Query psy16234
Match_columns 609
No_of_seqs 257 out of 1013
Neff 8.3
Searched_HMMs 13730
Date Sat Aug 17 00:18:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16234.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16234hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ldja3 e.40.1.1 (A:411-686) C 100.0 1.7E-56 1.3E-60 452.0 27.1 264 252-519 5-275 (276)
2 d2hyec3 e.40.1.1 (C:403-675) C 100.0 8.1E-56 5.9E-60 446.8 26.4 266 254-522 2-271 (273)
3 d1ldja2 a.118.17.1 (A:17-410) 100.0 1.8E-40 1.3E-44 351.9 21.3 237 10-246 1-390 (394)
4 d2hyec2 a.118.17.1 (C:55-401) 100.0 1.5E-37 1.1E-41 323.9 23.7 231 8-245 3-346 (347)
5 d2hyec1 a.4.5.34 (C:676-759) C 99.9 1.1E-26 8.3E-31 185.8 8.1 83 526-609 2-84 (84)
6 d1ldja1 a.4.5.34 (A:687-776) A 99.9 8.7E-27 6.4E-31 189.3 7.5 87 523-609 3-90 (90)
7 d1iuya_ a.4.5.34 (A:) Cullin-3 99.9 4.2E-26 3.1E-30 186.6 2.8 87 523-609 5-92 (92)
8 d1mkma1 a.4.5.33 (A:1-75) Tran 94.9 0.023 1.7E-06 42.6 5.9 52 450-506 9-61 (75)
9 d1z05a1 a.4.5.63 (A:10-80) Tra 93.9 0.03 2.2E-06 41.3 4.6 46 448-493 8-53 (71)
10 d1sfxa_ a.4.5.50 (A:) Hypothet 93.6 0.033 2.4E-06 44.9 4.7 52 442-493 16-67 (109)
11 d1ylfa1 a.4.5.55 (A:5-142) Hyp 93.0 0.072 5.3E-06 44.8 6.3 58 446-507 9-66 (138)
12 d1i1ga1 a.4.5.32 (A:2-61) LprA 92.7 0.064 4.7E-06 38.1 4.5 44 449-492 6-49 (60)
13 d2a61a1 a.4.5.28 (A:5-143) Tra 92.7 0.051 3.7E-06 45.7 4.7 50 444-493 28-77 (139)
14 d2cg4a1 a.4.5.32 (A:4-66) Regu 92.5 0.071 5.2E-06 38.2 4.6 48 445-492 4-51 (63)
15 d2cfxa1 a.4.5.32 (A:1-63) Tran 92.2 0.096 7E-06 37.5 5.0 48 445-492 4-51 (63)
16 d1lnwa_ a.4.5.28 (A:) MexR rep 92.1 0.095 6.9E-06 44.1 5.8 51 443-493 33-83 (141)
17 d1ub9a_ a.4.5.28 (A:) Hypothet 91.9 0.057 4.2E-06 42.6 3.8 49 445-493 15-63 (100)
18 d2cyya1 a.4.5.32 (A:5-64) Puta 91.8 0.13 9.4E-06 36.4 5.3 46 447-492 4-49 (60)
19 d1lj9a_ a.4.5.28 (A:) Transcri 91.6 0.047 3.5E-06 46.3 3.2 50 444-493 27-76 (144)
20 d2d1ha1 a.4.5.50 (A:1-109) Hyp 91.3 0.1 7.4E-06 41.8 4.8 51 443-493 18-69 (109)
21 d1wi9a_ a.4.5.47 (A:) Hypothet 91.2 0.11 8.2E-06 37.5 4.3 56 547-609 10-65 (72)
22 d2etha1 a.4.5.28 (A:1-140) Put 90.9 0.1 7.3E-06 43.8 4.5 51 443-493 29-79 (140)
23 d1z91a1 a.4.5.28 (A:8-144) Org 90.8 0.081 5.9E-06 44.3 3.9 51 444-494 31-81 (137)
24 d2frha1 a.4.5.28 (A:102-216) P 90.6 0.12 9E-06 41.7 4.7 52 443-494 30-83 (115)
25 d1biaa1 a.4.5.1 (A:1-63) Bioti 89.6 0.4 2.9E-05 34.1 6.2 46 447-492 6-51 (63)
26 d1z6ra1 a.4.5.63 (A:12-81) Mlc 89.4 0.27 2E-05 35.8 5.3 45 449-493 8-52 (70)
27 d1s3ja_ a.4.5.28 (A:) Putative 89.3 0.12 8.7E-06 43.4 3.7 50 444-493 33-82 (143)
