RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16233
(464 letters)
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 98
Score = 93.6 bits (232), Expect = 2e-23
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 55 GSENAYDLQVYDSGPVGI---------KHETISCDACQDERSCIVGTRYSCIECSNYDLC 105
GS + L+ + + + KH I C+ C+ + I G Y C EC Y LC
Sbjct: 1 GSSGSSGLEEFKNSSKLVAAAEKERLDKHLGIPCNNCK--QFPIEGKCYKCTECIEYHLC 58
Query: 106 ASCYHGDEHDITHAFYRVDTPTSSTASLPPRRLSKKIYVRG 146
C+ H ++H F + SL R G
Sbjct: 59 QECFDSYCH-LSHTFTFREKRNQKWRSLEKRADEVSGPSSG 98
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL
conjugation pathway, structural genomics consortium,
SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens}
Length = 89
Score = 90.7 bits (225), Expect = 1e-22
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 135 PRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLW 194
R ++ GA+V+RGL+W+W +QDG P G + + V W
Sbjct: 10 GRENLYFQGLKYMVPGARVTRGLDWKWRDQDGSPQGEGTVTGE-------LHNGWIDVTW 62
Query: 195 SIGKENIYRIGSYGKVDLKCV 215
G N YR+G+ GK DLK
Sbjct: 63 DAGGSNSYRMGAEGKFDLKLA 83
Score = 83.4 bits (206), Expect = 6e-20
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 4 IEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVKSN-VVSVIWDLGNKSSCYRVGSENAYDL 62
+ G RV RG DWKW D+DG G GTV N + V WD G +S YR+G+E +DL
Sbjct: 22 MVPGARVTRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNS-YRMGAEGKFDL 80
Query: 63 QVYDSGP 69
++
Sbjct: 81 KLAPGYD 87
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain
containing protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.19.1
Length = 86
Score = 89.6 bits (222), Expect = 3e-22
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 135 PRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLW 194
+ ++ GA+V RGL+W+W +QDG P G + + V W
Sbjct: 4 GSSGVRSQVLKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGE-------LHNGWIDVTW 56
Query: 195 SIGKENIYRIGSYGKVDLKCVGSGAS 220
G N YR+G+ GK DLK +
Sbjct: 57 DAGGSNSYRMGAEGKFDLKLAPGYSG 82
Score = 84.6 bits (209), Expect = 2e-20
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 4 IEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVKSN-VVSVIWDLGNKSSCYRVGSENAYDL 62
+ G RVIRG DWKW D+DG G GTV N + V WD G +S YR+G+E +DL
Sbjct: 16 MVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNS-YRMGAEGKFDL 74
Query: 63 QVYDSGP 69
++
Sbjct: 75 KLAPGYS 81
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 82
Score = 72.0 bits (176), Expect = 5e-16
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 55 GSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIEC---SNYDLCASCY-- 109
GS + Q+ ++H CD C I G R+ C +C + D C SC
Sbjct: 1 GSSGSSGQQMQAESG-FVQHVGFKCDNCG--IEPIQGVRWHCQDCPPEMSLDFCDSCSDC 57
Query: 110 --HGDEHDITHAFYRVDTPT 127
D H H + +
Sbjct: 58 LHETDIHKEDHQLEPIYRSS 77
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 63
Score = 68.0 bits (166), Expect = 7e-15
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 67 SGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCY----HGDEHDITHAFYR 122
SG G+ H + C C ++G RY C +C NY LC C+ G H H
Sbjct: 3 SGSSGVFHP-VECSYCH--SESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKE 59
Query: 123 VDT 125
+
Sbjct: 60 YTS 62
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR
{Mus musculus} SCOP: g.44.1.6
Length = 52
Score = 60.5 bits (147), Expect = 3e-12
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 78 SCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDTP 126
+C+ C V TR+ C C +YDLC +CY+ H H +
Sbjct: 8 TCNEC----KHHVETRWHCTVCEDYDLCINCYNTKSHT--HKMVKWGLG 50
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 1e-05
Identities = 59/314 (18%), Positives = 98/314 (31%), Gaps = 119/314 (37%)
