RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16233
(464 letters)
>d2dk3a1 b.34.19.1 (A:8-80) E3 ubiquitin-protein ligase hectd1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 82.8 bits (205), Expect = 2e-20
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 4 IEIGLRVIRGPDWKWLDEDGGEGGLGTVVAVKSN-VVSVIWDLGNKSSCYRVGSENAYDL 62
+ G RVIRG DWKW D+DG G GTV N + V WD G +S YR+G+E +DL
Sbjct: 9 MVPGARVIRGLDWKWRDQDGSPQGEGTVTGELHNGWIDVTWDAGGSNS-YRMGAEGKFDL 67
Query: 63 QV 64
++
Sbjct: 68 KL 69
Score = 80.9 bits (200), Expect = 8e-20
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 144 VRGFSIGAKVSRGLNWEWENQDGGPGKTGRIISIEDGKVGKSYRSVAKVLWSIGKENIYR 203
++ GA+V RGL+W+W +QDG P G + V W G N YR
Sbjct: 6 LKYMVPGARVIRGLDWKWRDQDGSPQGEGTVTGELH-------NGWIDVTWDAGGSNSYR 58
Query: 204 IGSYGKVDLKCV 215
+G+ GK DLK
Sbjct: 59 MGAEGKFDLKLA 70
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 74.6 bits (183), Expect = 3e-17
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 57 ENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDI 116
+N+ L KH I C+ C+ + I G Y C EC Y LC C+ H
Sbjct: 5 KNSSKLVAAAEKERLDKHLGIPCNNCK--QFPIEGKCYKCTECIEYHLCQECFDSYCHL- 61
Query: 117 THAFYRVDTPTSSTASLPPR 136
+H F + SL R
Sbjct: 62 SHTFTFREKRNQKWRSLEKR 81
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3,
ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 69
Score = 58.9 bits (142), Expect = 4e-12
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Query: 72 IKHETISCDACQDERSCIVGTRYSCIEC---SNYDLCASCY----HGDEHDITHAFYRV 123
++H CD C I G R+ C +C + D C SC D H H +
Sbjct: 10 VQHVGFKCDNCG--IEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPI 66
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 52
Score = 55.2 bits (133), Expect = 7e-11
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 78 SCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDEHDITHAFYRVDTP 126
+C+ C+ V TR+ C C +YDLC +CY+ H H +
Sbjct: 8 TCNECK----HHVETRWHCTVCEDYDLCINCYNTKSHT--HKMVKWGLG 50
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId:
59405]}
Length = 80
Score = 28.6 bits (63), Expect = 0.40
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 72 IKHETISCDACQDERSCIVGTRYSCIECSNYDLCASCYHGDE 113
I + +CDAC +E T I + C+ C +
Sbjct: 4 INDDCTACDACVEECPNEAITPGDPIYVIDPTKCSECVGAFD 45
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 159
Score = 29.6 bits (66), Expect = 0.43
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 11/92 (11%)
Query: 30 TVVAVKSNVVSVIWDLGNKSSCYRVGSENAYDLQVYDSGPVG--IKHETISCDACQDERS 87
V VK + +L SC+ + P+G + E +
Sbjct: 4 AVAVVKKGGSFQLNELQGLKSCH-----TGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAA 58
Query: 88 CIVGTRYSCIECS----NYDLCASCYHGDEHD 115
SC+ + +LC C E+
Sbjct: 59 VARFFSASCVPGADKGQFPNLCRLCAGTGENK 90
>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 30.6 bits (68), Expect = 0.45
Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 24/163 (14%)
Query: 181 KVGKSYRSVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYI 240
+ G + V K W + +YR L+ VGSGA V + G ++ +
Sbjct: 1 RSGFYRQEVTKTAWEV--RAVYRD-------LQPVGSGAYGAVCSAVDGRTGAKVAIKKL 51
Query: 241 FR----RGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFEN 296
+R + + + L+H++ ++ L + + T +
Sbjct: 52 YRPFQSELFAKRAYRELRLLKHMRH-------ENVIGLLDVFTPDETLDDFTDFYLVMPF 104
Query: 297 CDNKWTFDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHGEW 339
L K + + + L ++ G
Sbjct: 105 MGTDL----GKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGII 143
>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 287
Score = 30.1 bits (67), Expect = 0.56
Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 28/148 (18%)
Query: 194 WSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYIFRRGDRVKVI-TD 252
W + + + + +G G VY+ T++ VK + D
Sbjct: 12 WEMERTD-ITMK-------HKLGGGQYGEVYEGVWKKYSLTVA----------VKTLKED 53
Query: 253 AKTLQHVQESSKGGWTPQLLNFLGHTGIVH---RVTEQTLVRVRFENCDNKWTFDPRALT 309
++ + + ++ + H +V T + + E D
Sbjct: 54 TMEVEEFLKEA------AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 107
Query: 310 KVDPFVAGDFVYFIPDELSAKEHLKGHG 337
A +Y SA E+L+
Sbjct: 108 NRQEVSAVVLLYMATQISSAMEYLEKKN 135
>d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 120
Score = 28.3 bits (62), Expect = 0.85
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 78 SCDACQDERSCIVGTRYSCIECSNYDLCASCYH 110
C +C C C++Y +SC
Sbjct: 57 ECQPQNSSETCFGSEADQCAACAHYKDSSSCVA 89
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 29.2 bits (65), Expect = 1.1
Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 18/129 (13%)
Query: 212 LKCVGSGASSMVYKSHLPVLGQTISTGYIFRRGDRVKVITDAKTLQHVQESSKGGWTPQL 271
++ +G GA V + V + ++ VK++ + + + K +
Sbjct: 10 VQTLGEGAYGEVQLAVNRVTEEAVA----------VKIVDMKRAVDCPENIKK---EICI 56
Query: 272 LNFLGHTGIVH---RVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDELS 328
L H +V E + + E C FD + D F ++
Sbjct: 57 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMA 114
Query: 329 AKEHLKGHG 337
+L G G
Sbjct: 115 GVVYLHGIG 123
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId:
1049]}
Length = 80
Score = 27.0 bits (59), Expect = 1.1
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 13/48 (27%)
Query: 72 IKHETISCDACQDERSCIVGTRYS-----------CIECSNYDLCASC 108
I E I+CD C E C G C EC + + C
Sbjct: 4 ITDECINCDVC--EPECPNGAISQGDETYVIEPSLCTECVGHYETSQC 49
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos)
[TaxId: 8839]}
Length = 159
Score = 28.0 bits (62), Expect = 1.4
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 20/99 (20%)
Query: 31 VVAVKSNVVSVIWDLGNKSSCY-RVGSENAYDLQVYDSGPVGIKHETISCDACQDE---- 85
V VK +I DL K+SC+ +G +++ + I I + +
Sbjct: 5 VAVVKKGTDFMIKDLRGKTSCHTGLGRSAGWNIPIG----TLIHRGDIEWEGIESGSVEQ 60
Query: 86 -------RSCIVGTRYS---CIECSNYDLCASCYHGDEH 114
SC+ G C +C C +
Sbjct: 61 AVAKFFSASCVPGATTEQKLCRQCKGDAKT-KCLRNAPY 98
>d1m6ba4 g.3.9.1 (A:480-580) Receptor protein-tyrosine kinase Erbb-3
Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 27.1 bits (59), Expect = 1.8
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 78 SCDACQDERSCIVGTRYSCIECSNYDLCASCY 109
C + +C +C +C+++ C
Sbjct: 57 ECQPMEGTATCNGSGSDTCAQCAHFRDGPHCV 88
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 350
Score = 28.2 bits (62), Expect = 1.9
Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 194 WSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQT-----ISTGYIFRRGDRVK 248
W +N ++ + + +K +G+G+ V G + + +
Sbjct: 30 WETPSQNTAQLDQFDR--IKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEH 87
Query: 249 VITDAKTLQHVQ 260
+ + + LQ V
Sbjct: 88 TLNEKRILQAVN 99
>d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374
{Burkholderia xenovorans [TaxId: 36873]}
Length = 128
Score = 27.1 bits (59), Expect = 2.2
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 424 PDVVEEVEAVMRE----VVRGNPSAVKAFLENNANLID 457
PD+V +V+A E +V + A+ A + +
Sbjct: 6 PDIVAQVQAAFVEYERALVENDIEAMNALFWHTPETVR 43
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 309
Score = 27.7 bits (61), Expect = 3.5
Identities = 21/155 (13%), Positives = 44/155 (28%), Gaps = 27/155 (17%)
Query: 188 SVAKVLWSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQT-----ISTGYIFR 242
VA++ + E ++ L+ +G G+ VY + + +S
Sbjct: 3 DVAELFFKDDPEKLFSD-------LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQS 55