28 d1p4xa1 a.4.5.28 (A:1-125) Sta 89.1 0.11 7.8E-06 42.8 3.2 51 443-493 31-83 (125)
29 d1p4xa2 a.4.5.28 (A:126-250) S 89.0 0.2 1.5E-05 41.1 4.8 51 443-493 30-82 (125)
30 d1jgsa_ a.4.5.28 (A:) Multiple 88.8 0.15 1.1E-05 42.5 4.0 50 444-493 32-81 (138)
31 d2fbia1 a.4.5.28 (A:5-140) Pro 88.8 0.16 1.2E-05 42.2 4.1 50 444-493 28-77 (136)
32 d2fxaa1 a.4.5.28 (A:6-167) Pro 88.7 0.13 9.4E-06 44.4 3.6 51 443-493 38-88 (162)
33 d1ku9a_ a.4.5.36 (A:) DNA-bind 88.5 0.41 3E-05 40.2 6.8 47 446-493 26-74 (151)
34 d3broa1 a.4.5.28 (A:3-137) Tra 88.5 0.26 1.9E-05 40.7 5.3 51 443-493 26-78 (135)
35 d1hsja1 a.4.5.28 (A:373-487) S 88.4 0.23 1.7E-05 40.1 4.7 51 444-494 30-82 (115)
36 d1xd7a_ a.4.5.55 (A:) Hypothet 88.4 0.54 3.9E-05 38.4 7.2 56 447-508 7-62 (127)
37 d1tw3a1 a.4.5.29 (A:14-98) Car 88.1 0.31 2.3E-05 37.0 5.1 45 458-507 32-76 (85)
38 d1dpua_ a.4.5.16 (A:) C-termin 87.5 0.42 3E-05 34.6 5.1 49 444-492 4-56 (69)
39 d2bv6a1 a.4.5.28 (A:5-140) Tra 87.1 0.15 1.1E-05 42.4 2.9 50 444-493 32-81 (136)
40 d2hr3a1 a.4.5.28 (A:2-146) Pro 87.1 0.32 2.3E-05 40.8 5.1 52 443-494 31-83 (145)
41 d1p6ra_ a.4.5.39 (A:) Penicill 86.9 0.3 2.2E-05 36.8 4.3 61 545-609 10-70 (82)
42 d3deua1 a.4.5.28 (A:2-141) Tra 86.8 0.32 2.3E-05 40.4 4.8 51 444-494 29-80 (140)
43 d1u2wa1 a.4.5.5 (A:12-119) Cad 86.7 0.49 3.6E-05 37.6 5.7 60 446-507 31-90 (108)
44 d2hoea1 a.4.5.63 (A:10-71) N-a 86.0 0.36 2.6E-05 34.2 4.0 34 460-493 12-45 (62)
45 d2fbha1 a.4.5.28 (A:8-144) Tra 85.6 0.31 2.3E-05 40.3 4.2 51 444-494 26-77 (137)
46 d2ev0a1 a.4.5.24 (A:2-62) Mang 84.1 0.6 4.4E-05 32.9 4.4 44 451-494 12-55 (61)
47 d1lvaa3 a.4.5.35 (A:511-574) C 83.9 0.92 6.7E-05 32.2 5.4 45 449-493 10-56 (64)
48 d2isya1 a.4.5.24 (A:2-64) Iron 82.5 1.1 8.4E-05 31.5 5.4 44 451-494 14-57 (63)
49 d1j5ya1 a.4.5.1 (A:3-67) Putat 82.3 0.86 6.2E-05 32.4 4.8 42 448-489 9-51 (65)
50 d1okra_ a.4.5.39 (A:) Methicil 82.2 0.5 3.6E-05 38.2 3.8 60 546-609 9-68 (120)
51 d1sfua_ a.4.5.19 (A:) 34L {Yab 81.4 0.87 6.3E-05 32.6 4.3 44 451-494 15-58 (70)
52 d1ulya_ a.4.5.58 (A:) Hypothet 81.0 1.1 8.2E-05 39.0 6.2 48 444-492 17-64 (190)
53 d1jhfa1 a.4.5.2 (A:2-72) LexA 80.8 1.4 0.0001 31.8 5.6 51 444-494 3-59 (71)
54 d3ctaa1 a.4.5.28 (A:5-89) Ta10 78.9 1 7.3E-05 33.9 4.4 41 452-492 13-53 (85)
55 d1r1ta_ a.4.5.5 (A:) SmtB repr 78.3 2 0.00014 33.2 6.1 43 450-493 27-69 (98)
56 d1r1ua_ a.4.5.5 (A:) Metal-sen 76.6 1.9 0.00014 33.0 5.5 44 449-493 21-64 (94)
57 d2g9wa1 a.4.5.39 (A:3-124) Hyp 76.4 0.97 7.1E-05 36.6 3.8 62 544-609 7-69 (122)
58 d1qzza1 a.4.5.29 (A:10-101) Ac 74.9 1.4 9.9E-05 33.7 4.1 37 458-494 38-74 (92)