Query: 183 GKS-YRS--VAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHL-PVLGQTISTG 238
G Y++ A+ +W+ + +YG L V + ++ H G+ I
Sbjct: 1632 GMDLYKTSKAAQDVWNRADN--HFKDTYGFSILDIVINNPVNLTI--HFGGEKGKRIREN 1687
Query: 239 Y---IFRRGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTE--QTLVRVR 293
Y IF K+ T+ K + + E S F G++ T+ Q
Sbjct: 1688 YSAMIFETIVDGKLKTE-KIFKEINEHSTS------YTFRSEKGLLSA-TQFTQ------ 1733
Query: 294 FENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLK------------GH--GEW 339
P ALT + E +A E LK GH GE+
Sbjct: 1734 -----------P-ALTLM--------------EKAAFEDLKSKGLIPADATFAGHSLGEY 1767
Query: 340 --IAAMAG--DLGDIGIVIKVYEDKDVRVAFRKNTWTLSSKCLKLIKSNSLSDSTSLEIT 395
+A++A + +++V V +R ++ D E+
Sbjct: 1768 AALASLADVMSIES---LVEV-------VFYRG----------MTMQVAVPRD----ELG 1803
Query: 396 YRDYLLPFLN-SQVNASTQSAPLLNSESPPDVVEEVEAVMREVVRGNPSAVKAFLENNAN 454
+Y + +N +V AS + E+ VVE V +V V N N
Sbjct: 1804 RSNYGMIAINPGRVAAS------FSQEALQYVVERVGKRTGWLV----EIV------NYN 1847
Query: 455 LIDCP----VLGGK 464
V G
Sbjct: 1848 ---VENQQYVAAGD 1858
Score = 33.9 bits (77), Expect = 0.14
Identities = 60/391 (15%), Positives = 106/391 (27%), Gaps = 158/391 (40%)
Query: 115 DITHAFYRVDTPTSSTASLPPRRLSKKIYVRGFSIGAKVSRGLNWEWENQDGGPGKTGRI 174
DI HA + +L + K Y+ + R
Sbjct: 100 DI-HALA-AKLLQENDTTLVKTKELIKNYITARIM---------------------AKRP 136
Query: 175 ISIEDGKVGKS--YRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASS-------MVYK 225
K S +R+V + G + I +G G G + +Y+
Sbjct: 137 FD----KKSNSALFRAVGE-----GNAQLVAI--FG-------GQGNTDDYFEELRDLYQ 178
Query: 226 SHLPVLGQTISTGYIFRRGDRVKVITDAKTLQ----HVQESSKGGWTPQLLNFLGHTGIV 281
++ ++G I A+TL ++ K Q LN L
Sbjct: 179 TYHVLVGDLIKFS--------------AETLSELIRTTLDAEK--VFTQGLNIL------ 216
Query: 282 HRVTEQTLVRVRFENCDNKWTFDPRALTKVD---------PFVA-GDFVYFIPDELSAKE 331
+W +P D P + +++ ++AK
Sbjct: 217 ------------------EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV---VTAKL 255
Query: 332 HLKGHGEWIAAMAGDLGDI-GIVIKV-----------YE--DKDVRVAFRKNTWTLSSKC 377
GE + + G G G+V V + K + V F + + +C
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF----F-IGVRC 310
Query: 378 LKLIKSNSLSDST---SLEI-----TY----RDYLLPFLNSQVNASTQSAP--------L 417
+ + SL S SLE + + + VN + P L
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 418 LNSESPPDVVEEVEAVMREVVRGNPSAVKAF 448
+N + VV G P ++
Sbjct: 371 VNG---AKNL---------VVSGPPQSLYGL 389
Score = 29.2 bits (65), Expect = 4.2
Identities = 36/199 (18%), Positives = 57/199 (28%), Gaps = 66/199 (33%)
Query: 131 ASLPPRRLSKKIYV------RGFSI-GAKVS-RGLNWEWENQDGGPGKTGRIISIEDGKV 182
+ LP K++ + + + G S GLN G I + K+
Sbjct: 358 SHLPA---GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 183 GKSYR---------------SVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSH 227
S R + + + K N+ S+ D++
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV----SFNAKDIQI------------- 457
Query: 228 LPVLGQTISTGYIFR--RGDRVKVITDAKTLQHVQESSKGGWTPQ-------LLNF---- 274
PV T G R G + I D V+ W +L+F
Sbjct: 458 -PVY-DT-FDGSDLRVLSGSISERIVDCIIRLPVK------WETTTQFKATHILDFGPGG 508
Query: 275 -LGHTGIVHRVTEQTLVRV 292
G + HR + T VRV
Sbjct: 509 ASGLGVLTHRNKDGTGVRV 527
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-04
Identities = 36/266 (13%), Positives = 72/266 (27%), Gaps = 93/266 (34%)
Query: 273 NFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEH 332
FL + I + +++ + ++ D + K V + L ++
Sbjct: 92 KFL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-------YNVSRLQPYLKLRQA 143
Query: 333 LKG--HGEWIA--AMAGDLGDIG---IVIKVYEDKDVRVAFRKNT-WTLSSKCLK----L 380
L + + + G G + + V V+ W C L
Sbjct: 144 LLELRPAKNVLIDGVLG----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 381 IKSNSL--------------SDSTSLEI--------------TYRDYLL----------- 401
L S + L I Y + LL
