BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16234
(609 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 232/554 (41%), Positives = 328/554 (59%), Gaps = 17/554 (3%)
Query: 69 LYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYPK 128
+Y + FE+QFL + +Y E+++ LQ V++YM++ L EE R +LH S+ +
Sbjct: 211 VYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDE 270
Query: 129 VKAKCEQHMVADHLNFLQGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRDHICK 188
+ KCEQ ++ HL E ++ ++ DL MY L+ +++G+ L + HI
Sbjct: 271 LARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHN 330
Query: 189 QGLEAIS--GLSGDNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVINHK 246
QGL AI G + N +V+ +L VHKKY A V F+ D F+ ALDKAC IN+
Sbjct: 331 QGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNN 390
Query: 247 FDPKMP---SKSPEYLAKYCDMXXXXXXXXXXESEMDDKLSQSITVFKYIDDKDVFHKFY 303
KM SKSPE LA+YCD E+E++D L+Q + VFKYI+DKDVF KFY
Sbjct: 391 AVTKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFY 450
Query: 304 AKMLAKRLIHQQSTSMDGEEAMINKLKQACGYEFTNKFHRMLTDIKISGGLNEKFHSEFV 363
AKMLAKRL+HQ S S D E +MI+KLKQACG+E+T+K RM DI +S LNE+F
Sbjct: 451 AKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLT 510
Query: 364 KTNEIDLGIHFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWL 423
+ +DL FSI +L +GSWP + +F++P ELE+ F FY + +GRKL+WL
Sbjct: 511 NSEPLDLD--FSIQVLSSGSWPFQQSC--TFALPSELERSYQRFTAFYASRHSGRKLTWL 566
Query: 424 HNISQVELKLSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIAS 483
+ +S+ EL + K Y + TFQMAILL + DA T + + D + + +
Sbjct: 567 YQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQI 626
Query: 484 LVECKLLTSNKE-------ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSS 536
L++ KLL E EL DT I+L LGY NK+ ++ I+ ++ E QE E T +
Sbjct: 627 LLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKN 686
Query: 537 VDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYV 595
++EDRKL +QAAIVRIMK RK ++H L+ EVL+Q S F P + +IKKCI+ LI+K Y+
Sbjct: 687 IEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYL 746
Query: 596 ERTANSTDEYSYVA 609
ER D YSY+A
Sbjct: 747 ERVDGEKDTYSYLA 760
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/554 (41%), Positives = 328/554 (59%), Gaps = 17/554 (3%)
Query: 69 LYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYPK 128
+Y + FE+QFL + +Y E+++ LQ V++YM++ L EE R +LH S+ +
Sbjct: 227 VYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDE 286
Query: 129 VKAKCEQHMVADHLNFLQGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRDHICK 188
+ KCEQ ++ HL E ++ ++ DL MY L+ +++G+ L + HI
Sbjct: 287 LARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHN 346
Query: 189 QGLEAIS--GLSGDNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVINHK 246
QGL AI G + N +V+ +L VHKKY A V F+ D F+ ALDKAC IN+
Sbjct: 347 QGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNN 406
Query: 247 FDPKMP---SKSPEYLAKYCDMXXXXXXXXXXESEMDDKLSQSITVFKYIDDKDVFHKFY 303
KM SKSPE LA+YCD E+E++D L+Q + VFKYI+DKDVF KFY
Sbjct: 407 AVTKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFY 466
Query: 304 AKMLAKRLIHQQSTSMDGEEAMINKLKQACGYEFTNKFHRMLTDIKISGGLNEKFHSEFV 363
AKMLAKRL+HQ S S D E +MI+KLKQACG+E+T+K RM DI +S LNE+F
Sbjct: 467 AKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLT 526
Query: 364 KTNEIDLGIHFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWL 423
+ +DL FSI +L +GSWP + +F++P ELE+ F FY + +GRKL+WL
Sbjct: 527 NSEPLDLD--FSIQVLSSGSWPFQQSC--TFALPSELERSYQRFTAFYASRHSGRKLTWL 582
Query: 424 HNISQVELKLSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIAS 483
+ +S+ EL + K Y + TFQMAILL + DA T + + D + + +
