vi~G-------------------kdKGk~GkV~~V~~~~~-~ViVEGvN~~ 45 (110)
T 3v2d_Y 6 HVKKGDTVLVASG-------------------KYKGRVGKVKEVLPKKY-AVIVEGVNIV 45 (110)
T ss_dssp SCCTTSEEEECSS-------------------TTTTCEEEEEEEEGGGT-EEEETTSSEE
T ss_pred ccCCCCEEEEeEc-------------------CCCCeEeEEEEEECCCC-EEEEeCEEEE
Confidence 4778999999763 23489999999997533 5666665553
No 74
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=20.98 E-value=1.7e+02 Score=23.66 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=31.0
Q ss_pred eeEEEEEecCcceEEEEecCCeeEEEccCcceec------------ccccCCCEEEEecC
Q psy16233 278 TGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKV------------DPFVAGDFVYFIPD 325 (464)
Q Consensus 278 ~G~V~~I~~~gD~rV~~~~~~~~wtfnP~~L~kv------------~~~~~GD~V~I~~d 325 (464)
+|+|+.-.-+.-+.|.. .+..+||---.-+ ....+||.|+|..-
T Consensus 6 ~G~VvS~Km~KTivV~v----e~~~~hp~Y~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~ 61 (89)
T 1qd7_I 6 VGRVVSDKMDKTITVLV----ETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMET 61 (89)
T ss_pred EEEEEecCCCceEEEEE----EEEEEcCccceEEeccEEEEEeCCccCCCCCCEEEEEEc
Confidence 68898877777788875 4577888543221 13889999999653
No 75
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=20.97 E-value=1.3e+02 Score=28.27 Aligned_cols=100 Identities=9% Similarity=0.102 Sum_probs=58.8
Q ss_pred ccCCEEEEecCHHHHHHhhhcCCCCcch-hh--hhccCceeEEEEEe--cCcceEEEEecCCeeEEEccCcceecccccC
Q psy16233 242 RRGDRVKVITDAKTLQHVQESSKGGWTP-QL--LNFLGHTGIVHRVT--EQTLVRVRFENCDNKWTFDPRALTKVDPFVA 316 (464)
Q Consensus 242 ~vGD~V~V~~d~~~lk~lQ~g~hGgW~~-~M--~~~lGk~G~V~~I~--~~gD~rV~~~~~~~~wtfnP~~L~kv~~~~~ 316 (464)
..+|.+.| .-+.++.+-.- .|-..+ .. .+.--|..+|.+++ ..|...+...+ +.+..| |. +.+.+
T Consensus 51 G~mDVIsI--t~e~fRli~d~-kGrf~~~~I~~eea~~KLcKV~~k~~~~~G~~~l~~HD-Grti~~-pd-----~~ik~ 120 (213)
T 3kbg_A 51 GFMDVIEI--NGESYRVVYND-QGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHD-GRTFIT-DD-----KSIKV 120 (213)
T ss_dssp CTTCEEEE--TTEEEEEEECT-TSCEEEEECCTTGGGEEEEEEEEEEEEGGGEEEEEETT-SCEEEE-CC-----TTCCT
T ss_pred cceeEEEe--cCceeEEEecC-CCcEEEEEeChhHccceEEEEEEEEEecCCeeEEEecC-ccEEEc-CC-----CCccc
Confidence 44566665 44444444432 333222 11 12333667777665 35788888766 888888 43 34778
Q ss_pred CCEEEEecChHHH---Hhhhcc-----CchhHHHHhhhcCCccEEEEEe
Q psy16233 317 GDFVYFIPDELSA---KEHLKG-----HGEWIAAMAGDLGDIGIVIKVY 357 (464)
Q Consensus 317 GD~V~I~~d~~~v---k~lQ~g-----hGgW~~~M~~~lG~~G~V~~v~ 357 (464)
+|.|+|+..-..+ -.+..| -|| .-+|.+|+|.++.