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 402 -PF-LNSQV-------------NASTQSAPLLNSESPPDVVEEVEAVM------------ 434
F L+ ++ +A+T + L+ S +EV++++
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 435 REVVRGNPSAVK---AFLENNANLID 457
REV+ NP + + + D
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWD 345
Score = 38.7 bits (89), Expect = 0.004
Identities = 46/383 (12%), Positives = 101/383 (26%), Gaps = 105/383 (27%)
Query: 101 NYDLCASCYHGDEHD---ITHAF-YRVDTPTSSTASLPPR---RLSKKIYVRGFSIGAKV 153
NY S ++ +T + + D + RL + +R + +
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 154 SRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAK----VLW-SIGKENIYRIGS-- 206
++ + + G GKT ++++ V SY+ K + W ++ N +
Sbjct: 150 AKNVLID---GVLGSGKT--WVALD---VCLSYKVQCKMDFKIFWLNLKNCN--SPETVL 199
Query: 207 ------YGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYIFRRGDRVKVITDAKTLQHVQ 260
++D S K + + + + + ++ +V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-----NV- 253
Query: 261 ESSKGGWTPQLLN-FLGH---------TGIVHRVTEQTLVRVRFENCDNKWTFD------ 304
+ N F + ++ T + + + T
Sbjct: 254 ------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD--HHSMTLTPDEVKS 305
Query: 305 -------------PRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEWIAAMAGDLGDIG 351
PR + +P I D L+ ++ K I
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-----IE 360
Query: 352 IVIKVYEDKDVR------VAFRKNTW----TLS---------------SKCLK--LIKSN 384
+ V E + R F + LS +K K L++
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 385 SLSDSTSLEITYRDYLLPFLNSQ 407
+ S+ Y + + N
Sbjct: 421 PKESTISIPSIYLELKVKLENEY 443
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding
domain, PDI-like protein, structural genomics; NMR
{Arabidopsis thaliana} SCOP: g.49.1.3
Length = 89
Score = 35.3 bits (81), Expect = 0.004
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 73 KHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITH 118
+ + +CD C Y C EC ++DL A C ++ +
Sbjct: 44 RVQVYTCDKC---EEEGTIWSYHCDEC-DFDLHAKCALNEDTKESG 85
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 30.2 bits (68), Expect = 1.4
Identities = 11/34 (32%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 75 ETISCDACQDERSCIVGTRYSCIECSNYDLCASC 108
ET SC ACQ Y C C C
Sbjct: 356 ETTSCKACQMLLRGTFYQGYRCYRC-RAPAHKEC 388
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 30.0 bits (67), Expect = 1.7
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 417 LLNSESPPDVVEEVEAVMREVVRGNPSAVKAFLENNA 453
LL+ ++ V + + +VR + + FL +
Sbjct: 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDG 168
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 29.9 bits (67), Expect = 1.7
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 59 AYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEH--DI 116
+ Y K + ++ C G + C++C C + H H I
Sbjct: 28 TCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMCLQCGFCG-CWNHSHFLSHSKQI 86
Query: 117 THAFY 121
H F
Sbjct: 87 GHIFG 91
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 29.1 bits (64), Expect = 1.9
Identities = 10/87 (11%), Positives = 22/87 (25%), Gaps = 4/87 (4%)
Query: 30 TVVAVKSNV--VSVIW-DLGNKSSCYRVGSENAYDLQVYDSGPVGIKHETISCDACQDER 86
+ A+ N+ ++ W G Y S + D + V + +
Sbjct: 45 RMPAIPVNIHSMNFTWQAAGQAEYFYEFLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQ 104
Query: 87 SCIVGTR-YSCIECSNYDLCASCYHGD 112
+ D+ G+
Sbjct: 105 VGFPCLGXQDGVAAFEVDVIVMNSEGN 131
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin
ligase, protein binding, lygase,; 1.60A {Homo sapiens}
PDB: 3ny2_A 3ny1_A
Length = 75
Score = 27.2 bits (60), Expect = 2.5
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 94 YSCIECS---NYDLCASCYHGDEHDITHAFYRVDTPTS 128
YSC +C+ LC C+ G H H + +
Sbjct: 18 YSCRDCAVDPTCVLCMECFLGSIHR-DHRYRMTTSGGG 54