Sbjct: 583 YQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQI 642
Query: 484 LVECKLLTSNKE-------ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSS 536
L++ KLL E EL DT I+L LGY NK+ ++ I+ ++ E QE E T +
Sbjct: 643 LLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKN 702
Query: 537 VDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYV 595
++EDRKL +QAAIVRIMK RK ++H L+ EVL+Q S F P + +IKKCI+ LI+K Y+
Sbjct: 703 IEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYL 762
Query: 596 ERTANSTDEYSYVA 609
ER D YSY+A
Sbjct: 763 ERVDGEKDTYSYLA 776
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 366
Score = 313 bits (803), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 167/365 (45%), Positives = 228/365 (62%), Gaps = 12/365 (3%)
Query: 253 SKSPEYLAKYCDMXXXXXXXXXXESEMDDKLSQSITVFKYIDDKDVFHKFYAKMLAKRLI 312
SKSPE LA+YCD E+E++D L+Q + VFKYI+DKDVF KFYAKMLAKRL+
Sbjct: 6 SKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLV 65
Query: 313 HQQSTSMDGEEAMINKLKQACGYEFTNKFHRMLTDIKISGGLNEKFHSEFVKTNEIDLGI 372
HQ S S D E +MI+KLKQACG+E+T+K RM DI +S LNE+F + +DL
Sbjct: 66 HQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLD- 124
Query: 373 HFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWLHNISQVELK 432
FSI +L +GSWP + +F++P ELE+ F FY + +GRKL+WL+ +S+ EL
Sbjct: 125 -FSIQVLSSGSWPFQQSC--TFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELV 181
Query: 433 LSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492
+ K Y + TFQMAILL + DA T + + D + + + L++ KLL
Sbjct: 182 TNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVL 241
Query: 493 NKE-------ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYL 545
E EL DT I+L LGY NK+ ++ I+ ++ E QE E T +++EDRKL +
Sbjct: 242 EDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLI 301
Query: 546 QAAIVRIMKSRKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTANSTDE 604
QAAIVRIMK RK ++H L+ EVL+Q S F P + +IKKCI+ LI+K Y+ER D
Sbjct: 302 QAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDT 361
Query: 605 YSYVA 609
YSY+A
Sbjct: 362 YSYLA 366
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|C Chain C, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|E Chain E, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|G Chain G, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
Length = 368
Score = 306 bits (784), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/365 (45%), Positives = 226/365 (61%), Gaps = 12/365 (3%)
Query: 253 SKSPEYLAKYCDMXXXXXXXXXXESEMDDKLSQSITVFKYIDDKDVFHKFYAKMLAKRLI 312
SKSPE LA+YCD E+E++D L+Q + FK I+DKDVF KFYAKMLAKRL+
Sbjct: 8 SKSPEELARYCDSLLKKSSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLAKRLV 67
Query: 313 HQQSTSMDGEEAMINKLKQACGYEFTNKFHRMLTDIKISGGLNEKFHSEFVKTNEIDLGI 372
HQ S S D E +MI+KLKQACG+E+T+K RM DI +S LNE+F + +DL
Sbjct: 68 HQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLD- 126
Query: 373 HFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWLHNISQVELK 432
FSI +L +GSWP + +F++P ELE+ F FY + +GRKL+WL+ +S+ EL
Sbjct: 127 -FSIQVLSSGSWPFQQSC--TFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELV 183
Query: 433 LSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492
+ K Y + TFQMAILL + DA T + + D + + + L++ KLL
Sbjct: 184 TNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVL 243
Query: 493 NKE-------ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYL 545
E EL DT I+L LGY NK+ ++ I+ ++ E QE E T +++EDRKL +
Sbjct: 244 EDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLI 303
Query: 546 QAAIVRIMKSRKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTANSTDE 604