59 d1i1ga1 a.4.5.32 (A:2-61) LprA 74.5 2.1 0.00015 29.7 4.7 48 545-599 4-51 (60)
60 d1jhfa1 a.4.5.2 (A:2-72) LexA 71.4 3.7 0.00027 29.4 5.6 59 541-605 6-65 (71)
61 d1sd4a_ a.4.5.39 (A:) Penicill 70.6 1.5 0.00011 35.3 3.7 60 546-609 8-67 (122)
62 d2gxba1 a.4.5.19 (A:140-198) Z 70.3 3.6 0.00027 28.0 4.8 40 455-494 11-50 (59)
63 d2cg4a1 a.4.5.32 (A:4-66) Regu 69.4 2.9 0.00021 29.2 4.6 47 544-597 5-51 (63)
64 d2bbya_ a.4.5.15 (A:) DNA-bind 69.2 5.5 0.0004 28.3 5.9 57 448-510 10-66 (69)
65 d1i5za1 a.4.5.4 (A:138-206) Ca 69.0 3.1 0.00023 29.5 4.7 34 460-493 29-62 (69)
66 d1hw1a1 a.4.5.6 (A:5-78) Fatty 68.7 3.9 0.00028 29.6 5.3 38 457-494 23-61 (74)
67 d2obpa1 a.4.5.71 (A:12-92) Put 68.5 5 0.00037 28.9 5.5 45 447-491 5-55 (81)
68 d2cyya1 a.4.5.32 (A:5-64) Puta 67.7 3.6 0.00027 28.3 4.7 49 544-599 3-51 (60)
69 d1zyba1 a.4.5.4 (A:148-220) Pr 66.8 4 0.00029 29.4 5.0 34 460-493 27-60 (73)
70 d2p4wa1 a.4.5.64 (A:1-194) Tra 66.4 3.9 0.00029 35.5 5.9 59 450-509 19-80 (194)
71 d2fswa1 a.4.5.69 (A:3-104) Hyp 65.9 4.1 0.0003 31.5 5.2 43 450-493 24-67 (102)
72 d2htja1 a.4.5.73 (A:1-73) P fi 65.8 3.4 0.00025 28.6 4.0 45 450-494 4-48 (73)
73 d2f2ea1 a.4.5.69 (A:5-146) Hyp 65.7 5.4 0.0004 32.8 6.3 44 448-492 22-65 (142)
74 d1fp2a1 a.4.5.29 (A:8-108) Iso 65.5 1.9 0.00014 33.5 3.0 47 458-507 42-91 (101)
75 d2cfxa1 a.4.5.32 (A:1-63) Tran 65.1 4.2 0.00031 28.3 4.7 48 544-598 5-52 (63)
76 d2hzta1 a.4.5.69 (A:4-98) Puta 65.0 5.7 0.00042 30.2 5.8 44 449-493 14-58 (95)
77 d2gaua1 a.4.5.4 (A:152-232) Tr 64.5 4.4 0.00032 29.5 5.0 34 460-493 29-62 (81)
78 d2fbka1 a.4.5.28 (A:8-179) Tra 63.9 1.6 0.00012 37.4 2.5 51 444-494 60-113 (172)
79 d3e5ua1 a.4.5.4 (A:148-227) Ch 63.0 3.8 0.00028 29.9 4.3 34 460-493 30-63 (80)
80 d2dk5a1 a.4.5.85 (A:8-85) DNA- 62.1 5.7 0.00042 29.0 5.0 49 445-493 12-62 (78)
81 d1sfxa_ a.4.5.50 (A:) Hypothet 61.7 2.4 0.00018 33.2 3.1 58 544-608 20-79 (109)
82 d1okra_ a.4.5.39 (A:) Methicil 61.5 3 0.00022 33.2 3.7 51 443-493 4-58 (120)
83 d3bwga1 a.4.5.6 (A:5-82) Trans 59.7 13 0.00092 26.8 6.8 40 455-494 16-56 (78)
84 d1yyva1 a.4.5.69 (A:9-122) Put 59.1 5.2 0.00038 31.6 4.7 46 447-493 25-71 (114)
85 d2zcwa1 a.4.5.4 (A:118-199) Tr 58.2 6.5 0.00048 28.7 4.9 34 460-493 29-62 (82)
86 d1u5ta2 a.4.5.54 (A:165-232) V 57.7 6.3 0.00046 27.9 4.4 50 445-494 2-51 (68)
87 d1ft9a1 a.4.5.4 (A:134-213) CO 57.6 5.8 0.00042 28.9 4.5 34 460-493 30-63 (80)
88 d2hs5a1 a.4.5.6 (A:25-93) Puta 55.0 13 0.00093 26.1 5.9 41 454-494 19-59 (69)
89 d2d1ha1 a.4.5.50 (A:1-109) Hyp 54.9 4.6 0.00033 31.3 3.7 51 546-603 23-74 (109)
90 d1q1ha_ a.4.5.41 (A:) Transcri 54.0 6.6 0.00048 29.3 4.1 38 454-491 27-64 (88)
