Query psy16234
Match_columns 609
No_of_seqs 257 out of 1013
Neff 8.3
Searched_HMMs 29240
Date Sat Aug 17 00:18:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 100.0 3E-122 1E-126 1055.2 55.2 596 10-609 1-760 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 100.0 3E-118 1E-122 1021.7 58.7 586 8-609 57-759 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 2.4E-83 8.2E-88 677.2 34.4 354 253-609 4-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 8.8E-46 3E-50 395.1 25.7 250 8-267 28-396 (410)
5 2wzk_A Cullin-5, CUL-5; UBL co 100.0 4.7E-43 1.6E-47 372.7 25.1 242 5-247 10-381 (391)
6 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 7.7E-42 2.6E-46 358.8 26.0 234 6-246 6-352 (354)
7 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 9.6E-43 3.3E-47 367.1 17.4 237 6-246 9-364 (364)
8 2do7_A Cullin-4B, CUL-4B; heli 99.9 3.2E-28 1.1E-32 202.8 5.2 93 516-609 3-95 (101)
9 3o2p_E Cell division control p 99.9 5.2E-27 1.8E-31 190.7 7.5 80 529-609 8-88 (88)
10 1iuy_A Cullin-3 homologue; win 99.9 9E-28 3.1E-32 197.4 2.8 87 523-609 5-92 (92)
11 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 3.8E-27 1.3E-31 187.0 5.0 75 535-609 2-77 (77)
12 2htj_A P fimbrial regulatory p 94.2 0.099 3.4E-06 41.3 6.4 59 450-508 4-62 (81)
13 1sfx_A Conserved hypothetical 92.8 0.11 3.6E-06 43.0 4.7 50 444-493 18-67 (109)
14 3cuo_A Uncharacterized HTH-typ 92.5 0.18 6.1E-06 41.0 5.5 49 445-493 23-71 (99)
15 1wi9_A Protein C20ORF116 homol 92.2 0.14 4.7E-06 39.1 4.0 56 547-609 10-65 (72)
16 3tgn_A ADC operon repressor AD 92.1 0.23 7.9E-06 43.4 6.1 50 443-493 35-84 (146)
17 3r0a_A Putative transcriptiona 92.0 0.15 5.2E-06 43.8 4.7 52 442-493 22-75 (123)
18 2fu4_A Ferric uptake regulatio 91.8 0.19 6.6E-06 39.6 4.8 51 443-493 14-71 (83)
19 1y0u_A Arsenical resistance op 91.8 0.34 1.2E-05 39.4 6.4 56 445-508 30-85 (96)
20 1qgp_A Protein (double strande 91.6 0.22 7.4E-06 39.0 4.7 56 448-506 16-74 (77)
21 3lmm_A Uncharacterized protein 91.5 0.074 2.5E-06 58.6 2.7 133 445-601 429-566 (583)
22 2heo_A Z-DNA binding protein 1 91.5 0.16 5.4E-06 38.6 3.8 46 447-492 11-57 (67)
23 3jth_A Transcription activator 91.4 0.45 1.5E-05 38.7 6.8 48 445-493 22-69 (98)
24 1xn7_A Hypothetical protein YH 91.3 0.19 6.6E-06 39.4 4.2 43 451-493 7-49 (78)
25 3hsr_A HTH-type transcriptiona 91.2 0.21 7.2E-06 43.6 4.8 50 444-493 34-83 (140)
26 2dk5_A DNA-directed RNA polyme 91.2 0.32 1.1E-05 39.4 5.5 52 442-493 16-69 (91)
27 3ech_A MEXR, multidrug resista 91.0 0.19 6.4E-06 43.9 4.4 51 443-493 34-84 (142)
28 3g3z_A NMB1585, transcriptiona 91.0 0.23 7.8E-06 43.5 4.9 50 444-493 29-78 (145)
29 3cdh_A Transcriptional regulat 90.9 0.37 1.3E-05 42.6 6.3 50 444-493 41-90 (155)
30 2e1c_A Putative HTH-type trans 90.8 0.29 9.9E-06 44.7 5.5 66 424-492 8-73 (171)
31 2jt1_A PEFI protein; solution 90.8 0.38 1.3E-05 37.7 5.3 45 450-494 8-58 (77)
32 2k02_A Ferrous iron transport 90.8 0.21 7.2E-06 40.0 4.0 43 451-493 7-49 (87)
33 3nrv_A Putative transcriptiona 90.7 0.31 1.1E-05 42.7 5.5 51 443-493 37-87 (148)
34 1tbx_A ORF F-93, hypothetical 90.4 0.26 8.8E-06 40.3 4.4 50 444-493 6-59 (99)
35 2d1h_A ST1889, 109AA long hypo 90.4 0.29 9.8E-06 40.3 4.8 50 444-493 19-69 (109)
36 3bpv_A Transcriptional regulat 90.4 0.32 1.1E-05 41.9 5.3 50 444-493 27-76 (138)
37 4hbl_A Transcriptional regulat 90.2 0.25 8.7E-06 43.5 4.5 50 444-493 39-88 (149)
38 1bja_A Transcription regulator 90.1 0.34 1.2E-05 39.4 4.7 50 442-491 12-62 (95)
39 3oop_A LIN2960 protein; protei 90.0 0.21 7.2E-06 43.6 3.8 50 444-493 35-84 (143)
40 2fa5_A Transcriptional regulat 89.9 0.39 1.3E-05 42.8 5.6 50 444-493 47-96 (162)
41 2frh_A SARA, staphylococcal ac 89.7 0.27 9.2E-06 42.3 4.1 52 443-494 34-87 (127)
42 2gxg_A 146AA long hypothetical 89.6 0.49 1.7E-05 41.2 5.9 49 444-493 35-83 (146)
43 1oyi_A Double-stranded RNA-bin 89.5 0.36 1.2E-05 38.1 4.2 44 450-494 21-64 (82)
44 1qbj_A Protein (double-strande 89.4 0.38 1.3E-05 38.0 4.4 57 448-507 12-71 (81)
45 2nnn_A Probable transcriptiona 89.4 0.35 1.2E-05 41.8 4.7 50 444-493 36-85 (140)
46 2qww_A Transcriptional regulat 89.4 0.34 1.2E-05 42.8 4.7 49 444-492 39-87 (154)
47 2fbh_A Transcriptional regulat 89.3 0.34 1.2E-05 42.2 4.6 50 444-493 35-85 (146)
48 1ub9_A Hypothetical protein PH 89.1 0.31 1.1E-05 39.5 3.9 48 445-492 15-62 (100)
49 3eco_A MEPR; mutlidrug efflux 89.0 0.39 1.3E-05 41.5 4.7 50 444-493 29-80 (139)
50 2a61_A Transcriptional regulat 88.9 0.39 1.3E-05 41.8 4.7 50 444-493 31-80 (145)
51 2v79_A DNA replication protein 88.9 0.4 1.4E-05 42.0 4.5 53 441-493 27-84 (135)
52 3bro_A Transcriptional regulat 88.8 0.51 1.7E-05 40.8 5.3 50 444-493 32-83 (141)
53 2pn6_A ST1022, 150AA long hypo 88.8 0.71 2.4E-05 40.8 6.4 49 445-493 2-50 (150)
54 1jgs_A Multiple antibiotic res 88.6 0.41 1.4E-05 41.3 4.5 50 444-493 32-81 (138)
55 3bj6_A Transcriptional regulat 88.6 0.42 1.4E-05 42.0 4.7 50 444-493 38-87 (152)
56 2pex_A Transcriptional regulat 88.6 0.43 1.5E-05 42.1 4.8 50 444-493 45-94 (153)
57 3bdd_A Regulatory protein MARR 88.6 0.42 1.4E-05 41.4 4.6 51 443-493 28-78 (142)
58 3k0l_A Repressor protein; heli 88.6 0.34 1.2E-05 43.4 4.1 50 444-493 44-93 (162)
59 3deu_A Transcriptional regulat 88.6 0.43 1.5E-05 43.0 4.8 50 444-493 51-101 (166)
60 3e6m_A MARR family transcripti 88.5 0.33 1.1E-05 43.4 4.0 50 444-493 51-100 (161)
61 3cjn_A Transcriptional regulat 88.5 0.44 1.5E-05 42.5 4.8 50 444-493 50-99 (162)
62 1p6r_A Penicillinase repressor 88.4 0.49 1.7E-05 37.1 4.5 51 443-493 6-60 (82)
63 2hr3_A Probable transcriptiona 88.2 0.46 1.6E-05 41.5 4.6 50 444-493 33-83 (147)
64 2rdp_A Putative transcriptiona 88.1 0.46 1.6E-05 41.7 4.6 50 444-493 40-89 (150)
65 2fbi_A Probable transcriptiona 88.1 0.4 1.4E-05 41.5 4.1 50 444-493 34-83 (142)
66 2eth_A Transcriptional regulat 88.0 0.46 1.6E-05 42.1 4.5 50 444-493 42-91 (154)
67 3lwf_A LIN1550 protein, putati 88.0 1.3 4.4E-05 39.9 7.4 58 448-508 31-89 (159)
68 2nyx_A Probable transcriptiona 87.9 0.39 1.3E-05 43.4 4.0 51 443-493 42-92 (168)
69 2obp_A Putative DNA-binding pr 87.8 0.63 2.2E-05 38.0 4.8 50 444-493 14-69 (96)
70 1ku9_A Hypothetical protein MJ 87.7 0.61 2.1E-05 40.7 5.2 50 444-493 24-74 (152)
71 3pqk_A Biofilm growth-associat 87.6 1.1 3.9E-05 36.6 6.4 60 445-507 22-81 (102)
72 1u2w_A CADC repressor, cadmium 87.6 0.61 2.1E-05 39.8 4.9 49 445-493 41-89 (122)
73 3jw4_A Transcriptional regulat 87.5 0.32 1.1E-05 42.8 3.1 50 444-493 39-90 (148)
74 3t8r_A Staphylococcus aureus C 87.5 1.3 4.5E-05 39.0 7.2 55 450-507 17-72 (143)
75 1r1u_A CZRA, repressor protein 87.5 0.71 2.4E-05 38.2 5.1 48 445-493 25-72 (106)
76 2w25_A Probable transcriptiona 87.5 0.69 2.4E-05 40.9 5.4 49 444-492 5-53 (150)
77 2oqg_A Possible transcriptiona 87.5 0.59 2E-05 39.0 4.7 48 445-493 20-67 (114)
78 3kp7_A Transcriptional regulat 87.4 0.37 1.3E-05 42.5 3.5 49 443-492 35-83 (151)
79 3bja_A Transcriptional regulat 87.2 0.3 1E-05 42.1 2.8 50 444-493 31-80 (139)
80 3f3x_A Transcriptional regulat 87.2 0.58 2E-05 40.7 4.6 50 443-493 34-83 (144)
81 3fm5_A Transcriptional regulat 87.2 0.61 2.1E-05 41.0 4.8 50 444-493 37-87 (150)
82 1lj9_A Transcriptional regulat 87.1 0.42 1.4E-05 41.6 3.7 50 444-493 27-76 (144)
83 2vn2_A DNAD, chromosome replic 86.9 0.81 2.8E-05 39.5 5.3 53 442-494 28-85 (128)
84 1s3j_A YUSO protein; structura 86.9 0.43 1.5E-05 42.1 3.7 50 444-493 35-84 (155)
85 3r4k_A Transcriptional regulat 86.8 0.67 2.3E-05 45.3 5.3 57 449-509 9-66 (260)
86 3s2w_A Transcriptional regulat 86.8 0.37 1.3E-05 42.9 3.2 50 444-493 48-97 (159)
87 2bv6_A MGRA, HTH-type transcri 86.7 0.35 1.2E-05 42.1 2.9 50 444-493 35-84 (142)
88 1sfu_A 34L protein; protein/Z- 86.6 1.5 5.1E-05 33.8 6.0 44 451-494 20-63 (75)
89 1z91_A Organic hydroperoxide r 86.4 0.44 1.5E-05 41.6 3.4 50 444-493 38-87 (147)
90 2cfx_A HTH-type transcriptiona 86.3 0.9 3.1E-05 39.9 5.4 49 444-492 3-51 (144)
91 3k69_A Putative transcription 86.2 0.85 2.9E-05 41.2 5.3 57 448-507 16-72 (162)
92 1i1g_A Transcriptional regulat 86.1 0.72 2.5E-05 40.2 4.7 49 445-493 3-51 (141)
93 2y75_A HTH-type transcriptiona 86.1 1.7 5.7E-05 37.3 6.9 48 458-508 24-71 (129)
94 1ylf_A RRF2 family protein; st 86.0 1.3 4.3E-05 39.3 6.3 57 448-508 18-74 (149)
95 2wte_A CSA3; antiviral protein 86.0 0.65 2.2E-05 45.0 4.7 50 444-493 150-199 (244)
96 3mq0_A Transcriptional repress 85.8 0.63 2.2E-05 45.9 4.6 54 450-508 34-88 (275)
97 2cyy_A Putative HTH-type trans 85.4 1 3.6E-05 39.8 5.4 50 444-493 5-54 (151)
98 1xd7_A YWNA; structural genomi 85.3 1.6 5.6E-05 38.4 6.6 55 448-508 13-67 (145)
99 3nqo_A MARR-family transcripti 85.3 0.73 2.5E-05 42.5 4.5 50 444-493 39-90 (189)
100 4b8x_A SCO5413, possible MARR- 85.3 0.74 2.5E-05 40.6 4.3 50 444-493 33-84 (147)
101 1xmk_A Double-stranded RNA-spe 85.3 0.6 2.1E-05 36.7 3.2 48 446-493 11-59 (79)
102 2cg4_A Regulatory protein ASNC 84.8 1 3.6E-05 39.8 5.1 49 444-492 6-54 (152)
103 2xrn_A HTH-type transcriptiona 84.8 1 3.5E-05 43.4 5.5 55 450-508 10-65 (241)
104 2fxa_A Protease production reg 84.5 0.61 2.1E-05 43.9 3.6 50 444-493 46-95 (207)
105 3boq_A Transcriptional regulat 84.3 0.47 1.6E-05 42.2 2.6 50 444-493 45-95 (160)
106 2dbb_A Putative HTH-type trans 84.2 1.1 3.9E-05 39.5 5.1 49 444-492 7-55 (151)
107 2pg4_A Uncharacterized protein 84.1 0.95 3.2E-05 36.5 4.1 44 448-491 17-62 (95)
108 2kko_A Possible transcriptiona 84.0 0.66 2.3E-05 38.6 3.2 45 448-493 27-71 (108)
109 2ia0_A Putative HTH-type trans 83.6 1.3 4.4E-05 40.3 5.3 51 442-492 13-63 (171)
110 4aik_A Transcriptional regulat 83.6 1.4 4.7E-05 39.0 5.4 50 444-493 29-79 (151)
111 2p5v_A Transcriptional regulat 83.6 1.4 4.8E-05 39.5 5.5 49 444-492 8-56 (162)
112 1okr_A MECI, methicillin resis 83.4 0.65 2.2E-05 39.4 3.0 51 443-493 7-61 (123)
113 2lkp_A Transcriptional regulat 83.4 1.3 4.4E-05 37.3 4.9 46 446-492 32-77 (119)
114 1mkm_A ICLR transcriptional re 83.3 1.6 5.3E-05 42.3 6.1 55 449-508 11-66 (249)
115 1xn7_A Hypothetical protein YH 83.0 1.3 4.4E-05 34.6 4.3 44 548-598 6-49 (78)
116 4fx0_A Probable transcriptiona 83.0 1.7 5.7E-05 38.3 5.7 48 444-491 31-83 (148)
117 1sd4_A Penicillinase repressor 83.0 0.99 3.4E-05 38.3 4.0 51 443-493 7-61 (126)
118 2o0y_A Transcriptional regulat 82.7 1.6 5.4E-05 42.6 5.9 54 450-508 27-81 (260)
119 3b73_A PHIH1 repressor-like pr 81.9 1.7 5.8E-05 36.5 4.9 50 444-493 11-62 (111)
120 4a5n_A Uncharacterized HTH-typ 81.9 2.1 7.3E-05 37.0 5.7 45 448-493 28-73 (131)
121 1r1t_A Transcriptional repress 81.7 2.5 8.5E-05 36.0 6.0 47 446-493 46-92 (122)
122 2g9w_A Conserved hypothetical 81.4 1.8 6.1E-05 37.6 5.2 50 444-493 7-61 (138)
123 3i4p_A Transcriptional regulat 81.1 2.7 9.2E-05 37.6 6.4 46 447-492 4-49 (162)
124 2xub_A DNA-directed RNA polyme 81.1 1.5 5.1E-05 47.6 5.5 129 456-600 29-162 (534)
125 2g7u_A Transcriptional regulat 80.9 2.1 7.2E-05 41.6 6.0 55 449-509 17-72 (257)
126 1p6r_A Penicillinase repressor 80.9 1.5 5.2E-05 34.2 4.1 59 546-608 11-69 (82)
127 3u2r_A Regulatory protein MARR 80.8 0.86 2.9E-05 40.9 2.9 50 444-493 44-95 (168)
128 2ia2_A Putative transcriptiona 80.8 1.8 6.1E-05 42.3 5.4 55 449-509 24-79 (265)
129 2k4b_A Transcriptional regulat 80.7 0.99 3.4E-05 37.1 3.0 61 545-609 36-96 (99)
130 2k02_A Ferrous iron transport 80.6 1.5 5E-05 35.1 3.8 45 548-599 6-50 (87)
131 3f6o_A Probable transcriptiona 79.9 1.8 6.3E-05 36.5 4.5 48 445-493 17-64 (118)
132 2hzt_A Putative HTH-type trans 79.4 3.4 0.00012 34.1 6.0 45 448-493 16-61 (107)
133 2jsc_A Transcriptional regulat 79.2 1.8 6.3E-05 36.5 4.3 49 444-493 19-67 (118)
134 2qvo_A Uncharacterized protein 78.9 1.3 4.5E-05 35.7 3.2 46 445-490 11-60 (95)
135 1on2_A Transcriptional regulat 78.4 2.4 8.1E-05 36.8 5.0 43 451-493 13-55 (142)
136 2qlz_A Transcription factor PF 78.3 5.2 0.00018 38.2 7.6 63 445-508 11-77 (232)
137 2yu3_A DNA-directed RNA polyme 78.1 2.3 8E-05 34.5 4.4 51 443-493 34-86 (95)
138 1q1h_A TFE, transcription fact 77.8 2.2 7.4E-05 35.3 4.3 43 451-493 23-66 (110)
139 3f6v_A Possible transcriptiona 77.0 2.2 7.7E-05 37.8 4.4 48 445-493 57-104 (151)
140 2p4w_A Transcriptional regulat 76.7 3 0.0001 39.0 5.4 63 445-508 14-79 (202)
141 2fu4_A Ferric uptake regulatio 76.6 3.7 0.00013 31.9 5.2 59 547-607 20-80 (83)
142 2x4h_A Hypothetical protein SS 76.6 3.1 0.00011 35.8 5.2 51 443-493 10-64 (139)
143 1uly_A Hypothetical protein PH 75.7 4.1 0.00014 37.7 6.0 49 444-493 18-66 (192)
144 2k4b_A Transcriptional regulat 75.6 0.76 2.6E-05 37.8 0.8 51 443-493 32-86 (99)
145 1z7u_A Hypothetical protein EF 74.7 2.5 8.4E-05 35.3 3.8 46 447-493 23-69 (112)
146 3df8_A Possible HXLR family tr 74.6 3.8 0.00013 34.1 5.0 48 445-493 26-76 (111)
147 1hsj_A Fusion protein consisti 74.2 2.5 8.6E-05 45.0 4.7 51 443-493 401-453 (487)
148 1p4x_A Staphylococcal accessor 73.7 3 0.0001 40.4 4.7 50 444-493 156-207 (250)
149 1yyv_A Putative transcriptiona 73.6 4.4 0.00015 34.9 5.3 47 446-493 35-82 (131)
150 1r7j_A Conserved hypothetical 73.2 7.1 0.00024 31.5 6.1 43 449-493 11-53 (95)
151 1tbx_A ORF F-93, hypothetical 72.8 3.5 0.00012 33.2 4.3 57 546-605 10-66 (99)
152 2fbk_A Transcriptional regulat 72.7 1.1 3.8E-05 40.8 1.3 50 444-493 67-119 (181)
153 2f2e_A PA1607; transcription f 72.7 6.3 0.00022 34.5 6.2 45 448-493 26-70 (146)
154 2fsw_A PG_0823 protein; alpha- 72.5 5 0.00017 33.0 5.2 43 450-493 29-72 (107)
155 1sd4_A Penicillinase repressor 70.9 3.1 0.00011 35.1 3.7 59 546-608 12-70 (126)
156 1qgp_A Protein (double strande 70.2 3.9 0.00013 31.7 3.7 53 546-605 16-71 (77)
157 1p4x_A Staphylococcal accessor 70.1 2.4 8.2E-05 41.1 3.0 51 443-493 31-83 (250)
158 2zkz_A Transcriptional repress 69.9 3.5 0.00012 33.4 3.6 47 445-492 26-72 (99)
159 3cuq_B Vacuolar protein-sortin 69.5 9.6 0.00033 36.0 7.0 85 394-494 113-202 (218)
160 2l02_A Uncharacterized protein 69.5 6.6 0.00022 30.7 4.7 42 450-491 12-54 (82)
161 1mzb_A Ferric uptake regulatio 68.9 5.6 0.00019 34.4 4.9 63 443-506 15-84 (136)
162 2fe3_A Peroxide operon regulat 68.8 5.4 0.00018 35.0 4.8 64 443-507 19-88 (145)
163 2jt1_A PEFI protein; solution 67.4 4.5 0.00015 31.4 3.5 54 541-601 5-60 (77)
164 2p5k_A Arginine repressor; DNA 67.0 7.9 0.00027 28.1 4.8 40 448-490 7-51 (64)
165 1fse_A GERE; helix-turn-helix 66.8 11 0.00038 28.1 5.7 41 443-485 11-51 (74)
166 1qbj_A Protein (double-strande 66.7 6.4 0.00022 30.9 4.3 53 546-605 12-67 (81)
167 1bby_A RAP30; average structur 66.4 9.2 0.00032 28.9 4.9 56 448-509 10-65 (69)
168 2htj_A P fimbrial regulatory p 65.9 8.3 0.00028 29.8 4.9 44 548-598 4-47 (81)
169 2xig_A Ferric uptake regulatio 65.5 7.4 0.00025 34.3 5.1 52 442-493 23-80 (150)
170 2o03_A Probable zinc uptake re 65.4 5.6 0.00019 34.1 4.2 50 444-493 9-64 (131)
171 4dhx_B Enhancer of yellow 2 tr 64.5 6.8 0.00023 32.1 4.2 58 11-68 39-98 (101)
172 1je8_A Nitrate/nitrite respons 64.3 12 0.00041 29.0 5.6 41 444-486 22-62 (82)
173 2w57_A Ferric uptake regulatio 63.2 6.6 0.00023 34.6 4.3 64 442-506 13-83 (150)
174 2g9w_A Conserved hypothetical 63.0 5.6 0.00019 34.4 3.7 60 545-608 10-70 (138)
175 1okr_A MECI, methicillin resis 62.6 6.2 0.00021 33.0 3.8 59 546-608 12-70 (123)
176 3r0a_A Putative transcriptiona 61.9 6.5 0.00022 33.3 3.9 49 544-599 26-76 (123)
177 2qlz_A Transcription factor PF 60.8 8.2 0.00028 36.8 4.7 43 450-493 169-211 (232)
178 3k2z_A LEXA repressor; winged 60.8 11 0.00038 34.6 5.6 51 444-494 3-58 (196)
179 3hrs_A Metalloregulator SCAR; 59.6 10 0.00035 35.5 5.2 44 450-493 10-53 (214)
180 1x3u_A Transcriptional regulat 59.2 16 0.00054 27.7 5.4 41 444-486 17-57 (79)
181 1bia_A BIRA bifunctional prote 59.0 14 0.00047 37.1 6.3 46 447-492 6-51 (321)
182 2v79_A DNA replication protein 58.8 6.7 0.00023 34.0 3.4 23 575-597 61-83 (135)
183 3c57_A Two component transcrip 58.7 13 0.00046 29.7 5.1 42 443-486 27-68 (95)
184 3ulq_B Transcriptional regulat 58.4 17 0.00058 28.9 5.5 43 442-486 28-70 (90)
185 1x19_A CRTF-related protein; m 58.0 14 0.00047 37.4 6.3 43 459-507 63-105 (359)
186 2r3s_A Uncharacterized protein 57.2 11 0.00038 37.4 5.3 43 459-507 38-80 (335)
187 2lnb_A Z-DNA-binding protein 1 57.1 11 0.00039 29.0 3.9 42 450-491 23-65 (80)
188 3cuo_A Uncharacterized HTH-typ 57.0 11 0.00038 29.9 4.3 54 545-605 25-78 (99)
189 3eyy_A Putative iron uptake re 56.9 8.3 0.00028 33.7 3.8 63 443-506 16-83 (145)
190 2b0l_A GTP-sensing transcripti 56.9 9.5 0.00032 31.2 3.8 43 451-493 33-76 (102)
191 3f8b_A Transcriptional regulat 56.8 22 0.00075 29.6 6.3 57 541-598 9-66 (116)
192 2h09_A Transcriptional regulat 56.6 15 0.00051 32.1 5.5 40 454-493 48-87 (155)
193 1tw3_A COMT, carminomycin 4-O- 56.4 12 0.0004 37.9 5.4 45 458-507 50-94 (360)
194 3dp7_A SAM-dependent methyltra 56.3 12 0.00042 38.0 5.5 50 452-507 41-91 (363)
195 2ip2_A Probable phenazine-spec 55.9 15 0.0005 36.7 5.9 43 459-506 40-82 (334)
196 2xvc_A ESCRT-III, SSO0910; cel 54.3 13 0.00043 26.9 3.5 37 456-492 21-57 (59)
197 1z6r_A MLC protein; transcript 53.5 18 0.00061 37.3 6.3 61 449-509 19-84 (406)
198 2l01_A Uncharacterized protein 53.0 17 0.00059 28.0 4.3 42 450-491 14-57 (77)
199 1tc3_C Protein (TC3 transposas 52.9 17 0.00057 24.2 4.1 35 449-485 12-46 (51)
200 3mwm_A ZUR, putative metal upt 52.4 16 0.00056 31.6 4.9 65 442-507 10-80 (139)
201 3i53_A O-methyltransferase; CO 52.1 21 0.00073 35.4 6.5 43 459-506 37-79 (332)
202 1qzz_A RDMB, aclacinomycin-10- 51.8 15 0.00052 37.2 5.4 36 458-493 47-82 (374)
203 3mcz_A O-methyltransferase; ad 51.7 18 0.0006 36.4 5.8 41 460-506 56-96 (352)
204 1v4r_A Transcriptional repress 51.4 4.5 0.00015 32.9 1.0 41 454-494 28-69 (102)
205 3tqn_A Transcriptional regulat 51.4 28 0.00096 28.7 6.0 39 455-493 27-66 (113)
206 1oks_A RNA polymerase alpha su 51.0 21 0.00071 25.1 4.0 46 305-350 4-49 (56)
207 1j5y_A Transcriptional regulat 50.9 16 0.00055 33.3 4.8 56 448-509 23-80 (187)
208 4a0z_A Transcription factor FA 49.2 15 0.00052 33.7 4.3 44 448-491 14-57 (190)
209 3kp7_A Transcriptional regulat 48.7 10 0.00035 32.8 3.0 51 545-603 39-93 (151)
210 2jpc_A SSRB; DNA binding prote 48.3 20 0.00067 25.6 4.0 35 450-486 5-39 (61)
211 3eyy_A Putative iron uptake re 48.1 15 0.00053 32.0 4.0 58 548-607 23-80 (145)
212 2rnj_A Response regulator prot 47.9 14 0.0005 29.1 3.5 41 444-486 30-70 (91)
213 3u1d_A Uncharacterized protein 47.4 27 0.00092 30.8 5.4 46 448-493 31-79 (151)
214 2p7v_B Sigma-70, RNA polymeras 47.3 41 0.0014 24.6 5.9 42 444-485 6-50 (68)
215 2ek5_A Predicted transcription 45.9 36 0.0012 29.0 5.9 40 455-494 22-62 (129)
216 2hoe_A N-acetylglucosamine kin 45.7 13 0.00043 38.2 3.6 58 451-509 25-86 (380)
217 3by6_A Predicted transcription 45.3 32 0.0011 29.1 5.5 40 455-494 29-69 (126)
218 3neu_A LIN1836 protein; struct 45.3 34 0.0012 28.8 5.7 38 457-494 33-71 (125)
219 3lst_A CALO1 methyltransferase 45.3 21 0.00073 35.8 5.2 43 459-507 54-96 (348)
220 1tty_A Sigma-A, RNA polymerase 44.6 41 0.0014 26.1 5.7 41 445-485 20-63 (87)
221 2vn2_A DNAD, chromosome replic 44.4 11 0.00039 32.1 2.5 26 575-600 61-86 (128)
222 2dk5_A DNA-directed RNA polyme 44.0 33 0.0011 27.3 5.0 45 546-597 22-68 (91)
223 3mwm_A ZUR, putative metal upt 43.6 33 0.0011 29.5 5.4 59 547-607 17-76 (139)
224 3i4p_A Transcriptional regulat 43.1 22 0.00076 31.4 4.4 47 545-598 4-50 (162)
225 2qww_A Transcriptional regulat 43.0 22 0.00076 30.6 4.3 45 546-597 43-87 (154)
226 2eth_A Transcriptional regulat 43.0 32 0.0011 29.6 5.4 48 545-599 45-92 (154)
227 3cuq_A Vacuolar-sorting protei 42.8 36 0.0012 32.3 5.8 51 444-494 152-202 (234)
228 3t72_q RNA polymerase sigma fa 42.7 32 0.0011 27.9 4.8 40 445-484 21-63 (99)
229 1mzb_A Ferric uptake regulatio 42.7 39 0.0013 28.9 5.7 52 547-600 21-74 (136)
230 3bja_A Transcriptional regulat 42.6 25 0.00085 29.5 4.5 46 546-598 35-80 (139)
231 1p4w_A RCSB; solution structur 42.5 31 0.0011 27.8 4.8 41 444-486 35-75 (99)
232 3hsr_A HTH-type transcriptiona 42.4 15 0.00052 31.2 3.1 49 545-600 37-85 (140)
233 3g3z_A NMB1585, transcriptiona 42.2 23 0.00078 30.2 4.2 49 545-600 32-80 (145)
234 3gwz_A MMCR; methyltransferase 41.4 19 0.00066 36.5 4.1 36 458-493 69-104 (369)
235 4hbl_A Transcriptional regulat 41.1 18 0.00061 31.2 3.3 49 545-600 42-90 (149)
236 1sfx_A Conserved hypothetical 40.6 18 0.00063 28.8 3.2 49 545-600 21-69 (109)
237 2w48_A Sorbitol operon regulat 40.2 29 0.00099 34.4 5.1 36 456-491 17-52 (315)
238 1xma_A Predicted transcription 40.1 36 0.0012 29.6 5.1 57 542-599 39-96 (145)
239 3oop_A LIN2960 protein; protei 40.1 17 0.00057 31.0 3.0 47 546-599 39-85 (143)
240 3k0l_A Repressor protein; heli 39.8 22 0.00075 31.1 3.8 50 544-600 46-95 (162)
241 1ku3_A Sigma factor SIGA; heli 39.7 53 0.0018 24.3 5.5 40 445-484 12-54 (73)
242 2fe3_A Peroxide operon regulat 39.4 39 0.0013 29.2 5.3 60 546-607 24-84 (145)
243 3cdh_A Transcriptional regulat 38.9 35 0.0012 29.4 4.9 49 545-600 44-92 (155)
244 3tgn_A ADC operon repressor AD 38.7 26 0.0009 29.7 4.1 47 546-600 40-86 (146)
245 2x48_A CAG38821; archeal virus 38.6 70 0.0024 22.0 5.7 24 459-482 30-53 (55)
246 3s2w_A Transcriptional regulat 38.5 20 0.00068 31.2 3.3 49 545-600 51-99 (159)
247 2fbh_A Transcriptional regulat 38.4 28 0.00097 29.4 4.2 49 545-600 38-87 (146)
248 1ku9_A Hypothetical protein MJ 38.3 29 0.001 29.4 4.3 47 546-599 28-75 (152)
249 3jth_A Transcription activator 38.0 35 0.0012 27.0 4.4 53 546-606 25-77 (98)
250 1oyi_A Double-stranded RNA-bin 38.0 36 0.0012 26.6 4.2 49 547-603 20-68 (82)
251 2frh_A SARA, staphylococcal ac 37.8 33 0.0011 28.7 4.4 46 546-598 39-86 (127)
252 3ech_A MEXR, multidrug resista 37.6 20 0.00069 30.4 3.1 50 544-600 37-86 (142)
253 3bro_A Transcriptional regulat 37.4 28 0.00094 29.3 3.9 47 546-599 36-84 (141)
254 1i1g_A Transcriptional regulat 37.2 37 0.0013 28.8 4.8 48 545-599 5-52 (141)
255 1z05_A Transcriptional regulat 37.0 26 0.00089 36.4 4.4 60 450-509 43-107 (429)
256 2b0l_A GTP-sensing transcripti 36.9 28 0.00095 28.3 3.6 54 546-606 30-85 (102)
257 3chm_A COP9 signalosome comple 36.9 24 0.00083 31.7 3.5 44 448-491 97-142 (169)
258 2xig_A Ferric uptake regulatio 36.3 43 0.0015 29.2 5.0 59 547-607 30-89 (150)
259 2nyx_A Probable transcriptiona 36.2 31 0.0011 30.3 4.2 47 546-599 47-93 (168)
260 3ryp_A Catabolite gene activat 36.1 38 0.0013 30.6 4.9 34 460-493 167-200 (210)
261 1xma_A Predicted transcription 36.1 33 0.0011 29.8 4.2 48 445-493 40-95 (145)
262 3e6m_A MARR family transcripti 36.0 27 0.00093 30.4 3.7 48 546-600 55-102 (161)
263 2bv6_A MGRA, HTH-type transcri 35.8 27 0.00093 29.5 3.6 49 545-600 38-86 (142)
264 4g6q_A Putative uncharacterize 35.6 38 0.0013 30.6 4.8 48 445-493 22-70 (182)
265 3to7_A Histone acetyltransfera 35.5 28 0.00094 33.7 3.8 43 447-492 194-237 (276)
266 2oz6_A Virulence factor regula 35.3 42 0.0014 30.2 5.1 34 460-493 164-197 (207)
267 2oqg_A Possible transcriptiona 35.3 33 0.0011 27.9 3.9 48 545-600 22-69 (114)
268 2w57_A Ferric uptake regulatio 35.3 37 0.0013 29.6 4.5 59 547-607 20-80 (150)
269 3cjn_A Transcriptional regulat 35.2 35 0.0012 29.6 4.4 47 546-599 54-100 (162)
270 2dbb_A Putative HTH-type trans 35.2 37 0.0013 29.3 4.5 47 545-598 10-56 (151)
271 3iuo_A ATP-dependent DNA helic 35.0 59 0.002 27.3 5.5 41 447-489 21-61 (122)
272 3nrv_A Putative transcriptiona 35.0 31 0.0011 29.4 3.9 48 546-600 42-89 (148)
273 4ham_A LMO2241 protein; struct 35.0 70 0.0024 27.1 6.2 40 455-494 32-72 (134)
274 3hug_A RNA polymerase sigma fa 34.4 67 0.0023 25.1 5.5 39 445-485 39-78 (92)
275 3c7j_A Transcriptional regulat 34.0 56 0.0019 30.8 5.9 41 454-494 43-83 (237)
276 2p5k_A Arginine repressor; DNA 34.0 63 0.0022 23.0 4.9 53 549-607 10-62 (64)
277 1jgs_A Multiple antibiotic res 33.8 32 0.0011 28.8 3.8 47 546-599 36-82 (138)
278 1ub9_A Hypothetical protein PH 33.7 32 0.0011 27.0 3.5 47 546-599 18-64 (100)