QAAIVRIMK RK ++H L+ EVL+Q S F P + +IKKCI+ LI+K Y+ER D
Sbjct: 304 QAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDT 363
Query: 605 YSYVA 609
YSY+A
Sbjct: 364 YSYLA 368
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 166/547 (30%), Positives = 285/547 (52%), Gaps = 17/547 (3%)
Query: 68 HLYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYP 127
+Y D FE +FLE + Y +E KL+Q V +Y+ V + L EE +R + +L ++
Sbjct: 207 QIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQK 266
Query: 128 KVKAKCEQHMVADHLN-FLQGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRDHI 186
+ A E+ ++ +HL LQ ++ E R DL+ +Y L VR G+ +L+ ++I
Sbjct: 267 SLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYI 326
Query: 187 CKQGLEAISGLSGDNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVINHK 246
G + D V+ +L K + F ++ F+ A+ +A + IN
Sbjct: 327 KAFGSTIVINPEKDKT---MVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFIN-- 381
Query: 247 FDPKMPSKSPEYLAKYCDMXXXXXXXXXXESEMDDKLSQSITVFKYIDDKDVFHKFYAKM 306
K P+K E +AKY D + E++ L + + +F++I KDVF FY K
Sbjct: 382 ---KRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKD 438
Query: 307 LAKRLIHQQSTSMDGEEAMINKLKQACGYEFTNKFHRMLTDIKISGGLNEKFHSEFVKTN 366
LAKRL+ +S S+D E++M++KLK CG FT+K M D+++S + +F ++++
Sbjct: 439 LAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQF-KQYMQNQ 497
Query: 367 EIDLGIHFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWLHNI 426
+ I ++NIL G WP V +P E+ K +F+ FY G+ +GRKL W +
Sbjct: 498 NVPGNIELTVNILTMGYWP--TYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTL 555
Query: 427 SQVELKLSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLV- 485
LK + + + + FQ +LL+F + + + +I+ + ++ R + SL
Sbjct: 556 GHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLAC 615
Query: 486 -ECKLLTSNK--EELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRK 542
+ ++L N +++ + + N + +K ++KI+ KET +E T V +DR+
Sbjct: 616 GKARVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQ 675
Query: 543 LYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANST 602
+ AAIVRIMK RK + HN L+ EV +Q K F + +KK IESLID++Y+ER +
Sbjct: 676 YQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK-FPVKPADLKKRIESLIDRDYMERDKENP 734
Query: 603 DEYSYVA 609
++Y+Y+A
Sbjct: 735 NQYNYIA 741
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 166/547 (30%), Positives = 285/547 (52%), Gaps = 17/547 (3%)
Query: 68 HLYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYP 127
+Y D FE +FLE + Y +E KL+Q V +Y+ V + L EE +R + +L ++
Sbjct: 192 QIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQK 251
Query: 128 KVKAKCEQHMVADHLN-FLQGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRDHI 186
+ A E+ ++ +HL LQ ++ E R DL+ +Y L VR G+ +L+ ++I
Sbjct: 252 SLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYI 311
Query: 187 CKQGLEAISGLSGDNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVINHK 246
G + D V+ +L K + F ++ F+ A+ +A + IN
Sbjct: 312 KAFGSTIVINPEKDKT---MVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFIN-- 366
Query: 247 FDPKMPSKSPEYLAKYCDMXXXXXXXXXXESEMDDKLSQSITVFKYIDDKDVFHKFYAKM 306
K P+K E +AKY D + E++ L + + +F++I KDVF FY K
Sbjct: 367 ---KRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKD 423
Query: 307 LAKRLIHQQSTSMDGEEAMINKLKQACGYEFTNKFHRMLTDIKISGGLNEKFHSEFVKTN 366
LAKRL+ +S S+D E++M++KLK CG FT+K M D+++S + +F ++++
Sbjct: 424 LAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQF-KQYMQNQ 482
Query: 367 EIDLGIHFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWLHNI 426
+ I ++NIL G WP V +P E+ K +F+ FY G+ +GRKL W +
Sbjct: 483 NVPGNIELTVNILTMGYWP--TYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTL 540