91 d1a04a1 a.4.6.2 (A:150-216) Ni 53.9 11 0.00081 26.2 5.4 41 444-486 7-47 (67)
92 d1lnwa_ a.4.5.28 (A:) MexR rep 53.9 6.6 0.00048 31.9 4.7 49 545-600 37-85 (141)
93 d2fnaa1 a.4.5.11 (A:284-356) H 52.6 18 0.0013 25.8 6.2 42 450-493 10-57 (73)
94 d1z05a1 a.4.5.63 (A:10-80) Tra 49.0 6.8 0.0005 27.7 3.5 45 547-598 9-53 (71)
95 d1l3la1 a.4.6.2 (A:170-234) Qu 49.0 17 0.0012 25.0 5.7 41 444-486 5-45 (65)
96 d1ku3a_ a.4.13.2 (A:) Sigma70 48.3 12 0.0009 25.7 4.6 34 448-481 13-49 (61)
97 d1fsea_ a.4.6.2 (A:) Germinati 48.2 17 0.0012 25.2 5.6 41 444-486 5-45 (67)
98 d1l0oc_ a.4.13.2 (C:) SigmaF { 48.2 7.1 0.00052 26.5 3.3 25 459-483 30-54 (57)
99 d1z7ua1 a.4.5.69 (A:1-108) Hyp 47.9 11 0.00077 29.3 4.8 43 450-493 23-66 (108)
100 d1rp3a2 a.4.13.2 (A:164-234) S 46.4 14 0.001 25.7 4.9 38 445-484 23-61 (71)
101 d2etha1 a.4.5.28 (A:1-140) Put 46.0 10 0.00075 30.5 4.7 51 546-603 34-84 (140)
102 d1ufma_ a.4.5.47 (A:) COP9 sig 44.7 16 0.0012 26.8 5.1 46 446-491 16-61 (84)
103 d1z6ra1 a.4.5.63 (A:12-81) Mlc 44.5 15 0.0011 25.8 4.7 45 547-598 8-52 (70)
104 d2bgca1 a.4.5.4 (A:138-237) Li 43.9 15 0.0011 27.9 5.0 34 460-493 31-65 (100)
105 d1ub9a_ a.4.5.28 (A:) Hypothet 43.3 8.9 0.00065 29.0 3.6 48 545-599 17-64 (100)
106 d1yioa1 a.4.6.2 (A:131-200) Re 42.6 23 0.0016 24.8 5.5 41 444-486 13-53 (70)
107 d1fy7a_ d.108.1.1 (A:) Histone 41.6 9.6 0.0007 34.7 4.0 43 447-492 192-235 (273)
108 d1hw1a1 a.4.5.6 (A:5-78) Fatty 40.8 12 0.00088 26.7 3.7 50 544-600 12-62 (74)
109 d1or7a1 a.4.13.2 (A:120-187) S 39.8 21 0.0015 24.6 4.9 25 459-483 33-57 (68)
110 d1xsva_ a.4.13.3 (A:) Hypothet 39.5 18 0.0013 27.9 4.8 37 445-483 20-57 (106)
111 d2bv6a1 a.4.5.28 (A:5-140) Tra 39.5 8.9 0.00065 30.7 3.2 49 545-600 35-83 (136)
112 d1stza1 a.4.5.51 (A:14-100) He 39.2 27 0.0019 25.7 5.6 38 456-493 19-58 (87)
113 d1s7oa_ a.4.13.3 (A:) Hypothet 39.2 17 0.0012 28.0 4.6 39 444-484 17-56 (106)
114 d1t6sa1 a.4.5.60 (A:1-85) Segr 39.1 17 0.0012 26.6 4.5 34 453-486 15-50 (85)
115 d2hyec1 a.4.5.34 (C:676-759) C 38.5 28 0.002 25.5 5.6 49 446-494 20-74 (84)
116 d1jgsa_ a.4.5.28 (A:) Multiple 38.5 12 0.00084 30.1 3.8 48 545-599 35-82 (138)
117 d1p4wa_ a.4.6.2 (A:) Transcrip 37.5 22 0.0016 26.0 5.0 41 444-486 23-63 (87)
118 d2fbia1 a.4.5.28 (A:5-140) Pro 37.4 9.1 0.00066 30.7 2.9 51 544-601 30-80 (136)
119 d1s6la1 a.4.5.79 (A:21-80) Alk 36.4 17 0.0012 24.6 3.6 36 451-486 7-42 (60)
120 d2fxaa1 a.4.5.28 (A:6-167) Pro 36.2 13 0.00093 31.0 3.8 48 546-600 43-90 (162)
121 d1lvaa4 a.4.5.35 (A:575-634) C 35.4 34 0.0024 23.3 5.1 44 450-493 8-51 (60)