279 4ets_A Ferric uptake regulatio 33.6 54 0.0019 29.0 5.3 63 444-507 31-101 (162)
280 4ev0_A Transcription regulator 33.6 44 0.0015 30.3 5.0 34 460-493 163-196 (216)
281 3dv8_A Transcriptional regulat 33.6 46 0.0016 30.2 5.1 34 460-493 169-202 (220)
282 1ldd_A APC2WHB, anaphase promo 33.4 83 0.0028 24.0 5.4 59 541-599 5-68 (74)
283 1w7p_D VPS36P, YLR417W; ESCRT- 33.3 39 0.0013 36.5 4.9 50 445-494 493-549 (566)
284 3ke2_A Uncharacterized protein 33.3 49 0.0017 27.5 4.4 38 453-491 27-64 (117)
285 2cfx_A HTH-type transcriptiona 33.1 35 0.0012 29.3 3.9 46 546-598 7-52 (144)
286 3eco_A MEPR; mutlidrug efflux 33.1 29 0.001 29.1 3.4 48 545-599 32-81 (139)
287 3rkx_A Biotin-[acetyl-COA-carb 32.9 54 0.0018 32.7 5.8 55 449-507 6-62 (323)
288 2pn6_A ST1022, 150AA long hypo 32.8 40 0.0014 29.0 4.3 47 545-598 4-50 (150)
289 2o8x_A Probable RNA polymerase 32.7 80 0.0027 22.7 5.5 40 444-485 16-56 (70)
290 1ufm_A COP9 complex subunit 4; 32.7 68 0.0023 25.0 5.1 41 450-490 20-60 (84)
291 3e6c_C CPRK, cyclic nucleotide 32.6 52 0.0018 30.8 5.4 34 460-493 177-210 (250)
292 3la7_A Global nitrogen regulat 32.5 46 0.0016 31.1 5.0 34 460-493 193-226 (243)
293 3k2z_A LEXA repressor; winged 32.4 46 0.0016 30.3 4.8 55 541-602 6-61 (196)
294 2zcw_A TTHA1359, transcription 32.3 47 0.0016 29.8 4.9 34 460-493 146-179 (202)
295 2nnn_A Probable transcriptiona 32.3 32 0.0011 28.8 3.4 46 547-599 41-86 (140)
296 3iwz_A CAP-like, catabolite ac 32.3 46 0.0016 30.5 4.9 33 461-493 188-220 (230)
297 2gxg_A 146AA long hypothetical 32.3 52 0.0018 27.7 4.9 47 546-600 39-85 (146)
298 1lj9_A Transcriptional regulat 31.9 32 0.0011 29.1 3.4 47 546-599 31-77 (144)
299 3i71_A Ethanolamine utilizatio 31.9 1.4E+02 0.0049 21.4 6.2 44 458-507 16-59 (68)
300 3e97_A Transcriptional regulat 31.9 49 0.0017 30.4 5.1 34 460-493 175-208 (231)
301 2hr3_A Probable transcriptiona 31.8 46 0.0016 28.2 4.5 47 547-600 38-85 (147)
302 2gau_A Transcriptional regulat 31.7 49 0.0017 30.4 5.0 34 460-493 180-213 (232)
303 2o03_A Probable zinc uptake re 31.6 75 0.0026 26.8 5.8 58 548-607 15-73 (131)
304 1z91_A Organic hydroperoxide r 31.6 34 0.0012 29.0 3.6 46 548-600 44-89 (147)
305 3d0s_A Transcriptional regulat 31.5 51 0.0017 30.2 5.1 34 460-493 177-210 (227)
306 2o0m_A Transcriptional regulat 31.5 10 0.00034 38.5 0.0 49 444-492 18-66 (345)
307 3bpv_A Transcriptional regulat 31.4 28 0.00097 29.1 3.0 47 546-599 31-77 (138)
308 4ets_A Ferric uptake regulatio 31.4 66 0.0022 28.5 5.5 53 547-599 36-89 (162)
309 2hzt_A Putative HTH-type trans 31.4 72 0.0025 25.7 5.4 46 548-600 18-63 (107)
310 3bdd_A Regulatory protein MARR 31.4 36 0.0012 28.6 3.7 49 545-600 32-80 (142)
311 2p5v_A Transcriptional regulat 31.2 37 0.0013 29.8 3.8 46 546-598 12-57 (162)
312 1u5t_A Appears to BE functiona 30.9 41 0.0014 31.9 4.2 52 443-494 164-215 (233)
313 2fbi_A Probable transcriptiona 30.6 29 0.00099 29.2 2.9 49 545-600 37-85 (142)
314 3dkw_A DNR protein; CRP-FNR, H 30.3 41 0.0014 30.7 4.2 34 460-493 178-211 (227)
315 2fa5_A Transcriptional regulat 30.1 41 0.0014 29.1 3.9 48 545-599 50-97 (162)
316 2cg4_A Regulatory protein ASNC 30.1 40 0.0014 29.2 3.8 46 545-597 9-54 (152)
317 3b02_A Transcriptional regulat 30.0 46 0.0016 29.8 4.3 34 460-493 139-172 (195)
318 3boq_A Transcriptional regulat 29.9 30 0.001 29.9 3.0 48 545-599 48-96 (160)
319 3bj6_A Transcriptional regulat 29.9 39 0.0013 28.8 3.6 48 546-600 42-89 (152)
320 1stz_A Heat-inducible transcri 29.8 55 0.0019 32.9 5.2 50 445-494 16-72 (338)
321 3l7w_A Putative uncharacterize 29.7 61 0.0021 26.4 4.6 48 445-493 8-59 (108)
322 2pg4_A Uncharacterized protein 29.7 25 0.00086 27.7 2.2 46 552-604 23-70 (95)
323 3kcc_A Catabolite gene activat 29.7 59 0.002 30.7 5.3 34 460-493 217-250 (260)
324 2e1c_A Putative HTH-type trans 29.5 44 0.0015 29.9 4.0 47 545-598 28-74 (171)
325 2rdp_A Putative transcriptiona 29.5 40 0.0014 28.7 3.7 46 547-599 45-90 (150)
326 1zyb_A Transcription regulator 29.5 55 0.0019 30.2 5.0 34 460-493 186-219 (232)
327 2ozu_A Histone acetyltransfera 29.3 38 0.0013 32.8 3.6 32 457-491 211-242 (284)
328 3f8m_A GNTR-family protein tra 29.0 54 0.0019 31.2 4.8 53 544-606 22-75 (248)
329 2pex_A Transcriptional regulat 29.0 36 0.0012 29.2 3.2 46 547-599 50-95 (153)
330 3jw4_A Transcriptional regulat 28.9 29 0.00098 29.7 2.6 49 545-600 42-92 (148)
331 2ou2_A Histone acetyltransfera 28.7 47 0.0016 32.2 4.2 30 460-492 212-241 (280)
332 2d1h_A ST1889, 109AA long hypo 28.5 46 0.0016 26.4 3.7 43 551-600 29-71 (109)
333 2ia0_A Putative HTH-type trans 28.4 44 0.0015 29.8 3.8 47 545-598 18-64 (171)
334 1yg2_A Gene activator APHA; vi 28.4 60 0.002 29.1 4.8 55 544-599 2-57 (179)
335 3deu_A Transcriptional regulat 28.4 37 0.0013 29.8 3.3 48 546-600 55-103 (166)
336 2w25_A Probable transcriptiona 28.3 45 0.0016 28.7 3.8 47 545-598 8-54 (150)
337 1ft9_A Carbon monoxide oxidati 28.3 52 0.0018 30.1 4.5 34 460-493 163-196 (222)
338 2f2e_A PA1607; transcription f 28.2 56 0.0019 28.3 4.4 51 548-607 28-80 (146)
339 1u5t_B Defective in vacuolar p 28.2 34 0.0012 30.7 3.0 91 397-506 62-164 (169)
340 2cyy_A Putative HTH-type trans 28.2 48 0.0016 28.6 4.0 46 546-598 9-54 (151)
341 2fxa_A Protease production reg 27.5 44 0.0015 30.8 3.8 46 548-600 52-97 (207)
342 2pq8_A Probable histone acetyl 27.4 37 0.0013 32.9 3.2 40 449-491 196-236 (278)
343 2heo_A Z-DNA binding protein 1 27.4 48 0.0016 24.4 3.2 44 548-598 14-58 (67)
344 3fm5_A Transcriptional regulat 27.1 45 0.0015 28.4 3.6 48 546-600 41-89 (150)
345 1u2w_A CADC repressor, cadmium 27.0 59 0.002 27.0 4.2 51 548-605 46-96 (122)
346 2a61_A Transcriptional regulat 26.6 35 0.0012 28.8 2.7 48 545-599 34-81 (145)
347 3b73_A PHIH1 repressor-like pr 26.5 60 0.0021 26.8 4.0 48 545-599 14-63 (111)
348 2esh_A Conserved hypothetical 26.3 38 0.0013 28.1 2.8 48 445-493 12-68 (118)
349 4esb_A Transcriptional regulat 26.1 75 0.0026 26.2 4.6 55 541-598 6-61 (115)
350 2kko_A Possible transcriptiona 25.3 87 0.003 25.3 4.8 53 545-605 26-78 (108)
351 3mzy_A RNA polymerase sigma-H 25.3 73 0.0025 27.1 4.7 40 444-485 110-149 (164)
352 2fmy_A COOA, carbon monoxide o 25.2 60 0.002 29.6 4.3 34 460-493 167-200 (220)
353 1b4a_A Arginine repressor; hel 25.0 1.2E+02 0.004 26.5 5.8 58 545-608 6-63 (149)
354 2qc0_A Uncharacterized protein 25.0 39 0.0013 34.5 3.1 38 457-494 308-345 (373)
355 2q2k_A Hypothetical protein; p 24.8 37 0.0013 23.9 1.9 35 157-191 32-68 (70)
356 1s3j_A YUSO protein; structura 24.5 41 0.0014 28.8 2.8 48 546-600 39-86 (155)
357 3edp_A LIN2111 protein; APC883 24.3 96 0.0033 29.2 5.6 40 455-494 27-67 (236)
358 3clo_A Transcriptional regulat 24.3 76 0.0026 30.2 4.9 41 443-485 197-237 (258)
359 3hhh_A Transcriptional regulat 24.1 96 0.0033 25.6 4.9 56 540-598 9-65 (116)
360 3eqx_A FIC domain containing t 24.1 45 0.0015 34.1 3.3 44 451-494 302-345 (373)
361 1jko_C HIN recombinase, DNA-in 24.1 69 0.0024 21.2 3.4 30 451-482 14-43 (52)
362 1fp2_A Isoflavone O-methyltran 24.1 48 0.0017 33.1 3.6 45 459-506 50-97 (352)
363 3f2g_A Alkylmercury lyase; MER 23.8 89 0.003 29.3 5.0 38 448-485 24-61 (220)
364 3cta_A Riboflavin kinase; stru 23.8 66 0.0023 30.0 4.3 47 447-493 8-60 (230)
365 3nqo_A MARR-family transcripti 23.8 58 0.002 29.3 3.8 48 546-600 43-92 (189)
366 3bwg_A Uncharacterized HTH-typ 23.7 99 0.0034 29.1 5.6 41 454-494 22-63 (239)
367 2wv0_A YVOA, HTH-type transcri 23.6 75 0.0026 30.1 4.7 40 455-494 28-68 (243)
368 1on2_A Transcriptional regulat 23.5 56 0.0019 27.6 3.5 46 548-600 12-57 (142)
369 3k9t_A Putative peptidase; str 23.5 1.1E+02 0.0036 31.8 5.9 117 370-491 305-433 (435)
370 2fsw_A PG_0823 protein; alpha- 23.4 73 0.0025 25.6 4.0 45 548-600 29-74 (107)
371 2bgc_A PRFA; bacterial infecti 23.4 67 0.0023 29.8 4.3 34 460-493 169-203 (238)
372 1xsv_A Hypothetical UPF0122 pr 23.1 1.3E+02 0.0044 24.6 5.5 41 444-485 26-66 (113)
373 1eze_A Cholesteryl ester trans 23.1 31 0.0011 22.7 1.2 25 327-352 9-33 (38)
374 2co5_A Viral protein F93; vira 22.8 99 0.0034 24.9 4.6 43 557-600 23-65 (99)
375 2qq9_A Diphtheria toxin repres 22.7 88 0.003 29.2 4.9 34 460-493 24-57 (226)
376 4esf_A PADR-like transcription 22.5 1.2E+02 0.0043 24.9 5.3 48 445-493 10-63 (117)
377 3f8b_A Transcriptional regulat 22.5 1.3E+02 0.0044 24.8 5.4 47 446-493 12-66 (116)
378 3sxy_A Transcriptional regulat 22.3 98 0.0033 28.5 5.2 40 455-494 30-69 (218)
379 3pqk_A Biofilm growth-associat 22.3 92 0.0032 24.6 4.4 51 547-605 26-76 (102)
380 1l9l_A Granulysin; saposin fol 22.3 1.1E+02 0.0039 23.1 4.5 57 256-316 7-65 (74)
381 4esf_A PADR-like transcription 22.2 1.6E+02 0.0055 24.3 5.9 57 540-599 7-64 (117)
382 1s7o_A Hypothetical UPF0122 pr 22.2 98 0.0033 25.5 4.5 40 444-485 23-63 (113)
383 4aik_A Transcriptional regulat 22.1 35 0.0012 29.6 1.8 26 575-600 56-81 (151)
384 1fp1_D Isoliquiritigenin 2'-O- 22.0 49 0.0017 33.4 3.2 33 461-493 63-101 (372)
385 3l7w_A Putative uncharacterize 21.9 75 0.0026 25.8 3.7 55 541-599 6-60 (108)
386 1l3l_A Transcriptional activat 21.9 1.2E+02 0.0041 28.2 5.8 42 443-486 173-214 (234)
387 1nkl_A NK-lysin; saposin fold, 21.8 1.3E+02 0.0045 22.7 4.9 58 256-316 7-65 (78)
388 1q1h_A TFE, transcription fact 21.8 84 0.0029 25.3 4.1 45 547-598 21-66 (110)
389 1zg3_A Isoflavanone 4'-O-methy 21.8 55 0.0019 32.8 3.5 35 459-493 44-81 (358)
390 2pjp_A Selenocysteine-specific 21.6 86 0.0029 26.0 4.1 104 451-600 12-115 (121)
391 1hw1_A FADR, fatty acid metabo 21.5 76 0.0026 29.6 4.3 40 455-494 25-65 (239)
392 2p8t_A Hypothetical protein PH 21.5 1.1E+02 0.0038 28.1 5.1 52 442-494 13-64 (200)
393 3mhs_B Protein SUS1; multi-pro 21.4 97 0.0033 24.9 4.1 55 11-67 35-91 (96)
394 2pi2_A Replication protein A 3 21.2 20 0.00069 34.9 0.0 48 444-491 205-256 (270)
395 2hs5_A Putative transcriptiona 21.2 1.4E+02 0.0047 28.0 6.0 40 455-494 46-85 (239)
396 1fx7_A Iron-dependent represso 20.9 1E+02 0.0034 28.8 4.9 33 462-494 26-58 (230)
397 2gqq_A Leucine-responsive regu 20.8 11 0.00037 33.5 -1.9 48 444-491 11-58 (163)
398 1yg2_A Gene activator APHA; vi 20.7 1.5E+02 0.0052 26.3 5.9 46 447-493 3-56 (179)
399 1r1u_A CZRA, repressor protein 20.6 71 0.0024 25.6 3.3 49 545-601 27-75 (106)
400 1t6s_A Conserved hypothetical 20.5 1E+02 0.0035 27.4 4.5 34 453-486 15-50 (162)
401 3htu_A Vacuolar protein-sortin 20.5 1E+02 0.0035 23.8 3.9 31 458-488 25-63 (79)
402 1v4r_A Transcriptional repress 20.4 59 0.002 26.0 2.7 50 544-600 19-70 (102)
403 4a6d_A Hydroxyindole O-methylt 20.3 89 0.0031 31.3 4.7 36 458-493 41-76 (353)
404 2x4h_A Hypothetical protein SS 20.1 83 0.0028 26.4 3.8 45 548-599 21-65 (139)
405 1y0u_A Arsenical resistance op 20.1 89 0.003 24.4 3.8 45 546-599 33-77 (96)
406 3f8m_A GNTR-family protein tra 20.0 1.3E+02 0.0045 28.4 5.6 42 451-494 27-69 (248)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=2.9e-122 Score=1055.18 Aligned_cols=596 Identities=42% Similarity=0.706 Sum_probs=559.2
Q ss_pred hHhhHHHHHHHHHHHHhcCCCChhhhhhhhhhhhhhcccC------------------------CcccHHHHHHHHHhhh
Q psy16234 10 FNKTWGSLQETIQGVITLGNVRRATWNDRFSDIYSLCVAY------------------------PEPLADRLYQETKLFL 65 (609)
Q Consensus 10 fe~~W~~l~~~i~~i~~~~~~~~~~~~~~y~~vy~~c~~~------------------------~~~~~~~Ly~~~~~~l 65 (609)
||++|..|++||..|++.++++...||++|++||++|++. |.++|++||+++++++
T Consensus 1 f~~~W~~L~~ai~~I~~~~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (760)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHHHHHHHH
Confidence 7999999999999999977999999999999999999986 5569999999999887
Q ss_pred hhh-----------------------------------------------------------------------------
Q psy16234 66 DQH----------------------------------------------------------------------------- 68 (609)
Q Consensus 66 ~~~----------------------------------------------------------------------------- 68 (609)
.+|
T Consensus 81 ~~~l~~~~~~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~~vf~~l~ 160 (760)
T 1ldj_A 81 KNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLN 160 (760)
T ss_dssp HHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTTTTT
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 766
Q ss_pred ----------------------------------c----------------cHHhhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16234 69 ----------------------------------L----------------YVDIFETQFLEMSGEWYKSEASKLLQTCN 98 (609)
Q Consensus 69 ----------------------------------~----------------Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s 98 (609)
+ |.+.||++||++|..||+.+|++|+++++
T Consensus 161 ~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~~~l~~~~ 240 (760)
T 1ldj_A 161 KQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNP 240 (760)
T ss_dssp THHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 78999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhHHHHhcccHHHHHHHHHhhhcccccHHHH
Q psy16234 99 VSQYMERVLQVLHEETNRSVRFLHVSSYPKVKAKCEQHMVADHLNFLQGECVPMVAEERRHDLANMYPLLRSVREGINIL 178 (609)
Q Consensus 99 ~~eYl~~v~~~l~~E~~r~~~yL~~~t~~kl~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l 178 (609)
+++||++|+.++++|.+||..||+++|.++|.++|+++||.+|++.|.+||..||++++.+||++||+||+|+++|+++|
T Consensus 241 ~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~~~~~~ll~~~~~~dL~~my~L~~rv~~gl~~l 320 (760)
T 1ldj_A 241 VTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGEL 320 (760)
T ss_dssp TTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCcCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccC--CCchHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCCC---CCCC
Q psy16234 179 IDAVRDHICKQGLEAISGLSG--DNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVINHKFDP---KMPS 253 (609)
Q Consensus 179 ~~~~~~~i~~~g~~~~~~~~~--~~~~~~~V~~ll~~~~k~~~li~~~F~~~~~f~~~l~~af~~~~N~~~~~---~~~~ 253 (609)
+..|++||++.|.+++..... ...|..||+.||++|++|+.++..||++|+.|..++++||+.|+|.+... ....
T Consensus 321 ~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~~~~~~~~~~~ 400 (760)
T 1ldj_A 321 KKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSS 400 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcccccccccc
Confidence 999999999999999987532 25789999999999999999999999999999999999999999976321 2347
Q ss_pred CchhHhHHHHHHHHhccCCCCChhhHhhhhhhhhheeeccCChHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHh
Q psy16234 254 KSPEYLAKYCDMLLKKSSKGLSESEMDDKLSQSITVFKYIDDKDVFHKFYAKMLAKRLIHQQSTSMDGEEAMINKLKQAC 333 (609)
Q Consensus 254 ~~~e~La~y~D~~lkk~~k~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~Lk~~~ 333 (609)
++||+||+|||.+||+|.++.+++|++..|++++.||+|+++||+|+.+|+++||+|||+++|++.|+|+.||++||.+|
T Consensus 401 ~~~E~la~y~D~~Lkk~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~ 480 (760)
T 1ldj_A 401 KSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQAC 480 (760)
T ss_dssp HHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHh
Confidence 89999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCCCcceEEEeeecCCCCCCCCCCCCccCchHHHHHHHHHHHHHhh
Q psy16234 334 GYEFTNKFHRMLTDIKISGGLNEKFHSEFVKTNEIDLGIHFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHG 413 (609)
Q Consensus 334 G~~~t~kl~~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~f~~~VLt~~~WP~~~~~~~~~~lP~~l~~~~~~F~~~Y~~ 413 (609)
|.+||+||++||+||..|++++..| ++++.+ +...+++|+|.|||+|+||..+. .++.+|++|..+++.|++||.+
T Consensus 481 G~~~t~kle~M~~Di~~S~~l~~~f-~~~~~~-~~~~~~~~~v~VLs~~~WP~~~~--~~~~lP~~l~~~~~~F~~fY~~ 556 (760)
T 1ldj_A 481 GFEYTSKLQRMFQDIGVSKDLNEQF-KKHLTN-SEPLDLDFSIQVLSSGSWPFQQS--CTFALPSELERSYQRFTAFYAS 556 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTT-TCCCSSEEEEEEEETTTSCCCCC--SCCCCCGGGHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH-HHHHhc-ccCCCCCeeEEecCCCCCCCCCC--CCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 777654 12257999999999999999854 5899999999999999999999
Q ss_pred cCCCcceeeecccceEEEEEEEeCccEEEEecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 414 QFNGRKLSWLHNISQVELKLSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 414 k~~~RkL~W~~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|+||+|+|+|++|+|+|+++|+++.++++||++||+||++||+.+++|+++|++.||+++++++++|++|++.|||.+.
T Consensus 557 ~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~k~~iL~~~ 636 (760)
T 1ldj_A 557 RHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLE 636 (760)
T ss_dssp TCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEECS
T ss_pred hCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcceeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred -------CCCCCCCCEEEEecCCCCCcceEEeccccccCChhHHhhhhhhHHHHhhhhhhhhhhhhhccccCCChHHHHH
Q psy16234 494 -------KEELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQ 566 (609)
Q Consensus 494 -------~~~~~~~~~f~lN~~F~~~~~ki~i~~~~~~~~~~e~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~ 566 (609)
++++.+++.|++|.+|++++.||+|+.+.++++++|.+.+++.+++||+..|+||||||||+||+|+|++|+.
T Consensus 637 ~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ 716 (760)
T 1ldj_A 637 DENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLG 716 (760)
T ss_dssp CTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHH
T ss_pred CCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHH
Confidence 2567889999999999999999999877677777778888899999999999999999999999999999999
Q ss_pred HHHHhhcC-CCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q psy16234 567 EVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 609 (609)
Q Consensus 567 ~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yia 609 (609)
+|++++++ |+|++.+||+|||+|||||||+|+++|+++|+|+|
T Consensus 717 ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 717 EVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 99999998 99999999999999999999999999999999998
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=3.2e-118 Score=1021.69 Aligned_cols=586 Identities=30% Similarity=0.512 Sum_probs=552.2
Q ss_pred cChHhhHHHHHHHHHHHHhcCCCChhhhhhhhhhhhhhcccCCcccHHHHHHHHHhhhhhh-------------------
Q psy16234 8 VDFNKTWGSLQETIQGVITLGNVRRATWNDRFSDIYSLCVAYPEPLADRLYQETKLFLDQH------------------- 68 (609)
Q Consensus 8 ~~fe~~W~~l~~~i~~i~~~~~~~~~~~~~~y~~vy~~c~~~~~~~~~~Ly~~~~~~l~~~------------------- 68 (609)
..||++|..|++||+.|++.++.+ ..|+++|+.||++|++.+ |++||+++++++++|
T Consensus 57 ~~~e~~W~~L~~ai~~I~~~~~~~-~s~e~LY~~vy~lc~~k~---~~~LY~~l~~~~~~~l~~~~~~l~~~~~~~~~~L 132 (759)
T 2hye_C 57 NYTQDTWRKLHEAVRAVQSSTSIR-YNLEELYQAVENLCSHKV---SPMLYKQLRQACEDHVQAQILPFREDSLDSVLFL 132 (759)
T ss_dssp CTTTTHHHHHHHHHHTTSTTCCCS-SCHHHHHHHHHHHCCTTT---HHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 457999999999999999876543 349999999999999874 899999998776554
Q ss_pred --------------------------------------------------------------------------------
Q psy16234 69 -------------------------------------------------------------------------------- 68 (609)
Q Consensus 69 -------------------------------------------------------------------------------- 68 (609)
T Consensus 133 ~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge~id~~ 212 (759)
T 2hye_C 133 KKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRS 212 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhcCCCCcHH
Confidence
Q ss_pred -------------ccHHhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHH
Q psy16234 69 -------------LYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYPKVKAKCEQ 135 (609)
Q Consensus 69 -------------~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~eYl~~v~~~l~~E~~r~~~yL~~~t~~kl~~~l~~ 135 (609)
+|.+.||++||++|.+||+.++++|++++++++||++|+.++++|.+||..||+++|.++|.++|++
T Consensus 213 llk~vi~ml~~L~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~~~t~~~l~~~~~~ 292 (759)
T 2hye_C 213 LLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEK 292 (759)
T ss_dssp HHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-hhHHHHhcccHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHH
Q psy16234 136 HMVADHLNFLQG-ECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRDHICKQGLEAISGLSGDNISTQFVENMLAVH 214 (609)
Q Consensus 136 ~LI~~~~~~l~~-~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~V~~ll~~~ 214 (609)
+||.+|++.|.+ ||..||++++.+||++||+|++++++|++.++..|++||++.|.+++.... .+..||+.|+++|
T Consensus 293 ~Li~~~~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~~---~~~~~V~~ll~~~ 369 (759)
T 2hye_C 293 QLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE---KDKDMVQDLLDFK 369 (759)
T ss_dssp HHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGG---GTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHhcCcc---cHHHHHHHHHHHH
Confidence 999999999885 999999999999999999999999999999999999999999999996543 2457999999999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCCCCCCCCchhHhHHHHHHHHhccCCCCChhhHhhhhhhhhheeeccC
Q psy16234 215 KKYKAFVKELFSGDQSFMGALDKACSSVINHKFDPKMPSKSPEYLAKYCDMLLKKSSKGLSESEMDDKLSQSITVFKYID 294 (609)
Q Consensus 215 ~k~~~li~~~F~~~~~f~~~l~~af~~~~N~~~~~~~~~~~~e~La~y~D~~lkk~~k~~~~~e~~~~l~~i~~lf~~l~ 294 (609)
++|+.++..||++|+.|..++++||+.|+|.+ ..++||+||+|||.+||+|.|+.+++|++..|++++.||+|++
T Consensus 370 ~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~-----~~~~~E~la~y~D~~Lk~~~k~~~e~e~e~~L~~i~~lf~~i~ 444 (759)
T 2hye_C 370 DKVDHVIEVCFQKNERFVNLMKESFETFINKR-----PNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIH 444 (759)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTS-----CSHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCC-----CCchHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhhhhhhhcC
Confidence 99999999999999999999999999999975 2689999999999999999988888999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCCCcce
Q psy16234 295 DKDVFHKFYAKMLAKRLIHQQSTSMDGEEAMINKLKQACGYEFTNKFHRMLTDIKISGGLNEKFHSEFVKTNEIDLGIHF 374 (609)
Q Consensus 295 ~KD~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~Lk~~~G~~~t~kl~~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~f 374 (609)
+||+|+.+|+++||+|||+++|++.|+|+.||++||.+||.+||+||++||+||..|++++..| ++++...+...+++|
T Consensus 445 ~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f-~~~~~~~~~~~~~~~ 523 (759)
T 2hye_C 445 GKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHF-KQHMQNQSDSGPIDL 523 (759)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHH-HHHHHTTCCCCCCEE
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccCCCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999 777654433357899
Q ss_pred EEEeeecCCCCCCCCCCCCccCchHHHHHHHHHHHHHhhcCCCcceeeecccceEEEEEEEeCccEEEEecHHHHHHHHh
Q psy16234 375 SINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWLHNISQVELKLSYLKRPYFVTMQTFQMAILLL 454 (609)
Q Consensus 375 ~~~VLt~~~WP~~~~~~~~~~lP~~l~~~~~~F~~~Y~~k~~~RkL~W~~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLll 454 (609)
+|.|||+|+||..+. .++.+|++|..+++.|++||.++|+||+|+|+|++|+|+|+++|+++.++++||++||+||++
T Consensus 524 ~v~VLs~~~WP~~~~--~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLll 601 (759)
T 2hye_C 524 TVNILTMGYWPTYTP--MEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLM 601 (759)
T ss_dssp EEEEEETTTSCCCCC--CCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHH
T ss_pred EEEEeCCCCCCCCCC--CCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHHHHH
Confidence 999999999999865 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCHHHHHHHhCCCHHHHHHHHHHHH--hcCccccCC--CCCCCCCEEEEecCCCCCcceEEeccccccCChhHH
Q psy16234 455 FEKNDAMTCGDIQTVLSLSQDQIGRHIASLV--ECKLLTSNK--EELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEI 530 (609)
Q Consensus 455 Fn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~--~~~iL~~~~--~~~~~~~~f~lN~~F~~~~~ki~i~~~~~~~~~~e~ 530 (609)
||+.+++|+++|++.||+++++|+++|++|+ +.+||.+.| +++.+++.|.+|.+|++++.||+|+.+..+++.+|.