Query: 427 SQVELKLSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLV- 485
LK + + + + FQ +LL+F + + + +I+ + ++ R + SL
Sbjct: 541 GHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLAC 600
Query: 486 -ECKLLTSNK--EELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRK 542
+ ++L N +++ + + N + +K ++KI+ KET +E T V +DR+
Sbjct: 601 GKARVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQ 660
Query: 543 LYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANST 602
+ AAIVRIMK RK + HN L+ EV +Q K F + +KK IESLID++Y+ER +
Sbjct: 661 YQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK-FPVKPADLKKRIESLIDRDYMERDKENP 719
Query: 603 DEYSYVA 609
++Y+Y+A
Sbjct: 720 NQYNYIA 726
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 244 bits (624), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 174/550 (31%), Positives = 280/550 (50%), Gaps = 19/550 (3%)
Query: 66 DQHLYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSS 125
D +Y D FE +FLE + Y +E +L+Q V +Y+ V + L EE +R + +L S+
Sbjct: 206 DLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHST 265
Query: 126 YPKVKAKCEQHMVADHLN-FLQGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRD 184
+ A E+ ++ +HL LQ ++ E R DLA MY L VR G L+ +
Sbjct: 266 QKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSE 325
Query: 185 HICKQGLEAISGLSGDNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVIN 244
+I G + D V+++L K ++ F ++ F+ + ++ + IN
Sbjct: 326 YIKTFGTAIVINPEKDK---DMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFIN 382
Query: 245 HKFDPKMPSKSPEYLAKYCDMXXXXXXXXXXESEMDDKLSQSITVFKYIDDKDVFHKFYA 304
K P+K E +AK+ D + E++ L + + +F++I KDVF FY
Sbjct: 383 -----KRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYK 437
Query: 305 KMLAKRLIHQQSTSMDGEEAMINKLKQACGYEFTNKFHRMLTDIKISGGLNEKFHSEFVK 364
K LAKRL+ +S S+D E++M++KLK CG FT+K M D+++S + F
Sbjct: 438 KDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHM-- 495
Query: 365 TNEIDLG-IHFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWL 423
N+ D G I ++NIL G WP T + P E+ K +F+ FY G+ +GRKL W
Sbjct: 496 QNQSDSGPIDLTVNILTMGYWP-TYTPMEVHLTP-EMIKLQEVFKAFYLGKHSGRKLQWQ 553
Query: 424 HNISQVELKLSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIAS 483
+ LK + + + FQ +LL+F + D + +I+ + ++ R + S
Sbjct: 554 TTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQS 613
Query: 484 LVECK---LLTSNKEELTEDTE-IRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDE 539
L K L+ S K + ED + N + +K ++KI+ KET +E T V +
Sbjct: 614 LACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQ 673
Query: 540 DRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599
DR+ + AAIVRIMK RK + HN L+ E+ +Q K F +KK IESLID++Y+ER
Sbjct: 674 DRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK-FPVKPGDLKKRIESLIDRDYMERDK 732
Query: 600 NSTDEYSYVA 609
++ ++Y YVA
Sbjct: 733 DNPNQYHYVA 742
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 244 bits (624), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 174/550 (31%), Positives = 280/550 (50%), Gaps = 19/550 (3%)
Query: 66 DQHLYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSS 125
D +Y D FE +FLE + Y +E +L+Q V +Y+ V + L EE +R + +L S+
Sbjct: 223 DLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHST 282
Query: 126 YPKVKAKCEQHMVADHLN-FLQGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRD 184
+ A E+ ++ +HL LQ ++ E R DLA MY L VR G L+ +
Sbjct: 283 QKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSE 342
Query: 185 HICKQGLEAISGLSGDNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVIN 244
+I G + D V+++L K ++ F ++ F+ + ++ + IN