122 d1dpua_ a.4.5.16 (A:) C-termin 35.2 16 0.0012 25.8 3.5 39 555-599 20-58 (69)
123 d1xmka1 a.4.5.19 (A:294-366) Z 34.6 7.8 0.00057 27.8 1.7 45 448-493 7-53 (73)
124 d2giva1 d.108.1.1 (A:4-274) Pr 33.7 16 0.0012 33.0 4.1 43 447-492 189-232 (271)
125 d1ldja1 a.4.5.34 (A:687-776) A 32.9 42 0.003 24.8 5.9 49 446-494 24-80 (90)
126 d1bl0a1 a.4.1.8 (A:9-62) MarA 32.3 30 0.0022 22.5 4.5 30 458-487 17-46 (54)
127 d1biaa1 a.4.5.1 (A:1-63) Bioti 32.2 21 0.0015 24.4 3.8 45 546-597 7-51 (63)
128 d3bwga1 a.4.5.6 (A:5-82) Trans 31.4 34 0.0025 24.3 5.0 43 551-600 14-57 (78)
129 d1gpja1 a.151.1.1 (A:303-404) 30.5 61 0.0044 24.2 6.7 44 95-138 25-68 (102)
130 d1bm9a_ a.4.5.7 (A:) Replicati 30.4 24 0.0017 26.8 3.9 54 544-598 16-71 (120)
131 d1iuya_ a.4.5.34 (A:) Cullin-3 30.1 39 0.0029 25.0 5.3 50 445-494 25-82 (92)
132 d1lj9a_ a.4.5.28 (A:) Transcri 29.8 17 0.0012 29.3 3.4 49 546-601 31-79 (144)
133 d1ttya_ a.4.13.2 (A:) Sigma70 29.7 32 0.0023 25.3 4.6 39 445-483 20-61 (87)
134 d1sd4a_ a.4.5.39 (A:) Penicill 29.0 23 0.0017 27.8 4.0 52 442-493 2-57 (122)
135 d2a61a1 a.4.5.28 (A:5-143) Tra 28.7 14 0.001 29.5 2.7 49 545-600 31-79 (139)
136 d2ozua1 d.108.1.1 (A:507-776) 28.3 25 0.0018 31.6 4.5 44 447-493 189-234 (270)
137 d1r7ja_ a.4.5.49 (A:) Sso10a ( 27.3 47 0.0034 24.5 5.2 35 459-493 17-51 (90)
138 d1z91a1 a.4.5.28 (A:8-144) Org 27.1 18 0.0013 28.8 3.1 27 575-601 57-83 (137)
139 d1mkma1 a.4.5.33 (A:1-75) Tran 27.0 35 0.0026 24.0 4.4 42 556-606 18-59 (75)
140 d2hs5a1 a.4.5.6 (A:25-93) Puta 26.6 29 0.0021 24.1 3.7 48 550-605 17-64 (69)
141 d2p5ka1 a.4.5.3 (A:2-64) Argin 26.6 65 0.0047 21.9 5.5 57 546-608 6-62 (63)
142 d1mzba_ a.4.5.42 (A:) Ferric u 26.1 39 0.0028 26.6 5.0 51 443-493 13-70 (134)
143 d1hsja1 a.4.5.28 (A:373-487) S 25.9 18 0.0013 28.0 2.7 26 575-600 58-83 (115)
144 d1mzba_ a.4.5.42 (A:) Ferric u 25.8 52 0.0038 25.8 5.8 57 548-606 20-78 (134)
145 d1p6ra_ a.4.5.39 (A:) Penicill 25.6 54 0.0039 23.5 5.3 50 444-493 7-60 (82)
146 d1bjaa_ a.4.5.9 (A:) Transcrip 25.4 48 0.0035 23.9 4.6 47 448-494 18-65 (95)
147 d1s3ja_ a.4.5.28 (A:) Putative 25.3 19 0.0014 28.9 2.8 46 548-600 39-84 (143)
148 d2fbha1 a.4.5.28 (A:8-144) Tra 25.1 30 0.0022 27.2 4.2 39 555-600 40-78 (137)
149 d1v4ra1 a.4.5.6 (A:1-100) Tran 23.6 14 0.001 28.1 1.5 40 455-494 27-67 (100)
150 d1uhsa_ a.4.1.1 (A:) Homeodoma 23.4 38 0.0027 23.9 3.8 37 442-478 6-47 (72)
151 d2p7vb1 a.4.13.2 (B:546-613) S 23.3 35 0.0025 23.8 3.5 39 445-483 7-48 (68)
152 d1d8ja_ a.4.5.18 (A:) The cent 23.1 18 0.0013 26.0 1.8 59 542-608 9-75 (81)
153 d1j5ya1 a.4.5.1 (A:3-67) Putat 23.0 35 0.0026 23.2 3.6 45 548-599 11-57 (65)