T Consensus 602 Fn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~~e~ 681 (759)
T 2hye_C 602 FNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQ 681 (759)
T ss_dssp TTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCHHHH
T ss_pred hcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeeccccCCceEEEeccccccccchhh
Confidence 9999999999999999999999999999999 678998876 678899999999999999999999977667788888
Q ss_pred hhhhhhHHHHhhhhhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q psy16234 531 ERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 609 (609)
Q Consensus 531 ~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yia 609 (609)
+.+++.+++||+..||||||||||+||+|+|++|+.+|+++++ |+|++.+||+|||+|||||||+|+++|+++|+|+|
T Consensus 682 ~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~-F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 682 VSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK-FPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS-SCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcccceecCCCCCCeeEecC
Confidence 8899999999999999999999999999999999999999999 99999999999999999999999999999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=2.4e-83 Score=677.20 Aligned_cols=354 Identities=34% Similarity=0.524 Sum_probs=323.8
Q ss_pred CCchhHhHHHHHHHHhcc--CCCCChhhHhhhhhhhhheeeccCChHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q psy16234 253 SKSPEYLAKYCDMLLKKS--SKGLSESEMDDKLSQSITVFKYIDDKDVFHKFYAKMLAKRLIHQQSTSMDGEEAMINKLK 330 (609)
Q Consensus 253 ~~~~e~La~y~D~~lkk~--~k~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~Lk 330 (609)
.++||+||+|||.+||+| +++.+++|++..|++++.||+|+++||+|+.+|+++||+|||+++|++.|+|+.||++||
T Consensus 4 ~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kLK 83 (382)
T 3dpl_C 4 SKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLR 83 (382)
T ss_dssp CCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 689999999999999997 477789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCc--hhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCC-CCCcceEEEeeecCCCCCCCCCCCCccCchHHHHHHHHH
Q psy16234 331 QACGY--EFTNKFHRMLTDIKISGGLNEKFHSEFVKTNEI-DLGIHFSINILQAGSWPLGPTVISSFSVPQELEKCIHMF 407 (609)
Q Consensus 331 ~~~G~--~~t~kl~~M~~Di~~S~~l~~~f~~~~~~~~~~-~~~~~f~~~VLt~~~WP~~~~~~~~~~lP~~l~~~~~~F 407 (609)
+||. +||++|++||+||..|++++..| ++++.+.+. ..+++|+|.|||+|+||..+. ..++.+|++|+.+++.|
T Consensus 84 -~cG~~~~ft~kle~M~kDi~~S~~l~~~f-~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~-~~~~~lP~~l~~~~~~F 160 (382)
T 3dpl_C 84 -EVGMPADYVNKLARMFQDIKVSEDLNQAF-KEMHKNNKLALPADSVNIKILNAGAWSRSSE-KVFVSLPTELEDLIPEV 160 (382)
T ss_dssp -HTTCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCCC--CCCGGGEEEEEEEHHHHCCCSC-CCCCCCCHHHHTTHHHH
T ss_pred -HcCCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCCceEEEEccCCcCCCCCC-CCCccCCHHHHHHHHHH
Confidence 9996 99999999999999999999999 776654331 136899999999999999853 25899999999999999
Q ss_pred HHHHhhcCCCcceeeecccceEEEEEEEeCccEEEEecHHHHHHHHhhcCC--CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy16234 408 EKFYHGQFNGRKLSWLHNISQVELKLSYLKRPYFVTMQTFQMAILLLFEKN--DAMTCGDIQTVLSLSQDQIGRHIASLV 485 (609)
Q Consensus 408 ~~~Y~~k~~~RkL~W~~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLllFn~~--~~lt~~ei~~~t~i~~~~l~~~L~~L~ 485 (609)
++||..+|+||+|+|+|++|+|+|+++++++.|+++||++||+||++||+. +++|+++|++.|||++++|+++|++|+
T Consensus 161 ~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~ 240 (382)
T 3dpl_C 161 EEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLV 240 (382)
T ss_dssp HHHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999985 899999999999999999999999997
Q ss_pred h-----cCccccCC-----CCCCCCCEEEEecCCCCC-----cceEEecccc--ccCChhHHhhhhhhHHHHhhhhhhhh
Q psy16234 486 E-----CKLLTSNK-----EELTEDTEIRLNLGYNNK-----RTKLKISGAV--QKETPQEIERTVSSVDEDRKLYLQAA 548 (609)
Q Consensus 486 ~-----~~iL~~~~-----~~~~~~~~f~lN~~F~~~-----~~ki~i~~~~--~~~~~~e~~~~~~~v~~~R~~~i~A~ 548 (609)
. .|||.+.| +++.+++.|.+|.+|++. .++++|+.+. +.++..+.+++++.+++||+..||||
T Consensus 241 ~~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~Aa 320 (382)
T 3dpl_C 241 AFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEA 320 (382)
T ss_dssp CCTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEE
Confidence 5 46888765 357789999999999861 2556665432 44566677788899999999999999
Q ss_pred hhhhhccccCCChHHHHHHHHHhhcC-CCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q psy16234 549 IVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 609 (609)
Q Consensus 549 IVRiMK~~k~l~~~~L~~~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yia 609 (609)
||||||+||+|+|++|+.+|++|+++ |.|++.+||+|||+|||||||+|+++|+++|+|+|
T Consensus 321 IVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 321 IIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred EehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 99999999999999999999999998 99999999999999999999999999999999998
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.8e-46 Score=395.14 Aligned_cols=250 Identities=23% Similarity=0.426 Sum_probs=218.4
Q ss_pred cChHhhHHHHHHHHHHHHhcCCCChhhhhhhhhhhhhhcccCCcccHHHHHHHHHhhhhhh-------------------
Q psy16234 8 VDFNKTWGSLQETIQGVITLGNVRRATWNDRFSDIYSLCVAYPEPLADRLYQETKLFLDQH------------------- 68 (609)
Q Consensus 8 ~~fe~~W~~l~~~i~~i~~~~~~~~~~~~~~y~~vy~~c~~~~~~~~~~Ly~~~~~~l~~~------------------- 68 (609)
.+||++|+.|++||..|++.++. ...|+++|+.||++|++. .|++||+++++++.+|
T Consensus 28 ~~~~~~W~~L~~ai~~I~~~~~~-~~s~eeLY~~vy~lc~~k---~g~~LY~~l~~~~~~~l~~~v~~~l~~~~~~~~L~ 103 (410)
T 4ap2_B 28 KYVNSIWDLLKNAIQEIQRKNNS-GLSFEELYRNAYTMVLHK---HGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQ 103 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCT-TCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTHHHHHHTTTTSSHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 56999999999999999987543 567999999999999975 7999999998877765
Q ss_pred --------------------------------------------------------------------------------
Q psy16234 69 -------------------------------------------------------------------------------- 68 (609)
Q Consensus 69 -------------------------------------------------------------------------------- 68 (609)
T Consensus 104 ~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge~id~~li 183 (410)
T 4ap2_B 104 TLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAI 183 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence
Q ss_pred ----------------ccHHhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHH
Q psy16234 69 ----------------LYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYPKVKAK 132 (609)
Q Consensus 69 ----------------~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~eYl~~v~~~l~~E~~r~~~yL~~~t~~kl~~~ 132 (609)
+|.+.||++||++|.+||+.+|++|++++++++||++|+.++++|.+||..||+++|.++|.++
T Consensus 184 k~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~sT~~kL~~~ 263 (410)
T 4ap2_B 184 RNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKV 263 (410)
T ss_dssp HHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHH
Confidence 3999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH----hhhHHHHhcccHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHH
Q psy16234 133 CEQHMVADHLNFLQ----GECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRDHICKQGLEAISGLSGDNISTQFVE 208 (609)
Q Consensus 133 l~~~LI~~~~~~l~----~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~V~ 208 (609)
|+++||.+|++.|. +||..||++++.+||++||+|++|+++|+++|+.+|++||++.|.+++........|..||+
T Consensus 264 ~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv~~~~~~~~~~~~V~ 343 (410)
T 4ap2_B 264 VERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEGKNPVDYRQ 343 (410)
T ss_dssp HHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHC------CHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhccccccChHHHHH
Confidence 99999999999996 59999999999999999999999999999999999999999999999998776667899999
Q ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCCCCCCCCCchhHhHHHHHHHH
Q psy16234 209 NMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVINHKFDPKMPSKSPEYLAKYCDMLL 267 (609)
Q Consensus 209 ~ll~~~~k~~~li~~~F~~~~~f~~~l~~af~~~~N~~~~~~~~~~~~e~La~y~D~~l 267 (609)
.||++|++|+.++..||++|+.|..++++||+.|+|.+ .+.||+||+|||.--
T Consensus 344 ~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~------~~spElla~y~D~~~ 396 (410)
T 4ap2_B 344 GLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN------SRSPEYLAENLYFQS 396 (410)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC------CCCHHHHHHHccCcc
Confidence 99999999999999999999999999999999999987 578899999999854
No 5
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=4.7e-43 Score=372.68 Aligned_cols=242 Identities=24% Similarity=0.457 Sum_probs=226.3
Q ss_pred CCccChHhhHHHHHHHHHHHHhcCCCChhhhhhhhhhhhhhcccCCcccHHHHHHHHHhhhhhh----------------
Q psy16234 5 PKQVDFNKTWGSLQETIQGVITLGNVRRATWNDRFSDIYSLCVAYPEPLADRLYQETKLFLDQH---------------- 68 (609)
Q Consensus 5 ~~~~~fe~~W~~l~~~i~~i~~~~~~~~~~~~~~y~~vy~~c~~~~~~~~~~Ly~~~~~~l~~~---------------- 68 (609)
+++++||++|+.|++||.+|+..+++++..||++|++||++|++.+. .|++||+++++++++|
T Consensus 10 ~~~~~~e~~W~~L~~ai~~I~~~~~~~~~s~e~LY~~vy~lc~~~~~-~~~~LY~~l~~~~~~~l~~~~~~~~~~~~~e~ 88 (391)
T 2wzk_A 10 KGSLQFEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDK-GSSKIHQALKEDILEFIKQAQARVLSHQDDTA 88 (391)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CccccHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 35689999999999999999998899999999999999999998654 7999999998777655
Q ss_pred --------------------------------------------------------------------------------
Q psy16234 69 -------------------------------------------------------------------------------- 68 (609)
Q Consensus 69 -------------------------------------------------------------------------------- 68 (609)
T Consensus 89 ~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~~~ll~lI~~eR~ 168 (391)
T 2wzk_A 89 LLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERL 168 (391)
T ss_dssp HHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence
Q ss_pred ----------------------------ccHHhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhh
Q psy16234 69 ----------------------------LYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRF 120 (609)
Q Consensus 69 ----------------------------~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~eYl~~v~~~l~~E~~r~~~y 120 (609)
+|.+.||++||++|.+||+.+|++|++++++++||++|+.+|++|.+||..|
T Consensus 169 Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~y 248 (391)
T 2wzk_A 169 GEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRY 248 (391)
T ss_dssp TCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999
Q ss_pred cC----CCchhHHHHHHHHHHHHHHHHHHHhhhHHHHhcccHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhc
Q psy16234 121 LH----VSSYPKVKAKCEQHMVADHLNFLQGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRDHICKQGLEAISG 196 (609)
Q Consensus 121 L~----~~t~~kl~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~ 196 (609)
|| ++|.++|.++|+++||.+|++.|.++|..||++++.+||++||+|++|+|+|+++|+.+|++||++.|.+++..
T Consensus 249 L~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~~v~~ 328 (391)
T 2wzk_A 249 LETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVA 328 (391)
T ss_dssp SCCTTCCSHHHHHHHHHHHHHTGGGHHHHHTTHHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred cc--CCCchHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCCC
Q psy16234 197 LS--GDNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVINHKF 247 (609)
Q Consensus 197 ~~--~~~~~~~~V~~ll~~~~k~~~li~~~F~~~~~f~~~l~~af~~~~N~~~ 247 (609)
.. ...+|..||+.||++|++|+.++..||++|+.|.+++++||+.|+|.+.
T Consensus 329 ~~~~~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~ 381 (391)
T 2wzk_A 329 AAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381 (391)
T ss_dssp HGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCch
Confidence 42 2357899999999999999999999999999999999999999999764
No 6
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=7.7e-42 Score=358.83 Aligned_cols=234 Identities=23% Similarity=0.443 Sum_probs=215.8
Q ss_pred CccChHhhHHHHHHHHHHHHhcCCCChhhhhhhhhhhhhhcccCCcccHHHHHHHHHhhhhhh-----------------
Q psy16234 6 KQVDFNKTWGSLQETIQGVITLGNVRRATWNDRFSDIYSLCVAYPEPLADRLYQETKLFLDQH----------------- 68 (609)
Q Consensus 6 ~~~~fe~~W~~l~~~i~~i~~~~~~~~~~~~~~y~~vy~~c~~~~~~~~~~Ly~~~~~~l~~~----------------- 68 (609)
...+||++|+.|++||..|++.++. ...|+++|++||++|++. .|++||+++++++.+|
T Consensus 6 ~~~~~~~~W~~L~~ai~~I~~~~~~-~~s~eeLY~~vy~lc~~~---~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~~~~ 81 (354)
T 4a64_A 6 PENYTDETWQKLKEAVEAIQNSTSI-KYNLEELYQAVENLCSYK---ISANLYKQLRQICEDHIKAQIHQFREDSLDSVL 81 (354)
T ss_dssp CSSSTTHHHHHHHHHHHHHHTTCCC-CSCHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHTTGGGGCCSCCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence 3468999999999999999987653 457999999999999985 8999999998777655
Q ss_pred --------------------------------------------------------------------------------
Q psy16234 69 -------------------------------------------------------------------------------- 68 (609)
Q Consensus 69 -------------------------------------------------------------------------------- 68 (609)
T Consensus 82 ~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id 161 (354)
T 4a64_A 82 FLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAID 161 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence
Q ss_pred ---------------ccHHhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHH
Q psy16234 69 ---------------LYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYPKVKAKC 133 (609)
Q Consensus 69 ---------------~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~eYl~~v~~~l~~E~~r~~~yL~~~t~~kl~~~l 133 (609)
+|.+.||++||++|.+||+.+|++|++++++++||++|+.++++|.+||..||+++|.++|.++|
T Consensus 162 ~~lik~~i~ml~~L~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~ 241 (354)
T 4a64_A 162 RSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATV 241 (354)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HhhhHHHHhcccHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHH
Q psy16234 134 EQHMVADHLNFL-QGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRDHICKQGLEAISGLSGDNISTQFVENMLA 212 (609)
Q Consensus 134 ~~~LI~~~~~~l-~~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~V~~ll~ 212 (609)
+++||.+|++.| .+||..||++++.+||++||+|++|+|+|+++|+.+|++||++.|.+++.+.. .|..||+.||+
T Consensus 242 e~~LI~~h~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~---~~~~~V~~LL~ 318 (354)
T 4a64_A 242 EKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPE---KDKTMRQELDD 318 (354)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSCC---SSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcCcc---chHHHHHHHHH
Confidence 999999999976 48999999999999999999999999999999999999999999999997643 35679999999
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCC
Q psy16234 213 VHKKYKAFVKELFSGDQSFMGALDKACSSVINHK 246 (609)
Q Consensus 213 ~~~k~~~li~~~F~~~~~f~~~l~~af~~~~N~~ 246 (609)
+|++|+.++..||++|+.|..++++||+.|+|.+
T Consensus 319 l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~ 352 (354)
T 4a64_A 319 FKDKVDHIIDICFLKNEKFINAMKEAFETFINKR 352 (354)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999976
No 7
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=9.6e-43 Score=367.06 Aligned_cols=237 Identities=21% Similarity=0.416 Sum_probs=170.8
Q ss_pred CccChHhhHHHHHHHHHHHHhcCCCChhhhhhhhhhhhhhcccCCcccHHHHHHHHHhhhhhh-----------------
Q psy16234 6 KQVDFNKTWGSLQETIQGVITLGNVRRATWNDRFSDIYSLCVAYPEPLADRLYQETKLFLDQH----------------- 68 (609)
Q Consensus 6 ~~~~fe~~W~~l~~~i~~i~~~~~~~~~~~~~~y~~vy~~c~~~~~~~~~~Ly~~~~~~l~~~----------------- 68 (609)
...+||++|+.|++||..|++.++. ...|+++|++||++|++. .|++||+++++++.+|
T Consensus 9 ~~~~~~~~W~~L~~ai~~I~~~~~~-~~s~e~LY~~vy~lc~~k---~g~~LY~~l~~~~~~~l~~~v~~~~~~~~~~~~ 84 (364)
T 4eoz_B 9 DEKYVNSIWDLLKNAIQEIQRKNNS-GLSFEELYRNAYTMVLHK---HGEKLYTGLREVVTEHLINKVREDVLNSLNNNF 84 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCGG-GCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTHHHHHHTTTTSSH
T ss_pred ChhhHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhhh---CHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3468999999999999999987543 567999999999999975 7999999998887765
Q ss_pred --------------------------------------------------------------------------------
Q psy16234 69 -------------------------------------------------------------------------------- 68 (609)
Q Consensus 69 -------------------------------------------------------------------------------- 68 (609)
T Consensus 85 L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id~~ 164 (364)
T 4eoz_B 85 LQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRG 164 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence
Q ss_pred ------------------ccHHhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHH
Q psy16234 69 ------------------LYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYPKVK 130 (609)
Q Consensus 69 ------------------~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~eYl~~v~~~l~~E~~r~~~yL~~~t~~kl~ 130 (609)
+|.+.||++||++|.+||+.+|++|++++++++||++|+.++++|.+||..||+++|.++|.
T Consensus 165 lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~ 244 (364)
T 4eoz_B 165 AIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIV 244 (364)
T ss_dssp HHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH----hhhHHHHhcccHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhcccCCCchHHH
Q psy16234 131 AKCEQHMVADHLNFLQ----GECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRDHICKQGLEAISGLSGDNISTQF 206 (609)
Q Consensus 131 ~~l~~~LI~~~~~~l~----~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~ 206 (609)
++|+++||.+|++.|. +||..||++++.+||++||+|++|+|+|+++|+.+|++||++.|.+++........|..|
T Consensus 245 ~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~~~~ 324 (364)
T 4eoz_B 245 KVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEGKNPVDY 324 (364)
T ss_dssp HHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCccccCChHHH
Confidence 9999999999999996 599999999999999999999999999999999999999999999999887666678999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCC
Q psy16234 207 VENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVINHK 246 (609)
Q Consensus 207 V~~ll~~~~k~~~li~~~F~~~~~f~~~l~~af~~~~N~~ 246 (609)
|+.||++|++|+.++..||++|+.|..++++||+.|+|.+
T Consensus 325 V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 325 RQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999964
No 8
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=3.2e-28 Score=202.78 Aligned_cols=93 Identities=45% Similarity=0.620 Sum_probs=87.2
Q ss_pred EEeccccccCChhHHhhhhhhHHHHhhhhhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccc
Q psy16234 516 LKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYV 595 (609)
Q Consensus 516 i~i~~~~~~~~~~e~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl 595 (609)
++|+.++.+++++|.+.+++.+++||++.||||||||||+||+|+|++|+.+|+++++ |.|++.+||+|||.|||||||
T Consensus 3 ~ki~~i~~ke~~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~-F~p~~~~IKk~IE~LIereYl 81 (101)
T 2do7_A 3 SGSSGIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK-FPVKPADLKKRIESLIDRDYM 81 (101)
T ss_dssp CSSCSCCCCCCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS-SCCCHHHHHHHHHHHHHTTSE
T ss_pred eeecccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhhhHH
Confidence 5566666677777888889999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cccCCCCCceeecC
Q psy16234 596 ERTANSTDEYSYVA 609 (609)
Q Consensus 596 ~r~~~~~~~y~Yia 609 (609)
+|+++|++.|+|+|
T Consensus 82 eR~~~d~~~y~YlA 95 (101)
T 2do7_A 82 ERDKENPNQYNYIA 95 (101)
T ss_dssp EECSSCTTEEEECC
T ss_pred hcCCCCCCeEEEec
Confidence 99999999999998
No 9
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.93 E-value=5.2e-27 Score=190.71 Aligned_cols=80 Identities=39% Similarity=0.769 Sum_probs=77.8
Q ss_pred HHhhhhhhHHHHhhhhhhhhhhhhhccccCCChHHHHHHHHHhhcC-CCCChHHHHHHHHHhhhhccccccCCCCCceee
Q psy16234 529 EIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSY 607 (609)
Q Consensus 529 e~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Y 607 (609)
|.++|++.+++||+..||||||||||+||+|+|++|+.+|++++++ |+|++.+||+|||.|||||||+|+++| ++|+|
T Consensus 8 e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~Y 86 (88)
T 3o2p_E 8 EDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYAY 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEEE
T ss_pred hHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEEe
Confidence 6778899999999999999999999999999999999999999998 999999999999999999999999999 99999
Q ss_pred cC
Q psy16234 608 VA 609 (609)
Q Consensus 608 ia 609 (609)
+|
T Consensus 87 lA 88 (88)
T 3o2p_E 87 LA 88 (88)
T ss_dssp CC
T ss_pred eC
Confidence 98
No 10
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.93 E-value=9e-28 Score=197.43 Aligned_cols=87 Identities=51% Similarity=0.721 Sum_probs=81.7
Q ss_pred ccCChhHHhhhhhhHHHHhhhhhhhhhhhhhccccCCChHHHHHHHHHhhcC-CCCChHHHHHHHHHhhhhccccccCCC
Q psy16234 523 QKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANS 601 (609)
Q Consensus 523 ~~~~~~e~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r~~~~ 601 (609)
.+++++|.+.+++.+++||++.||||||||||+||+|+|++|+.+|++++++ |.|++.+||+|||.|||||||+|+++|
T Consensus 5 ~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d 84 (92)
T 1iuy_A 5 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 84 (92)
T ss_dssp CCCCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSC
T ss_pred ccccHHHHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCC
Confidence 4566667778889999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred CCceeecC
Q psy16234 602 TDEYSYVA 609 (609)
Q Consensus 602 ~~~y~Yia 609 (609)
++.|+|+|
T Consensus 85 ~~~y~Y~A 92 (92)
T 1iuy_A 85 RKVYTYVA 92 (92)
T ss_dssp SSEEEEC-
T ss_pred CCeeEecC
Confidence 99999998
No 11
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.93 E-value=3.8e-27 Score=187.03 Aligned_cols=75 Identities=56% Similarity=0.919 Sum_probs=72.5
Q ss_pred hhHHHHhhhhhhhhhhhhhccccCCChHHHHHHHHHhhcC-CCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q psy16234 535 SSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 609 (609)
Q Consensus 535 ~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yia 609 (609)
+.+++||+..||||||||||+||+|+|++|+.+|++++++ |+|++.+||+|||+|||||||+|+++|+++|+|+|
T Consensus 2 k~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 2 SNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred cchhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 3578999999999999999999999999999999999998 99999999999999999999999999999999998
No 12
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=94.21 E-value=0.099 Score=41.26 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=43.9
Q ss_pred HHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecC
Q psy16234 450 AILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLG 508 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~ 508 (609)
.||..+.+...+|..||++.+|++...+.+.|..|.+.|++...+..-..+..|.++.+
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 45666666678999999999999999999999999999999743211122345565543
No 13
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=92.83 E-value=0.11 Score=42.97 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=45.2
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+...+.+|..+|++.+|++...+.++|..|.+.|++...
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 57788999988877778999999999999999999999999999999754
No 14
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=92.45 E-value=0.18 Score=41.00 Aligned_cols=49 Identities=18% Similarity=0.378 Sum_probs=44.0
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+..|..||..+.+++.+|..+|++.+|++...+.++|..|.+.|++...
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4678888888888778999999999999999999999999999999754
No 15
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=92.22 E-value=0.14 Score=39.11 Aligned_cols=56 Identities=11% Similarity=0.220 Sum_probs=49.0
Q ss_pred hhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q psy16234 547 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 609 (609)
Q Consensus 547 A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yia 609 (609)
...|...|.+|.+..++|-.+ |..+.+++-.+|+.|.+.|-|.-.-+|+..|+||+
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~-------F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQ-------MGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHH-------HCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHHcCeeeHHHHHHH-------hCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 344677899999999887754 88999999999999999999999888999999985
No 16
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=92.06 E-value=0.23 Score=43.43 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=46.0
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|+.|..||.....++ +|..+|++.+|++...+.++|..|.+.|++...
T Consensus 35 ~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~ 84 (146)
T 3tgn_A 35 ALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETS 84 (146)
T ss_dssp CCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEec
Confidence 46889999999998888 999999999999999999999999999999765
No 17
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=91.95 E-value=0.15 Score=43.79 Aligned_cols=52 Identities=13% Similarity=0.292 Sum_probs=45.5
Q ss_pred EEecHHHHHHHHhhcCCCC--CCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 442 VTMQTFQMAILLLFEKNDA--MTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 442 l~~s~~Q~~iLllFn~~~~--lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+.++..|..||..+.+.+. +|..+|++.+|++...+.++|..|.+.|++.+.
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 3467889999988776655 999999999999999999999999999999764
No 18
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=91.83 E-value=0.19 Score=39.64 Aligned_cols=51 Identities=12% Similarity=0.244 Sum_probs=45.1
Q ss_pred EecHHHHHHHHhhcCC--CCCCHHHHHHHh-----CCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKN--DAMTCGDIQTVL-----SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~--~~lt~~ei~~~t-----~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.++.-+..||..+.+. ..+|.+||++.+ +++...+.++|..|.+.|++...
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 4567788899888775 589999999999 99999999999999999999764
No 19
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=91.78 E-value=0.34 Score=39.41 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=45.8
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLG 508 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~ 508 (609)
+..+..||.++ ...+|+.+|++.+|++...+.++|..|.+.|++.... +.|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC------CEEEECCC
Confidence 34566777777 3569999999999999999999999999999997652 37777764
No 20
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.56 E-value=0.22 Score=39.03 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=42.7
Q ss_pred HHHHHHhhcCCC---CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEe
Q psy16234 448 QMAILLLFEKND---AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLN 506 (609)
Q Consensus 448 Q~~iLllFn~~~---~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN 506 (609)
+..||.++.+.. .+|..||++.+|++...+.++|..|.+.|++...+. ....+.++
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~---~~~~W~i~ 74 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG---TPPLWKIA 74 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECS---SSCEEEEC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC---CCCceEec
Confidence 355665555444 899999999999999999999999999999876531 12455554
No 21
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=91.54 E-value=0.074 Score=58.57 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=51.1
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh-----cCccccCCCCCCCCCEEEEecCCCCCcceEEec
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE-----CKLLTSNKEELTEDTEIRLNLGYNNKRTKLKIS 519 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~-----~~iL~~~~~~~~~~~~f~lN~~F~~~~~ki~i~ 519 (609)
+..+..||....++..+|..+|++.+|++...+++.|..|++ .|++... ++.|.++..........
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~------g~~y~L~~~~~~~~~~~--- 499 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH------DGVWLLGNACREILRKV--- 499 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE------TTEEEECHHHHHHHTSC---
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe------CCEEEECHHHHHHhccc---
Confidence 456778888778888999999999999999999999999998 6788765 36788887642111100
Q ss_pred cccccCChhHHhhhhhhHHHHhhhhhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 520 GAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 520 ~~~~~~~~~e~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
. ... ..-.....+. ....+..|+..++.++.++-.++.+. +..+.....+.|..|+++|-|++.+
T Consensus 500 -~-~~~---~~~~~~~~~~---~~~~~~~I~~~l~~~g~it~~di~~l-------~~ls~~qa~~~L~~Lv~~G~l~~~G 564 (583)
T 3lmm_A 500 -E-PSP---FSPVRYLSTD---QAELTNAAMLWLSEVGDLATSDLMAM-------CGVSRGTAKACVDGLVDEERVVAVG 564 (583)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -c-ccc---ccccccccCC---hhHHHHHHHHHHHHcCCcCHHHHHHH-------HCCCHHHHHHHHHHHHHCCcEEEeC
Confidence 0 000 0000000111 23456679999999999888876632 3356778899999999999999876
Q ss_pred CC
Q psy16234 600 NS 601 (609)
Q Consensus 600 ~~ 601 (609)
..
T Consensus 565 ~g 566 (583)
T 3lmm_A 565 GG 566 (583)
T ss_dssp --
T ss_pred CC
Confidence 54
No 22
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=91.52 E-value=0.16 Score=38.61 Aligned_cols=46 Identities=9% Similarity=0.166 Sum_probs=38.6
Q ss_pred HHHHHHHhhcCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 447 FQMAILLLFEKN-DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 447 ~Q~~iLllFn~~-~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
..-.||.++.+. ..+|..+|++.+|++...+.++|..|.+.|++..
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 344577777654 5799999999999999999999999999999754
No 23
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=91.39 E-value=0.45 Score=38.70 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=41.7
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+..+..||..+.+ +.+|+.+|++.+|++...+.++|..|.+.|++...
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3456677777776 78999999999999999999999999999999754
No 24
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=91.34 E-value=0.19 Score=39.44 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=39.4
Q ss_pred HHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 451 ILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 451 iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
|+...+++..+|++||++.+++++..+++-|..|.+.|+|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 6667788899999999999999999999999999999988765
No 25
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=91.19 E-value=0.21 Score=43.58 Aligned_cols=50 Identities=8% Similarity=0.168 Sum_probs=46.7
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||......+.+|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 34 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 34 LTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp CCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEec
Confidence 56789999999988899999999999999999999999999999999765
No 26
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=91.16 E-value=0.32 Score=39.41 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=45.7
Q ss_pred EEecHHHHHHHHhhcC--CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 442 VTMQTFQMAILLLFEK--NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 442 l~~s~~Q~~iLllFn~--~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
..++..|..||....+ ++.++..+|++.++++...+.++|..|.+.|++...
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3567789999988776 568999999999999999999999999999998743
No 27
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=91.05 E-value=0.19 Score=43.95 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=43.6
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|..|..||......+.+|..+|++.+|++...+.+.+..|.+.|++...
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeec
Confidence 367889999999988889999999999999999999999999999999875
No 28
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=91.03 E-value=0.23 Score=43.49 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=46.0
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||......+.+|..+|++.+|++...+.+.+..|.+.|++...
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 47789999998887778999999999999999999999999999999865
No 29
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=90.85 E-value=0.37 Score=42.63 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=46.2
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 47789999999988889999999999999999999999999999999765
No 30
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=90.83 E-value=0.29 Score=44.72 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=46.1
Q ss_pred cccceEEEEEEEeCccEEEEecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 424 HNISQVELKLSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 424 ~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
|+.+++.+..+- .-...++..+..||..+.+...+|+.+|++.+|++...+.+.|..|.+.|++..
T Consensus 8 ~~~~~~~~~~~~---~m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 8 HHHSSGLVPRGS---HMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp -------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred cccccccccccc---ccccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 456677765532 122357888999998888888999999999999999999999999999999865
No 31
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=90.79 E-value=0.38 Score=37.66 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=38.3
Q ss_pred HHHHhhcCC------CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 450 AILLLFEKN------DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 450 ~iLllFn~~------~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
.||....+. .+.|+.||++.+|++...+.+.|..|.+.|+|...+
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecC
Confidence 355555443 789999999999999999999999999999998765
No 32
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=90.78 E-value=0.21 Score=40.05 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=39.4
Q ss_pred HHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 451 ILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 451 iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
|+...++.+.+|++||++.+++++..+++-|..|.+.|+|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 6677788899999999999999999999999999999988765
No 33
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=90.69 E-value=0.31 Score=42.73 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=46.4
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.++..|..||......+.+|..+|++.+|++...+.+.+..|.+.|++...
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 467889999999888889999999999999999999999999999999765
No 34
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=90.42 E-value=0.26 Score=40.26 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=45.3
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHH----HHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDI----QTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei----~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+.+.+.+|..+| ++.++++...+.+.|..|.+.|++.+.
T Consensus 6 lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~ 59 (99)
T 1tbx_A 6 FFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKER 59 (99)
T ss_dssp SBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 56789999988888889999999 899999999999999999999999764
No 35
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=90.41 E-value=0.29 Score=40.31 Aligned_cols=50 Identities=18% Similarity=0.391 Sum_probs=41.9
Q ss_pred ecHHHHHHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..+|+.+-. .+.+|..+|++.+|++...+.++|..|.+.|++...
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 35567766655543 678999999999999999999999999999999765
No 36
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=90.40 E-value=0.32 Score=41.94 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=45.8
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+..++.+|..+|++.+|++...+.+.+..|.+.|++...
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 46789999988888889999999999999999999999999999999764
No 37
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=90.24 E-value=0.25 Score=43.54 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=45.8
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||.....++.+|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 56789999998888889999999999999999999999999999999875
No 38
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=90.11 E-value=0.34 Score=39.44 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=46.1
Q ss_pred EEecHHHHHHHHhhcCCCCCCHHHHHH-HhCCCHHHHHHHHHHHHhcCccc
Q psy16234 442 VTMQTFQMAILLLFEKNDAMTCGDIQT-VLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 442 l~~s~~Q~~iLllFn~~~~lt~~ei~~-~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
..++..|..||......+..|..+|++ ..+++...+-+++.+|.+.|++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 346788999999998888999999999 99999999999999999999997
No 39
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=90.04 E-value=0.21 Score=43.60 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=45.9
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||......+.+|..+|++.+|++...+.+.+..|.+.|++.+.
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeecc
Confidence 57789999988887789999999999999999999999999999999765
No 40
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=89.89 E-value=0.39 Score=42.79 Aligned_cols=50 Identities=10% Similarity=0.242 Sum_probs=45.5
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||......+.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeee
Confidence 57789999988887889999999999999999999999999999999765
No 41
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=89.70 E-value=0.27 Score=42.31 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=45.7
Q ss_pred EecHHHHHHHHhhcCC--CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 443 TMQTFQMAILLLFEKN--DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~--~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
.+|..|..||...... +.+|..+|++.++++...+.+.|..|.+.|++.+.+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 87 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKR 87 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBC
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 3567888888877666 789999999999999999999999999999998753
No 42
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=89.59 E-value=0.49 Score=41.19 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=44.6
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||..+. .+.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 4678999998888 788999999999999999999999999999999764
No 43
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=89.48 E-value=0.36 Score=38.14 Aligned_cols=44 Identities=9% Similarity=0.219 Sum_probs=36.5
Q ss_pred HHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 450 AILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
.||.++.+.. .|+.+|++.+|++...+.++|..|.+.|++...+
T Consensus 21 ~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~ 64 (82)
T 1oyi_A 21 EAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSD 64 (82)
T ss_dssp HHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECS
T ss_pred HHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC
Confidence 3444444444 9999999999999999999999999999997653
No 44
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=89.44 E-value=0.38 Score=38.03 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCC---CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 448 QMAILLLFEKND---AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 448 Q~~iLllFn~~~---~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
+..||.++.+.. .+|..+|++.+|++...+.++|..|.+.|+|...++ ....|.+..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~---~~~~W~i~~ 71 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG---TPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESS---SSCEEEEC-
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC---CCCeeEEeC
Confidence 455666665545 899999999999999999999999999999876531 124565553
No 45
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=89.42 E-value=0.35 Score=41.80 Aligned_cols=50 Identities=12% Similarity=0.164 Sum_probs=45.3
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 36 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 36 LTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp CCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 56789999988877779999999999999999999999999999999754
No 46
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=89.41 E-value=0.34 Score=42.77 Aligned_cols=49 Identities=12% Similarity=0.278 Sum_probs=45.6
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
+|..|..||..+...+.+|..+|++.++++...+.+.+..|.+.|++..
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 5788999998888888899999999999999999999999999999977
No 47
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=89.28 E-value=0.34 Score=42.20 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=44.7
Q ss_pred ecHHHHHHHHhh-cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLF-EKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllF-n~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+ ...+.+|..+|++.+|++...+.+.+..|.+.|++...
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeec
Confidence 456788888888 67788999999999999999999999999999999765
No 48
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=89.11 E-value=0.31 Score=39.54 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=42.3
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
++.+..||..+...+.+|..+|++.+|++...+.++|..|.+.|++..
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~ 62 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKT 62 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 567788887776566899999999999999999999999999999864
No 49
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=89.00 E-value=0.39 Score=41.53 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=44.6
Q ss_pred ecHHHHHHHHhhcCCC--CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKND--AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~--~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||......+ .+|..+|++.+|++...+.+.+..|.+.|++...
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 5678889998877654 8999999999999999999999999999999765
No 50
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=88.91 E-value=0.39 Score=41.78 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=45.6
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|+.||..+...+.+|..+|++.+|++...+.+.+..|.+.|++...
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 57789999988887778999999999999999999999999999999764
No 51
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=88.86 E-value=0.4 Score=41.98 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=44.9
Q ss_pred EEEecHHHHHHHHhhcC-----CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 441 FVTMQTFQMAILLLFEK-----NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 441 ~l~~s~~Q~~iLllFn~-----~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+-+|.-++.+|+++-. ....|.++|++.+|++..++.+.|+.|++.|+|...