Sbjct: 343 YIKTFGTAIVINPEKDK---DMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFIN 399
Query: 245 HKFDPKMPSKSPEYLAKYCDMXXXXXXXXXXESEMDDKLSQSITVFKYIDDKDVFHKFYA 304
K P+K E +AK+ D + E++ L + + +F++I KDVF FY
Sbjct: 400 -----KRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYK 454
Query: 305 KMLAKRLIHQQSTSMDGEEAMINKLKQACGYEFTNKFHRMLTDIKISGGLNEKFHSEFVK 364
K LAKRL+ +S S+D E++M++KLK CG FT+K M D+++S + F
Sbjct: 455 KDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHM-- 512
Query: 365 TNEIDLG-IHFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWL 423
N+ D G I ++NIL G WP T + P E+ K +F+ FY G+ +GRKL W
Sbjct: 513 QNQSDSGPIDLTVNILTMGYWP-TYTPMEVHLTP-EMIKLQEVFKAFYLGKHSGRKLQWQ 570
Query: 424 HNISQVELKLSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIAS 483
+ LK + + + FQ +LL+F + D + +I+ + ++ R + S
Sbjct: 571 TTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQS 630
Query: 484 LVECK---LLTSNKEELTEDTE-IRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDE 539
L K L+ S K + ED + N + +K ++KI+ KET +E T V +
Sbjct: 631 LACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQ 690
Query: 540 DRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599
DR+ + AAIVRIMK RK + HN L+ E+ +Q K F +KK IESLID++Y+ER
Sbjct: 691 DRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK-FPVKPGDLKKRIESLIDRDYMERDK 749
Query: 600 NSTDEYSYVA 609
++ ++Y YVA
Sbjct: 750 DNPNQYHYVA 759
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|C Chain C, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 282
Score = 222 bits (566), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/274 (43%), Positives = 164/274 (59%), Gaps = 11/274 (4%)
Query: 253 SKSPEYLAKYCDMXXXXXXXXXXESEMDDKLSQSITVFKYIDDKDVFHKFYAKMLAKRLI 312
SKSPE LA+YCD E+E++D L+Q + FK I+DKDVF KFYAKMLAKRL+
Sbjct: 8 SKSPEELARYCDSLLKKSSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLAKRLV 67
Query: 313 HQQSTSMDGEEAMINKLKQACGYEFTNKFHRMLTDIKISGGLNEKFHSEFVKTNEIDLGI 372
HQ S S D E +MI+KLKQACG+E+T+K RM DI +S LNE+F + +DL
Sbjct: 68 HQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLD- 126
Query: 373 HFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWLHNISQVELK 432
FSI +L +GSWP + +F++P ELE+ F FY + +GRKL+WL+ +S+ EL
Sbjct: 127 -FSIQVLSSGSWPFQQSC--TFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELV 183
Query: 433 LSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492
+ K Y + TFQMAILL + DA T + + D + + + L++ KLL
Sbjct: 184 TNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVL 243
Query: 493 NKE-------ELTEDTEIRLNLGYNNKRTKLKIS 519
E EL DT I+L LGY NK+ ++ I+
Sbjct: 244 EDENANVDEVELKPDTLIKLYLGYKNKKLRVNIN 277
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 185/381 (48%), Gaps = 26/381 (6%)
Query: 253 SKSPEYLAKYCDMXXXXX--XXXXXESEMDDKLSQSITVFKYIDDKDVFHKFYAKMLAKR 310
SK PE LA YCDM E++ KL + + KY+ +KDVF +++ L +R
Sbjct: 4 SKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRR 63
Query: 311 LIHQQSTSMDGEEAMINKLKQ-ACGYEFTNKFHRMLTDIKISGGLNEKFHSEFVKTNEID 369
LI S + EE M+ L++ ++ NK RM DIK+S LN+ F E K N++
Sbjct: 64 LILDISADSEIEENMVEWLREVGMPADYVNKLARMFQDIKVSEDLNQAF-KEMHKNNKLA 122
Query: 370 LGI-HFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWLHNISQ 428
L +I IL AG+W + S+P ELE I E+FY +GRKL W H +S
Sbjct: 123 LPADSVNIKILNAGAWSRSSEKVF-VSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSN 181
Query: 429 VELKLSYLKRPYFVTMQTFQMAILLLFEK--NDAMTCGDIQTVLSLSQDQIGRHIASLVE 486
+ Y + + TFQ+A+L + + + ++ +++ L ++ R + SLV
Sbjct: 182 GIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241
Query: 487 CKLL----------TSNKEELTEDTEIRLNLGYN-------NKRTKLKISGAVQKETPQE 529
L ++ ++ TE T +N ++ KR K+ + G +Q T +