154 d2hr3a1 a.4.5.28 (A:2-146) Pro 22.9 41 0.003 26.7 4.6 48 546-600 36-84 (145)
155 d2frha1 a.4.5.28 (A:102-216) P 22.8 19 0.0014 27.8 2.3 27 575-601 59-85 (115)
156 d1xmaa_ a.4.5.61 (A:) Predicte 20.8 73 0.0053 23.7 5.4 55 542-597 5-60 (103)
157 d1rp3a1 a.4.13.1 (A:87-163) Si 20.7 29 0.0021 24.6 2.7 28 458-485 24-51 (77)
158 d1hsta_ a.4.5.13 (A:) Histone 20.2 59 0.0043 22.8 4.4 55 544-599 8-62 (74)
No 1
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.7e-56 Score=452.01 Aligned_cols=264 Identities=48% Similarity=0.810 Sum_probs=248.4
Q ss_pred CCCchhHhHHHHHHHHhccCCCCChhhHhhhhhhhhheeeccCChHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Q psy16234 252 PSKSPEYLAKYCDMLLKKSSKGLSESEMDDKLSQSITVFKYIDDKDVFHKFYAKMLAKRLIHQQSTSMDGEEAMINKLKQ 331 (609)
Q Consensus 252 ~~~~~e~La~y~D~~lkk~~k~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~Lk~ 331 (609)
+.++||+||+|||.++|++.++.++++++..++.++.||+|+++||+|+.+|+++||+|||.+++.+.+.|+.+|+.|+.
T Consensus 5 ~~~~~e~La~y~D~~lk~~~k~~~~~~~~~~l~~i~~if~~l~~KD~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~Lk~ 84 (276)
T d1ldja3 5 SSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQ 84 (276)
T ss_dssp TTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 47899999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred HhCchhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCCCcceEEEeeecCCCCCCCCCCCCccCchHHHHHHHHHHHHH
Q psy16234 332 ACGYEFTNKFHRMLTDIKISGGLNEKFHSEFVKTNEIDLGIHFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFY 411 (609)
Q Consensus 332 ~~G~~~t~kl~~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~f~~~VLt~~~WP~~~~~~~~~~lP~~l~~~~~~F~~~Y 411 (609)
+||.+++.+|++|++|+..|++++.+| ++++.... ..+++|+|.||++++||..+. .++.+|++|+++++.|++||
T Consensus 85 ~~g~~~~~kl~~Ml~D~~~S~~~~~~f-~~~~~~~~-~~~~~~~v~Vlt~~~WP~~~~--~~~~lP~~l~~~~~~f~~~Y 160 (276)
T d1ldja3 85 ACGFEYTSKLQRMFQDIGVSKDLNEQF-KKHLTNSE-PLDLDFSIQVLSSGSWPFQQS--CTFALPSELERSYQRFTAFY 160 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTTC-CCSSEEEEEEEETTTSCCCCC--SCCCCCGGGHHHHHHHHHHT
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccC-CcCceEEEEEeeCCccCcCCC--CCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 77765443 257899999999999998765 58999999999999999999
Q ss_pred hhcCCCcceeeecccceEEEEEEEeCccEEEEecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccc
Q psy16234 412 HGQFNGRKLSWLHNISQVELKLSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 412 ~~k~~~RkL~W~~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
+++|+||+|.|.|++|+|+|+++|+++.|+|+||++||+||++||+++++|+++|++.||++.++++++|.+|++.|+|.