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45677888888877554 456899999999999999999999999999999763
No 52
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=88.81 E-value=0.51 Score=40.81 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=44.6
Q ss_pred ecHHHHHHHHhhcCCC--CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKND--AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~--~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||......+ .+|..+|++.+|++...+.+.+..|.+.|++...
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 83 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK 83 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEee
Confidence 5678888888877666 8999999999999999999999999999999764
No 53
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=88.80 E-value=0.71 Score=40.78 Aligned_cols=49 Identities=12% Similarity=0.260 Sum_probs=43.6
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+..+..||..+.++..+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 3457778888888889999999999999999999999999999999753
No 54
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=88.60 E-value=0.41 Score=41.32 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=45.3
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|+.||......+.+|..+|++.+|++...+.+.+..|.+.|++...
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 46789999988887778999999999999999999999999999999764
No 55
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=88.60 E-value=0.42 Score=42.00 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=45.9
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 57789999988888789999999999999999999999999999999765
No 56
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=88.60 E-value=0.43 Score=42.09 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=45.7
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||......+.+|..+|++.++++...+.+.|..|.+.|++...
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 46789999988887788999999999999999999999999999999764
No 57
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=88.58 E-value=0.42 Score=41.40 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=46.0
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.++..|..||.....++.+|..+|++.+|++...+.+.+..|.+.|++...
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~ 78 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRK 78 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 357789999988887778999999999999999999999999999998754
No 58
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=88.57 E-value=0.34 Score=43.36 Aligned_cols=50 Identities=6% Similarity=0.120 Sum_probs=46.0
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||......+.+|..+|++.+|++...+.+.+..|.+.|++.+.
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 93 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKA 93 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEec
Confidence 56789999988888889999999999999999999999999999999765
No 59
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=88.57 E-value=0.43 Score=43.03 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=45.0
Q ss_pred ecHHHHHHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..... .+.+|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~ 101 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQ 101 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEee
Confidence 46789999988876 677999999999999999999999999999999875
No 60
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=88.55 E-value=0.33 Score=43.43 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=46.0
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||......+.+|..+|++.+|++...+.+.+..|.+.|++.+.
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 56789999988887789999999999999999999999999999999875
No 61
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=88.49 E-value=0.44 Score=42.52 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=45.8
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 57789999988888888999999999999999999999999999999764
No 62
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=88.42 E-value=0.49 Score=37.14 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=44.9
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhC----CCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLS----LSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~----i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|..|..||..+-+.+.+|..||++.++ ++...+.+.|..|.+.|++...
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 36788999998887778899999999996 7899999999999999999765
No 63
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=88.19 E-value=0.46 Score=41.52 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=45.7
Q ss_pred ecHHHHHHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..... .+.+|..+|++.+|++...+.+.+..|.+.|++...
T Consensus 33 l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 57789999988887 788999999999999999999999999999999765
No 64
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=88.09 E-value=0.46 Score=41.66 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=45.4
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 56789999988887788999999999999999999999999999999754
No 65
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=88.07 E-value=0.4 Score=41.53 Aligned_cols=50 Identities=8% Similarity=0.122 Sum_probs=45.5
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|.+.|++...
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 57789999988887778999999999999999999999999999999764
No 66
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=88.02 E-value=0.46 Score=42.06 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=45.4
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+.+.+.+|..+|++.++++...+.+.+..|.+.|++...
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 57789999988877778999999999999999999999999999999764
No 67
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=87.95 E-value=1.3 Score=39.86 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=43.2
Q ss_pred HHHHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecC
Q psy16234 448 QMAILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLG 508 (609)
Q Consensus 448 Q~~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~ 508 (609)
.+.+.+.-+. ...+|.++|++.+++|...+.+.|..|.++|++.... ..++.|.+..+
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~r---G~~GGy~Lar~ 89 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIR---GAHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC---STTCEEEECSC
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEec---CCCCceEecCC
Confidence 3344444443 3579999999999999999999999999999987542 12456777653
No 68
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=87.89 E-value=0.39 Score=43.36 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=46.1
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.++..|..||..+...+.+|..+|++.+|++...+.+.+..|.+.|++.+.
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 357789999988887778999999999999999999999999999999764
No 69
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=87.78 E-value=0.63 Score=38.00 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=43.8
Q ss_pred ecHHHHHHHHhhcCC------CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKN------DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~------~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+++.|..+|..+.+. ..+++.+|++.++++...+.++|..|.+.|++...
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~ 69 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVS 69 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEee
Confidence 678899998866543 67999999999999999999999999999998653
No 70
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=87.70 E-value=0.61 Score=40.68 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=40.4
Q ss_pred ecHHHHHHHHhhc-CCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFE-KNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn-~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..+|..+. ..+.+|..+|++.+|++...+.++|..|.+.|++...
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3456666654432 3467999999999999999999999999999999764
No 71
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=87.60 E-value=1.1 Score=36.57 Aligned_cols=60 Identities=10% Similarity=0.320 Sum_probs=44.5
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
++....||....+ +..|+.+|++.+|++...+.++|..|.+.|++..... .....|+++.
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~--g~~~~y~l~~ 81 (102)
T 3pqk_A 22 HPVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRN--IKQIFYRLTE 81 (102)
T ss_dssp SHHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECS--SSCCEEEECS
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe--CCEEEEEECc
Confidence 3445566666655 5699999999999999999999999999999975420 1123455554
No 72
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=87.58 E-value=0.61 Score=39.82 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=41.6
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++.+..||..+.+.+.+|+.+|++.+|++...+.++|..|...|++...
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3456667777765577999999999999999999999999999999754
No 73
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=87.54 E-value=0.32 Score=42.78 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=39.0
Q ss_pred ecHHHHHHHHhhcCC--CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKN--DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~--~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||...... +.+|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEee
Confidence 567888898877765 78999999999999999999999999999999875
No 74
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=87.54 E-value=1.3 Score=38.95 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=41.2
Q ss_pred HHHHhhcCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 450 AILLLFEKN-DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 450 ~iLllFn~~-~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
.+.+.-+.. ..+|.++|++.+|+|...+.+.|..|.++|++.... ..++.|.+..
T Consensus 17 L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~r---G~~GGy~Lar 72 (143)
T 3t8r_A 17 MISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVR---GAKGGYQLRV 72 (143)
T ss_dssp HHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECS---SSSSEEEESS
T ss_pred HHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecC---CCCCCeeecC
Confidence 333443333 469999999999999999999999999999986442 1245677754
No 75
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=87.49 E-value=0.71 Score=38.24 Aligned_cols=48 Identities=21% Similarity=0.345 Sum_probs=40.1
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++.+..||..+. ...+|+.+|++.+|++...+.++|..|.+.|++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 345666776665 456899999999999999999999999999999654
No 76
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=87.46 E-value=0.69 Score=40.92 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=44.2
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
++..+..||..+.+...+|+.+|++.+|++...+.+.|..|.+.|++..
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5667888888888778899999999999999999999999999999964
No 77
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=87.46 E-value=0.59 Score=38.99 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=41.0
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++.+..||..+ ..+.+|..+|++.+|++...+.++|..|.+.|++...
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEE
Confidence 45667777777 4466999999999999999999999999999999754
No 78
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=87.36 E-value=0.37 Score=42.46 Aligned_cols=49 Identities=18% Similarity=0.351 Sum_probs=44.9
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
.+|..|..||... ..+.+|..+|++.+|++...+.+.+..|.+.|++..
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3578899999888 778999999999999999999999999999999976
No 79
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=87.23 E-value=0.3 Score=42.12 Aligned_cols=50 Identities=6% Similarity=0.171 Sum_probs=45.7
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||......+.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 57789999988888888999999999999999999999999999999764
No 80
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=87.15 E-value=0.58 Score=40.75 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=45.1
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|+.|..||......+. |..+|++.+|++...+.+.+..|.+.|++...
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~ 83 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRI 83 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 357789999988888777 99999999999999999999999999999764
No 81
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=87.15 E-value=0.61 Score=40.99 Aligned_cols=50 Identities=16% Similarity=0.243 Sum_probs=43.2
Q ss_pred ecHHHHHHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||..... .+.+|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 46788889987754 457899999999999999999999999999999765
No 82
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=87.06 E-value=0.42 Score=41.57 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=45.0
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|+.||......+.+|..+|++.++++...+.+.+..|.+.|++...
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 46678888888877788999999999999999999999999999999764
No 83
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=86.90 E-value=0.81 Score=39.49 Aligned_cols=53 Identities=9% Similarity=0.152 Sum_probs=42.5
Q ss_pred EEecHHHHHHHHhhc---C--CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 442 VTMQTFQMAILLLFE---K--NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 442 l~~s~~Q~~iLllFn---~--~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+-++.-|+.||+.+- + ....|.++|++.+|++...+.+.|..|.+.|+|....
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 345667777765543 2 2348999999999999999999999999999998753
No 84
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=86.89 E-value=0.43 Score=42.09 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=45.6
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 35 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 35 VTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 57789999988887778999999999999999999999999999999764
No 85
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=86.82 E-value=0.67 Score=45.31 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=48.1
Q ss_pred HHHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecCC
Q psy16234 449 MAILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLGY 509 (609)
Q Consensus 449 ~~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~F 509 (609)
..||.+|.+ ...+|+.||++.+|++...+.+.|..|...|+|.+++ .+..|.+...+
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~----~~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVE----GARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECS----SSSEEEECTTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcC----CCCcEEcCHHH
Confidence 357888886 4689999999999999999999999999999998874 23678887654
No 86
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=86.81 E-value=0.37 Score=42.91 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=44.6
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||......+.+|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 35578888888877788999999999999999999999999999999765
No 87
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=86.67 E-value=0.35 Score=42.06 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=45.7
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||......+.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 84 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 57789999988887788999999999999999999999999999999764
No 88
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=86.63 E-value=1.5 Score=33.83 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=38.5
Q ss_pred HHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 451 ILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 451 iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
++..+.+++..|..+|+..+|++...+.++|-+|.+.|.+...+
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCC
Confidence 35567777889999999999999999999999999999886654
No 89
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=86.41 E-value=0.44 Score=41.65 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=45.7
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+...+.+|..+|++.++++...+.+.+..|.+.|++...
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~ 87 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRK 87 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEec
Confidence 57789999988887778999999999999999999999999999999765
No 90
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=86.30 E-value=0.9 Score=39.90 Aligned_cols=49 Identities=10% Similarity=0.295 Sum_probs=43.4
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
++..+-.||..+.++..+|..+|++.+|++...+.+.|..|.+.|++..
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 3556777888888778899999999999999999999999999999864
No 91
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=86.20 E-value=0.85 Score=41.16 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=43.0
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
.+.+.+.-+....+|.++|++.+++|...+.+.|..|.+.|++.... ..++-|.+..
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~r---G~~GGy~Lar 72 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV---GKNGGYQLDL 72 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEEC---STTCEEECCS
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec---CCCCCeEecC
Confidence 44444555555679999999999999999999999999999986432 1244576654
No 92
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=86.14 E-value=0.72 Score=40.19 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=42.8
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+..+..||..+..+..+|+.+|++.+|++...+.+.|..|.+.|++...
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 3456778888877778999999999999999999999999999998654
No 93
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=86.05 E-value=1.7 Score=37.30 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecC
Q psy16234 458 NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLG 508 (609)
Q Consensus 458 ~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~ 508 (609)
...+|..+|++.+|+|...+.+.|..|.+.|++.... ..++.|.+..+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~---g~~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIR---GAYGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC-------CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecC---CCCCceEeCCC
Confidence 4579999999999999999999999999999987542 12355776654
No 94
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=86.04 E-value=1.3 Score=39.33 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=42.0
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecC
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLG 508 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~ 508 (609)
.+.+.+.-+....+|.++|++.+++|...+.+.|..|.+.|++....+ ++.|.+..+
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG----~GGy~L~~~ 74 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG----PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-------CCEEESSC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC----CCceEeCCC
Confidence 333444443445799999999999999999999999999999875421 355776554
No 95
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=86.04 E-value=0.65 Score=44.99 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=44.9
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+.+.+.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 150 L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 56788899988777778999999999999999999999999999999764
No 96
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=85.81 E-value=0.63 Score=45.95 Aligned_cols=54 Identities=22% Similarity=0.331 Sum_probs=44.2
Q ss_pred HHHHhhcCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecC
Q psy16234 450 AILLLFEKN-DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLG 508 (609)
Q Consensus 450 ~iLllFn~~-~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~ 508 (609)
.||.+|.+. ..+|+.||++.+|+|...+.+.|..|...|+|.+++ +..|.+-..
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~-----~~~Y~LG~~ 88 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSA-----DGTLRIGPH 88 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECT-----TSEEEECTH
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC-----CCcEEehHH
Confidence 588888865 469999999999999999999999999999998874 457877554
No 97
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=85.37 E-value=1 Score=39.80 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=44.4
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..+..||.++.++...|+.+|++.+|++...+.+.|..|.+.|++...
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 45677788888888788999999999999999999999999999998653
No 98
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=85.33 E-value=1.6 Score=38.37 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=40.9
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecC
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLG 508 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~ 508 (609)
.+.+.+.-+.. . |.++|++.+++|...+.+.|..|.++||+.... . ++-|.+..+
T Consensus 13 ~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~r---G-~GGy~Lar~ 67 (145)
T 1xd7_A 13 HILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLKKADILTSRA---G-VPGASLKKD 67 (145)
T ss_dssp HHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCS---S-SSSCEESSC
T ss_pred HHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeec---C-CCCceecCC
Confidence 33444444443 5 999999999999999999999999999997542 1 345666553
No 99
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=85.31 E-value=0.73 Score=42.51 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=45.0
Q ss_pred ecHHHHHHHHhhcC--CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEK--NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~--~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||..... .+.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 67889999987765 468999999999999999999999999999999765
No 100
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=85.29 E-value=0.74 Score=40.57 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=42.6
Q ss_pred ecHHHHHHHHhh--cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLF--EKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllF--n~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||... ++.+.+|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~ 84 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKR 84 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEe
Confidence 456777777555 45567999999999999999999999999999999765
No 101
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=85.27 E-value=0.6 Score=36.66 Aligned_cols=48 Identities=6% Similarity=0.027 Sum_probs=41.7
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHhCCCHH-HHHHHHHHHHhcCccccC
Q psy16234 446 TFQMAILLLFEKNDAMTCGDIQTVLSLSQD-QIGRHIASLVECKLLTSN 493 (609)
Q Consensus 446 ~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~-~l~~~L~~L~~~~iL~~~ 493 (609)
..+--||.+.......|..+|++.+|++.. .+.++|..|.+.|++.+.
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec
Confidence 456667777777788999999999999998 999999999999998754
No 102
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=84.77 E-value=1 Score=39.82 Aligned_cols=49 Identities=12% Similarity=0.269 Sum_probs=44.1
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
++..+..||.++.++..+|+.+|++.+|++...+.+.|..|.+.|++..
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 4567778888888888999999999999999999999999999999864
No 103
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=84.75 E-value=1 Score=43.38 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=45.7
Q ss_pred HHHHhhcCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecC
Q psy16234 450 AILLLFEKND-AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLG 508 (609)
Q Consensus 450 ~iLllFn~~~-~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~ 508 (609)
.||.+|.+.+ .+|+.||++.+|++...+.+.|..|.+.|++..++ .+..|.+...
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~----~~~~Y~lg~~ 65 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALG----PAGGFRLGPA 65 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECG----GGCEEEECSH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC----CCCeEEECHH
Confidence 5777787654 79999999999999999999999999999998763 1357877654
No 104
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=84.53 E-value=0.61 Score=43.90 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=45.7
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||......+.+|..+|++.++++...+.+.|..|.+.|++.+.
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~ 95 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFS 95 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 47789999988877788999999999999999999999999999999765
No 105
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=84.26 E-value=0.47 Score=42.15 Aligned_cols=50 Identities=8% Similarity=0.281 Sum_probs=45.4
Q ss_pred ecHHHHHHHHhh-cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLF-EKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllF-n~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||... ...+.+|..+|++.+|++...+.+.+..|.+.|++...
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 577899999888 56778999999999999999999999999999999765
No 106
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=84.23 E-value=1.1 Score=39.49 Aligned_cols=49 Identities=16% Similarity=0.424 Sum_probs=44.2
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
++..+-.||.++.++..+|..+|++.+|++...+.+.+..|.+.|++..
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4567778888888888999999999999999999999999999999864
No 107
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=84.10 E-value=0.95 Score=36.53 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=38.4
Q ss_pred HHHHHHhhcCCC-CCCHHHHHHHhCCCHHH-HHHHHHHHHhcCccc
Q psy16234 448 QMAILLLFEKND-AMTCGDIQTVLSLSQDQ-IGRHIASLVECKLLT 491 (609)
Q Consensus 448 Q~~iLllFn~~~-~lt~~ei~~~t~i~~~~-l~~~L~~L~~~~iL~ 491 (609)
+..+|..+...+ .+|..+|++.+|++... +.+.|..|.+.|++.
T Consensus 17 ~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 17 ILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 445666666665 89999999999999999 999999999999986
No 108
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=83.99 E-value=0.66 Score=38.63 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+..||..+.+ +.+|+.+|++.+|++...+.++|..|.+.|++...
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3456655554 67899999999999999999999999999999754
No 109
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=83.64 E-value=1.3 Score=40.30 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=45.2
Q ss_pred EEecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 442 VTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 442 l~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
..++..+..||....++..+|+.+|++.+|++...+.+.|..|.+.|++..
T Consensus 13 ~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 346678888998888888899999999999999999999999999999864
No 110
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=83.62 E-value=1.4 Score=39.01 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=43.9
Q ss_pred ecHHHHHHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|+.||..... .+..+..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~ 79 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRH 79 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEee
Confidence 56789999987764 566888999999999999999999999999999765
No 111
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=83.58 E-value=1.4 Score=39.48 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=43.9
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
++..+..||..+.++..+|+.+|++.+|++...+.+.|..|.+.|++..
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEee
Confidence 4567778888888878899999999999999999999999999999864
No 112
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=83.40 E-value=0.65 Score=39.36 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=45.4
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhC----CCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLS----LSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~----i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|..|..||....+.+.+|..+|++.++ ++...+.+.|..|.+.|++...
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEE
Confidence 36788999998887778899999999999 7899999999999999999764
No 113
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=83.39 E-value=1.3 Score=37.33 Aligned_cols=46 Identities=13% Similarity=0.298 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 446 TFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 446 ~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
..|..||..+.+ ...|+.+|++.+|++...+.++|..|.+.|++..
T Consensus 32 ~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~ 77 (119)
T 2lkp_A 32 PSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVG 77 (119)
T ss_dssp HHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 567778877776 6799999999999999999999999999998864
No 114
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=83.29 E-value=1.6 Score=42.30 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=45.2
Q ss_pred HHHHHhhcCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecC
Q psy16234 449 MAILLLFEKND-AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLG 508 (609)
Q Consensus 449 ~~iLllFn~~~-~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~ 508 (609)
..||.+|.+.+ .+|+.||++.+|++...+.+.|..|.+.|++.... +..|.+...
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~-----~~~Y~lg~~ 66 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKK-----DKRYVPGYK 66 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECT-----TSCEEECTH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEECC-----CCcEEECHH
Confidence 35777787654 79999999999999999999999999999997652 456777554
No 115
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=83.04 E-value=1.3 Score=34.64 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=38.8
Q ss_pred hhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 548 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 548 ~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
.|...++.++.++.++|... |.++...|.+-|+.|.++|+|+|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~-------l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQT-------LNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHH-------TTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 47777888899998877744 889999999999999999999997
No 116
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=83.03 E-value=1.7 Score=38.33 Aligned_cols=48 Identities=10% Similarity=0.236 Sum_probs=39.5
Q ss_pred ecHHHHHHHHhhcCC-----CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccc
Q psy16234 444 MQTFQMAILLLFEKN-----DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~-----~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
+|..|..||...... +.+|..+|++.++++...+.+.+..|.+.|++.
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr 83 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVR 83 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 567899888777653 359999999999999999999999999999884
No 117
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=82.99 E-value=0.99 Score=38.35 Aligned_cols=51 Identities=10% Similarity=0.218 Sum_probs=45.6
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhC----CCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLS----LSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~----i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|..|..||..+-+.+.+|..+|++.++ ++...+.+.|..|.+.|++...
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 46789999998888788899999999997 5899999999999999999765
No 118
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=82.75 E-value=1.6 Score=42.60 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=45.1
Q ss_pred HHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecC
Q psy16234 450 AILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLG 508 (609)
Q Consensus 450 ~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~ 508 (609)
.||.+|.+ ...+|+.||++.+|++...+.+.|..|.+.|++..++ ++.|.+...
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~-----~~~Y~lg~~ 81 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRA-----DGSYSLGPE 81 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECT-----TSCEEECHH
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC-----CCeEEecHH
Confidence 57777864 4689999999999999999999999999999998764 237877554
No 119
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=81.95 E-value=1.7 Score=36.47 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=44.0
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHh--CCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVL--SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t--~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+....-.||.+..+...+|..+|++.+ |++...+.++|..|.+.|++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 456677788888776789999999999 99999999999999999999764
No 120
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=81.87 E-value=2.1 Score=37.01 Aligned_cols=45 Identities=7% Similarity=0.145 Sum_probs=38.2
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHhcCccccC
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVL-SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t-~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+.||.... .+..++.||++.+ |++...|.+.|..|.+.|++.+.
T Consensus 28 ~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~ 73 (131)
T 4a5n_A 28 KGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHRE 73 (131)
T ss_dssp HHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEE
Confidence 445665554 5689999999999 99999999999999999999765
No 121
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=81.69 E-value=2.5 Score=35.98 Aligned_cols=47 Identities=17% Similarity=0.424 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 446 TFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 446 ~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+.+..||..+.+ +..++.+|++.+|++...+.++|..|.+.|++...
T Consensus 46 ~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 355667766654 57899999999999999999999999999998653
No 122
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=81.37 E-value=1.8 Score=37.62 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=45.0
Q ss_pred ecHHHHHHHHhhcC-CCCCCHHHHHHHhC----CCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEK-NDAMTCGDIQTVLS----LSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~-~~~lt~~ei~~~t~----i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||..+-+ .+.+|..+|++.++ ++...+.+.|..|.+.|++...
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 57889999988877 58899999999997 8999999999999999999765
No 123
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=81.15 E-value=2.7 Score=37.64 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 447 FQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 447 ~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
....||.+..++..+|+.+|++.+|++...+.+.+..|.+.|++..
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeee
Confidence 3456788888888999999999999999999999999999999874
No 124
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=81.13 E-value=1.5 Score=47.62 Aligned_cols=129 Identities=13% Similarity=0.122 Sum_probs=86.3
Q ss_pred cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecCCCCCcceEEeccccccCChhHHhhhhh
Q psy16234 456 EKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVS 535 (609)
Q Consensus 456 n~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~F~~~~~ki~i~~~~~~~~~~e~~~~~~ 535 (609)
..++.+|+.+|...|+++...++..|..|++.+++...+.+ .+...|.+|.+= --.+++.|- ...
T Consensus 29 l~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~-~~~~~Y~~~~~~--il~~lR~pk------------~l~ 93 (534)
T 2xub_A 29 IRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHK-RGVVEYEAQCSR--VLRMLRYPR------------YIY 93 (534)
T ss_dssp HHHCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET-TTEEEEEECHHH--HHGGGGHHH------------HHH
T ss_pred HhcCCcCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCC-CCcEEEEEChhh--HHHHHhhHH------------HHH
Confidence 34578999999999999999999999999999998653200 011344444320 000111110 000
Q ss_pred hHHHHhhhhhhhhhhhhhccccCCChHHHHHHHHHhhcC-----CCCChHHHHHHHHHhhhhccccccCC
Q psy16234 536 SVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-----FAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 536 ~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~-----F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
.-+.+---.-|.|+-..=..+.++.++|+..+...+.. =.++...+...+..|++.+||.|.+.
T Consensus 94 -~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 94 -TTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred -HHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 11122223346777777788999999999888776431 12678999999999999999999874
No 125
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=80.91 E-value=2.1 Score=41.60 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=46.3
Q ss_pred HHHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecCC
Q psy16234 449 MAILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLGY 509 (609)
Q Consensus 449 ~~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~F 509 (609)
..||.+|.+ ...+|+.||++.+|++...+.+.|..|.+.|++..+ +..|.+...+
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~------~~~Y~Lg~~~ 72 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS------GGRWSLTPRV 72 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE------TTEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC------CCEEEEcHHH
Confidence 357888875 467999999999999999999999999999999875 3678876553
No 126
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=80.87 E-value=1.5 Score=34.17 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=44.8
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeec
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 608 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yi 608 (609)
+..|.+++-....++..+|...+-.. -.++.+.+...|+.|.++|||+|..+ ...+.|-
T Consensus 11 e~~vL~~L~~~~~~t~~ei~~~l~~~---~~~s~~Tv~~~l~rL~~kGlv~r~~~-gr~~~y~ 69 (82)
T 1p6r_A 11 ELEVMKVIWKHSSINTNEVIKELSKT---STWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYT 69 (82)
T ss_dssp HHHHHHHHHTSSSEEHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHhhc---CCccHHHHHHHHHHHHHCCCeEEEec-CCEEEEE
Confidence 44556666557788999888776543 23678999999999999999999875 3577774
No 127
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=80.83 E-value=0.86 Score=40.94 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=41.4
Q ss_pred ecHHHHHHHHhhcC--CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEK--NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~--~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..... .+.+|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 95 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRT 95 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeec
Confidence 46788888887776 468999999999999999999999999999999765
No 128
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=80.79 E-value=1.8 Score=42.35 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=46.5
Q ss_pred HHHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecCC
Q psy16234 449 MAILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLGY 509 (609)
Q Consensus 449 ~~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~F 509 (609)
..||.+|.+ ...+|+.||++.+|++...+.+.|..|...|++..+ +..|.+...+
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATD------GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES------SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec------CCEEEEcHHH
Confidence 357888875 468999999999999999999999999999999875 3678886554
No 129
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=80.68 E-value=0.99 Score=37.08 Aligned_cols=61 Identities=13% Similarity=0.296 Sum_probs=46.0
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 609 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yia 609 (609)
-|..|.+++-....++..+|.+.+... -.++...+...|+.|.++|+|+|..+ ...|.|-|
T Consensus 36 ~e~~VL~~L~~~~~~t~~eL~~~l~~~---~~~s~sTVt~~L~rLe~KGlV~R~~~-gR~~~Y~p 96 (99)
T 2k4b_A 36 AELIVMRVIWSLGEARVDEIYAQIPQE---LEWSLATVKTLLGRLVKKEMLSTEKE-GRKFVYRP 96 (99)
T ss_dssp SCSHHHHHHHHHSCEEHHHHHHTCCGG---GCCCHHHHHHHHHHHHHTTSCEEEEE-TTEEEEEC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhcc---cCCCHhhHHHHHHHHHHCCCEEEEeC-CCEEEEEE
Confidence 456677777667778888777554322 24678999999999999999999875 47888865
No 130
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=80.60 E-value=1.5 Score=35.13 Aligned_cols=45 Identities=11% Similarity=0.202 Sum_probs=38.9
Q ss_pred hhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 548 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 548 ~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
.|...++.++.++.++|... |.++...|.+-|+.|.++|+|.|..
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~-------l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSAR-------LQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHH-------TTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 46777788888888877744 8899999999999999999999974
No 131
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=79.88 E-value=1.8 Score=36.45 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=40.4
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++....||.++.+ +..|+.+|++.+|++...+.++|..|.+.|++...
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~ 64 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTH 64 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3455667766664 67899999999999999999999999999999754
No 132
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=79.39 E-value=3.4 Score=34.06 Aligned_cols=45 Identities=9% Similarity=0.236 Sum_probs=37.6
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHhcCccccC
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVL-SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t-~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
...||.... .+..++.||++.+ |++...+.+.|..|.+.|++.+.
T Consensus 16 ~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~ 61 (107)
T 2hzt_A 16 KXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRI 61 (107)
T ss_dssp HHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEe
Confidence 344554444 4679999999999 99999999999999999999764
No 133
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=79.18 E-value=1.8 Score=36.49 Aligned_cols=49 Identities=18% Similarity=0.374 Sum_probs=41.3
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.++.+..||..+.+ ...++.+|++.+|++...+.++|..|.+.|++...
T Consensus 19 ~~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~ 67 (118)
T 2jsc_A 19 ADPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVAT 67 (118)
T ss_dssp SSHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEE
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEE
Confidence 35667777776664 46899999999999999999999999999999754
No 134
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=78.90 E-value=1.3 Score=35.71 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=37.4
Q ss_pred cHHHHHHHHhhc-CCCC---CCHHHHHHHhCCCHHHHHHHHHHHHhcCcc
Q psy16234 445 QTFQMAILLLFE-KNDA---MTCGDIQTVLSLSQDQIGRHIASLVECKLL 490 (609)
Q Consensus 445 s~~Q~~iLllFn-~~~~---lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL 490 (609)
+.-+..||+.+- ..+. +|..+|++.++++...+.+.|..|.+.|++
T Consensus 11 ~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 11 KEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred chhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 445666666553 2233 999999999999999999999999999998
No 135
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=78.39 E-value=2.4 Score=36.77 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=36.4
Q ss_pred HHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 451 ILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 451 iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
|+.+....+.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 13 i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~ 55 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3334445567999999999999999999999999999999764
No 136
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=78.26 E-value=5.2 Score=38.24 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=45.7
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc-CC--C-CCCCCCEEEEecC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS-NK--E-ELTEDTEIRLNLG 508 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~-~~--~-~~~~~~~f~lN~~ 508 (609)
++....||.+..+ ..+|+.+|++.+|++...+.++|..|.+.|++.. .. . .-.+...|+++..
T Consensus 11 ~~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~ 77 (232)
T 2qlz_A 11 NKVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIA 77 (232)
T ss_dssp SHHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCC
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccc
Confidence 3455567766654 6799999999999999999999999999999976 21 1 1112345777654
No 137
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.12 E-value=2.3 Score=34.50 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=45.6
Q ss_pred EecHHHHHHHHhhcC--CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEK--NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~--~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.++..|..|+-+..+ +..++..+|...|+|+...+.++|..|...|++...
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEe
Confidence 468899999988877 567999999999999999999999999999988654
No 138
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=77.79 E-value=2.2 Score=35.34 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=36.1
Q ss_pred HHHh-hcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 451 ILLL-FEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 451 iLll-Fn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
|+.. +..++.+|..+|++.+|++...+.++|..|...|++...
T Consensus 23 Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 23 VLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4433 345557999999999999999999999999999998654
No 139
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=77.02 E-value=2.2 Score=37.83 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=41.4
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++....||.++. ...+|+.+|++.+|++...+.++|..|.+.|++...
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~ 104 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPR 104 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 466777887776 467999999999999999999999999999999753
No 140
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=76.75 E-value=3 Score=38.95 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=47.8
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC---CCCCCCCEEEEecC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK---EELTEDTEIRLNLG 508 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~---~~~~~~~~f~lN~~ 508 (609)
++.+..||.+..+ +.+|+.+|++.+|++...+.++|..|.+.|++.... +.-.+...|+++..
T Consensus 14 ~~~rl~IL~~L~~-~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~ 79 (202)
T 2p4w_A 14 NETRRRILFLLTK-RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKG 79 (202)
T ss_dssp SHHHHHHHHHHHH-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTT
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChH
Confidence 4567778877754 679999999999999999999999999999997642 11123345666654
No 141
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=76.63 E-value=3.7 Score=31.92 Aligned_cols=59 Identities=8% Similarity=0.224 Sum_probs=45.0
Q ss_pred hhhhhhhccc--cCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q psy16234 547 AAIVRIMKSR--KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSY 607 (609)
Q Consensus 547 A~IVRiMK~~--k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Y 607 (609)
..|..++... +.++..+|...+.+.. ..++.+.|-+.|+.|.+.|+|.|...+.+...|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~--~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMG--EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhC--CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 4566666655 6899999998876543 357899999999999999999997764445554
No 142
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=76.61 E-value=3.1 Score=35.79 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=40.3
Q ss_pred EecHHHHHHHHhh----cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLF----EKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllF----n~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.++..|..+|..+ ..++.+|..+|++.+|++...+.+.|..|.+.|++...
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec
Confidence 3455565555443 24578999999999999999999999999999998754
No 143
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=75.75 E-value=4.1 Score=37.72 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=42.1
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+..+..||.+..+ +.+|..+|++.+|++...+.++|..|.+.|++...
T Consensus 18 ~d~~~~~IL~~L~~-~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLRN-KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 35667777777764 68999999999999999999999999999999764
No 144
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=75.64 E-value=0.76 Score=37.79 Aligned_cols=51 Identities=10% Similarity=0.201 Sum_probs=43.1
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhC----CCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLS----LSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~----i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|..|..||..+-+.+.+|..||++.++ ++...+.+.|..|.+.|++.+.
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 35667878887776677899999999997 5689999999999999999765
No 145
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=74.66 E-value=2.5 Score=35.27 Aligned_cols=46 Identities=9% Similarity=0.246 Sum_probs=38.4
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHhcCccccC
Q psy16234 447 FQMAILLLFEKNDAMTCGDIQTVL-SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 447 ~Q~~iLllFn~~~~lt~~ei~~~t-~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
....||....+ +.+++.+|++.+ |++...+.++|..|.+.|++...
T Consensus 23 ~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~ 69 (112)
T 1z7u_A 23 WKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRE 69 (112)
T ss_dssp THHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEe
Confidence 45556655444 679999999999 99999999999999999999764
No 146
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=74.62 E-value=3.8 Score=34.10 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=38.4
Q ss_pred cHHHHHHHHhhcCCCCCC--HHHHHHHh-CCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMT--CGDIQTVL-SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt--~~ei~~~t-~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
......||....+ +..+ +.||++.+ |++...+.++|..|.+.|++.+.
T Consensus 26 ~~wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~ 76 (111)
T 3df8_A 26 KKYTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERR 76 (111)
T ss_dssp STTHHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CccHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3345556655553 4445 99999999 99999999999999999999765
No 147
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=74.20 E-value=2.5 Score=44.95 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=47.0
Q ss_pred EecHHHHHHHHhhcCC--CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKN--DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~--~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
-+|..|..||....++ +.+|..+|++.++++...+.+.|..|.+.|++.+.