Sbjct: 242 FPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERM 301
Query: 530 IERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIES 588
E + + R L Q AI++IMK RK+I + L E++ K+ F P MIK+ IE
Sbjct: 302 REEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEW 361
Query: 589 LIDKNYVERTANSTDEYSYVA 609
LI+ Y+ R + + + Y+A
Sbjct: 362 LIEHKYIRRDESDINTFIYMA 382
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|D Chain D, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 179/381 (46%), Gaps = 26/381 (6%)
Query: 253 SKSPEYLAKYCD--MXXXXXXXXXXESEMDDKLSQSITVFKYIDDKDVFHKFYAKMLAKR 310
SK PE LA YCD + E++ KL + + KY+ +KDVF +++ L +R
Sbjct: 4 SKCPEELANYCDXLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFXRYHKAHLTRR 63
Query: 311 LIHQQSTSMDGEEAMINKLKQ-ACGYEFTNKFHRMLTDIKISGGLNEKFHSEFVKTNEID 369
LI S + EE + L++ ++ NK R DIK+S LN+ F E K N++
Sbjct: 64 LILDISADSEIEENXVEWLREVGXPADYVNKLARXFQDIKVSEDLNQAF-KEXHKNNKLA 122
Query: 370 LGI-HFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWLHNISQ 428
L +I IL AG+W + S+P ELE I E+FY +GRKL W H S
Sbjct: 123 LPADSVNIKILNAGAWSRSSEKVF-VSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLXSN 181
Query: 429 VELKLSYLKRPYFVTMQTFQMAILLLFEK--NDAMTCGDIQTVLSLSQDQIGRHIASLVE 486
+ Y + + TFQ+A+L + + + ++ +++ L ++ R + SLV
Sbjct: 182 GIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241
Query: 487 CKLL----------TSNKEELTEDTEIRLNLGYN-------NKRTKLKISGAVQKETPQE 529
L ++ ++ TE T +N ++ KR K+ + G +Q T +
Sbjct: 242 FPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERX 301
Query: 530 IERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIES 588
E + + R L Q AI++I K RK+I + L E++ K+ F P IK+ IE
Sbjct: 302 REEENEGIVQLRILRTQEAIIQIXKXRKKISNAQLQTELVEILKNXFLPQKKXIKEQIEW 361
Query: 589 LIDKNYVERTANSTDEYSYVA 609
LI+ Y+ R + + + Y A
Sbjct: 362 LIEHKYIRRDESDINTFIYXA 382
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 396
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 2/179 (1%)
Query: 69 LYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYPK 128
+Y + FE+QFL + +Y E+++ LQ V++YM++ L EE R +LH S+ +
Sbjct: 213 VYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDE 272
Query: 129 VKAKCEQHMVADHLNFLQGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRDHICK 188
+ KCEQ ++ HL E ++ ++ DL MY L+ +++G+ L + HI
Sbjct: 273 LARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHN 332
Query: 189 QGLEAIS--GLSGDNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVINH 245
QGL AI G + N +V+ +L VHKKY A V F+ D F+ ALDKAC IN+
Sbjct: 333 QGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINN 391
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 77
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 535 SSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKN 593
S+++EDRKL +QAAIVRIMK RK ++H L+ EVL+Q S F P + +IKKCI+ LI+K
Sbjct: 2 SNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKE 61
Query: 594 YVERTANSTDEYSYVA 609
Y+ER D YSY+A
Sbjct: 62 YLERVDGEKDTYSYLA 77
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue
Length = 92
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 520 GAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPS 578
A Q E+ E + T VD+DRK ++AAIVRIMKSRK+++HN L+ EV Q K+ F PS
Sbjct: 2 AAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPS 61
Query: 579 ISMIKKCIESLIDKNYVERTANSTDEYSYVA 609
+IKK IE LI++ Y+ RT Y+YVA
Sbjct: 62 PVVIKKRIEGLIEREYLARTPEDRKVYTYVA 92
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a
Resolution
Length = 391
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 68 HLYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHV---- 123