T Consensus 161 ~~~~~~RkL~w~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFN~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~kll~ 240 (276)
T d1ldja3 161 ASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLV 240 (276)
T ss_dssp TTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEE
T ss_pred HHhCCCCeEEEecCCCcEEEEEEECCCcEEEEECHHHHHHHHhhcCCCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC-------CCCCCCCEEEEecCCCCCcceEEec
Q psy16234 492 SNK-------EELTEDTEIRLNLGYNNKRTKLKIS 519 (609)
Q Consensus 492 ~~~-------~~~~~~~~f~lN~~F~~~~~ki~i~ 519 (609)
..+ ..+.+++.|.+|.+|+++++||+|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~N~~f~~~~~ki~vn 275 (276)
T d1ldja3 241 LEDENANVDEVELKPDTLIKLYLGYKNKKLRVNIN 275 (276)
T ss_dssp CSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCC
T ss_pred ecCCCCCccccccCCCCEEEEecCCCCCCeEEEeC
Confidence 543 3467899999999999999999885
No 2
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=8.1e-56 Score=446.84 Aligned_cols=266 Identities=29% Similarity=0.528 Sum_probs=250.4
Q ss_pred CchhHhHHHHHHHHhccCCCCChhhHhhhhhhhhheeeccCChHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHh
Q psy16234 254 KSPEYLAKYCDMLLKKSSKGLSESEMDDKLSQSITVFKYIDDKDVFHKFYAKMLAKRLIHQQSTSMDGEEAMINKLKQAC 333 (609)
Q Consensus 254 ~~~e~La~y~D~~lkk~~k~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~s~~~E~~~i~~Lk~~~ 333 (609)
++||+||+|||.++|++.++.++++++..+++++.+|+|++|||+|+.+|+++||+|||.+.+.+.+.|+.+|++|+.+|
T Consensus 2 ~~~e~la~y~D~~lr~~~k~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~L~~~~ 81 (273)
T d2hyec3 2 KPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHEC 81 (273)
T ss_dssp HHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999998888888899999999999999999999999999999999999999989999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCCCcceEEEeeecCCCCCCCCCCCCccCchHHHHHHHHHHHHHhh
Q psy16234 334 GYEFTNKFHRMLTDIKISGGLNEKFHSEFVKTNEIDLGIHFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHG 413 (609)
Q Consensus 334 G~~~t~kl~~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~f~~~VLt~~~WP~~~~~~~~~~lP~~l~~~~~~F~~~Y~~ 413 (609)
|.++|.+|++|++|+..|++++.+| ++++.......+++|+|.||+++.||..+. .++.+|++|..+++.|++||.+
T Consensus 82 g~~~~~kl~~Ml~D~~~S~~l~~~f-~~~~~~~~~~~~~~~~v~vLs~~~WP~~~~--~~~~lP~~l~~~~~~F~~~Y~~ 158 (273)
T d2hyec3 82 GAAFTSKLEGMFKDMELSKDIMVHF-KQHMQNQSDSGPIDLTVNILTMGYWPTYTP--MEVHLTPEMIKLQEVFKAFYLG 158 (273)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHH-HHHHHTTCCCCCCEEEEEEEETTTSCCCCC--CCCCCCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccccCCCCceEEEEeeCCCCCCCCC--CCCcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 777776665578999999999999998875 5899999999999999999999
Q ss_pred cCCCcceeeecccceEEEEEEEeCccEEEEecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh--cCccc
Q psy16234 414 QFNGRKLSWLHNISQVELKLSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE--CKLLT 491 (609)
Q Consensus 414 k~~~RkL~W~~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~--~~iL~ 491 (609)
+|+||+|.|++++|+|+|+++|+++.++++||++||+||++||+.+++|+++|++.||++.+.++++|.+|+. .+||.