T Consensus 401 ~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 401 NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 4678999999998887 88999999999999999999999999999999775
No 148
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=73.72 E-value=3 Score=40.41 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=44.5
Q ss_pred ecHHHHHHHHhhcCCC--CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKND--AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~--~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||.....++ .+|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 156 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~ 207 (250)
T 1p4x_A 156 LSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKE 207 (250)
T ss_dssp SCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEE
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 5678999998876654 5999999999999999999999999999999875
No 149
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=73.60 E-value=4.4 Score=34.89 Aligned_cols=47 Identities=13% Similarity=0.314 Sum_probs=38.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHhcCccccC
Q psy16234 446 TFQMAILLLFEKNDAMTCGDIQTVL-SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 446 ~~Q~~iLllFn~~~~lt~~ei~~~t-~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+...||.... .+.+++.+|++.+ |++...+.++|..|.+.|++.+.
T Consensus 35 ~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~ 82 (131)
T 1yyv_A 35 RWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRV 82 (131)
T ss_dssp HHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEE
Confidence 34455665554 4679999999999 79999999999999999999764
No 150
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=73.22 E-value=7.1 Score=31.52 Aligned_cols=43 Identities=23% Similarity=0.202 Sum_probs=36.8
Q ss_pred HHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 449 MAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 449 ~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+.||..... + ++..+|+..+|++...+.+.+..|.+.|++...
T Consensus 11 ~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 11 QAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 445655554 3 899999999999999999999999999999765
No 151
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=72.85 E-value=3.5 Score=33.21 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=41.0
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 605 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y 605 (609)
+..|...+.....++..+|...+.+. +..+.+.+-+.|..|.++|||+|..+.+..+
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~~---l~is~~tvs~~l~~Le~~gli~r~~~~r~~~ 66 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNAE---FPMSTATFYDAKKFLIQEGFVKERQERGEKR 66 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHTT---SCCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHH---cCCCHHHHHHHHHHHHHCCCEEEEecCCceE
Confidence 34455555556778887776554443 5588999999999999999999976544433
No 152
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=72.75 E-value=1.1 Score=40.77 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=43.7
Q ss_pred ecHHHHHHHHhhcCCC---CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKND---AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~---~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++..|..||..+...+ .+|..+|++.++++...+.+.|..|.+.|++...
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 4678888888776644 3999999999999999999999999999999765
No 153
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=72.69 E-value=6.3 Score=34.53 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=37.0
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
-..||.... .+..++.||++.+|++...+.++|..|.+.|++.+.
T Consensus 26 ~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~ 70 (146)
T 2f2e_A 26 SMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAV 70 (146)
T ss_dssp HHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEE
Confidence 334554333 357899999999999999999999999999999765
No 154
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=72.47 E-value=5 Score=33.01 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=35.9
Q ss_pred HHHHhhcCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHhcCccccC
Q psy16234 450 AILLLFEKNDAMTCGDIQTVL-SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t-~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.||.... .+..++.+|++.+ |++...+.++|..|.+.|++...
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~ 72 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKK 72 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4554444 4679999999999 59999999999999999999764
No 155
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=70.91 E-value=3.1 Score=35.07 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=44.4
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeec
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 608 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yi 608 (609)
|..|.+++-....++..+|...+-.. ..++.+.+...|+.|.++|||.|..+. ..+.|.
T Consensus 12 q~~vL~~L~~~~~~t~~el~~~l~~~---~~~~~~Tvt~~l~rLe~kGlv~R~~~~-r~~~~~ 70 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVSANEIVVEIQKY---KEVSDKTIRTLITRLYKKEIIKRYKSE-NIYFYS 70 (126)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHTT---SCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhhc---CCCChhhHHHHHHHHHHCCceEEEeCC-CeEEEE
Confidence 55566666667788888887665432 246789999999999999999998754 466664
No 156
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=70.19 E-value=3.9 Score=31.68 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=41.3
Q ss_pred hhhhhhhhcccc---CCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q psy16234 546 QAAIVRIMKSRK---QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 605 (609)
Q Consensus 546 ~A~IVRiMK~~k---~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y 605 (609)
+-.|..+|+... .++..+|-.. + .++...|.+.|..|.++|+|+|.++.+..|
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~----L---gvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGK----L---GTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHH----H---CCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHH----H---CcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 345778888888 8888866643 3 477899999999999999999987665443
No 157
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=70.11 E-value=2.4 Score=41.12 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=45.4
Q ss_pred EecHHHHHHHHhhcC--CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEK--NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~--~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|..|..||....+ .+.+|..+|++.++++...+.+.|..|.+.|++.+.
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 367899999988866 458999999999999999999999999999999765
No 158
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=69.87 E-value=3.5 Score=33.43 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=37.6
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
++....||..+-..+..|+.+|++.+|++...+.++|..|.+. ++..
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~ 72 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKR 72 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEE
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhh
Confidence 4556667733333467999999999999999999999999999 7753
No 159
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=69.46 E-value=9.6 Score=35.95 Aligned_cols=85 Identities=9% Similarity=0.102 Sum_probs=62.3
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCCcceeeecccceEEEEEEEeCccEEEE-----ecHHHHHHHHhhcCCCCCCHHHHHH
Q psy16234 394 FSVPQELEKCIHMFEKFYHGQFNGRKLSWLHNISQVELKLSYLKRPYFVT-----MQTFQMAILLLFEKNDAMTCGDIQT 468 (609)
Q Consensus 394 ~~lP~~l~~~~~~F~~~Y~~k~~~RkL~W~~~l~~~~l~~~~~~~~~~l~-----~s~~Q~~iLllFn~~~~lt~~ei~~ 468 (609)
..=|..+..+.+.++. ||.+---.+|++|.+.++ .+..|..|+-+..+...+|..+++.
T Consensus 113 lVSp~Dl~~A~~~l~~----------------Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~~~g~vt~~~la~ 176 (218)
T 3cuq_B 113 LLSPEDLVNACKMLEA----------------LKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAK 176 (218)
T ss_dssp CCCHHHHHHHHHTTTT----------------TTCSEEEEECTTSBEEEEETTCCGGGGHHHHHHHHHHTSCBCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----------------cCCCEEEEEECCCcEEEEcCCCchHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 3457777777775543 333311123444554443 2358888987778788999999999
Q ss_pred HhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 469 VLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 469 ~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
..|.+....+..|..+.+.|++..+.
T Consensus 177 ~l~ws~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 177 LVGMSVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 99999999999999999999998773
No 160
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=69.45 E-value=6.6 Score=30.72 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=35.1
Q ss_pred HHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhc-Cccc
Q psy16234 450 AILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVEC-KLLT 491 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~-~iL~ 491 (609)
.|--+.++...+|+.+|+++||++++++..+|.-|.+- ||..
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaREdKI~~ 54 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVI 54 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhccCceeE
Confidence 35566777779999999999999999999999999974 5543
No 161
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=68.86 E-value=5.6 Score=34.42 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=48.4
Q ss_pred EecHHHHHHHHhhcCC--CCCCHHHHHHHh-----CCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEe
Q psy16234 443 TMQTFQMAILLLFEKN--DAMTCGDIQTVL-----SLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLN 506 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~--~~lt~~ei~~~t-----~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN 506 (609)
.+|.-..+||..+.+. ..+|.+||.+.+ +++...+-++|..|++.|++.+... -.....|.++
T Consensus 15 r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~-~~~~~~Y~~~ 84 (136)
T 1mzb_A 15 KVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNF-DGGHAVFELA 84 (136)
T ss_dssp CCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECS-SSSSCEEEES
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEe-CCCceEEEeC
Confidence 4567777888777653 579999999998 8999999999999999999976430 0123567764
No 162
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=68.81 E-value=5.4 Score=34.95 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=49.2
Q ss_pred EecHHHHHHHHhhcC-CCCCCHHHHHHHh-----CCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 443 TMQTFQMAILLLFEK-NDAMTCGDIQTVL-----SLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~-~~~lt~~ei~~~t-----~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
.+|.-..+||-.+.+ ...+|.+||.+.+ +++...+-++|..|++.|++.+... -+....|.++.
T Consensus 19 r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~-~~~~~~Y~~~~ 88 (145)
T 2fe3_A 19 RITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTY-GDASSRFDFVT 88 (145)
T ss_dssp CCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECC-TTSCCEEEECC
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEee-CCCceEEECCC
Confidence 456777788877754 4679999999998 8999999999999999999976530 01235677764
No 163
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=67.45 E-value=4.5 Score=31.41 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=37.4
Q ss_pred hhhhhhhhhhhhhccc--cCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCC
Q psy16234 541 RKLYLQAAIVRIMKSR--KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANS 601 (609)
Q Consensus 541 R~~~i~A~IVRiMK~~--k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~ 601 (609)
|...|=..|-+-++.+ ...+..+|.+. |.++...|.+-|+.|.++|||.|+.+-
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~-------lgvS~~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADA-------AGLSIYQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHH-------HCCCHHHHHHHHHHHHHCCcEEecCCC
Confidence 4444444454444443 66777766533 345778899999999999999998754
No 164
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=66.99 E-value=7.9 Score=28.12 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=32.5
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHhcCcc
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVL-----SLSQDQIGRHIASLVECKLL 490 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t-----~i~~~~l~~~L~~L~~~~iL 490 (609)
+..|+.+.+..+.+|.+||++.+ +++...+.+.|. ..|++
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE
Confidence 34455566767889999999999 999999999999 44666
No 165
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=66.82 E-value=11 Score=28.10 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=34.0
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLV 485 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~ 485 (609)
.+|.-|..|+.++ ...+|..+|++.+|++...+..++..+.
T Consensus 11 ~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 11 LLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3567788888777 4567999999999999999999888865
No 166
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=66.74 E-value=6.4 Score=30.86 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=41.3
Q ss_pred hhhhhhhhcccc---CCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q psy16234 546 QAAIVRIMKSRK---QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 605 (609)
Q Consensus 546 ~A~IVRiMK~~k---~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y 605 (609)
+-.|..+|+... .++..+|-.+ + .++...|.++|..|.+.|+|.+.++.+..|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~----L---gvsr~tV~~~L~~Le~~G~I~~~g~~~~~W 67 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGK----L---GTPKKEINRVLYSLAKKGKLQKEAGTPPLW 67 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHH----H---TCCHHHHHHHHHHHHHTTSEEEESSSSCEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHH----H---CcCHHHHHHHHHHHHHCCCEEecCCCCCee
Confidence 445778888887 8888876644 3 477899999999999999999977655443
No 167
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=66.40 E-value=9.2 Score=28.92 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecCC
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLGY 509 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~F 509 (609)
--.|.-+|.++.-||+.+|.+.|+=|+..|+.+|...+ ++.+.+ .-.+.+.+-.+|
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia---~~~k~g---~~~~~weLKpEy 65 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG---VQNVKG---IHKNTWELKPEY 65 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC---CCBCCT---TCCCBBCCCCSS
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH---HHHcCC---CCCCeeeCcHHH
Confidence 34577889999999999999999999999999998874 454442 112455555554
No 168
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=65.88 E-value=8.3 Score=29.78 Aligned_cols=44 Identities=11% Similarity=0.152 Sum_probs=34.2
Q ss_pred hhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 548 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 548 ~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
.|.+.+.....++..+|... +..+...+.+.|..|.+.|+|++.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~-------lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEA-------LAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHH-------HTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 46666776677887766643 457789999999999999999954
No 169
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=65.54 E-value=7.4 Score=34.28 Aligned_cols=52 Identities=8% Similarity=0.111 Sum_probs=42.7
Q ss_pred EEecHHHHHHHHhhcC-CCCCCHHHHHHHh-----CCCHHHHHHHHHHHHhcCccccC
Q psy16234 442 VTMQTFQMAILLLFEK-NDAMTCGDIQTVL-----SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 442 l~~s~~Q~~iLllFn~-~~~lt~~ei~~~t-----~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+.+|.-..+||..+.+ .+.+|.+||.+.+ +++...+-++|..|++.|++.+.
T Consensus 23 ~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 23 LKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp --CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEE
Confidence 3456677788877754 4679999999998 89999999999999999999764
No 170
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=65.43 E-value=5.6 Score=34.13 Aligned_cols=50 Identities=18% Similarity=0.263 Sum_probs=41.7
Q ss_pred ecHHHHHHHHhhcC-CCCCCHHHHHHHh-----CCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEK-NDAMTCGDIQTVL-----SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~-~~~lt~~ei~~~t-----~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|.--.+||-.|.+ ...+|.+||.+.+ +++...+-++|..|++.|++.+.
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEE
Confidence 45556678877654 4579999999998 89999999999999999999764
No 171
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=64.49 E-value=6.8 Score=32.11 Aligned_cols=58 Identities=24% Similarity=0.381 Sum_probs=44.5
Q ss_pred HhhH-HHHHHHHHHHHhcCCCChhhhhhhhhhhhhhcc-cCCcccHHHHHHHHHhhhhhh
Q psy16234 11 NKTW-GSLQETIQGVITLGNVRRATWNDRFSDIYSLCV-AYPEPLADRLYQETKLFLDQH 68 (609)
Q Consensus 11 e~~W-~~l~~~i~~i~~~~~~~~~~~~~~y~~vy~~c~-~~~~~~~~~Ly~~~~~~l~~~ 68 (609)
|.|| +.++.....+++..|+++..+.+++..|---+. ..|..+..+|..+++.||.++
T Consensus 39 EcGW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~rIr~fL~~~ 98 (101)
T 4dhx_B 39 ECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQH 98 (101)
T ss_dssp HTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 5688 667777777776656666678888888766654 468889999999999999865
No 172
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=64.30 E-value=12 Score=29.00 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=33.8
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
+|.-|..|+.++ ...+|.+||++.+|++...++.++....+
T Consensus 22 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 22 LTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 566777777776 35689999999999999999998887653
No 173
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=63.20 E-value=6.6 Score=34.62 Aligned_cols=64 Identities=9% Similarity=0.196 Sum_probs=48.3
Q ss_pred EEecHHHHHHHHhhcCC--CCCCHHHHHHHh-----CCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEe
Q psy16234 442 VTMQTFQMAILLLFEKN--DAMTCGDIQTVL-----SLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLN 506 (609)
Q Consensus 442 l~~s~~Q~~iLllFn~~--~~lt~~ei~~~t-----~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN 506 (609)
+.+|.-..+||..+.+. ..+|.+||.+.+ +++...+-++|..|++.|++.+... -.....|.++
T Consensus 13 ~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~-~~~~~~Y~~~ 83 (150)
T 2w57_A 13 LKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHF-EGGKSVFELS 83 (150)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEC-GGGCEEEEEC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEe-CCCceEEEec
Confidence 34667778888777654 579999999998 8999999999999999999976420 0112457664
No 174
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=62.97 E-value=5.6 Score=34.37 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=43.1
Q ss_pred hhhhhhhhhcc-ccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeec
Q psy16234 545 LQAAIVRIMKS-RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 608 (609)
Q Consensus 545 i~A~IVRiMK~-~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yi 608 (609)
-|..|.+++-. ...++..+|...+... -.++.+.+...|+.|.++|||.|..+. ..+.|.
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~---~~~~~~Tvt~~l~rLe~kGlv~r~~~~-r~~~~~ 70 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSAR---RDLAYTTVMAVLQRLAKKNLVLQIRDD-RAHRYA 70 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTT---CCCCHHHHHHHHHHHHHTTSEEEEC----CCEEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcc---CCCCHHHHHHHHHHHHHCCCEEEEecC-CeEEEE
Confidence 45566777766 4788888888665332 236789999999999999999998754 466663
No 175
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=62.56 E-value=6.2 Score=33.00 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=43.3
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeec
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 608 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yi 608 (609)
+..|..++...+.++..+|...+-.. ..++.+.+.+.|+.|.++|||+|..+| ..+.|+
T Consensus 12 ~~~vL~~l~~~~~~t~~ela~~l~~~---~~~s~~tv~~~l~~L~~~Glv~r~~~~-rr~~~~ 70 (123)
T 1okr_A 12 EWEVMNIIWMKKYASANNIIEEIQMQ---KDWSPKTIRTLITRLYKKGFIDRKKDN-KIFQYY 70 (123)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHhcc---CCCcHhhHHHHHHHHHHCCCeEEEecC-CeEEEE
Confidence 34455555556788998888776543 236789999999999999999998764 455554
No 176
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=61.88 E-value=6.5 Score=33.29 Aligned_cols=49 Identities=14% Similarity=0.329 Sum_probs=38.3
Q ss_pred hhhhhhhhhhccccC--CChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 544 YLQAAIVRIMKSRKQ--IRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 544 ~i~A~IVRiMK~~k~--l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
..+..|.+++..... ++..+|...+ ..+.+.+-+.|+.|.++|||.|..
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l-------~~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSL-------KLDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHH-------TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCEEeeC
Confidence 446777777776655 8888776443 367899999999999999999853
No 177
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=60.77 E-value=8.2 Score=36.80 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=35.6
Q ss_pred HHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 450 AILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.|+.+. .+++.|.++|++.+|++..++..+|..|.+.|++...
T Consensus 169 ~l~~~l-~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~ 211 (232)
T 2qlz_A 169 ILHYLL-LNGRATVEELSDRLNLKEREVREKISEMARFVPVKII 211 (232)
T ss_dssp HHHHHH-HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHH-hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEe
Confidence 334344 3467899999999999999999999999999999543
No 178
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=60.76 E-value=11 Score=34.61 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=40.6
Q ss_pred ecHHHHHHHHhhcC-----CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 444 MQTFQMAILLLFEK-----NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 444 ~s~~Q~~iLllFn~-----~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+|.-|..||....+ .-..|..||++.+|++...+.++|..|.+.|+|...+
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 35567777755432 3468999999999999999999999999999988764
No 179
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=59.64 E-value=10 Score=35.53 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=38.3
Q ss_pred HHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 450 AILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|+.+-.+++.++..+|++.+|++...+.++|..|.+.|++...
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~ 53 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKD 53 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEe
Confidence 34555556788999999999999999999999999999999775
No 180
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=59.20 E-value=16 Score=27.66 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=33.1
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
+|.-|-.|+.++ ...+|..||++.+|++...+..++....+
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456677777776 45789999999999999999988877653
No 181
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=58.99 E-value=14 Score=37.05 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 447 FQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 447 ~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
-+..||.++++...+|.++|++.+|++...+.+.|..|.+.|++..
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~ 51 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVF 51 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEE
Confidence 4556777778888899999999999999999999999999998753
No 182
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=58.79 E-value=6.7 Score=34.01 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHHhhhhccccc
Q psy16234 575 FAPSISMIKKCIESLIDKNYVER 597 (609)
Q Consensus 575 F~~~~~~ik~~Ie~LIekeyl~r 597 (609)
...++..|-+.|..|++||||+|
T Consensus 61 ~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 61 MSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp SSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HCcCHHHHHHHHHHHHHCCCEEE
Confidence 67889999999999999999999
No 183
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=58.75 E-value=13 Score=29.66 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=35.0
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
.+|.-|..|+.++ ...+|..||++.+|++...++.++....+
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3677788888777 45689999999999999999998888763
No 184
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=58.42 E-value=17 Score=28.86 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=36.1
Q ss_pred EEecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 442 VTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 442 l~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
..+|.-|..||.++- ..+|..||++.+|++...++.++..+.+
T Consensus 28 ~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 28 DVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp -CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456778888887776 5689999999999999999999998764
No 185
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=58.04 E-value=14 Score=37.37 Aligned_cols=43 Identities=7% Similarity=0.091 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 459 DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 459 ~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
...|++||++.+|+++..+.+.|..|+..|+|... ++.|..+.
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~------~~~y~~t~ 105 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE------DGKWSLTE 105 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE------TTEEEECH
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEee------CCeEecCH
Confidence 67999999999999999999999999999999875 35787764
No 186
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=57.21 E-value=11 Score=37.44 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 459 DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 459 ~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
...|++||++.+|++...+.+.|..|+..|++... ++.|..+.
T Consensus 38 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~------~~~y~~t~ 80 (335)
T 2r3s_A 38 GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ------AEGYRLTS 80 (335)
T ss_dssp SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE------TTEEEECH
T ss_pred CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec------CCEEecCH
Confidence 67999999999999999999999999999999764 46777653
No 187
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=57.08 E-value=11 Score=28.96 Aligned_cols=42 Identities=5% Similarity=0.124 Sum_probs=35.3
Q ss_pred HHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccc
Q psy16234 450 AILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 450 ~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
.||-.+.+ ...++..+|++.+|++.+++.++|..|-+.|.+.
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 46666665 4689999999999999999999999999876654
No 188
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=56.98 E-value=11 Score=29.88 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=40.3
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 605 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y 605 (609)
.+..|.+.+.....++..+|... +..+.+.+.+.|..|.+.|+|.+..+.+..|
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~-------l~is~~tvs~~l~~L~~~glv~~~~~~r~~~ 78 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRI-------TGLSASATSQHLARMRDEGLIDSQRDAQRIL 78 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHH-------HCCCHHHHHHHHHHHHHTTSEEEEECSSCEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 44567777777667888776644 3467899999999999999999877544333
No 189
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=56.91 E-value=8.3 Score=33.73 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=46.5
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEe
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVL-----SLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLN 506 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t-----~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN 506 (609)
.+|.--.+||-.+.+.+.+|.++|.+.+ +++...+-|+|..|+..|++.+-.. -+....|.++
T Consensus 16 r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~-~~~~~~Y~~~ 83 (145)
T 3eyy_A 16 RLTPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHL-GHGAPTYHLA 83 (145)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEEC-GGGCEEEEET
T ss_pred CcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEe-CCCceEEEeC
Confidence 4566677788766654589999999887 7899999999999999999876420 0112456665
No 190
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=56.90 E-value=9.5 Score=31.22 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=36.6
Q ss_pred HHHhhcCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 451 ILLLFEKNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 451 iLllFn~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
|+-.+..++.+ |..+|++.+|++...+.++|..|...|++...
T Consensus 33 I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 33 IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp HTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44555556667 99999999999999999999999999998654
No 191
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=56.82 E-value=22 Score=29.63 Aligned_cols=57 Identities=9% Similarity=0.129 Sum_probs=49.2
Q ss_pred hhhhhhhhhhhhhccccCCChHHHHHHHHHhhcC-CCCChHHHHHHHHHhhhhcccccc
Q psy16234 541 RKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 541 R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
++-.++.+|..++. .+.+.--+|.+.+.+.... +.++.+.+-..+..|.++|+|++.
T Consensus 9 ~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 9 LRAQTNVILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhchHHHHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 45678899999997 4778888999998877766 889999999999999999999986
No 192
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=56.59 E-value=15 Score=32.05 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=34.4
Q ss_pred hhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 454 LFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 454 lFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+...++.+|..+|++.+|++...+.++|..|.+.|++...
T Consensus 48 ~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 3334467899999999999999999999999999998654
No 193
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=56.38 E-value=12 Score=37.87 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 458 NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 458 ~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
....|++||++.+|++...+.+.|..|+..|++.... ++.|.++.
T Consensus 50 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~-----~g~y~~t~ 94 (360)
T 1tw3_A 50 AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA-----PGEFVPTE 94 (360)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE-----TTEEEECT
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecC-----CCeEEeCH
Confidence 3579999999999999999999999999999998642 35677764
No 194
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=56.34 E-value=12 Score=37.96 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=40.6
Q ss_pred HHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 452 LLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 452 LllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
.-.+.+ ..++|++||++.+|+++..+.+.|..|+..|++... ++.|..+.
T Consensus 41 fd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~------~~~y~~t~ 91 (363)
T 3dp7_A 41 FQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE------EDRYVLAK 91 (363)
T ss_dssp HHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE------TTEEEECH
T ss_pred HHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec------CCEEeccc
Confidence 333434 468999999999999999999999999999999764 36777653
No 195
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=55.90 E-value=15 Score=36.67 Aligned_cols=43 Identities=9% Similarity=0.136 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEe
Q psy16234 459 DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLN 506 (609)
Q Consensus 459 ~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN 506 (609)
...|++||++.+|+++..+.+.|..|+..|++...+ ++.|..+
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~-----~~~y~~t 82 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDT-----RDGYANT 82 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-----TTEEEEC
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecC-----CCeEecC
Confidence 579999999999999999999999999999998652 3577765
No 196
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=54.35 E-value=13 Score=26.86 Aligned_cols=37 Identities=8% Similarity=0.206 Sum_probs=33.3
Q ss_pred cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 456 EKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 456 n~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
|.+.-+.++.+++..|++.+++...|..|...|++..
T Consensus 21 ~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 21 NNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeec
Confidence 4567789999999999999999999999999998864
No 197
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=53.55 E-value=18 Score=37.34 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=45.9
Q ss_pred HHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCC-----CCCCCEEEEecCC
Q psy16234 449 MAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEE-----LTEDTEIRLNLGY 509 (609)
Q Consensus 449 ~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~-----~~~~~~f~lN~~F 509 (609)
..||-+..++..+|-.||++.||++...+.+.+..|.+.|++...+.. =.+...+.+|.+.
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~~~~~~~~~GR~~~~l~~~~~~ 84 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQELEIKEAGNRGRPAVGLVVETEA 84 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC-------------CEEECCTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEeecccCCCCCCCCCeEEEEcCCc
Confidence 457777777789999999999999999999999999999998764311 1133457888775
No 198
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=53.04 E-value=17 Score=27.99 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=35.4
Q ss_pred HHHHhhcCCCCCCHHHHHHHhCC-CHHHHHHHHHHHHhc-Cccc
Q psy16234 450 AILLLFEKNDAMTCGDIQTVLSL-SQDQIGRHIASLVEC-KLLT 491 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t~i-~~~~l~~~L~~L~~~-~iL~ 491 (609)
.|--+.|+...+|+.+|++.||+ +++++..+|.-|.+- ||..
T Consensus 14 ~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI~~ 57 (77)
T 2l01_A 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVT 57 (77)
T ss_dssp HHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCceEE
Confidence 45567788789999999999999 999999999999974 4543
No 199
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=52.95 E-value=17 Score=24.23 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=26.6
Q ss_pred HHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy16234 449 MAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLV 485 (609)
Q Consensus 449 ~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~ 485 (609)
..|+.++.+ .+|..+|++.+|++...+.+.+...-
T Consensus 12 ~~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 12 AQLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred HHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 345555543 47999999999999999988876543
No 200
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=52.43 E-value=16 Score=31.55 Aligned_cols=65 Identities=9% Similarity=0.128 Sum_probs=48.5
Q ss_pred EEecHHHHHHHHhhcC-CCCCCHHHHHHHh-----CCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 442 VTMQTFQMAILLLFEK-NDAMTCGDIQTVL-----SLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 442 l~~s~~Q~~iLllFn~-~~~lt~~ei~~~t-----~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
+.+|.--.+||-.+.+ .+.+|.+||.+.+ +++...+-++|..|++.|++.+... -.....|.++.
T Consensus 10 ~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~-~~g~~~Y~~~~ 80 (139)
T 3mwm_A 10 GRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRT-AEGESVYRRCS 80 (139)
T ss_dssp CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEEC-TTSCEEEECCS
T ss_pred CccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEc-CCCceEEEECC
Confidence 4556677788877765 4689999999987 7999999999999999999976420 01134576654
No 201
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=52.10 E-value=21 Score=35.45 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEe
Q psy16234 459 DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLN 506 (609)
Q Consensus 459 ~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN 506 (609)
..+|.+||++.+|+++..+.+.|..|+..|++...+ ++.|..+
T Consensus 37 g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~-----~~~y~~t 79 (332)
T 3i53_A 37 GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDG-----QGVYGLT 79 (332)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT-----TSBEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecC-----CCeEEcC
Confidence 589999999999999999999999999999998752 3556554
No 202
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=51.83 E-value=15 Score=37.16 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 458 NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 458 ~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
...+|++||++.+|++...+.+.|..|+..|++...
T Consensus 47 ~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~ 82 (374)
T 1qzz_A 47 AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGG 82 (374)
T ss_dssp TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECC
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEe
Confidence 357999999999999999999999999999999874
No 203
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=51.69 E-value=18 Score=36.36 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=36.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEe
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLN 506 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN 506 (609)
.+|++||++.+|+++..+.+.|..|+..|++... ++.|..+
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~------~~~y~~t 96 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKE------GDAFRNT 96 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE------TTEEEEC
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEec------CCeeecC
Confidence 8999999999999999999999999999999875 3566654
No 204
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=51.42 E-value=4.5 Score=32.93 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=35.7
Q ss_pred hhcCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 454 LFEKNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 454 lFn~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
.+...+.+ |..+|++.+|++...+.++|..|...|++...+
T Consensus 28 ~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 28 ELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp SCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEET
T ss_pred CCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 34556777 999999999999999999999999999997653
No 205
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=51.41 E-value=28 Score=28.74 Aligned_cols=39 Identities=10% Similarity=0.270 Sum_probs=34.4
Q ss_pred hcCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 455 FEKNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 455 Fn~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
|..++.+ |..+|++..|++...+.++|..|...|+|...
T Consensus 27 ~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 27 YVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4445677 99999999999999999999999999998755
No 206
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=50.98 E-value=21 Score=25.05 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=36.5
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Q psy16234 305 KMLAKRLIHQQSTSMDGEEAMINKLKQACGYEFTNKFHRMLTDIKI 350 (609)
Q Consensus 305 ~~La~RLL~~~s~s~~~E~~~i~~Lk~~~G~~~t~kl~~M~~Di~~ 350 (609)
+-+.+|++.......+.-..|+..|+..-|........+|+.-|-.
T Consensus 4 rsViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~ 49 (56)
T 1oks_A 4 RSVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIM 49 (56)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 3467888876666677888899999988898888888888877653
No 207
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=50.87 E-value=16 Score=33.27 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=42.7
Q ss_pred HHHHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCc-cccCCCCCCCCCEEEEecCC
Q psy16234 448 QMAILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKL-LTSNKEELTEDTEIRLNLGY 509 (609)
Q Consensus 448 Q~~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~i-L~~~~~~~~~~~~f~lN~~F 509 (609)
+..||.++.+ ...+|..+|++.+|++...+.+.|..|...|+ +... ...|.+....
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~------~~Gy~l~~~~ 80 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT------PRGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE------TTEEECCTTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE------CCEEEECCcc
Confidence 4456766664 45699999999999999999999999999998 5433 2456666543
No 208
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=49.16 E-value=15 Score=33.73 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=39.4
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccc
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
|-.|+.+.+++..+|++||++.++++...+++-|.-|...+++.
T Consensus 14 ~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~l~~ 57 (190)
T 4a0z_A 14 REAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRK 57 (190)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcchhh
Confidence 66789999999999999999999999999999999998666554
No 209
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=48.70 E-value=10 Score=32.83 Aligned_cols=51 Identities=8% Similarity=0.235 Sum_probs=35.2
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccc----cCCCCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVER----TANSTD 603 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r----~~~~~~ 603 (609)
-+..|...+ ..+.++..+|...+ ..+.+.+-+.|..|.++|||+| ++.|+-
T Consensus 39 ~q~~iL~~l-~~~~~t~~eLa~~l-------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 39 EQSHVLNML-SIEALTVGQITEKQ-------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHHH-------CSCSSHHHHHHHHHHHTTSEEC----------
T ss_pred HHHHHHHHH-HcCCcCHHHHHHHH-------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCC
Confidence 355666777 77888888776442 3667889999999999999998 666543
No 210
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=48.26 E-value=20 Score=25.58 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=27.3
Q ss_pred HHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 450 AILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
.|+.++- ..+|..||++.+|++...+..++....+
T Consensus 5 ~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 5 QVLKLID--EGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3444443 3578999999999999999999888763
No 211
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=48.09 E-value=15 Score=31.95 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=42.3
Q ss_pred hhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q psy16234 548 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSY 607 (609)
Q Consensus 548 ~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Y 607 (609)
+|.+++...+.++.++|...+.+.. ..++...|=+.|+.|.+.|.|.+-..+.+...|
T Consensus 23 ~Il~~l~~~~h~ta~ei~~~l~~~~--~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y 80 (145)
T 3eyy_A 23 LVLEAVDTLEHATPDDILGEVRKTA--SGINISTVYRTLELLEELGLVSHAHLGHGAPTY 80 (145)
T ss_dssp HHHHHHHHHSSBCHHHHHHHHHTTC--TTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhhC--CCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 4455555545899999988876543 357899999999999999999986543344444
No 212
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=47.95 E-value=14 Score=29.08 Aligned_cols=41 Identities=17% Similarity=0.392 Sum_probs=32.5
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
+|.-|..|+.++ ...+|..||++.+|++...++.++....+
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455666677666 35689999999999999999998887753
No 213
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=47.39 E-value=27 Score=30.79 Aligned_cols=46 Identities=9% Similarity=0.210 Sum_probs=36.3
Q ss_pred HHHHHHhh-cCC-CCCCHHHHHHHhC-CCHHHHHHHHHHHHhcCccccC
Q psy16234 448 QMAILLLF-EKN-DAMTCGDIQTVLS-LSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 448 Q~~iLllF-n~~-~~lt~~ei~~~t~-i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
...||..+ ... ...|+++|.+..+ ++...+.++|..|+..|++...
T Consensus 31 R~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~ 79 (151)
T 3u1d_A 31 RLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKI 79 (151)
T ss_dssp HHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEe
Confidence 44455444 332 3589999999999 9999999999999999999743
No 214
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=47.26 E-value=41 Score=24.57 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=30.6
Q ss_pred ecHHHHHHHHhhc---CCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy16234 444 MQTFQMAILLLFE---KNDAMTCGDIQTVLSLSQDQIGRHIASLV 485 (609)
Q Consensus 444 ~s~~Q~~iLllFn---~~~~lt~~ei~~~t~i~~~~l~~~L~~L~ 485 (609)
+|.-|-.|+.+.- +...+|+.||++.+|++...+...+..-.