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport,
[4Fe-4S] clusters, iron-SULF clusters, reduction
potential; 1.65A {Escherichia coli}
Length = 85
Score = 27.4 bits (61), Expect = 2.8
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 13/48 (27%)
Query: 72 IKHETISCDACQDERSCIVG------TRYS-----CIECSNYDLCASC 108
I + I+CD C+ E C Y C EC + +C
Sbjct: 4 ITKKCINCDMCEPE--CPNEAISMGDHIYEINSDKCTECVGHYETPTC 49
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX,
zinc-binding protein, N-END RU ligase, metal binding
protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A
3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Length = 82
Score = 27.3 bits (60), Expect = 2.9
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 94 YSCIECS---NYDLCASCYHGDEH 114
Y C EC LC C++ +H
Sbjct: 22 YRCHECGCDDTCVLCIHCFNPKDH 45
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 29.6 bits (67), Expect = 3.2
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 7 GLRVIRGPDWKWLDEDGGEGGL 28
G+R+I GP KW DGGE GL
Sbjct: 701 GVRLI-GPKPKWARSDGGEAGL 721
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron,
iron-sulfur, metal-binding, transport; 1.05A
{Allochromatium vinosum} PDB: 1blu_A 3exy_A
Length = 82
Score = 27.0 bits (60), Expect = 3.7
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 72 IKHETISCDACQDE--RSCIV--GTRYS-----CIECSNYDLCASC 108
I E I+CD C+ E I Y C EC + + C
Sbjct: 4 ITDECINCDVCEPECPNGAISQGDETYVIEPSLCTECVGHYETSQC 49
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase,
structural genomics, protein structure initiative,
nysgrc; 1.80A {Kosmotoga olearia}
Length = 400
Score = 28.9 bits (65), Expect = 4.0
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 415 APLLNSESPPDVVEEVEAVMREVVRGNPSAVKAFLE 450
P++ + P + EE +++ +RGN A + +E
Sbjct: 78 LPMILGKEPLSI-EEFNHLIKNGIRGNHFA-RCGVE 111
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR
family of transcriptional regulator, all-helical; 1.80A
{Mycobacterium tuberculosis}
Length = 203
Score = 28.2 bits (63), Expect = 4.7
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 422 SPPDVVEEVEAVMREVVRGNPSA 444
S DV + ++ +R ++ SA
Sbjct: 181 SATDVSKRLDLAVRLLIGDQDSA 203
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A
{Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Length = 370
Score = 28.4 bits (64), Expect = 5.0
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 415 APLLNSESPPDVVEEVEAVMREVVRGNPSAVKAFLE 450
APLL + ++ + +M V GN SA KA ++
Sbjct: 72 APLLVGKDASNL-SQARVLMDRAVTGNLSA-KAAID 105
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal
transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2
PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A*
1iq7_A*
Length = 686
Score = 28.8 bits (63), Expect = 5.1
Identities = 16/106 (15%), Positives = 26/106 (24%), Gaps = 14/106 (13%)
Query: 21 EDGGEGGLGTVVAVKSNVVSVIWDLGNKSSCYRVGSENAYDLQVYDSGPVGIKHETISCD 80
+G V VK + DL K+SC+ G + + +
Sbjct: 85 TEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCH-TGLGRSAGWNIPIGTLIHRGAIEWEGI 143
Query: 81 ACQDER---------SCIVGTRYS---CIECSNYDLCASCYHGDEH 114
SC+ G C +C C +
Sbjct: 144 ESGSVEQAVAKFFSASCVPGATIEQKLCRQCKGDPKT-KCARNAPY 188
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 28.5 bits (62), Expect = 5.9
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 78 SCDACQDERSCIVGTRYSCIECSNYDLCASC 108
C + +C +C +C+++ C
Sbjct: 536 ECQPMEGTATCNGSGSDTCAQCAHFRDGPHC 566
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target
9450D, isomerase, PSI-2, protein structure initiative;
2.20A {Corynebacterium glutamicum}
Length = 383
Score = 28.4 bits (64), Expect = 6.1
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 415 APLLNSESPPDVVEEVEAVMREVVRGNPSAVKAF 448
AP+L + ++ + A + VV A A
Sbjct: 78 APVLIGRAVSEL-AGIMADLERVVARARYAKAAV 110