T Consensus 121 ~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG------~n~GriG~I~~ie 163 (213)
T 3kbg_A 121 GDVLAVSVPDMKISEIIKMQPGNKAYITAG------SHVNQTGTISKIE 163 (213)
T ss_dssp TCEEEEETTTCCEEEEECCSTTCEEEECSS------TTTTCEEEEEEEC
T ss_pred CCEEEEECCCCceeeEEEcCCCCEEEEECC------CcceEEEEEEEEE
Confidence 9999998754332 123333 133 4689999999997
No 76
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=20.61 E-value=2.4e+02 Score=20.27 Aligned_cols=53 Identities=13% Similarity=0.158 Sum_probs=37.5
Q ss_pred ccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEec-CcceEEEEecCCeeEEEccCcceec
Q psy16233 240 IFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTE-QTLVRVRFENCDNKWTFDPRALTKV 311 (464)
Q Consensus 240 ~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~-~gD~rV~~~~~~~~wtfnP~~L~kv 311 (464)
.+++||.+...-..+ |.|- .++|.+|.. ++.+.|.|.+=|++=+.....|..+
T Consensus 3 ~~~~G~~c~A~~s~D----------g~wY---------rA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~ 56 (59)
T 1mhn_A 3 QWKVGDKCSAIWSED----------GCIY---------PATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 56 (59)
T ss_dssp CCCTTCEEEEECTTT----------SCEE---------EEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCT
T ss_pred cCCcCCEEEEEECCC----------CCEE---------EEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCC
Confidence 378899888864332 4563 578899986 5889999988677766665555543
No 77
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=20.38 E-value=1.2e+02 Score=27.29 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=0.0
Q ss_pred ccCCCEEEEecChHHHHhhhcc--CchhHHHHhhhcCCccEEEEEecCCCeEEEEeCc
Q psy16233 314 FVAGDFVYFIPDELSAKEHLKG--HGEWIAAMAGDLGDIGIVIKVYEDKDVRVAFRKN 369 (464)
Q Consensus 314 ~~~GD~V~I~~d~~~vk~lQ~g--hGgW~~~M~~~lG~~G~V~~v~~dgd~rV~~~g~ 369 (464)
|.+||.|-|.-|. ..|.| |=-+- |++|+|.+|.. .-+-|.++.+
T Consensus 34 yk~GD~VdIk~~g----sVqKGmPHk~YH-------GkTGrV~nvt~-~AvgV~Vnk~ 79 (164)
T 3iz5_U 34 YKVGEHVDVKVNG----AVHKGMPHKFYH-------GRTGRVWNVTK-RAIGVEINKQ 79 (164)
T ss_dssp CCTTCEEEECCCT----TCCSSCCCGGGT-------TEEEEEEEECS-SSEEEEEECC
T ss_pred hCCCCEEEEEccC----cccCCCCCcccC-------CCCeeEEeecC-CEEEEEEEee
No 78
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=20.26 E-value=1.1e+02 Score=24.23 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=34.5
Q ss_pred cccccCCEEEEecCHHHHHHhhhcCCCCcchhhhhccCceeEEEEEecCc-ceEEEEecCCeeEEE
Q psy16233 239 YIFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQT-LVRVRFENCDNKWTF 303 (464)
Q Consensus 239 ~~f~vGD~V~V~~d~~~lk~lQ~g~hGgW~~~M~~~lGk~G~V~~I~~~g-D~rV~~~~~~~~wtf 303 (464)
..|..|+-|.+. |.|++.- .|+|++|.... -.-|+|++....|..
T Consensus 25 ~~f~eGeDVLar----------------wsDGlfY----LGTI~kV~~~~e~ClV~F~D~S~~W~~ 70 (79)
T 2m0o_A 25 PRLWEGQDVLAR----------------WTDGLLY----LGTIKKVDSAREVCLVQFEDDSQFLVL 70 (79)
T ss_dssp CCCCTTCEEEBC----------------CTTSCCC----EEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ceeccCCEEEEE----------------ecCCCEE----eEEEEEeccCCCEEEEEEcCCCeEEEE
Confidence 348899988872 6665554 68999999854 489999997888865
Done!