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455555554432 34679999999999999999888777654
No 215
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=45.92 E-value=36 Score=28.95 Aligned_cols=40 Identities=10% Similarity=0.252 Sum_probs=35.0
Q ss_pred hcCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 455 FEKNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 455 Fn~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
|..++.+ |..+|++..|++...+.++|..|...|++...+
T Consensus 22 l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 22 LSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp SCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEET
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence 4446678 999999999999999999999999999987653
No 216
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=45.71 E-value=13 Score=38.18 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=43.6
Q ss_pred HHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC----CCCCCCCEEEEecCC
Q psy16234 451 ILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK----EELTEDTEIRLNLGY 509 (609)
Q Consensus 451 iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~----~~~~~~~~f~lN~~F 509 (609)
||.+.. +..+|-.||++.||++...+.+.+..|.+.|++...+ ..=.+...+.+|.++
T Consensus 25 il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~~ 86 (380)
T 2hoe_A 25 ILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPNC 86 (380)
T ss_dssp SHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGGG
T ss_pred HHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccCC
Confidence 343444 5789999999999999999999999999999987642 111234567777775
No 217
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=45.35 E-value=32 Score=29.07 Aligned_cols=40 Identities=10% Similarity=0.214 Sum_probs=35.1
Q ss_pred hcCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 455 FEKNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 455 Fn~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+..++.+ |..+|++..|++...+.++|..|...|++...+
T Consensus 29 ~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~ 69 (126)
T 3by6_A 29 LSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIP 69 (126)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 4446678 999999999999999999999999999997653
No 218
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=45.28 E-value=34 Score=28.79 Aligned_cols=38 Identities=11% Similarity=0.298 Sum_probs=33.7
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 457 KNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 457 ~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
.++.+ |..+|++..|++...+.++|..|...|+|...+
T Consensus 33 ~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 71 (125)
T 3neu_A 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEec
Confidence 45667 799999999999999999999999999997653
No 219
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=45.27 E-value=21 Score=35.79 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 459 DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 459 ~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
..+|++||++.+|+++..+.+.|..|+..|++... ++.|..+.
T Consensus 54 g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~~------~~~y~~t~ 96 (348)
T 3lst_A 54 GPRTPAELAAATGTDADALRRVLRLLAVRDVVRES------DGRFALTD 96 (348)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE------TTEEEECT
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEec------CCEEecCH
Confidence 57999999999999999999999999999999874 46777664
No 220
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=44.60 E-value=41 Score=26.13 Aligned_cols=41 Identities=7% Similarity=0.196 Sum_probs=29.5
Q ss_pred cHHHHHHHHh-h--cCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy16234 445 QTFQMAILLL-F--EKNDAMTCGDIQTVLSLSQDQIGRHIASLV 485 (609)
Q Consensus 445 s~~Q~~iLll-F--n~~~~lt~~ei~~~t~i~~~~l~~~L~~L~ 485 (609)
|.-|-.|+.+ | .+...+|+.||++.+|++...++..+..-.
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555533 3 334679999999999999998888776554
No 221
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=44.36 E-value=11 Score=32.06 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=22.5
Q ss_pred CCCChHHHHHHHHHhhhhccccccCC
Q psy16234 575 FAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 575 F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
...+...+.++|..|+++|||.|..+
T Consensus 61 l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 61 MTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 56889999999999999999999543
No 222
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=43.96 E-value=33 Score=27.30 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=33.3
Q ss_pred hhhhhhhhcc--ccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccc
Q psy16234 546 QAAIVRIMKS--RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVER 597 (609)
Q Consensus 546 ~A~IVRiMK~--~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r 597 (609)
|..|.+++.. .+.+...+|-.. ...+...+.++|..|.++|||+|
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~-------~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYK-------SNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEE
Confidence 4455555555 457777766633 45788999999999999999994
No 223
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=43.62 E-value=33 Score=29.53 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=43.7
Q ss_pred hhhhhhhcc-ccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q psy16234 547 AAIVRIMKS-RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSY 607 (609)
Q Consensus 547 A~IVRiMK~-~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Y 607 (609)
-+|.++|.. ...++.++|...+.+.. -.++...|=+.|+.|.+.|.|.+-..+.+.-.|
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~--~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y 76 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKG--DAVGLTTVYRTLQSLADAGEVDVLRTAEGESVY 76 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEE
Confidence 345555555 46799999998886653 357899999999999999999987653344444
No 224
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=43.11 E-value=22 Score=31.44 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=40.2
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
++..|.+.+.....++..+|-.. ...+.+.+.++|+.|.++|+|+|-
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~-------lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKK-------VGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCeeec
Confidence 56689999999999999877754 357899999999999999999974
No 225
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=43.02 E-value=22 Score=30.59 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=34.0
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccc
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVER 597 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r 597 (609)
+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||+|
T Consensus 43 ~~~iL~~l~~~~~~t~~eLa~~l-------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 43 QLAMINVIYSTPGISVADLTKRL-------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH-------CCCHHHHHHHHHHHHHCCCEEe
Confidence 44556666666667777666432 3678999999999999999999
No 226
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=42.96 E-value=32 Score=29.59 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=35.6
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
-+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 45 ~~~~iL~~l~~~~~~t~~ela~~-------l~is~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 45 TELYAFLYVALFGPKKMKEIAEF-------LSTTKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHH-------TTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 35556666666666777666533 4578899999999999999999853
No 227
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=42.81 E-value=36 Score=32.30 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=46.2
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
.+.-|..||-+-.....+|.++|+..+|.+....+..|..|++.|++-.+.
T Consensus 152 l~~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~GllwvD~ 202 (234)
T 3cuq_A 152 LNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDL 202 (234)
T ss_dssp CCHHHHHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEES
T ss_pred cchHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEeC
Confidence 568899998777778899999999999999999999999999999998764
No 228
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=42.72 E-value=32 Score=27.86 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=27.8
Q ss_pred cHHHHHHH-Hhhc--CCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy16234 445 QTFQMAIL-LLFE--KNDAMTCGDIQTVLSLSQDQIGRHIASL 484 (609)
Q Consensus 445 s~~Q~~iL-llFn--~~~~lt~~ei~~~t~i~~~~l~~~L~~L 484 (609)
|.-|-.|+ +.|- +...+|++||++.+|++...++..+..-
T Consensus 21 p~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rA 63 (99)
T 3t72_q 21 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 63 (99)
T ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44444444 4442 3467999999999999998887765443
No 229
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.72 E-value=39 Score=28.87 Aligned_cols=52 Identities=8% Similarity=0.251 Sum_probs=41.1
Q ss_pred hhhhhhhccc--cCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 547 AAIVRIMKSR--KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 547 A~IVRiMK~~--k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
.+|..++... +.++.++|...+.+... .++...|=+.|+.|.+.|.|.+...
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~~--~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAGE--DVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 4556666543 57999999988876542 5789999999999999999998764
No 230
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=42.64 E-value=25 Score=29.49 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=33.0
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|.
T Consensus 35 ~~~iL~~l~~~~~~~~~ela~~-------l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 35 QFGVIQVLAKSGKVSMSKLIEN-------MGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHH-------CSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHH-------HCCChhHHHHHHHHHHHCCCeeec
Confidence 4445555555666676665532 456778899999999999999985
No 231
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=42.48 E-value=31 Score=27.85 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=33.2
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
+|.-|..||.++- ..+|..||++.+|++...++..+..+.+
T Consensus 35 Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 35 LSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp CCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4666777776664 4689999999999999999998887763
No 232
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=42.43 E-value=15 Score=31.23 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=36.2
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
-+..|...+.....++..+|... ...+.+.+.+.|..|.++|||+|..+
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~-------l~~~~~tvs~~l~~L~~~Glv~r~~~ 85 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGER-------VFLDSGTLTPLLKKLEKKDYVVRTRE 85 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHHHHcCCcCHHHHHHH-------HCCChhhHHHHHHHHHHCCCeEecCC
Confidence 44556666666677777766643 24678999999999999999998653
No 233
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=42.17 E-value=23 Score=30.16 Aligned_cols=49 Identities=6% Similarity=0.110 Sum_probs=37.0
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
-+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 32 ~q~~iL~~l~~~~~~t~~eLa~~-------l~~~~~tvs~~l~~Le~~Glv~r~~~ 80 (145)
T 3g3z_A 32 NLFAVLYTLATEGSRTQKHIGEK-------WSLPKQTVSGVCKTLAGQGLIEWQEG 80 (145)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEeeccC
Confidence 45566666666677887776643 34678999999999999999999554
No 234
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=41.36 E-value=19 Score=36.54 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 458 NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 458 ~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
...+|++||++.+|+++..+.+.|..|+..|++...
T Consensus 69 ~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~ 104 (369)
T 3gwz_A 69 EGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDL 104 (369)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEe
Confidence 357999999999999999999999999999999875
No 235
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=41.06 E-value=18 Score=31.19 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=34.1
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
-+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 42 ~q~~iL~~l~~~~~~~~~eLa~~-------l~~~~~~vs~~l~~L~~~Glv~r~~~ 90 (149)
T 4hbl_A 42 SQYLVMLTLWEENPQTLNSIGRH-------LDLSSNTLTPMLKRLEQSGWVKRERQ 90 (149)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHH-------HTCCHHHHHHHHHHHHHHTSEEC---
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEeeCCC
Confidence 34555566655667776665533 34778999999999999999998653
No 236
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=40.59 E-value=18 Score=28.81 Aligned_cols=49 Identities=16% Similarity=0.345 Sum_probs=37.8
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
.+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|+|+|..+
T Consensus 21 ~~~~il~~l~~~~~~s~~ela~~l-------~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 21 SDVRIYSLLLERGGMRVSEIAREL-------DLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-------CCCHHHHHHHHHHHHHCCCEEEEee
Confidence 456666777666778887766442 4778999999999999999999653
No 237
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=40.16 E-value=29 Score=34.43 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=32.5
Q ss_pred cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccc
Q psy16234 456 EKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 456 n~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
...+.+|.+||++.+|++...+.|-|..|-+.|++.
T Consensus 17 ~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 17 YYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp HHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 344569999999999999999999999999999985
No 238
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=40.12 E-value=36 Score=29.60 Aligned_cols=57 Identities=7% Similarity=0.185 Sum_probs=47.6
Q ss_pred hhhhhhhhhhhhccccCCChHHHHHHHHHhhcC-CCCChHHHHHHHHHhhhhccccccC
Q psy16234 542 KLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 542 ~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
...++.+|..++.. +.+.-.+|.+++.+.... +.++...+-..+..|.++|||+|..
T Consensus 39 ~g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~ 96 (145)
T 1xma_A 39 RGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYY 96 (145)
T ss_dssp GGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEE
Confidence 34577888888854 678889999888777666 7899999999999999999999863
No 239
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=40.08 E-value=17 Score=30.97 Aligned_cols=47 Identities=11% Similarity=0.225 Sum_probs=34.0
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
+..|...+.....++..+|... ...+.+.+-+.|..|.++|||+|..
T Consensus 39 ~~~iL~~l~~~~~~t~~eLa~~-------l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 39 QWSVLEGIEANEPISQKEIALW-------TKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHHH-------HCCCHhhHHHHHHHHHHCCCeeccC
Confidence 4445555555566776666533 3467899999999999999999865
No 240
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=39.81 E-value=22 Score=31.07 Aligned_cols=50 Identities=10% Similarity=0.250 Sum_probs=37.3
Q ss_pred hhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 544 YLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 544 ~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
.-+..|...+.....++..+|-.. +..+.+.+-+.|..|.++|||+|..+
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~-------l~~~~~tvs~~l~~Le~~Glv~r~~~ 95 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAER-------SFIKPQSANKILQDLLANGWIEKAPD 95 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHH-------HTSCGGGHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCcCeEecCC
Confidence 345566677777777887766543 34678889999999999999998653
No 241
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=39.67 E-value=53 Score=24.34 Aligned_cols=40 Identities=8% Similarity=0.105 Sum_probs=27.9
Q ss_pred cHHHHHHH-Hhh--cCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy16234 445 QTFQMAIL-LLF--EKNDAMTCGDIQTVLSLSQDQIGRHIASL 484 (609)
Q Consensus 445 s~~Q~~iL-llF--n~~~~lt~~ei~~~t~i~~~~l~~~L~~L 484 (609)
|.-|-.|+ +.| .+...+|+.||++.+|++...+...+..-
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 44455555 333 23357999999999999998888766544
No 242
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.44 E-value=39 Score=29.24 Aligned_cols=60 Identities=7% Similarity=0.114 Sum_probs=44.1
Q ss_pred hhhhhhhhcc-ccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q psy16234 546 QAAIVRIMKS-RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSY 607 (609)
Q Consensus 546 ~A~IVRiMK~-~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Y 607 (609)
..+|..++.. .+.++.++|...+.+.. -.++.+.|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~--~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 84 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKF--PNMSVATVYNNLRVFRESGLVKELTYGDASSRF 84 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGC--TTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhC--CCCChhhHHHHHHHHHHCCCEEEEeeCCCceEE
Confidence 3456666654 46799999998775543 257899999999999999999987654344444
No 243
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=38.92 E-value=35 Score=29.36 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=36.5
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
-+..|...+.....++..+|... ...+.+.+-+.|..|.++|||+|..+
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~-------l~i~~~tvs~~l~~Le~~Glv~r~~~ 92 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKL-------SLMEQSRMTRIVDQMDARGLVTRVAD 92 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHHHHHHCCCcCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEeccC
Confidence 35566666666677777766533 35788999999999999999998643
No 244
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=38.69 E-value=26 Score=29.71 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=33.5
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+..|...+.... ++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 40 ~~~iL~~l~~~~-~t~~eLa~~-------l~~s~~tvs~~l~~L~~~Glv~r~~~ 86 (146)
T 3tgn_A 40 QEHILMLLSEES-LTNSELARR-------LNVSQAAVTKAIKSLVKEGMLETSKD 86 (146)
T ss_dssp HHHHHHHHTTCC-CCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHhCC-CCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCeEeccC
Confidence 344555556666 888777644 24678999999999999999998653
No 245
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=38.61 E-value=70 Score=21.98 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q psy16234 459 DAMTCGDIQTVLSLSQDQIGRHIA 482 (609)
Q Consensus 459 ~~lt~~ei~~~t~i~~~~l~~~L~ 482 (609)
..+|..+|++.+|++...+.+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 357999999999999999888763
No 246
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=38.55 E-value=20 Score=31.23 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=36.2
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
-+..|...+.....++..+|-.. +..+.+.+-+.|+.|.++|||+|..+
T Consensus 51 ~q~~vL~~l~~~~~~t~~eLa~~-------l~~~~~tvs~~l~~Le~~Glv~r~~~ 99 (159)
T 3s2w_A 51 GQFPFLMRLYREDGINQESLSDY-------LKIDKGTTARAIQKLVDEGYVFRQRD 99 (159)
T ss_dssp TTHHHHHHHHHSCSEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 34556666666677777766533 34778999999999999999998643
No 247
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.37 E-value=28 Score=29.40 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=36.5
Q ss_pred hhhhhhhhh-ccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIM-KSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiM-K~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
-+..|...+ .....++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 38 ~~~~iL~~l~~~~~~~t~~~la~~-------l~~s~~~vs~~l~~L~~~glv~r~~~ 87 (146)
T 2fbh_A 38 ARWLVLLHLARHRDSPTQRELAQS-------VGVEGPTLARLLDGLESQGLVRRLAV 87 (146)
T ss_dssp THHHHHHHHHHCSSCCBHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHH-------hCCChhhHHHHHHHHHHCCCeeecCC
Confidence 344566666 66677787766643 24678999999999999999999643
No 248
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=38.30 E-value=29 Score=29.42 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=33.6
Q ss_pred hhhhhhhhc-cccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 546 QAAIVRIMK-SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 546 ~A~IVRiMK-~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
+..|..++- ....++..+|... + ..+.+.+-+.+..|.++|||+|..
T Consensus 28 ~~~il~~L~~~~~~~t~~ela~~----l---~~~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 28 VGAVYAILYLSDKPLTISDIMEE----L---KISKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHH----H---TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH----H---CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 333444442 3466887766644 2 467899999999999999999973
No 249
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=38.04 E-value=35 Score=26.96 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=39.5
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYS 606 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~ 606 (609)
...|++.+.. +.++..+|...+ ..+.+.+.+.+..|.+.|+|++..+.+..|.
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l-------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y 77 (98)
T 3jth_A 25 RLQILCMLHN-QELSVGELCAKL-------QLSQSALSQHLAWLRRDGLVTTRKEAQTVYY 77 (98)
T ss_dssp HHHHHHHTTT-SCEEHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEECCTTCCEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 3456777766 778888776543 3678899999999999999998766555543
No 250
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=37.99 E-value=36 Score=26.61 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=36.8
Q ss_pred hhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCC
Q psy16234 547 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTD 603 (609)
Q Consensus 547 A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~ 603 (609)
..|..+++... ++..+|- +. +.++...+.++|..|.+.|+|.+.++.|-
T Consensus 20 ~~IL~lL~~~g-~sa~eLA----k~---LgiSk~aVr~~L~~Le~eG~I~~~~~~PP 68 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLT----RQ---LNMEKREVNKALYDLQRSAMVYSSDDIPP 68 (82)
T ss_dssp HHHHHHHSSST-EEHHHHH----HH---SSSCHHHHHHHHHHHHHHTSSEECSSSSC
T ss_pred HHHHHHHHHcC-CCHHHHH----HH---HCcCHHHHHHHHHHHHHCCCEEeCCCCCC
Confidence 34556777544 6666554 33 45889999999999999999999887654
No 251
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=37.82 E-value=33 Score=28.70 Aligned_cols=46 Identities=13% Similarity=0.308 Sum_probs=31.7
Q ss_pred hhhhhhhhccc--cCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 546 QAAIVRIMKSR--KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 546 ~A~IVRiMK~~--k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
+..|...+... ..++..+|.. . +..+.+.+-+.|+.|.++|||+|.
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~----~---l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIIN----H---LNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHH----H---SSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHHHHhccCCCcCHHHHHH----H---HCCCHHHHHHHHHHHHHCCCEEec
Confidence 33444444444 5566555443 2 457789999999999999999994
No 252
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=37.59 E-value=20 Score=30.44 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=33.1
Q ss_pred hhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 544 YLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 544 ~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
.-+..|...+-....++..+|-.. +..+.+.+-+.|..|.++|||+|..+
T Consensus 37 ~~~~~vL~~l~~~~~~t~~eLa~~-------l~~~~~tvs~~l~~L~~~Glv~r~~~ 86 (142)
T 3ech_A 37 PPDVHVLKLIDEQRGLNLQDLGRQ-------MCRDKALITRKIRELEGRNLVRRERN 86 (142)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHH-------HC---CHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHH-------hCCCHHHHHHHHHHHHHCCCEeeccC
Confidence 345566666666677777766543 24667889999999999999999654
No 253
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=37.44 E-value=28 Score=29.32 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=34.5
Q ss_pred hhhhhhhhcccc--CCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 546 QAAIVRIMKSRK--QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 546 ~A~IVRiMK~~k--~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
+..|...+.... .++..+|... +..+.+.+.+.|..|.++|||+|.+
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~-------l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESE-------FSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHH-------HCCCcchHHHHHHHHHHCCCEEeeC
Confidence 445555555555 6777766543 3467899999999999999999864
No 254
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=37.20 E-value=37 Score=28.84 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=37.9
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
++..|.+.+.....++..+|-..+ ..+...+.+++..|.+.|+|+|..
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l-------g~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL-------GISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-------TSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCEeccc
Confidence 355677778777778888777553 467899999999999999998753
No 255
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=37.03 E-value=26 Score=36.45 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=45.9
Q ss_pred HHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC-----CCCCCCCEEEEecCC
Q psy16234 450 AILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK-----EELTEDTEIRLNLGY 509 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~-----~~~~~~~~f~lN~~F 509 (609)
.||-+...+..+|..||++.||++...+.+.+..|.+.|++...+ ..=.+...+.+|.+.
T Consensus 43 ~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~~~~~~s~~GR~~~~l~~~~~~ 107 (429)
T 1z05_A 43 RVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETTVQEAISRGRPAVGLQTNNLG 107 (429)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECHHHHHHHTSCCEEEEECCTT
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccccCCCCCCCCCeEEEECCCC
Confidence 466666666789999999999999999999999999999987642 001233457777664
No 256
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=36.88 E-value=28 Score=28.34 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=40.3
Q ss_pred hhhhhhhhccccCC-ChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC-CCCcee
Q psy16234 546 QAAIVRIMKSRKQI-RHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN-STDEYS 606 (609)
Q Consensus 546 ~A~IVRiMK~~k~l-~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~-~~~~y~ 606 (609)
...|+..++....+ +..+|..+ |.++..-|.+++..|.+.|+|++.++ ....|+
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~~-------lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V 85 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIADR-------VGITRSVIVNALRKLESAGVIESRSLGMKGTYI 85 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEE
Confidence 55566777776666 77766543 67899999999999999999998872 245443
No 257
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=36.87 E-value=24 Score=31.72 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=34.7
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhCCC-HHHHHHHHH-HHHhcCccc
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVLSLS-QDQIGRHIA-SLVECKLLT 491 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t~i~-~~~l~~~L~-~L~~~~iL~ 491 (609)
+++++-+..++..+++++|++.++++ ..++..-+. ..+..||+.
T Consensus 97 lLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~ 142 (169)
T 3chm_A 97 QLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVR 142 (169)
T ss_dssp HHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeE
Confidence 44555444457899999999999999 888888777 777788874
No 258
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.25 E-value=43 Score=29.22 Aligned_cols=59 Identities=15% Similarity=0.301 Sum_probs=44.3
Q ss_pred hhhhhhhcc-ccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q psy16234 547 AAIVRIMKS-RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSY 607 (609)
Q Consensus 547 A~IVRiMK~-~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Y 607 (609)
.+|..++.. ...++.++|...+.+... .++...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~--~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 89 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDK--NTSISSVYRILNFLEKENFISVLETSKSGRRY 89 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHST--TCCHHHHHHHHHHHHHTTSEEEEEETTTEEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCC--CCCHhhHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 355666654 467999999988876642 57889999999999999999986654344444
No 259
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=36.18 E-value=31 Score=30.33 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=33.4
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
+..|...+.....++..+|... ...+.+.+-+.|..|.++|||+|..
T Consensus 47 ~~~iL~~L~~~~~~t~~eLa~~-------l~is~~tvs~~l~~Le~~GlV~r~~ 93 (168)
T 2nyx_A 47 QFRTLVILSNHGPINLATLATL-------LGVQPSATGRMVDRLVGAELIDRLP 93 (168)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHH-------HTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-------hCCCHHHHHHHHHHHHHCCCEEecc
Confidence 4445555555556666655433 3477899999999999999999943
No 260
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=36.11 E-value=38 Score=30.58 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+.+.|..|.+.|+|...
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 200 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 200 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeC
Confidence 4789999999999999999999999999999765
No 261
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=36.07 E-value=33 Score=29.84 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=40.2
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHh--------CCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVL--------SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t--------~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
...+.+||.+..+ ...+..+|++.+ +++...+.++|..|.+.|++...
T Consensus 40 g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~ 95 (145)
T 1xma_A 40 GYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSY 95 (145)
T ss_dssp GTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEE
Confidence 4688999988876 457888888877 69999999999999999999653
No 262
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=35.96 E-value=27 Score=30.41 Aligned_cols=48 Identities=10% Similarity=0.184 Sum_probs=34.1
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+..|...+.....++..+|... +..+.+.+-+.|+.|.++|||+|..+
T Consensus 55 q~~vL~~l~~~~~~t~~eLa~~-------l~~~~~~vs~~l~~Le~~Glv~r~~~ 102 (161)
T 3e6m_A 55 KLRLLSSLSAYGELTVGQLATL-------GVMEQSTTSRTVDQLVDEGLAARSIS 102 (161)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHHHHhCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 4445555555556666655432 45788999999999999999998654
No 263
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=35.80 E-value=27 Score=29.50 Aligned_cols=49 Identities=10% Similarity=0.229 Sum_probs=34.9
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
-+..|...+.....++..+|... +..+.+.+.+.|..|.++|||+|..+
T Consensus 38 ~~~~iL~~l~~~~~~~~~ela~~-------l~~~~~tvs~~l~~L~~~gli~r~~~ 86 (142)
T 2bv6_A 38 PQFLVLTILWDESPVNVKKVVTE-------LALDTGTVSPLLKRMEQVDLIKRERS 86 (142)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHH-------TTCCTTTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHH-------HCCChhhHHHHHHHHHHCCCEEeecC
Confidence 34555666665666666655533 34677889999999999999998654
No 264
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=35.58 E-value=38 Score=30.62 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=39.5
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhC-CCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLS-LSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~-i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++.=..||.++.+ ...|+.+|++.+| ++...+-.||..|.++||+...
T Consensus 22 ~P~Rl~il~~L~~-~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~ 70 (182)
T 4g6q_A 22 HPLRWRITQLLIG-RSLTTRELAELLPDVATTTLYRQVGILVKAGVLMVT 70 (182)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEE
Confidence 4455567777754 5789999999986 9999999999999999999643
No 265
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=35.49 E-value=28 Score=33.68 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=31.8
Q ss_pred HHHHHHHh-hcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 447 FQMAILLL-FEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 447 ~Q~~iLll-Fn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
+...|+-. .+....+|+++|+++|||..+++..+|+.| ++|..
T Consensus 194 W~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l---~~l~~ 237 (276)
T 3to7_A 194 WSDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL---NILRY 237 (276)
T ss_dssp HHHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHT---TCEEE
T ss_pred HHHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHC---CCEEE
Confidence 33344433 334568999999999999999999998885 56643
No 266
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=35.34 E-value=42 Score=30.18 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=31.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+-+.|..|.+.|+|...
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 4789999999999999999999999999998765
No 267
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=35.33 E-value=33 Score=27.85 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=36.0
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
....|.+.+ ..+.++..+|... +..+.+.+.+.+..|.+.|+|++..+
T Consensus 22 ~r~~IL~~L-~~~~~~~~ela~~-------l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 22 TRWEILTEL-GRADQSASSLATR-------LPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHH-------SSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHH-HcCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 344566666 4566777766543 45789999999999999999998654
No 268
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.25 E-value=37 Score=29.63 Aligned_cols=59 Identities=10% Similarity=0.263 Sum_probs=43.6
Q ss_pred hhhhhhhccc--cCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q psy16234 547 AAIVRIMKSR--KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSY 607 (609)
Q Consensus 547 A~IVRiMK~~--k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Y 607 (609)
.+|..++... +.++.++|...+.+... .++...|=+.|+.|.+.|.|.+...+.+...|
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~--~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 80 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGE--EIGLATVYRVLNQFDDAGIVTRHHFEGGKSVF 80 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHTTSEEEEECGGGCEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 4555666544 57999999988877542 57899999999999999999987543233444
No 269
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=35.24 E-value=35 Score=29.56 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=34.4
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 54 ~~~iL~~l~~~~~~t~~ela~~-------l~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 54 KMRALAILSAKDGLPIGTLGIF-------AVVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHH-------HCCChhHHHHHHHHHHHCCCEEecC
Confidence 4455555555666666665533 3477899999999999999999964
No 270
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=35.20 E-value=37 Score=29.33 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=38.0
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
++-.|.+.+.....++..+|-.. +..+.+.+.++|..|.++|+|.|.
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~-------lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADI-------LNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHH-------TTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34467788888888898877644 457899999999999999999863
No 271
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=35.02 E-value=59 Score=27.29 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCc
Q psy16234 447 FQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKL 489 (609)
Q Consensus 447 ~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~i 489 (609)
....++-+|.+ .+|+++|+..-|++..++..+|..++..|-
T Consensus 21 t~~~t~~l~~~--G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~ 61 (122)
T 3iuo_A 21 MKVSIVQQIDR--KVALDDIAVSHGLDFPELLSEVETIVYSGT 61 (122)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHc--CCCHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 44566777775 579999999999999999999999987763
No 272
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=34.99 E-value=31 Score=29.38 Aligned_cols=48 Identities=13% Similarity=0.284 Sum_probs=34.0
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+..|...+.....++..+|-.. +..+.+.+-+.|..|.++|||+|..+
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~-------l~~~~~tvs~~l~~Le~~Glv~r~~~ 89 (148)
T 3nrv_A 42 EWRIISVLSSASDCSVQKISDI-------LGLDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHcCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEeecC
Confidence 4455556666667777766533 34678999999999999999998743
No 273
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=34.99 E-value=70 Score=27.06 Aligned_cols=40 Identities=5% Similarity=0.276 Sum_probs=35.4
Q ss_pred hcCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 455 FEKNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 455 Fn~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
|..++.+ |..+|++.+|++...++++|..|...|++...+
T Consensus 32 l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 32 LQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 4456778 899999999999999999999999999997654
No 274
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=34.40 E-value=67 Score=25.05 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=28.2
Q ss_pred cHHHHHHHHh-hcCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy16234 445 QTFQMAILLL-FEKNDAMTCGDIQTVLSLSQDQIGRHIASLV 485 (609)
Q Consensus 445 s~~Q~~iLll-Fn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~ 485 (609)
+.-|-.|+.+ |- ..+|+.||++.+|++...++..+..-.
T Consensus 39 ~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 39 SAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp CHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4455555544 43 358999999999999988887766543
No 275
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=34.04 E-value=56 Score=30.82 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=36.9
Q ss_pred hhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 454 LFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 454 lFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
.+..++.++..+|++.+|++...++++|..|...|++...|
T Consensus 43 ~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 43 SLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp SSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 45567889999999999999999999999999999997654
No 276
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=34.00 E-value=63 Score=22.98 Aligned_cols=53 Identities=15% Similarity=0.350 Sum_probs=37.9
Q ss_pred hhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q psy16234 549 IVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSY 607 (609)
Q Consensus 549 IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Y 607 (609)
|..+++..+.++.++|...+.+.- ..++...|-+-|+ +-|.+ +...+.+.+.|
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~--~~vs~~Tv~R~L~---~lg~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDG--YKVTQATVSRDIK---ELHLV-KVPTNNGSYKY 62 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTT--CCCCHHHHHHHHH---HHTCE-EEEETTTEEEE
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhC--CCcCHHHHHHHHH---HcCCE-EEecCCCceee
Confidence 444567778899999998875542 5688899999998 55788 54444456666
No 277
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=33.81 E-value=32 Score=28.78 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=34.0
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
+..|...+.....++..+|. +. ...+.+.+-+.|..|.++|||+|..
T Consensus 36 ~~~iL~~l~~~~~~~~~~la----~~---l~~~~~tvs~~l~~L~~~gli~r~~ 82 (138)
T 1jgs_A 36 QFKVLCSIRCAACITPVELK----KV---LSVDLGALTRMLDRLVCKGWVERLP 82 (138)
T ss_dssp HHHHHHHHHHHSSBCHHHHH----HH---HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHH----HH---HCCChHHHHHHHHHHHHCCCEEecC
Confidence 44455555555667766665 23 3467899999999999999999853
No 278
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=33.67 E-value=32 Score=27.05 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=35.0
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
+-.|...+.....++..+|... +..+.+.+-+.|..|.+.|+|+|..
T Consensus 18 ~~~iL~~L~~~~~~~~~ela~~-------l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKV-------LDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhcCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4456666655567777766643 3578899999999999999999643
No 279
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.62 E-value=54 Score=29.00 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=44.9
Q ss_pred ecHHHHHHHHhhcC-CCCCCHHHHHHHh-------CCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 444 MQTFQMAILLLFEK-NDAMTCGDIQTVL-------SLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 444 ~s~~Q~~iLllFn~-~~~lt~~ei~~~t-------~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
+|.--.+||-.+.+ ...+|.+||.+.+ +++...+-|+|..|++.|++.+-.. -+....|.++.
T Consensus 31 ~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~-~~~~~~Y~~~~ 101 (162)
T 4ets_A 31 YTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISF-GSAGKKYELAN 101 (162)
T ss_dssp CCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC------CCEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEe-CCCceEEEeCC
Confidence 45566678766655 4689999998754 5889999999999999999976520 01124577774
No 280
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=33.61 E-value=44 Score=30.27 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=31.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+-+.|..|.+.|++...
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 196 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLG 196 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 4799999999999999999999999999999654
No 281
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=33.60 E-value=46 Score=30.22 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=31.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+-+.|..|.+.|++...
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 6899999999999999999999999999999654
No 282
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=33.37 E-value=83 Score=24.01 Aligned_cols=59 Identities=5% Similarity=0.082 Sum_probs=48.4
Q ss_pred hhhhhhhhhhhhhccccCCChHHHHHHHHHhhcC---CCC-ChHHHHHHHHHhhhhccccc-cC
Q psy16234 541 RKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS---FAP-SISMIKKCIESLIDKNYVER-TA 599 (609)
Q Consensus 541 R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~---F~~-~~~~ik~~Ie~LIekeyl~r-~~ 599 (609)
...+..+.|+-.+..-.+|+.+.+.....-...+ |.. +.++++.-++.+++.|-|+- ++
T Consensus 5 ~~~v~w~yI~GMLtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~~~g 68 (74)
T 1ldd_A 5 TLQRSLPFIEGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKYIAN 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEECCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEEeCC
Confidence 4567899999999999999999988776555443 443 77999999999999999995 54
No 283
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=33.29 E-value=39 Score=36.47 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=45.5
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhC-------CCHHHHHHHHHHHHhcCccccCC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLS-------LSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~-------i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+..|..||-+..+...+|..+|++.+| .+....+..|..+++.|+|..+.
T Consensus 493 ~~~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~rDd 549 (566)
T 1w7p_D 493 DVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDK 549 (566)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEEEEC
Confidence 467888988888889999999999999 99999999999999999998774
No 284
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=33.27 E-value=49 Score=27.50 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=31.3
Q ss_pred HhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccc
Q psy16234 453 LLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 453 llFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
.+..+ +.-|+..|.+.||+|...++..|..|-+.+|-.
T Consensus 27 ~lId~-~~~nvp~L~~~TGmPRRTiQd~I~aL~elgI~~ 64 (117)
T 3ke2_A 27 HLMDD-ARHNLLSLGKLTGMPRRTLQDAIASFADIGIEV 64 (117)
T ss_dssp HHHHH-SCCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEE
T ss_pred HHHhc-CCCCHHHHHHHHCCCHhHHHHHHHHhhhCCeEE
Confidence 34444 445999999999999999999999999887643
No 285
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=33.10 E-value=35 Score=29.32 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=37.0
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
+-.|.+.+.....++..+|-.. +..+.+.+.++|..|.++|+|+|.