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP:
d.58.1.1
Length = 80
Score = 26.3 bits (58), Expect = 6.2
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 9/46 (19%)
Query: 72 IKHETISCDACQDE--RSCIVGTRY-------SCIECSNYDLCASC 108
I + +CDAC +E I C EC C
Sbjct: 4 INDDCTACDACVEECPNEAITPGDPIYVIDPTKCSECVGAFDEPQC 49
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A
{Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A
1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F*
1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F*
1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Length = 101
Score = 26.8 bits (60), Expect = 6.3
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 417 LLNSESPPDVVEEVEAVMR---EVVR 439
E P D V ++ +R V R
Sbjct: 62 WYQVEMPEDRVNDLARELRIRDNVRR 87
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural
genomics, PSI, protein structu initiative, nysgrc; 2.30A
{Roseovarius nubinhibens} PDB: 3fvd_B
Length = 378
Score = 28.0 bits (63), Expect = 6.5
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 415 APLLNSESPPDVVEEVEAVMREVVRGNPSAVKAF 448
AP L P + + V VM + G+
Sbjct: 75 APHLLGLDPRSL-DHVNRVMDLQLPGHSYVKSPI 107
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 28.1 bits (63), Expect = 6.7
Identities = 16/92 (17%), Positives = 25/92 (27%), Gaps = 17/92 (18%)
Query: 240 IFRRGDRVKVITDAKTLQHVQESSK-----GGWTPQLLNFLGHTGIVHRVTEQTLVRVRF 294
I D V + T ++ K G W LL L + +
Sbjct: 175 IRHDDDGVTIETADGEY----QAKKAIVCAGTWVKDLLPELPVQ-----PVRKVFAWYQ- 224
Query: 295 ENCDNKWTFDPRALTKVDPFVAGDFVYFIPDE 326
D +++ + GD Y P E
Sbjct: 225 --ADGRYSVKNKFPAFTGELPNGDQYYGFPAE 254
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural
genomics, mandelate racemase/muconatelactonizing
hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism}
PDB: 2pce_A
Length = 386
Score = 28.0 bits (63), Expect = 6.8
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 415 APLLNSESPPDVVEEVEAVMREVVRGNPSA 444
AP + P + + MR+ ++G+ A
Sbjct: 75 APAILGMDPRQH-DRIWDRMRDTLKGHRDA 103
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein;
enolase superfamily, prediction of function; HET: NSK;
1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Length = 369
Score = 28.0 bits (63), Expect = 6.9
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 415 APLLNSESPPDVVEEVEAVMREVVRGNPSAVKAFLE 450
P L ++P ++ E++ +M + G P+A KA ++
Sbjct: 71 TPALIGQNPMNI-EKIHDMMDNTIYGVPTA-KAAID 104
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter,
transferrin R serum, metal transport; HET: P6G; 2.10A
{Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A*
3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Length = 698
Score = 28.0 bits (61), Expect = 7.4
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 9/97 (9%)
Query: 18 WLDEDGGEGGLGTVVAVKSNVVSVIWDLGNKSSCYRVGSENAYDLQVYDSGPVGIKHETI 77
+ ++ + V VK + + L K SC+ + P+G+ + +
Sbjct: 104 YGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCH-----TGLGRSAGWNIPIGLLYCDL 158
Query: 78 SCDACQDERSCIVGTRYSCIECSNYD----LCASCYH 110
E++ SC C++ LC C
Sbjct: 159 PEPRKPLEKAVANFFSGSCAPCADGTDFPQLCQLCPG 195
>3r3t_A 30S ribosomal protein S6; structural genomics, center for
structural genomics of infec diseases, csgid,
beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Length = 99
Score = 26.4 bits (59), Expect = 7.5
Identities = 4/26 (15%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 417 LLNSESPPDVVEEVEAVMR---EVVR 439
+LN + + + E + + + +++R
Sbjct: 65 ILNVNANAEAINEFDRLAKINEDILR 90
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction
potential, iron binding protein electron transport;
1.32A {Pseudomonas aeruginosa}
Length = 82
Score = 26.2 bits (58), Expect = 7.8
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 13/48 (27%)