+Y D FE +L+ + +Y+++A LQ V YM+ L EE R++R+L
Sbjct: 196 QIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRREC 255
Query: 124 SSYPKVKAKCEQHMVADHLNFLQGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVR 183
+S + C +V + EC M+ L M+ L+ V GI ++ +
Sbjct: 256 NSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLE 315
Query: 184 DHICKQGLEAISGLSGDNIST---QFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACS 240
+HI GL + + + I+T ++ E + + ++ VKE F D F+ A DKA
Sbjct: 316 EHIISAGLADMVA-AAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYK 374
Query: 241 SVIN 244
+V+N
Sbjct: 375 AVVN 378
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of
Human Cul-4b
Length = 101
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 519 SGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPS 578
SG KET +E T V +DR+ + AAIVRIMK RK + HN L+ EV +Q K F
Sbjct: 6 SGIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK-FPVK 64
Query: 579 ISMIKKCIESLIDKNYVERTANSTDEYSYVA 609
+ +KK IESLID++Y+ER + ++Y+Y+A
Sbjct: 65 PADLKKRIESLIDRDYMERDKENPNQYNYIA 95
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
Length = 354
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 4/180 (2%)
Query: 68 HLYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYP 127
+Y D FE +FLE + Y +E KL+Q V +Y+ V + L EE +R + +L ++
Sbjct: 176 QIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQK 235
Query: 128 KVKAKCEQHMVADHLN-FLQGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRDHI 186
+ A E+ ++ +HL LQ ++ E R DL+ +Y L VR G+ +L+ ++I
Sbjct: 236 SLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYI 295
Query: 187 CKQGLEAISGLSGDNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVINHK 246
G + D Q +++ K + F ++ F+ A+ +A + IN +
Sbjct: 296 KAFGSTIVINPEKDKTMRQELDDF---KDKVDHIIDICFLKNEKFINAMKEAFETFINKR 352
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
Length = 410
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 10/197 (5%)
Query: 69 LYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYPK 128
+Y + FE FLEMS E+++ E+ K L + S Y+++V ++EE R + L S+
Sbjct: 200 VYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEP 259
Query: 129 VKAKCEQHMVADHLNFL----QGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRD 184
+ E+ +++ H+ + V M+ + DL MY L V G+ + + +
Sbjct: 260 IVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSS 319
Query: 185 HICKQGLEAISGLSGDNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVIN 244
++ +QG +S + + + + ++ F+ E F+ D+ F + +N
Sbjct: 320 YLREQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLN 379
Query: 245 HKFDPKMPSKSPEYLAK 261
+ S+SPEYLA+
Sbjct: 380 ------LNSRSPEYLAE 390
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 388
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 92/197 (46%), Gaps = 10/197 (5%)
Query: 69 LYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYPK 128
+Y + FE FLEMS E+++ E+ K L + S Y+++V ++EE R + L S+
Sbjct: 178 VYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEP 237
Query: 129 VKAKCEQHMVADHLNFL----QGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRD 184
+ E+ +++ H+ + V M+ + DL MY L V G+ + + +
Sbjct: 238 IVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSS 297
Query: 185 HICKQGLEAISGLSGDNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVIN 244
++ +QG +S + + + + ++ F+ E F+ D+ F + +N
Sbjct: 298 YLREQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLN 357
Query: 245 HKFDPKMPSKSPEYLAK 261
+ S+SPEYLA+
Sbjct: 358 ------LNSRSPEYLAE 368
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
Length = 88