T Consensus 7 d~~il~~L~~~~~~s~~ela~~-------lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELGRK-------IKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4467777777788888877644 347889999999999999999873
No 286
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=33.06 E-value=29 Score=29.14 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=34.6
Q ss_pred hhhhhhhhhcccc--CCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 545 LQAAIVRIMKSRK--QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 545 i~A~IVRiMK~~k--~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
-+..|...+-... .++..+|-.. +..+.+.+-+.|+.|.++|||+|..
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~-------l~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKA-------LQRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHH-------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 3455555555554 7777666533 3477899999999999999999864
No 287
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=32.95 E-value=54 Score=32.71 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=41.7
Q ss_pred HHHHHhh--cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 449 MAILLLF--EKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 449 ~~iLllF--n~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
-.||.++ ++...+|-++|++.+|++...+.+++..|-..|+..... ++.-|.+..
T Consensus 6 ~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~----~~~GY~L~~ 62 (323)
T 3rkx_A 6 QDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSV----NHKGHLLQQ 62 (323)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEE----TTTEEEEEE
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEe----CCCeEEEec
Confidence 3466555 456689999999999999999999999999999854321 134566654
No 288
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=32.75 E-value=40 Score=29.05 Aligned_cols=47 Identities=11% Similarity=0.202 Sum_probs=37.9
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
++..|.+.+.....++..+|-.. +..+.+.+.++|..|.++|+|+|-
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~-------lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIARE-------IRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHH-------HTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCcEEEE
Confidence 35567788887788888877644 247889999999999999999983
No 289
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=32.75 E-value=80 Score=22.70 Aligned_cols=40 Identities=23% Similarity=0.168 Sum_probs=28.9
Q ss_pred ecHHHHHHHHh-hcCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy16234 444 MQTFQMAILLL-FEKNDAMTCGDIQTVLSLSQDQIGRHIASLV 485 (609)
Q Consensus 444 ~s~~Q~~iLll-Fn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~ 485 (609)
+|.-|-.|+.+ |-+ .+|..+|++.+|++...+...+....
T Consensus 16 L~~~~r~il~l~~~~--g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 16 LTTDQREALLLTQLL--GLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SCHHHHHHHHHHHTS--CCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34555555544 433 48999999999999998887776654
No 290
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=32.72 E-value=68 Score=25.02 Aligned_cols=41 Identities=7% Similarity=0.168 Sum_probs=33.3
Q ss_pred HHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcc
Q psy16234 450 AILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLL 490 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL 490 (609)
.+.....-...++++.|++.++++.+.+...|..|+..|-|
T Consensus 20 nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l 60 (84)
T 1ufm_A 20 NLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRM 60 (84)
T ss_dssp HHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcE
Confidence 33334445688999999999999999999999999976544
No 291
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=32.55 E-value=52 Score=30.79 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=31.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+.+.|..|.+.|+|...
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~ 210 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKK 210 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeC
Confidence 5799999999999999999999999999999765
No 292
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=32.49 E-value=46 Score=31.05 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+-+.|..|.+.|+|...
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEc
Confidence 5789999999999999999999999999999765
No 293
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=32.41 E-value=46 Score=30.34 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=37.9
Q ss_pred hhhhhhhhhhhhhcccc-CCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCC
Q psy16234 541 RKLYLQAAIVRIMKSRK-QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANST 602 (609)
Q Consensus 541 R~~~i~A~IVRiMK~~k-~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~ 602 (609)
|+..|=.+|...++.++ ..+..+|... + ..+.+-+.+.|..|-++|||.|+++.+
T Consensus 6 ~q~~il~~I~~~~~~~g~~~s~~eia~~----l---gl~~~tv~~~l~~Le~~G~i~~~~~~~ 61 (196)
T 3k2z_A 6 RQRKVLLFIEEFIEKNGYPPSVREIARR----F---RITPRGALLHLIALEKKGYIERKNGKP 61 (196)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHH----H---TSCHHHHHHHHHHHHHTTSEECC---T
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHH----c---CCCcHHHHHHHHHHHHCCCEEecCCCc
Confidence 55566667777776654 6777766543 3 345567999999999999999987653
No 294
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=32.33 E-value=47 Score=29.82 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=31.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+.+.|..|.+.|+|...
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 179 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIRSG 179 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 3788999999999999999999999999998654
No 295
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=32.30 E-value=32 Score=28.84 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=31.8
Q ss_pred hhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 547 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 547 A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 41 ~~iL~~l~~~~~~t~~ela~~-------l~~~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 41 WAALVRLGETGPCPQNQLGRL-------TAMDAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp HHHHHHHHHHSSBCHHHHHHH-------TTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 334444444445555544422 5578899999999999999999964
No 296
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=32.29 E-value=46 Score=30.47 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=31.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 461 MTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 461 lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|-++|++.+|++.+.+-+.|..|.+.|+|...
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 220 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEC
Confidence 789999999999999999999999999999765
No 297
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=32.26 E-value=52 Score=27.71 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=34.4
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+..|...+. .+.++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 39 ~~~iL~~l~-~~~~~~~ela~~-------l~~s~~tvs~~l~~Le~~glv~r~~~ 85 (146)
T 2gxg_A 39 DFLVLRATS-DGPKTMAYLANR-------YFVTQSAITASVDKLEEMGLVVRVRD 85 (146)
T ss_dssp HHHHHHHHT-TSCBCHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHh-cCCcCHHHHHHH-------hCCCchhHHHHHHHHHHCCCEEeecC
Confidence 444555555 666777665533 45788999999999999999998643
No 298
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=31.91 E-value=32 Score=29.09 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=34.2
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||.|..
T Consensus 31 ~~~iL~~l~~~~~~t~~~la~~-------l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 31 QYLYLVRVCENPGIIQEKIAEL-------IKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCcCcCHHHHHHH-------HCCCHhHHHHHHHHHHHCCCEEeec
Confidence 4445555555666776655543 3467899999999999999999854
No 299
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=31.89 E-value=1.4e+02 Score=21.41 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 458 NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 458 ~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
...+|..|++...|.|-+..+..|..|...|-|.+. ...|.+-.
T Consensus 16 ~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKR------sSRYrlkp 59 (68)
T 3i71_A 16 RQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKR------SSRYRLKP 59 (68)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE------CCEEEECC
T ss_pred hccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhh------ccccccCc
Confidence 457999999999999999999999999999988776 35665543
No 300
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=31.88 E-value=49 Score=30.37 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=31.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|+..+|++.+.+-+.|..|.+.|+|...
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEec
Confidence 5799999999999999999999999999999764
No 301
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=31.78 E-value=46 Score=28.15 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=33.8
Q ss_pred hhhhhhhcc-ccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 547 AAIVRIMKS-RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 547 A~IVRiMK~-~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
..|...+.. ...++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~-------l~i~~~~vs~~l~~Le~~glv~r~~~ 85 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAA-------ERMRSSNLAALLRELERGGLIVRHAD 85 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHHcCCCCCHHHHHHH-------hCCChhhHHHHHHHHHHCCCEeeCCC
Confidence 344455554 566777666533 45788999999999999999998643
No 302
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=31.72 E-value=49 Score=30.43 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=31.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+.+.|..|.+.|+|...
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeC
Confidence 5799999999999999999999999999998754
No 303
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.62 E-value=75 Score=26.77 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=42.7
Q ss_pred hhhhhhc-cccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q psy16234 548 AIVRIMK-SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSY 607 (609)
Q Consensus 548 ~IVRiMK-~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Y 607 (609)
+|..++. +.+.++.++|...+.+.. -.++.+.|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~--~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y 73 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRG--ENIGLTTVYRTLQSMASSGLVDTLHTDTGESVY 73 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTT--CCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC--CCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEE
Confidence 3444443 456899999998887653 357899999999999999999987654344444
No 304
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=31.58 E-value=34 Score=29.00 Aligned_cols=46 Identities=4% Similarity=0.130 Sum_probs=31.6
Q ss_pred hhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 548 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 548 ~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
.|...+.....++..+|.. . +..+.+.+-+.|..|.++|||+|..+
T Consensus 44 ~iL~~l~~~~~~~~~~la~----~---l~~~~~tvs~~l~~L~~~glv~r~~~ 89 (147)
T 1z91_A 44 LALLLLWEHETLTVKKMGE----Q---LYLDSGTLTPMLKRMEQQGLITRKRS 89 (147)
T ss_dssp HHHHHHHHHSEEEHHHHHH----T---TTCCHHHHHHHHHHHHHHTSEECCBC
T ss_pred HHHHHHHHCCCCCHHHHHH----H---HCCCcCcHHHHHHHHHHCCCEEeccC
Confidence 3444444444555554442 2 56789999999999999999999654
No 305
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=31.51 E-value=51 Score=30.18 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+.+.|..|.+.|+|...
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 210 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRLE 210 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEec
Confidence 4799999999999999999999999999998754
No 306
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=31.48 E-value=10 Score=38.48 Aligned_cols=49 Identities=8% Similarity=0.105 Sum_probs=0.0
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
++.-|..||......+.+|..+|++.+|++...+.+.|..|.+.|++..
T Consensus 18 ~~~r~~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~ 66 (345)
T 2o0m_A 18 VLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIEP 66 (345)
T ss_dssp -------------------------------------------------
T ss_pred hhHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4456777888888888999999999999999999999999999999863
No 307
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=31.41 E-value=28 Score=29.12 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=35.5
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
+..|...+.....++..+|... ...+.+.+.+.|..|.++|||+|..
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~-------l~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATF-------FHVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEeec
Confidence 4555666666677777766644 2467899999999999999999954
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.38 E-value=66 Score=28.45 Aligned_cols=53 Identities=9% Similarity=0.208 Sum_probs=41.5
Q ss_pred hhhhhhhcc-ccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 547 AAIVRIMKS-RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 547 A~IVRiMK~-~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
-+|.+++.. .+.++.++|...+.+......++...|=+.|+.|.+.|.|.+-.
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 355666655 47899999999988762013578899999999999999999874
No 309
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=31.38 E-value=72 Score=25.72 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=34.1
Q ss_pred hhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 548 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 548 ~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
.|.+.+. ...++..+|... +. ..+.+.+-+.|..|.++|+|+|..+
T Consensus 18 ~IL~~L~-~~~~~~~eLa~~----l~--~is~~tls~~L~~Le~~GlI~r~~~ 63 (107)
T 2hzt_A 18 VILXHLT-HGKKRTSELKRL----MP--NITQKMLTQQLRELEADGVINRIVY 63 (107)
T ss_dssp HHHHHHT-TCCBCHHHHHHH----CT--TSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHH-hCCCCHHHHHHH----hc--CCCHHHHHHHHHHHHHCCCEEEeec
Confidence 4555554 567888777644 21 4788999999999999999998643
No 310
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=31.37 E-value=36 Score=28.57 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=36.6
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
.+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 32 ~~~~iL~~l~~~~~~~~~ela~~-------l~is~~~vs~~l~~L~~~gli~~~~~ 80 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQER-------LQIDRAAVTRHLKLLEESGYIIRKRN 80 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 34556666666667777766643 24678999999999999999998754
No 311
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=31.24 E-value=37 Score=29.80 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=36.9
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
+-.|.+.+.....++..+|-.. +..+.+.+.++|..|.++|+|+|.
T Consensus 12 ~~~il~~L~~~~~~s~~ela~~-------lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 12 DIKILQVLQENGRLTNVELSER-------VALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHH-------HTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEeee
Confidence 4457777877788888877654 346789999999999999999973
No 312
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=30.87 E-value=41 Score=31.86 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=46.4
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
..+.-|..||-+-.....+|.++++..+|.+....+..|..|++.|++-.+.
T Consensus 164 el~~D~~~vLe~a~~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD~ 215 (233)
T 1u5t_A 164 ELTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDY 215 (233)
T ss_dssp CCCTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEEC
T ss_pred ccchHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 3567899999777778899999999999999999999999999999998764
No 313
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.58 E-value=29 Score=29.17 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=35.9
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
-+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 37 ~~~~iL~~l~~~~~~t~~ela~~-------l~~s~~~vs~~l~~Le~~glv~r~~~ 85 (142)
T 2fbi_A 37 QQWRVIRILRQQGEMESYQLANQ-------ACILRPSMTGVLARLERDGIVRRWKA 85 (142)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH-------HCCCHhHHHHHHHHHHHCCCEEeecC
Confidence 34555666666666777665532 45788999999999999999998643
No 314
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=30.31 E-value=41 Score=30.74 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+-+.|..|.+.|+|...
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 211 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD 211 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEec
Confidence 5788999999999999999999999999999765
No 315
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=30.11 E-value=41 Score=29.10 Aligned_cols=48 Identities=8% Similarity=0.222 Sum_probs=34.5
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
-+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~-------l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDR-------TAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEeeec
Confidence 34556666666667777666533 3467899999999999999999954
No 316
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=30.08 E-value=40 Score=29.18 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=37.5
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccc
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVER 597 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r 597 (609)
++..|.+.+.....++..+|-.. +..+.+.+.++|..|.++|+|.|
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~-------lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQ-------FGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHH-------HTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHcCCcce
Confidence 34567788888888898877754 24788999999999999999997
No 317
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=29.95 E-value=46 Score=29.78 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=31.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+.+.|..|.+.|++...
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 172 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIATA 172 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 4789999999999999999999999999998654
No 318
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=29.89 E-value=30 Score=29.89 Aligned_cols=48 Identities=8% Similarity=0.126 Sum_probs=32.8
Q ss_pred hhhhhhhhh-ccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 545 LQAAIVRIM-KSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 545 i~A~IVRiM-K~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
-+..|...+ .....++..+|... ...+.+.+-+.|..|.++|||+|..
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~-------l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGA-------LKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHH-------CSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHH-------HCCChhhHHHHHHHHHHCCCEEeec
Confidence 344555555 44555666655432 3467788899999999999999964
No 319
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=29.86 E-value=39 Score=28.84 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=34.2
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~-------l~~~~~~vs~~l~~Le~~Glv~r~~~ 89 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAA-------LQMKRQYISRILQEVQRAGLIERRTN 89 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHhCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCeeecCC
Confidence 4445555555556666655533 34678999999999999999999643
No 320
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=29.78 E-value=55 Score=32.87 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=43.4
Q ss_pred cHHHHHHHH-----hhcCCCCCCHHHHHHHh--CCCHHHHHHHHHHHHhcCccccCC
Q psy16234 445 QTFQMAILL-----LFEKNDAMTCGDIQTVL--SLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 445 s~~Q~~iLl-----lFn~~~~lt~~ei~~~t--~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+-=|-.||. ..+.+.+++..+|++.. |++...+++-|..|-+.|+|.+..
T Consensus 16 ~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~H 72 (338)
T 1stz_A 16 NDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPH 72 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEcc
Confidence 445666776 67888999999999999 999999999999999999998753
No 321
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=29.73 E-value=61 Score=26.36 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=38.5
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHH----hCCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTV----LSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~----t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
...+++||.+..+. ..+.-+|.+. ++++...+.++|..|.+.|++...
T Consensus 8 g~l~~~IL~~L~~~-~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~ 59 (108)
T 3l7w_A 8 LLIEYLILAIVSKH-DSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTY 59 (108)
T ss_dssp HHHHHHHHHHHHHS-CEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEE
Confidence 45788999888774 4566666665 589999999999999999999653
No 322
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=29.72 E-value=25 Score=27.74 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=33.8
Q ss_pred hhcccc-CCChHHHHHHHHHhhcCCCCChHH-HHHHHHHhhhhccccccCCCCCc
Q psy16234 552 IMKSRK-QIRHNALIQEVLSQSKSFAPSISM-IKKCIESLIDKNYVERTANSTDE 604 (609)
Q Consensus 552 iMK~~k-~l~~~~L~~~v~~~l~~F~~~~~~-ik~~Ie~LIekeyl~r~~~~~~~ 604 (609)
.+.... .++..+|... +..+.+. +-+.|+.|.++|||++++.|+..
T Consensus 23 ~l~~~~~~~t~~eLa~~-------l~is~~t~vs~~l~~Le~~Glv~~~~~drR~ 70 (95)
T 2pg4_A 23 EFEKKGYEPSLAEIVKA-------SGVSEKTFFMGLKDRLIRAGLVKEETLSYRV 70 (95)
T ss_dssp HHHHTTCCCCHHHHHHH-------HCCCHHHHHTTHHHHHHHTTSEEEEEEETTE
T ss_pred HHHhcCCCCCHHHHHHH-------HCCCchHHHHHHHHHHHHCCCeecCCCCCCe
Confidence 334444 6888776643 3467888 99999999999999987776443
No 323
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=29.66 E-value=59 Score=30.73 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=31.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+-+.|..|.+.|+|...
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~ 250 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 250 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEc
Confidence 4789999999999999999999999999999765
No 324
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=29.52 E-value=44 Score=29.88 Aligned_cols=47 Identities=13% Similarity=0.238 Sum_probs=38.5
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
++-.|.+.+.....++..+|-..+ ..+.+.+.++|..|.++|+|+|-
T Consensus 28 ~d~~IL~~L~~~~~~s~~eLA~~l-------glS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQNDGKAPLREISKIT-------GLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCeEee
Confidence 455788888888889998777543 47889999999999999999873
No 325
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=29.52 E-value=40 Score=28.67 Aligned_cols=46 Identities=9% Similarity=0.118 Sum_probs=31.9
Q ss_pred hhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 547 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 547 A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 45 ~~iL~~l~~~~~~t~~ela~~-------l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 45 FVALQWLLEEGDLTVGELSNK-------MYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp HHHHHHHHHHCSBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHH-------HCCCchhHHHHHHHHHHCCCeeecC
Confidence 334444444455666555432 3578899999999999999999854
No 326
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=29.51 E-value=55 Score=30.21 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=31.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+-+.|..|.+.|++...
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~ 219 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIELH 219 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEE
T ss_pred cCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEec
Confidence 4789999999999999999999999999998754
No 327
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=29.28 E-value=38 Score=32.84 Aligned_cols=32 Identities=9% Similarity=0.333 Sum_probs=23.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccc
Q psy16234 457 KNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 457 ~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
....+|+++|++.|||..+++..+|+.| ++|.
T Consensus 211 ~~~~isi~~is~~T~i~~~DIi~tL~~l---~~l~ 242 (284)
T 2ozu_A 211 NDKQISIKKLSKLTGICPQDITSTLHHL---RMLD 242 (284)
T ss_dssp -----CHHHHHHHHCBCHHHHHHHHHHT---TCC-
T ss_pred CCCcEeHHHHHHHhCCCHHHHHHHHHHC---CCEE
Confidence 3468999999999999999999999986 4553
No 328
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=29.02 E-value=54 Score=31.20 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=40.2
Q ss_pred hhhhhhhhhhccccCC-ChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q psy16234 544 YLQAAIVRIMKSRKQI-RHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYS 606 (609)
Q Consensus 544 ~i~A~IVRiMK~~k~l-~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~ 606 (609)
.|...|.. ++....| +-.+|..+ |.++...+.+++..|.+.|+|.| .+ +.+|+
T Consensus 22 ~l~~~I~~-~~~g~~lPse~~La~~-------~~vSr~tvr~Al~~L~~~G~i~~-~g-~Gt~V 75 (248)
T 3f8m_A 22 ELDRMLDG-MRIGDPFPAEREIAEQ-------FEVARETVRQALRELLIDGRVER-RG-RTTVV 75 (248)
T ss_dssp HHHHHHHH-CCTTCBCCCHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEE-ET-TEEEE
T ss_pred HHHHHHhC-CCCCCcCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEe-CC-CEEEE
Confidence 34455555 7877777 56666543 88999999999999999999999 76 35543
No 329
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=28.95 E-value=36 Score=29.20 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=32.5
Q ss_pred hhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 547 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 547 A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
..|...+.....++..+|... +..+.+.+.+.|..|.++|||+|..
T Consensus 50 ~~iL~~l~~~~~~t~~ela~~-------l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 50 YLVMLVLWETDERSVSEIGER-------LYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp HHHHHHHHHSCSEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhCCCcCHHHHHHH-------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 344444544555666555432 3478899999999999999999964
No 330
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=28.86 E-value=29 Score=29.67 Aligned_cols=49 Identities=22% Similarity=0.292 Sum_probs=29.2
Q ss_pred hhhhhhhhhccc--cCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSR--KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~--k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
-+..|...+... ..++..+|... +..+.+.+-+.|+.|.++|||+|..+
T Consensus 42 ~q~~vL~~l~~~~~~~~t~~eLa~~-------l~~~~~~vs~~l~~L~~~Glv~r~~~ 92 (148)
T 3jw4_A 42 QQGRMIGYIYENQESGIIQKDLAQF-------FGRRGASITSMLQGLEKKGYIERRIP 92 (148)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHC-------------CHHHHHHHHHHTTSBCCC--
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-------HCCChhHHHHHHHHHHHCCCEEeeCC
Confidence 344555555554 56666655532 34677888999999999999998753
No 331
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=28.75 E-value=47 Score=32.21 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=25.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
.+|+++|+++|||..+++..+|+.| |++..
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l---~~l~~ 241 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYL---NLINY 241 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHT---TCCCB
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHC---CcEEE
Confidence 7999999999999999999988885 55543
No 332
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=28.53 E-value=46 Score=26.36 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=33.1
Q ss_pred hhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 551 RIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 551 RiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
.+......++..+|... +..+.+.+-+.+..|.++|||+|..+
T Consensus 29 ~l~~~~~~~t~~ela~~-------l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 29 KMVEIEKPITSEELADI-------FKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHHCSCEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHcCCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 34444677888776643 35788999999999999999999754
No 333
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=28.40 E-value=44 Score=29.81 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=37.9
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
++-.|.+.+.....++..+|-.. ...+.+.+.++|+.|.++|+|+|-
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~-------lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQ-------LKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHH-------HTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEee
Confidence 34467888888888998877754 247889999999999999999863
No 334
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=28.39 E-value=60 Score=29.09 Aligned_cols=55 Identities=9% Similarity=0.157 Sum_probs=45.1
Q ss_pred hhhhhhhhhhccccCCChHHHHHHHHHhhcC-CCCChHHHHHHHHHhhhhccccccC
Q psy16234 544 YLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 544 ~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
.++-+|..++.. +.++-.+|...+...... +.++.+.|-..+..|.+.|+|++..
T Consensus 2 ~l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 2 SLPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp CHHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred chHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 356677777764 788899999888666555 6899999999999999999999764
No 335
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=28.35 E-value=37 Score=29.83 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=33.0
Q ss_pred hhhhhhhhcc-ccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 546 QAAIVRIMKS-RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 546 ~A~IVRiMK~-~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+..|...+.. ...++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~-------l~i~~~tvs~~l~~Le~~GlV~r~~~ 103 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKA-------IGIEQPSLVRTLDQLEDKGLISRQTC 103 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHH-------HTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH-------HCCCHhhHHHHHHHHHHCCCEEeeCC
Confidence 4445555544 455666665533 34778999999999999999999653
No 336
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=28.31 E-value=45 Score=28.74 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=37.4
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
.+..|.+.+.....++..+|-..+ ..+.+.+.++|..|.++|+|.|.
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~l-------g~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRA-------GLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 355677778777888888776542 46789999999999999999864
No 337
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=28.30 E-value=52 Score=30.10 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=31.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+.+.|..|.+.|+|...
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~ 196 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQ 196 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEEC
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEc
Confidence 3789999999999999999999999999998765
No 338
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=28.24 E-value=56 Score=28.26 Aligned_cols=51 Identities=12% Similarity=0.202 Sum_probs=37.2
Q ss_pred hhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC--CCCceee
Q psy16234 548 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN--STDEYSY 607 (609)
Q Consensus 548 ~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~--~~~~y~Y 607 (609)
.|++.+. ...++..+|...+ ..+.+.+-++|..|.++|+|+|... |+ ...|
T Consensus 28 ~IL~~L~-~g~~~~~eLa~~l-------gis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y 80 (146)
T 2f2e_A 28 LIVRDAF-EGLTRFGEFQKSL-------GLAKNILAARLRNLVEHGVMVAVPAESGS-HQEY 80 (146)
T ss_dssp HHHHHHH-TTCCSHHHHHHHH-------CCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHh-------CCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEE
Confidence 3556554 5678888776442 3678999999999999999998654 44 4444
No 339
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=28.22 E-value=34 Score=30.73 Aligned_cols=91 Identities=15% Similarity=0.073 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHhhcCCCcceeeecccceE-EEEEEEeCccEEEEecH----HHHHHHHhhcCC-CC----CCHH-H
Q psy16234 397 PQELEKCIHMFEKFYHGQFNGRKLSWLHNISQV-ELKLSYLKRPYFVTMQT----FQMAILLLFEKN-DA----MTCG-D 465 (609)
Q Consensus 397 P~~l~~~~~~F~~~Y~~k~~~RkL~W~~~l~~~-~l~~~~~~~~~~l~~s~----~Q~~iLllFn~~-~~----lt~~-e 465 (609)
|..+..+.+.|+. ||.+ ---.+|++|.+.+ .+. .+..|+-+.++. .. +|.. +
T Consensus 62 p~Dl~~A~~~l~~----------------Lg~~~~~l~~~~sg~~V~-~~~~~d~~~~~il~~~~~~~g~d~~~vt~~~~ 124 (169)
T 1u5t_B 62 PMEMREACERFEH----------------LGLNELKLVKVNKRILCV-TSEKFDVVKEKLVDLIGDNPGSDLLRLTQILS 124 (169)
T ss_dssp HHHHHHHHTTTGG----------------GTCCSCEEEEETTTEEEE-ESSCSHHHHHHHHHHHHHSCSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----------------cCCCeEEEEEECCeeEEE-eCCChhHHHHHHHHHHHhcCCCCcccccHHHH
Q ss_pred -HHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEe
Q psy16234 466 -IQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLN 506 (609)
Q Consensus 466 -i~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN 506 (609)
+++..|.+....+..|..+.+.|++..+.+.-. ..|..|
T Consensus 125 ~la~~~~ws~~~a~e~L~~~e~~G~l~~D~~~~G--~~y~~N 164 (169)
T 1u5t_B 125 SNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSG--IYYYKN 164 (169)
T ss_dssp TSCTTCCCCHHHHHHHHHHHHHHTSEEEEECSSC--EEEEEC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCEEEECCCCc--ceEEee
No 340
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=28.17 E-value=48 Score=28.64 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=37.1
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
+-.|.+.+.....++..+|-.. +..+.+.+.++|..|.++|+|+|-
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~-------lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKI-------TGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHH-------HCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4467777777788888877654 347889999999999999999874
No 341
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=27.47 E-value=44 Score=30.76 Aligned_cols=46 Identities=11% Similarity=0.056 Sum_probs=31.6
Q ss_pred hhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 548 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 548 ~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
.|...+.....++..+|... +..+.+.+.+.|..|.++|||+|..+
T Consensus 52 ~iL~~L~~~~~~t~~eLa~~-------l~i~~stvs~~l~~Le~~GlV~r~~~ 97 (207)
T 2fxa_A 52 HILWIAYQLNGASISEIAKF-------GVMHVSTAFNFSKKLEERGYLRFSKR 97 (207)
T ss_dssp HHHHHHHHHTSEEHHHHHHH-------TTCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHCCCcCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 34444444445555444422 45789999999999999999999654
No 342
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=27.38 E-value=37 Score=32.90 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=26.1
Q ss_pred HHHHHhhc-CCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccc
Q psy16234 449 MAILLLFE-KNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 449 ~~iLllFn-~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
..|+-.+. ..+.+|+++|+++|||..+++..+|+.| |++.
T Consensus 196 ~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l---~~l~ 236 (278)
T 2pq8_A 196 WVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL---NMVK 236 (278)
T ss_dssp HHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHT---TCEE
T ss_pred HHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHC---CCEE
Confidence 34444333 3458999999999999999999988885 5554
No 343
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=27.35 E-value=48 Score=24.43 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=34.4
Q ss_pred hhhhhhccc-cCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 548 AIVRIMKSR-KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 548 ~IVRiMK~~-k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
.|..+++.. ..++..+|-.. +..+.+.+-+.|..|.+.|||...
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~-------lglsr~tv~~~l~~L~~~G~I~~~ 58 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKK-------CQVPKKTLNQVLYRLKKEDRVSSP 58 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHH-------HCSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCcEecC
Confidence 467777765 56888766533 457899999999999999999873
No 344
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=27.10 E-value=45 Score=28.42 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=32.1
Q ss_pred hhhhhhhhcc-ccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 546 QAAIVRIMKS-RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 546 ~A~IVRiMK~-~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+..|...+.. ...++..+|... ...+.+.+-+.|..|.++|||+|..+
T Consensus 41 q~~vL~~l~~~~~~~t~~eLa~~-------l~i~~~tvs~~l~~Le~~Glv~r~~~ 89 (150)
T 3fm5_A 41 SYSVLVLACEQAEGVNQRGVAAT-------MGLDPSQIVGLVDELEERGLVVRTLD 89 (150)
T ss_dssp HHHHHHHHHHSTTCCCSHHHHHH-------HTCCHHHHHHHHHHHHTTTSEEC---
T ss_pred HHHHHHHHHhCCCCcCHHHHHHH-------HCCCHhHHHHHHHHHHHCCCEEeeCC
Confidence 4445555533 345677766543 24678999999999999999999543
No 345
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=27.02 E-value=59 Score=27.01 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=35.9
Q ss_pred hhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q psy16234 548 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 605 (609)
Q Consensus 548 ~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y 605 (609)
.|.+.+...+.++..+|... + ..+.+.+-+.|..|.+.|+|.+..+.+..|
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~----l---~is~stvs~~L~~L~~~Glv~~~~~gr~~~ 96 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANI----L---GVTIANASHHLRTLYKQGVVNFRKEGKLAL 96 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHH----H---TCCHHHHHHHHHHHHHTTSEEEC----CCE
T ss_pred HHHHHHHHCCCcCHHHHHHH----H---CcCHHHHHHHHHHHHHCCCeEEEEECCEEE
Confidence 57777766677787766644 3 467899999999999999999876544444
No 346
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=26.59 E-value=35 Score=28.80 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=35.9
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
-+..|...+...+.++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 34 ~~~~iL~~l~~~~~~~~~~la~~-------l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 34 AQFDILQKIYFEGPKRPGELSVL-------LGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH-------HCCCchhHHHHHHHHHHCCCeeecC
Confidence 34555566655667777766643 2467899999999999999999964
No 347
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=26.45 E-value=60 Score=26.84 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=38.7
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCC--CCChHHHHHHHHHhhhhccccccC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSF--APSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F--~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
++-.|...++....++..+|-. . + ..+.+.+.++|..|.+.|+|++.+
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~----~---l~~giS~~aVs~rL~~Le~~GLV~~~~ 63 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELED----R---DEIRISKSSVSRRLKKLADHDLLQPLA 63 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHT----S---TTCCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHHHcCCCCHHHHHH----H---HhcCCCHHHHHHHHHHHHHCCCEEecC
Confidence 3556778888878888876653 2 5 688999999999999999999864
No 348
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=26.35 E-value=38 Score=28.15 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=40.2
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHh------C--CCH-HHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVL------S--LSQ-DQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t------~--i~~-~~l~~~L~~L~~~~iL~~~ 493 (609)
+..+..||.+..+ ...+..+|++.+ + ++. ..+.++|..|.+.|++...
T Consensus 12 ~~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~ 68 (118)
T 2esh_A 12 WWLASTILLLVAE-KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTE 68 (118)
T ss_dssp HHHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEE
T ss_pred chHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEE
Confidence 4678899988866 568888998888 3 888 9999999999999999653
No 349
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=26.13 E-value=75 Score=26.23 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=45.9
Q ss_pred hhhhhhhhhhhhhccccCCChHHHHHHHHHhhcC-CCCChHHHHHHHHHhhhhcccccc
Q psy16234 541 RKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 541 R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
++-.++.+|..++. .+.+.--+|.+.+.+ .. +.++.+.+=..+..|-++|+|++.
T Consensus 6 ~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~--~~~~~is~gtlY~~L~rLe~~GlI~~~ 61 (115)
T 4esb_A 6 LKGVLEGCILYIIS-QEEVYGYELSTKLNK--HGFTFVSEGSIYPLLLRMQKEKLIEGT 61 (115)
T ss_dssp TTTTHHHHHHHHHH-HSCEEHHHHHHHHHH--TTCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hhCHHHHHHHHHHH-cCCCCHHHHHHHHHH--cCCCCCCcChHHHHHHHHHHCCCeEEE
Confidence 34567888888887 577888899988876 45 689999999999999999999985
No 350
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=25.29 E-value=87 Score=25.26 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=37.2
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 605 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y 605 (609)
....|++.+.. +.++..+|... +..+.+.+.+.|..|.+.|+|++..+.+..|
T Consensus 26 ~r~~IL~~L~~-~~~s~~eLa~~-------lgis~stvs~~L~~L~~~GlV~~~~~gr~~~ 78 (108)
T 2kko_A 26 RRLQILDLLAQ-GERAVEAIATA-------TGMNLTTASANLQALKSGGLVEARREGTRQY 78 (108)
T ss_dssp TTHHHHHHHTT-CCEEHHHHHHH-------HTCCHHHHHHHHHHHHHHTSEEEEEETTEEE
T ss_pred HHHHHHHHHHc-CCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 34456666763 66777766543 3467899999999999999998765433333
No 351
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=25.27 E-value=73 Score=27.15 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=29.4
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLV 485 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~ 485 (609)
+|.-|-.|+.++ -..+|+.||++.+|++...++..+..-.
T Consensus 110 L~~~~r~v~~~~--~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 110 FSKFEKEVLTYL--IRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355566666643 3578999999999999998887766543
No 352
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=25.23 E-value=60 Score=29.56 Aligned_cols=34 Identities=9% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+-+.|..|.+.|+|...
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERV 200 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEES
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEc
Confidence 5889999999999999999999999999998763
No 353
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=25.03 E-value=1.2e+02 Score=26.51 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=45.9
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeec
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 608 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yi 608 (609)
-++.|.+++++++..+.++|.....+. +|.++...|.+-|..| |.++.-.++ +.|.|.