Query: 72 IKHETISCDACQDERSCIVG------TRYS-----CIECSNYDLCASC 108
I + I+CD C+ E C G Y C EC + C
Sbjct: 4 ITDDCINCDVCEPE--CPNGAISQGEEIYVIDPNLCTECVGHYDEPQC 49
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 27.2 bits (59), Expect = 7.9
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 79 CDACQDERSCIVGTRYSCIECSNYDLCASC 108
C C ++ +R C+EC + +C SC
Sbjct: 71 CARCLQPYRLLLNSRRQCLEC-SLFVCKSC 99
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP:
c.1.11.2 d.54.1.1 PDB: 2chr_A
Length = 370
Score = 27.6 bits (62), Expect = 8.1
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 415 APLLNSESPPDVVEEVEAVMREVVRGNPSAVKAFLE 450
AP L +V M V GN SA KA +E
Sbjct: 72 APHLLGTDAFNV-SGALQTMARAVTGNASA-KAAVE 105
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding, isomeras structural genomics, PSI-2; HET: MUC;
1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A*
1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
Length = 382
Score = 27.6 bits (62), Expect = 8.2
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 415 APLLNSESPPDVVEEVEAVMREVVRGNPSAVKAF 448
APLL + ++ + + +RGN A
Sbjct: 78 APLLIGQDASNI-NAAMLRLEQSIRGNTFAKSGI 110
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2,
phospholipid biosynthesis structural genomics, protein
structure initiative; 1.40A {Escherichia coli} SCOP:
d.13.1.4
Length = 227
Score = 27.6 bits (61), Expect = 8.3
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 254 KTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRV 292
+ L + + W P GH + RVTE LV+
Sbjct: 128 EQLDNNLANISSRWLPLPGGLRGHEYLARRVTESELVQR 166
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 28.1 bits (61), Expect = 8.9
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 78 SCDACQDERSCIVGTRYSCIECSNYDLCASC 108
C +C +CI+C++Y C
Sbjct: 537 ECLPQAMNITCTGRGPDNCIQCAHYIDGPHC 567
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Length = 543
Score = 27.7 bits (62), Expect = 9.0
Identities = 7/39 (17%), Positives = 11/39 (28%)
Query: 368 KNTWTLSSKCLKLIKSNSLSDSTSLEITYRDYLLPFLNS 406
W S++ L D + L + L L
Sbjct: 319 LTQWQASAQAQAKAAELGLDDVSGLHSWFVGQLALHLKH 357
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor
complex, cytokine, cytokine-cytokine recepto; 3.00A
{Homo sapiens}
Length = 173
Score = 27.1 bits (59), Expect = 9.4
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 78 SCDACQDERSCIVGTRYSCIECSNYD-LCASCYHG 111
C C R C G + D +C C G
Sbjct: 101 GCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPG 135
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible
chloromuconate cycloisomerase...; (beta/alpha)8-barrel;
3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Length = 368
Score = 27.6 bits (62), Expect = 9.5
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 415 APLLNSESPPDVVEEVEAVMREVVRGNPSAVKAFLE 450
A L S D+ +M ++ GN K+
Sbjct: 70 AKGLIGTSCLDI-VSNSLLMDAIIYGNSCI-KSAFN 103
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.80A {Silicibacter pomeroyi}
Length = 378
Score = 27.7 bits (62), Expect = 9.5
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 415 APLLNSESPPDVVEEVEAVMREVVRGNPSAVKAFLE 450
AP + P + +VE M + G+ A K+ ++
Sbjct: 75 APFVLGLDPRRL-LDVERAMDIALPGHLYA-KSPID 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.415
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,271,254
Number of extensions: 438772
Number of successful extensions: 1205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1187
Number of HSP's successfully gapped: 62
Length of query: 464
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 367
Effective length of database: 3,993,456
Effective search space: 1465598352
Effective search space used: 1465598352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)