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Query: 529 EIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQS-KSFAPSISMIKKCIE 587
E ER ++ +R+++L+A IVRIMK+++ + H L+ E ++QS + F +SM+K+ I+
Sbjct: 8 EDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAID 67
Query: 588 SLIDKNYVERTANSTDEYSYVA 609
SLI K Y++R + + Y+Y+A
Sbjct: 68 SLIQKGYLQR-GDDGESYAYLA 88
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|D Chain D, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|F Chain F, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|H Chain H, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|J Chain J, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
Length = 76
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Query: 535 SSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQS-KSFAPSISMIKKCIESLIDKN 593
S ++ +R+++L+A IVRIMK+++ + H L+ E ++QS + F +SM+K+ I+SLI K
Sbjct: 2 SELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKG 61
Query: 594 YVERTANSTDEYSYVA 609
Y++R + + Y+Y+A
Sbjct: 62 YLQR-GDDGESYAYLA 76
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|D Chain D, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 364
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 4/167 (2%)
Query: 69 LYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYPK 128
+Y + FE FLE S E+++ E+ K L + S Y+++V ++EE R L S+
Sbjct: 183 VYEEDFEAPFLEXSAEFFQXESQKFLAENSASVYIKKVEARINEEIERVXHCLDKSTEEP 242
Query: 129 VKAKCEQHMVADHLNFL----QGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRD 184
+ E+ +++ H + V + + DL Y L V G+ +
Sbjct: 243 IVKVVERELISKHXKTIVEXENSGLVHXLKNGKTEDLGCXYKLFSRVPNGLKTXCECXSS 302
Query: 185 HICKQGLEAISGLSGDNISTQFVENMLAVHKKYKAFVKELFSGDQSF 231
++ +QG +S + + + + ++ F+ E F+ D+ F
Sbjct: 303 YLREQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLF 349
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 86 YKSEASKLLQTCNVSQYMERVLQVLHEETNR--SVRFLHVSSYPKVKAKCEQHMVADHLN 143
Y S +SK+ N ++ ++ +++ N+ S+RF H++SYP K + D +N
Sbjct: 201 YYSHSSKVAADSN-GEFSDKYVKLTPTTVNQQVSMRFPHLASYPAFK-------LPDDVN 252
Query: 144 ---FLQGECVPMVAE 155
LQGE V + AE
Sbjct: 253 VDELLQGETVAIAAE 267
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 86 YKSEASKLLQTCNVSQYMERVLQVLHEETNR--SVRFLHVSSYPKVKAKCEQHMVADHLN 143
Y S +SK+ N ++ ++ +++ N+ S+RF H++SYP K + D +N
Sbjct: 44 YYSHSSKVAADSN-GEFSDKYVKLTPTTVNQQVSMRFPHLASYPAFK-------LPDDVN 95
Query: 144 ---FLQGECVPMVAE 155
LQGE V + AE
Sbjct: 96 VDELLQGETVAIAAE 110
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 86 YKSEASKLLQTCNVSQYMERVLQVLHEETNR--SVRFLHVSSYPKVKAKCEQHMVADHLN 143
Y S +SK+ N ++ ++ +++ N+ S+RF H++SYP K + D +N
Sbjct: 40 YYSHSSKVAADSN-GEFSDKYVKLTPTTVNQQVSMRFPHLASYPAFK-------LPDDVN 91
Query: 144 ---FLQGECVPMVAE 155
LQGE V + AE
Sbjct: 92 VDELLQGETVAIAAE 106
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 86 YKSEASKLLQTCNVSQYMERVLQVLHEETNR--SVRFLHVSSYPKVKAKCEQHMVADHLN 143
Y S +SK+ N ++ ++ +++ N+ S+RF H++SYP K + D +N
Sbjct: 38 YYSHSSKVAADSN-GEFSDKYVKLTPTTVNQQVSMRFPHLASYPAFK-------LPDDVN 89
Query: 144 ---FLQGECVPMVAE 155
LQGE V + AE
Sbjct: 90 VDELLQGETVAIAAE 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,209,571
Number of Sequences: 62578
Number of extensions: 621321
Number of successful extensions: 1668
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1576
Number of HSP's gapped (non-prelim): 34
length of query: 609
length of database: 14,973,337
effective HSP length: 105
effective length of query: 504
effective length of database: 8,402,647
effective search space: 4234934088
effective search space used: 4234934088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)