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~--G~~VtqaTisRDL~eL---~~vKv~~~~-g~~~Y~ 63 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREA--GFNVTQATVSRDIKEM---QLVKVPMAN-GRYKYS 63 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHT--TCCCCHHHHHHHHHHT---TCEEEECSS-SCEEEE
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHc--CCCcCHHHHHHHHHHc---CCeEEECCC-CCEEEE
Confidence 367899999999999999999776554 4999999999988876 666654443 778885
No 354
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=25.00 E-value=39 Score=34.50 Aligned_cols=38 Identities=5% Similarity=0.009 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 457 KNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 457 ~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
++...+.+++++.+|++...+.+.|..|++.|+|.+.+
T Consensus 308 ~~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~ 345 (373)
T 2qc0_A 308 EQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp HCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC-
T ss_pred hCCcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEec
Confidence 45678999999999999999999999999999998653
No 355
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=24.80 E-value=37 Score=23.93 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=28.1
Q ss_pred cHHHHHHHHHhhhcccccH--HHHHHHHHHHHHHHHH
Q psy16234 157 RRHDLANMYPLLRSVREGI--NILIDAVRDHICKQGL 191 (609)
Q Consensus 157 ~~~~L~~ly~L~~~~~~~l--~~l~~~~~~~i~~~g~ 191 (609)
+.+|--.+|..+.++|.|- ..++++++.||.+.|.
T Consensus 32 kkedypqifdflenvprgtktahirealrryieeige 68 (70)
T 2q2k_A 32 KKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGE 68 (70)
T ss_dssp ETTTSHHHHHHHTTSCTTCHHHHHHHHHHHHHHHCC-
T ss_pred hhhhchHHHHHHHcCCCccchHHHHHHHHHHHHHhcc
Confidence 3567788999999998764 4788999999988775
No 356
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=24.52 E-value=41 Score=28.75 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=33.6
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~-------l~~s~~tvs~~l~~Le~~glv~r~~~ 86 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAER-------MEVKPSAVTLMADRLEQKNLIARTHN 86 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHH-------HTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEeecCC
Confidence 3445555555556666655433 34678999999999999999998643
No 357
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=24.34 E-value=96 Score=29.16 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=33.6
Q ss_pred hcCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 455 FEKNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 455 Fn~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+..++.+ |..+|++..|++...++++|..|...|+|...+
T Consensus 27 ~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 67 (236)
T 3edp_A 27 YKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKN 67 (236)
T ss_dssp SCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 3446778 999999999999999999999999999997654
No 358
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.29 E-value=76 Score=30.17 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=34.0
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLV 485 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~ 485 (609)
.+|.-|-.|+.++ ...+|.+||++.+|++...++.++....
T Consensus 197 ~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~ 237 (258)
T 3clo_A 197 ILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNIL 237 (258)
T ss_dssp SSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4677777788776 3679999999999999999998887765
No 359
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=24.14 E-value=96 Score=25.64 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=46.7
Q ss_pred HhhhhhhhhhhhhhccccCCChHHHHHHHHHhhcC-CCCChHHHHHHHHHhhhhcccccc
Q psy16234 540 DRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 540 ~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
-++-.++.+|..++. .+.+.--+|.+.+.+ .. +.++.+.+=..+..|-++|+|++.
T Consensus 9 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~--~g~~~is~gtlY~~L~rLe~~GlI~~~ 65 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQ-RKETYGYEITKILND--QGFTEIVEGTVYTILLRLEKNQWVIAE 65 (116)
T ss_dssp HHTTHHHHHHHHHHH-HSCBCHHHHHHHHHT--TSCSSCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhhhHHHHHHHHHh-cCCCCHHHHHHHHHH--cCCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 355678999999997 466777799988766 44 689999999999999999999985
No 360
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=24.13 E-value=45 Score=34.07 Aligned_cols=44 Identities=5% Similarity=0.022 Sum_probs=36.5
Q ss_pred HHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 451 ILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 451 iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
++..+.++..+|.+++++.+|++.....+.|..|++.|+|.+.+
T Consensus 302 ll~~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~ 345 (373)
T 3eqx_A 302 LVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp HHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC-
T ss_pred HHHHHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 34344455778999999999999999999999999999998653
No 361
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=24.08 E-value=69 Score=21.21 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=22.6
Q ss_pred HHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHH
Q psy16234 451 ILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIA 482 (609)
Q Consensus 451 iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~ 482 (609)
|+.++.+ .+|..+|++.+|++...+.+.+.
T Consensus 14 i~~l~~~--g~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 14 ISRLLEK--GHPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp HHHHHHT--TCCHHHHHHTTSCCHHHHHHHSC
T ss_pred HHHHHHc--CCCHHHHHHHHCCCHHHHHHHHH
Confidence 3444443 38999999999999988877654
No 362
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=24.08 E-value=48 Score=33.14 Aligned_cols=45 Identities=11% Similarity=0.244 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHhCCC---HHHHHHHHHHHHhcCccccCCCCCCCCCEEEEe
Q psy16234 459 DAMTCGDIQTVLSLS---QDQIGRHIASLVECKLLTSNKEELTEDTEIRLN 506 (609)
Q Consensus 459 ~~lt~~ei~~~t~i~---~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN 506 (609)
..+|++||++.+|++ ...+.+.|..|+..|++...+ .+++.|..+
T Consensus 50 ~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~---~~~~~y~~t 97 (352)
T 1fp2_A 50 KPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIIT---KEEESYALT 97 (352)
T ss_dssp SCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEE---SSSEEEEEC
T ss_pred CCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEec---CCCCeEeCC
Confidence 379999999999995 788999999999999997651 013567665
No 363
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=23.84 E-value=89 Score=29.25 Aligned_cols=38 Identities=8% Similarity=0.204 Sum_probs=33.3
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLV 485 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~ 485 (609)
...+|.++-++...|.++|+..+|++.+.+...|..|-
T Consensus 24 ~~~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 24 LVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 34567777789999999999999999999999999984
No 364
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=23.82 E-value=66 Score=30.05 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=37.7
Q ss_pred HHHHHHHhhcC------CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 447 FQMAILLLFEK------NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 447 ~Q~~iLllFn~------~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
-|+.+|..... .+.+|+.++++.++++...+.++|..|.+.|++.+.
T Consensus 8 ~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~ 60 (230)
T 3cta_A 8 QYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRT 60 (230)
T ss_dssp HHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 45555555432 345899999999999999999999999999988764
No 365
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=23.78 E-value=58 Score=29.30 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=33.2
Q ss_pred hhhhhhhhcc--ccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 546 QAAIVRIMKS--RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 546 ~A~IVRiMK~--~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+..|...+.. ...++..+|... ...+.+.+-+.|..|.++|||+|..+
T Consensus 43 q~~vL~~L~~~~~~~~t~~eLa~~-------l~is~~tvs~~l~~Le~~GlV~r~~~ 92 (189)
T 3nqo_A 43 QYMTILSILHLPEEETTLNNIARK-------MGTSKQNINRLVANLEKNGYVDVIPS 92 (189)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHH-------HTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHhccCCCcCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEeccC
Confidence 3444444443 456776665533 34678999999999999999998543
No 366
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=23.67 E-value=99 Score=29.06 Aligned_cols=41 Identities=10% Similarity=0.197 Sum_probs=36.0
Q ss_pred hhcCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 454 LFEKNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 454 lFn~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
.+..++.+ |..+|++..|++...++++|..|...|+|...+
T Consensus 22 ~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~ 63 (239)
T 3bwg_A 22 QLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVR 63 (239)
T ss_dssp TCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeC
Confidence 35556788 999999999999999999999999999997654
No 367
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=23.64 E-value=75 Score=30.06 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=35.2
Q ss_pred hcCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 455 FEKNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 455 Fn~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+..++.+ |..+|++..|++...++++|..|...|+|...+
T Consensus 28 ~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 68 (243)
T 2wv0_A 28 LQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLK 68 (243)
T ss_dssp SCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 4456778 999999999999999999999999999997654
No 368
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=23.51 E-value=56 Score=27.65 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=34.5
Q ss_pred hhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 548 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 548 ~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+|.++......++..+|-.. +..+.+.+.+.|..|.++|||.|..+
T Consensus 12 ~i~~l~~~~~~~~~~ela~~-------l~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 12 QIYMLIEEKGYARVSDIAEA-------LAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp HHHHHHHHHSSCCHHHHHHH-------HTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHhhcCCCCHHHHHHH-------hCCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 34455556667777766543 35778999999999999999999753
No 369
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=23.48 E-value=1.1e+02 Score=31.79 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=67.6
Q ss_pred CCcceEEEeeecCCCC--CCCC--CCCCccCchHHHHHHHHHHHHHhhcCCCcceeee-------cccceEEEEEEEeCc
Q psy16234 370 LGIHFSINILQAGSWP--LGPT--VISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWL-------HNISQVELKLSYLKR 438 (609)
Q Consensus 370 ~~~~f~~~VLt~~~WP--~~~~--~~~~~~lP~~l~~~~~~F~~~Y~~k~~~RkL~W~-------~~l~~~~l~~~~~~~ 438 (609)
.++++-+.-+....|| .+.+ +..++.=|..|+...+.+.+.-..--++| .|. ++||+=-+=-...+
T Consensus 305 pG~dIPv~~~~r~~~~~peYHTs~Dtld~ISpe~L~~s~~iv~~~i~~Le~n~--~~~~~~~~~EPqLgkrgLy~~~~~- 381 (435)
T 3k9t_A 305 PGINLSVGSLMRSCYGFDGYHTSADNLCYMNKDGLADSYKTYLEVIYTIENNR--TYLNLNPKCEPQLGKRGIYRMIGG- 381 (435)
T ss_dssp TTTCCCEEEEESSCTTCTTTTBTTSSGGGCCHHHHHHHHHHHHHHHHHHHHCC--EEEESCCSSCCCTTSCC--------
T ss_pred CCCCCCEEEEecCCCCCcccCCCcCChhhCCHHHHHHHHHHHHHHHHHhhccc--eeeccCcccCCccccccCcccccc-
Confidence 4666666666667787 2222 23567778888888777776654322222 222 23332221100000
Q ss_pred cEEEEecHHHHHHHHhhc-CCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccc
Q psy16234 439 PYFVTMQTFQMAILLLFE-KNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 439 ~~~l~~s~~Q~~iLllFn-~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
... --.-|+.+|-..| ....-|+-||++..|+|-..+......|..+|||.
T Consensus 382 ~~~--~~~~~~~~l~~L~~~dG~~slldia~~~~~~~~~~~~~~~~l~~~~l~~ 433 (435)
T 3k9t_A 382 GSD--YPFDEFAMFWVLNMSDGKNSLLDIAYKSGMEFRRIKYAADALYRVELLK 433 (435)
T ss_dssp --------CHHHHHHHHHHCEEEEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEE
T ss_pred ccc--hHHHHHHHHHHHHhccCCccHHHHHHHhCcCHHHHHHHHHHHHHccCcc
Confidence 000 0012445443333 22467999999999999999999999999999985
No 370
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=23.44 E-value=73 Score=25.63 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=34.3
Q ss_pred hhhhhhccccCCChHHHHHHHHHhhcCCC-CChHHHHHHHHHhhhhccccccCC
Q psy16234 548 AIVRIMKSRKQIRHNALIQEVLSQSKSFA-PSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 548 ~IVRiMK~~k~l~~~~L~~~v~~~l~~F~-~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
.|.+.+. .+.++..+|... .. .+.+.+-+.+..|.++|+|+|..+
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~-------l~gis~~~ls~~L~~Le~~GlV~r~~~ 74 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRA-------IPGISEKMLIDELKFLCGKGLIKKKQY 74 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHH-------STTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHH-hCCcCHHHHHHH-------cccCCHHHHHHHHHHHHHCCCEEEeec
Confidence 4555565 567888777643 33 788999999999999999998653
No 371
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=23.38 E-value=67 Score=29.76 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=31.2
Q ss_pred CCCHHHHHHHhCCCH-HHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQ-DQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~-~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++. +.+.+.|..|.+.|+|...
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~ 203 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK 203 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEec
Confidence 589999999999999 8999999999999998654
No 372
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=23.07 E-value=1.3e+02 Score=24.63 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=29.0
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLV 485 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~ 485 (609)
+|.-|-.|+.+.- ...+|..||++.+|++...+...+....
T Consensus 26 L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 26 LTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRTG 66 (113)
T ss_dssp SCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455555654431 1358999999999999988887776654
No 373
>1eze_A Cholesteryl ester transferase inhibitor protein; amphipathic helix; NMR {Synthetic} SCOP: j.39.1.1 PDB: 1opp_A
Probab=23.07 E-value=31 Score=22.70 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.6
Q ss_pred HHHHHHhCchhHHHHHHHHHHHHHhH
Q psy16234 327 NKLKQACGYEFTNKFHRMLTDIKISG 352 (609)
Q Consensus 327 ~~Lk~~~G~~~t~kl~~M~~Di~~S~ 352 (609)
++++ ++|.....|...+|+||..|.
T Consensus 9 dkvk-e~g~tl~eK~k~~~~~i~~Se 33 (38)
T 1eze_A 9 DKLK-EFGNTLEDKAWEVINRIKQSE 33 (38)
T ss_dssp HHHH-HHTTHHHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHHHHHHHHHHHHHHhhccc
Confidence 6776 699999999999999999874
No 374
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=22.83 E-value=99 Score=24.85 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=35.9
Q ss_pred cCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 557 KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 557 k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
..+.-.+++.++.+... |.++.+.+=..+..|.++|||++..+
T Consensus 23 ~~~~g~~i~~ei~~~~~-~~is~GtlYp~L~rLe~~GlI~~~~~ 65 (99)
T 2co5_A 23 SRLEKKRLRSEILKRFD-IDISDGVLYPLIDSLIDDKILREEEA 65 (99)
T ss_dssp TEEEGGGHHHHHHHHHC-CBCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCcHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHCCCEEEeeC
Confidence 44566788888877764 78999999999999999999998753
No 375
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=22.66 E-value=88 Score=29.16 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=30.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+.+..+|++.++++...+.+.|..|.+.|++.+.
T Consensus 24 ~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~ 57 (226)
T 2qq9_A 24 TPLRARIAERLEQSGPTVSQTVARMERDGLVVVA 57 (226)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3455999999999999999999999999999875
No 376
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=22.53 E-value=1.2e+02 Score=24.95 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=39.3
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHh------CCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVL------SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t------~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
..+.++||.+..+ ...+--+|.+.+ +++...+..+|..|.+.|++...
T Consensus 10 g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~ 63 (117)
T 4esf_A 10 GSLEGCVLEIISR-RETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIE 63 (117)
T ss_dssp HHHHHHHHHHHHH-SCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 3467888888876 456788888887 79999999999999999998653
No 377
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=22.48 E-value=1.3e+02 Score=24.76 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHh--------CCCHHHHHHHHHHHHhcCccccC
Q psy16234 446 TFQMAILLLFEKNDAMTCGDIQTVL--------SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 446 ~~Q~~iLllFn~~~~lt~~ei~~~t--------~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
..+++||.+..+. ..+--+|.+.+ +++...+.++|..|.+.|++...
T Consensus 12 ~l~~~IL~~L~~~-~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 12 QTNVILLNVLKQG-DNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHC-CBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 4788888888764 45667777665 79999999999999999998653
No 378
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=22.34 E-value=98 Score=28.45 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=35.8
Q ss_pred hcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 455 FEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 455 Fn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+..++.++..+|++.+|++-..++.+|..|...|++...|
T Consensus 30 l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~ 69 (218)
T 3sxy_A 30 LKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVP 69 (218)
T ss_dssp SCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEET
T ss_pred CCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 4456789999999999999999999999999999997654
No 379
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=22.31 E-value=92 Score=24.60 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=36.4
Q ss_pred hhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q psy16234 547 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 605 (609)
Q Consensus 547 A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y 605 (609)
..|++.+.. +.++..+|...+ ..+.+.+-+.+..|.+.|+|.+..+.+..|
T Consensus 26 ~~Il~~L~~-~~~~~~ela~~l-------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~ 76 (102)
T 3pqk_A 26 LMLVCTLVE-GEFSVGELEQQI-------GIGQPTLSQQLGVLRESGIVETRRNIKQIF 76 (102)
T ss_dssp HHHHHHHHT-CCBCHHHHHHHH-------TCCTTHHHHHHHHHHHTTSEEEECSSSCCE
T ss_pred HHHHHHHHh-CCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 356677744 668888776553 255678999999999999998766544444
No 380
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=22.26 E-value=1.1e+02 Score=23.09 Aligned_cols=57 Identities=7% Similarity=0.100 Sum_probs=44.2
Q ss_pred hhHhHHHHHHHHhccCCCCChhhHhhhhhhhhheeec-cCCh-HHHHHHHHHHHHHHhcCCCC
Q psy16234 256 PEYLAKYCDMLLKKSSKGLSESEMDDKLSQSITVFKY-IDDK-DVFHKFYAKMLAKRLIHQQS 316 (609)
Q Consensus 256 ~e~La~y~D~~lkk~~k~~~~~e~~~~l~~i~~lf~~-l~~K-D~F~~~Y~~~La~RLL~~~s 316 (609)
-+++.+.++.++ ++ .+++++...|+++...+.. +.+. +.|...|...+..-|+.+.+
T Consensus 7 C~~~v~~le~~l-~n---~Te~~I~~~L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~~L~~~~~ 65 (74)
T 1l9l_A 7 CLTIVQKLKKMV-DK---PTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGET 65 (74)
T ss_dssp HHHHHHHHHHHC-SS---CCHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHh-cc---cCHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356777788887 43 3678999999999888865 4443 78999999999999988654
No 381
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=22.21 E-value=1.6e+02 Score=24.26 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=47.5
Q ss_pred HhhhhhhhhhhhhhccccCCChHHHHHHHHHhhcC-CCCChHHHHHHHHHhhhhccccccC
Q psy16234 540 DRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 540 ~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
-++-.++.+|..++. .+.+.--+|.+.+.+. + +.++.+.+=..+..|-++|+|++..
T Consensus 7 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~~--g~~~is~gtlY~~L~rLe~~GlI~~~~ 64 (117)
T 4esf_A 7 MLKGSLEGCVLEIIS-RRETYGYEITRHLNDL--GFTEVVEGTVYTILVRLEKKKLVNIEK 64 (117)
T ss_dssp HHHHHHHHHHHHHHH-HSCBCHHHHHHHHHHH--TCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHChHHHHHHHHHH-cCCCCHHHHHHHHHHc--CCCCCCccHHHHHHHHHHHCCCEEEEe
Confidence 355678899999987 4778888999888664 5 5799999999999999999999863
No 382
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.16 E-value=98 Score=25.48 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=29.5
Q ss_pred ecHHHHHHHHh-hcCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy16234 444 MQTFQMAILLL-FEKNDAMTCGDIQTVLSLSQDQIGRHIASLV 485 (609)
Q Consensus 444 ~s~~Q~~iLll-Fn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~ 485 (609)
+|+-|..|+.+ +-+ .+|..||++.+|++...+...+..-.
T Consensus 23 L~~~~r~vl~l~y~~--g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 23 LTDKQMNYIELYYAD--DYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp SCHHHHHHHHHHHHT--CCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45566666654 333 47999999999999998888776654
No 383
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=22.12 E-value=35 Score=29.62 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=22.2
Q ss_pred CCCChHHHHHHHHHhhhhccccccCC
Q psy16234 575 FAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 575 F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+..+.+.+-+.|+.|.++|||+|..+
T Consensus 56 l~~~~~tvs~~v~~Le~~GlV~R~~~ 81 (151)
T 4aik_A 56 IGIEQPSLVRTLDQLEEKGLITRHTS 81 (151)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HCcCHHHHHHHHHHHHhCCCeEeecC
Confidence 35788999999999999999997544
No 384
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=21.96 E-value=49 Score=33.39 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=30.5
Q ss_pred CCHHHHHHHhCC------CHHHHHHHHHHHHhcCccccC
Q psy16234 461 MTCGDIQTVLSL------SQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 461 lt~~ei~~~t~i------~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|++||++.+|+ +...+.+.|..|+..|+|...
T Consensus 63 ~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 63 MSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp BCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 999999999999 678999999999999999764
No 385
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=21.91 E-value=75 Score=25.77 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=43.4
Q ss_pred hhhhhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 541 RKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 541 R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
++-.++.+|..++.. +.+.-.+|.+++.+. +.++.+.+-..+..|.++|||++..
T Consensus 6 ~~g~l~~~IL~~L~~-~~~~gyel~~~l~~~---~~i~~~tly~~L~~Le~~GlI~~~~ 60 (108)
T 3l7w_A 6 SALLIEYLILAIVSK-HDSYGYDISQTIKLI---ASIKESTLYPILKKLEKAGYLSTYT 60 (108)
T ss_dssp CHHHHHHHHHHHHHH-SCEEHHHHHHHHTTT---CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHc-CCCcHHHHHHHHHHH---hCCCcChHHHHHHHHHHCCCeEEEe
Confidence 345678888888875 567777777665442 6799999999999999999999864
No 386
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=21.88 E-value=1.2e+02 Score=28.15 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=35.8
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
.+|.-|..||.++- ..+|..||++.+|++...++.++....+
T Consensus 173 ~Lt~~e~~vl~~~~--~g~s~~eIa~~l~is~~tV~~~~~~~~~ 214 (234)
T 1l3l_A 173 WLDPKEATYLRWIA--VGKTMEEIADVEGVKYNSVRVKLREAMK 214 (234)
T ss_dssp CCCHHHHHHHHHHT--TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46788888887763 5789999999999999999999988764
No 387
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=21.82 E-value=1.3e+02 Score=22.73 Aligned_cols=58 Identities=7% Similarity=0.095 Sum_probs=45.3
Q ss_pred hhHhHHHHHHHHhccCCCCChhhHhhhhhhhhheeeccCC-hHHHHHHHHHHHHHHhcCCCC
Q psy16234 256 PEYLAKYCDMLLKKSSKGLSESEMDDKLSQSITVFKYIDD-KDVFHKFYAKMLAKRLIHQQS 316 (609)
Q Consensus 256 ~e~La~y~D~~lkk~~k~~~~~e~~~~l~~i~~lf~~l~~-KD~F~~~Y~~~La~RLL~~~s 316 (609)
-+++.++++.++.++ .+++++...|+.+...+..+.. =+.|...|-..+.+-|+.+.+
T Consensus 7 C~~iv~~ve~~l~~~---~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~~~iI~~l~~~~~ 65 (78)
T 1nkl_A 7 CRKIIQKLEDMVGPQ---PNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKK 65 (78)
T ss_dssp HHHHHHHHHHHHCSS---CCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 467888899988754 3678899999998887765443 378999999999998887654
No 388
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=21.81 E-value=84 Score=25.26 Aligned_cols=45 Identities=11% Similarity=0.318 Sum_probs=33.2
Q ss_pred hhhhhhhc-cccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 547 AAIVRIMK-SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 547 A~IVRiMK-~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
..|+..+. ....++-.+|... +..+.+.+.+.+..|.+.|+|.+.
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~-------lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQ-------LNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHT-------TTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 35555553 3335777655532 678999999999999999999987
No 389
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=21.77 E-value=55 Score=32.77 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHhcCccccC
Q psy16234 459 DAMTCGDIQTVLSL---SQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 459 ~~lt~~ei~~~t~i---~~~~l~~~L~~L~~~~iL~~~ 493 (609)
..+|++||++.+|+ +...+.+.|..|+..|++...
T Consensus 44 ~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 44 KPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp SCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 37999999999999 588999999999999999764
No 390
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=21.59 E-value=86 Score=26.03 Aligned_cols=104 Identities=11% Similarity=0.097 Sum_probs=71.7
Q ss_pred HHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecCCCCCcceEEeccccccCChhHH
Q psy16234 451 ILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEI 530 (609)
Q Consensus 451 iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~F~~~~~ki~i~~~~~~~~~~e~ 530 (609)
|+-.|.. +..++.++++.+|++...+...|..|+..|.|..-+ .+.|.-.
T Consensus 12 i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~-----~~~~~~~------------------------ 61 (121)
T 2pjp_A 12 AEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIV-----KDRYYRN------------------------ 61 (121)
T ss_dssp HGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE-----TTEEEEH------------------------
T ss_pred HHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec-----CCceECH------------------------
Confidence 4444543 567999999999999999999999999988775431 1222110
Q ss_pred hhhhhhHHHHhhhhhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 531 ERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 531 ~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+.-..+-..|..+++.+..++..++-..+ ..+..-...-+|.|=..|+-.|.++
T Consensus 62 ---------~~~~~~~~~l~~~~~~~~~it~ae~Rd~l-------g~sRK~ai~lLE~~Dr~g~TrR~gd 115 (121)
T 2pjp_A 62 ---------DRIVEFANMIRDLDQECGSTCAADFRDRL-------GVGRKLAIQILEYFDRIGFTRRRGN 115 (121)
T ss_dssp ---------HHHHHHHHHHHHHHHHHSSEEHHHHHHHH-------TSCHHHHHHHHHHHHHHTSEEEETT
T ss_pred ---------HHHHHHHHHHHHHHHHCCCccHHHHHHHH-------CCcHHHHHHHHHHHhhcCCeEeeCC
Confidence 11122344556667778888887666443 3566766788899988999888764
No 391
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=21.49 E-value=76 Score=29.58 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=35.5
Q ss_pred hcCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 455 FEKNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 455 Fn~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+..++.+ |-.+|++..|++-..++.+|..|...|++...+
T Consensus 25 l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 25 FPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp SCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEec
Confidence 3446788 899999999999999999999999999997664
No 392
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=21.49 E-value=1.1e+02 Score=28.11 Aligned_cols=52 Identities=10% Similarity=0.199 Sum_probs=38.3
Q ss_pred EEecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 442 VTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 442 l~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
++.+.-++.-.+.-- ...++..+|++.+|+++..+...+..|.+.|++...+
T Consensus 13 ls~s~EdYLk~I~~L-~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~ 64 (200)
T 2p8t_A 13 PEYTVEDVLAVIFLL-KEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ 64 (200)
T ss_dssp -CCCHHHHHHHHHHT-TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCCHHHHHHHHHHH-cCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 445555554322211 3569999999999999999999999999999987653
No 393
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=21.38 E-value=97 Score=24.89 Aligned_cols=55 Identities=7% Similarity=0.344 Sum_probs=35.7
Q ss_pred HhhH-HHHHHHHHHHHhcCCCChhhhhhhhhhhhhhcc-cCCcccHHHHHHHHHhhhhh
Q psy16234 11 NKTW-GSLQETIQGVITLGNVRRATWNDRFSDIYSLCV-AYPEPLADRLYQETKLFLDQ 67 (609)
Q Consensus 11 e~~W-~~l~~~i~~i~~~~~~~~~~~~~~y~~vy~~c~-~~~~~~~~~Ly~~~~~~l~~ 67 (609)
|.|| +.++.....++... ++..+.+++..|---+. ..|..+..+|..+++.||.+
T Consensus 35 EcGW~Devr~~~r~~i~~~--~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~ 91 (96)
T 3mhs_B 35 QEGWVDKVKDLTKSEMNIN--ESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEE 91 (96)
T ss_dssp HTTHHHHHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHHHHHHhc--CCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 5567 45555555555432 23346666666655543 46888999999999999864
No 394
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=21.19 E-value=20 Score=34.88 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred ecHHHHHHHHhhcCC---CCCCHHHHHHHh-CCCHHHHHHHHHHHHhcCccc
Q psy16234 444 MQTFQMAILLLFEKN---DAMTCGDIQTVL-SLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~---~~lt~~ei~~~t-~i~~~~l~~~L~~L~~~~iL~ 491 (609)
++..|-.||-.+.+. +.+++++|++.+ +++..+++.+|..|+..|.|-
T Consensus 205 ~~~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IY 256 (270)
T 2pi2_A 205 LTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIY 256 (270)
T ss_dssp ----------------------------------------------------
T ss_pred CCHHHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEe
Confidence 445666777777665 689999999988 799999999999999988874
No 395
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=21.18 E-value=1.4e+02 Score=27.97 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=35.8
Q ss_pred hcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 455 FEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 455 Fn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
|..++.++..+|++.+|++-..++.+|..|...|++...|
T Consensus 46 l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~ 85 (239)
T 2hs5_A 46 FRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHEL 85 (239)
T ss_dssp SCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 4456789999999999999999999999999999997654
No 396
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=20.94 E-value=1e+02 Score=28.79 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=30.2
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 462 TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 462 t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+..+|++.+|++...+.+.|..|.+.|++...+
T Consensus 26 ~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~ 58 (230)
T 1fx7_A 26 LRARIAERLDQSGPTVSQTVSRMERDGLLRVAG 58 (230)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred cHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 449999999999999999999999999998763
No 397
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=20.84 E-value=11 Score=33.52 Aligned_cols=48 Identities=13% Similarity=0.186 Sum_probs=41.3
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccc
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
+......|+..+..++.+|..+|++.+|++...+.+.|..|...|++.
T Consensus 11 ~d~l~~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~ 58 (163)
T 2gqq_A 11 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQ 58 (163)
T ss_dssp CCSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEE
T ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 344555677788888889999999999999999999999999999885
No 398
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=20.72 E-value=1.5e+02 Score=26.31 Aligned_cols=46 Identities=24% Similarity=0.248 Sum_probs=38.5
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHh--------CCCHHHHHHHHHHHHhcCccccC
Q psy16234 447 FQMAILLLFEKNDAMTCGDIQTVL--------SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 447 ~Q~~iLllFn~~~~lt~~ei~~~t--------~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+.+||-+..+ ...+..+|.+.+ +++...+.++|..|.+.|++...
T Consensus 3 l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~ 56 (179)
T 1yg2_A 3 LPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCV 56 (179)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred hHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEE
Confidence 35667766665 568999999988 79999999999999999999754
No 399
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=20.65 E-value=71 Score=25.63 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=35.4
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANS 601 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~ 601 (609)
....|+..+. ...++..+|... + ..+.+.+-+.|..|.+.|+|.+..+.
T Consensus 27 ~r~~IL~~L~-~~~~~~~ela~~----l---~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 27 NRIRIMELLS-VSEASVGHISHQ----L---NLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp HHHHHHHHHH-HCCBCHHHHHHH----H---TCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHH-hCCCCHHHHHHH----H---CcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3445666665 566777766543 3 36789999999999999999976543
No 400
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=20.53 E-value=1e+02 Score=27.39 Aligned_cols=34 Identities=9% Similarity=0.350 Sum_probs=29.6
Q ss_pred HhhcCCCCCCHHHHHHHhC--CCHHHHHHHHHHHHh
Q psy16234 453 LLFEKNDAMTCGDIQTVLS--LSQDQIGRHIASLVE 486 (609)
Q Consensus 453 llFn~~~~lt~~ei~~~t~--i~~~~l~~~L~~L~~ 486 (609)
++|-..+++|.++|++.++ ++.+.+...|..|..
T Consensus 15 lLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~ 50 (162)
T 1t6s_A 15 LIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNR 50 (162)
T ss_dssp HHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHH
Confidence 4566677899999999999 999999999999963
No 401
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=20.48 E-value=1e+02 Score=23.80 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHH--h------CCCHHHHHHHHHHHHhcC
Q psy16234 458 NDAMTCGDIQTV--L------SLSQDQIGRHIASLVECK 488 (609)
Q Consensus 458 ~~~lt~~ei~~~--t------~i~~~~l~~~L~~L~~~~ 488 (609)
+..+|+-||.+. | |||...|.++|..|++.|
T Consensus 25 ~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~g 63 (79)
T 3htu_A 25 NSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEH 63 (79)
T ss_dssp CSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTT
T ss_pred CceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcC
Confidence 346899999882 2 899999999999999754
No 402
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=20.41 E-value=59 Score=25.97 Aligned_cols=50 Identities=8% Similarity=0.171 Sum_probs=37.4
Q ss_pred hhhhhhhh-hhccccCC-ChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 544 YLQAAIVR-IMKSRKQI-RHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 544 ~i~A~IVR-iMK~~k~l-~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
.|...|.. .++....+ +..+|... |.++...+.+.+..|.+.|+|++..+
T Consensus 19 ~i~~~I~~~~l~~g~~lps~~eLa~~-------~~vSr~tvr~al~~L~~~Gli~~~~g 70 (102)
T 1v4r_A 19 HFRTLIKSGELAPGDTLPSVADIRAQ-------FGVAAKTVSRALAVLKSEGLVSSRGA 70 (102)
T ss_dssp HHHHHTTTTSCCTTSBCCCHHHHHHH-------SSSCTTHHHHHTTTTTTSSCCEEETT
T ss_pred HHHHHHHhCCCCCcCCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 34455555 55666666 66666533 77899999999999999999998765
No 403
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=20.31 E-value=89 Score=31.28 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 458 NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 458 ~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
..++|.+||++.+|+++..+.+.|..|+..|++...
T Consensus 41 ~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~ 76 (353)
T 4a6d_A 41 PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVE 76 (353)
T ss_dssp SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 357999999999999999999999999999999653
No 404
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=20.12 E-value=83 Score=26.35 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=34.1
Q ss_pred hhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 548 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 548 ~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
+|..+.+....++..+|-.. +..+.+.+.+.|..|.++|||+|..
T Consensus 21 ~l~~l~~~~~~~s~~ela~~-------l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 21 TIKRYNDSGEGAKINRIAKD-------LKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp HHHHHHTTTSCBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHhcCCCcCHHHHHHH-------hCCChHHHHHHHHHHHHCCCEEecC
Confidence 34455555677787766543 3477899999999999999999976
No 405
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=20.08 E-value=89 Score=24.44 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=34.1
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
...|.+.+ ...++..+|... +..+.+.+.+.|..|.+.|+|.+..
T Consensus 33 r~~Il~~L--~~~~~~~eLa~~-------l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 33 RRKILRML--DKGRSEEEIMQT-------LSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHH--HTTCCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHH--cCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 33466666 456777766644 3477899999999999999999876
No 406
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=20.04 E-value=1.3e+02 Score=28.41 Aligned_cols=42 Identities=7% Similarity=0.146 Sum_probs=37.6
Q ss_pred HHHhhcCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 451 ILLLFEKNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 451 iLllFn~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
|.- +..++.+ |..+|++..|++...++++|..|...|+|.. +
T Consensus 27 I~~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~-~ 69 (248)
T 3f8m_A 27 LDG-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER-R 69 (248)
T ss_dssp HHH-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-E
T ss_pred HhC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-C
Confidence 444 7777888 9999999999999999999999999999988 6
Done!