Query: 243 RGDRVKVITDAKTLQHVQESSKGGWTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWT 302
+I + + LQ ++ P + + G + + E C +
Sbjct: 56 NEKWQDIIKEVRFLQKLRH-------PNTIQYRGC------YLREHTAWLVMEYCLGSAS 102
Query: 303 FDPRALTKVDPFVAGDFVYFIPDELSAKEHLKGHG 337
K P + L +L H
Sbjct: 103 DLLEVHKK--PLQEVEIAAVTHGALQGLAYLHSHN 135
>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 277
Score = 27.4 bits (60), Expect = 3.8
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 16/131 (12%)
Query: 212 LKCVGSGASSMVYKSHLPVLGQT-----ISTGYIFRRGDRVKVITDAKTLQHVQESSKGG 266
+ +G G S V+ + L + + ++ +A+ +
Sbjct: 12 GEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNH----- 66
Query: 267 WTPQLLNFLGHTGIVHRVTEQTLVRVRFENCDNKWTFDPRALTKVDPFVAGDFVYFIPDE 326
P ++ L + E D D + P + I D
Sbjct: 67 --PAIVAVYDT--GEAETPAGPLPYIVMEYVDGVTLRD--IVHTEGPMTPKRAIEVIADA 120
Query: 327 LSAKEHLKGHG 337
A +G
Sbjct: 121 CQALNFSHQNG 131
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 26.9 bits (59), Expect = 5.5
Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 26/147 (17%)
Query: 194 WSIGKENIYRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYIFRRGDRVKVITDA 253
W++ + IG + +G G VY + ++ +KV+ A
Sbjct: 3 WALED---FEIG-------RPLGKGKFGNVYLAREKQSKFILA----------LKVLFKA 42
Query: 254 KTLQHVQESSKGGWTPQLLNFLGHTGIVH---RVTEQTLVRVRFENCDNKWTFDPRALTK 310
+ L+ + ++ + L H I+ + T V + E + L K
Sbjct: 43 Q-LEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYR--ELQK 99
Query: 311 VDPFVAGDFVYFIPDELSAKEHLKGHG 337
+ F +I + +A +
Sbjct: 100 LSKFDEQRTATYITELANALSYCHSKR 126
>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 337
Score = 26.7 bits (58), Expect = 6.2
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 212 LKCVGSGASSMVYKSHLPVLGQT-----ISTGYIFRRGDRVKVITDAKTLQHVQ 260
LK +G G V G+ + I + + +T+++ LQ+ +
Sbjct: 10 LKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR 63
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human
(Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 26.3 bits (57), Expect = 7.8
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 25/116 (21%)
Query: 198 KENI---YRIGSYGKVDLKCVGSGASSMVYKSHLPVLGQTISTGYIFRRGDRVKVITDAK 254
+EN+ Y G + +GSG ++V K G + K I +
Sbjct: 5 QENVDDYYDTG-------EELGSGQFAVVKKCREKSTGLQYA----------AKFIKKRR 47
Query: 255 TLQHVQESSKGGWTP--QLLNFLGHTGIVH---RVTEQTLVRVRFENCDNKWTFDP 305
T + S+ +L + H ++ +T V + E FD
Sbjct: 48 TKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDF 103
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 25.5 bits (55), Expect = 8.3
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 78 SCDACQDERSCIVGTRYSCIECSNYDLCASC 108
C C ++ + C +C +C C
Sbjct: 50 RCILCGEQLGMLGSASVVCEDCKKN-VCTKC 79
>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 476
Score = 26.3 bits (57), Expect = 9.0
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 15/79 (18%)
Query: 45 LGNKSSCYRVGSENAYDLQVYDSGPVGIKHETISCDACQDERSCIVGTRYSCIECSNYDL 104
LG + Y + E+ + Y +GPV E C CQD S + + N L
Sbjct: 25 LGATNYIYVLNEEDLQKVAEYKTGPV---LEHPDCFPCQDCSSKANLSGGVWKDNINMAL 81
Query: 105 ------------CASCYHG 111
C S G
Sbjct: 82 VVDTYYDDQLISCGSVNRG 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.415
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,799,970
Number of extensions: 86334
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 26
Length of query: 464
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 376
Effective length of database: 1,199,356
Effective search space: 450957856
Effective search space used: 450957856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)