T Consensus 159 ~~~~RkL~w~~~ls~~~l~~~~~~~~~~l~~s~~Qa~ILl~fn~~~~~t~~~i~~~~~i~~~~l~~~L~~L~~~k~~iL~ 238 (273)
T d2hyec3 159 KHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLI 238 (273)
T ss_dssp TSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEE
T ss_pred hCCCCEEEEecCCccEEEEEEECCCcEEEEEcHHHHHHHHHhcCCCCCcHHHHHHHHCcCHHHHHHHHHHHHhcccceee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995 45777
Q ss_pred cCC--CCCCCCCEEEEecCCCCCcceEEecccc
Q psy16234 492 SNK--EELTEDTEIRLNLGYNNKRTKLKISGAV 522 (609)
Q Consensus 492 ~~~--~~~~~~~~f~lN~~F~~~~~ki~i~~~~ 522 (609)
+.+ +.+.+++.|.+|.+|+++++||+|++++
T Consensus 239 ~~~~~~~~~~~~~~~~N~~F~~k~~kiki~~~~ 271 (273)
T d2hyec3 239 KSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQ 271 (273)
T ss_dssp ETTCSSSCCSSCEEEECCCCCCSCSSEECGGGG
T ss_pred ecCCCCcCCCCCEEEEeccCCCCCeEEeecccc
Confidence 665 5678899999999999999999998764
No 3
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.8e-40 Score=351.90 Aligned_cols=237 Identities=32% Similarity=0.586 Sum_probs=222.3
Q ss_pred hHhhHHHHHHHHHHHHhcCCCChhhhhhhhhhhhhhcccCCcc------------------------cHHHHHHHHHhhh
Q psy16234 10 FNKTWGSLQETIQGVITLGNVRRATWNDRFSDIYSLCVAYPEP------------------------LADRLYQETKLFL 65 (609)
Q Consensus 10 fe~~W~~l~~~i~~i~~~~~~~~~~~~~~y~~vy~~c~~~~~~------------------------~~~~Ly~~~~~~l 65 (609)
.|++|+.|++||+.|++.+++++..||++|++||++|++.+.+ +|++||+++++++
T Consensus 1 ~d~~W~~L~~ai~~I~~~~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (394)
T d1ldja2 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (394)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCccccccccccchhhhhhccccchhhhHHHHHHHHHHHHH
Confidence 4899999999999999988999999999999999999976432 6889999998888
Q ss_pred hhh-----------------------------------------------------------------------------
Q psy16234 66 DQH----------------------------------------------------------------------------- 68 (609)
Q Consensus 66 ~~~----------------------------------------------------------------------------- 68 (609)
..|
T Consensus 81 ~~~l~~i~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~~v~~~~~ 160 (394)
T d1ldja2 81 KNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLN 160 (394)
T ss_dssp HHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTTTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHHHH
Confidence 765
Q ss_pred --------------------------------------------------ccHHhhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16234 69 --------------------------------------------------LYVDIFETQFLEMSGEWYKSEASKLLQTCN 98 (609)
Q Consensus 69 --------------------------------------------------~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s 98 (609)
+|.+.||++||++|.+||++++..|+++++
T Consensus 161 ~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~~~l~~~~ 240 (394)
T d1ldja2 161 KQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNP 240 (394)
T ss_dssp THHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 499999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhhhHHHHhcccHHHHHHHHHhhhcccccHHHH
Q psy16234 99 VSQYMERVLQVLHEETNRSVRFLHVSSYPKVKAKCEQHMVADHLNFLQGECVPMVAEERRHDLANMYPLLRSVREGINIL 178 (609)
Q Consensus 99 ~~eYl~~v~~~l~~E~~r~~~yL~~~t~~kl~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l 178 (609)
+++||++|+.++++|.+||..||+++|.+++.++|+++||.+|++.|.+||..||++++.++|++||+|++++++|++.|
T Consensus 241 ~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~lY~L~~rv~~~~~~l 320 (394)
T d1ldja2 241 VTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGEL 320 (394)
T ss_dssp TTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHHHHHHSTTCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhhccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccC--CCchHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcCC
Q psy16234 179 IDAVRDHICKQGLEAISGLSG--DNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVINHK 246 (609)
Q Consensus 179 ~~~~~~~i~~~g~~~~~~~~~--~~~~~~~V~~ll~~~~k~~~li~~~F~~~~~f~~~l~~af~~~~N~~ 246 (609)
+.+|++||++.|.+++..... .++|..||+.|+++|++|+.++..||++|+.|..++++||+.|+|++
T Consensus 321 ~~~~~~~I~~~G~~~i~~~~~~~~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~l~~af~~fiN~n 390 (394)
T d1ldja2 321 KKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNN 390 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcc
Confidence 999999999999999986533 34689999999999999999999999999999999999999999987
No 4
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.5e-37 Score=323.89 Aligned_cols=231 Identities=25% Similarity=0.430 Sum_probs=216.6
Q ss_pred cChHhhHHHHHHHHHHHHhcCCCChhhhhhhhhhhhhhcccCCcccHHHHHHHHHhhhhhh-------------------
Q psy16234 8 VDFNKTWGSLQETIQGVITLGNVRRATWNDRFSDIYSLCVAYPEPLADRLYQETKLFLDQH------------------- 68 (609)
Q Consensus 8 ~~fe~~W~~l~~~i~~i~~~~~~~~~~~~~~y~~vy~~c~~~~~~~~~~Ly~~~~~~l~~~------------------- 68 (609)
..||++|..|++||+.|+..++ ++..|+++|++||++|++. .|++||++++.++.+|
T Consensus 3 ~~~e~~W~~L~~ai~~I~~~~~-~~~s~e~lY~~vy~lc~~~---~~~~LY~~l~~~l~~~~~~~~~~~~~~~~~~~~~L 78 (347)
T d2hyec2 3 NYTQDTWRKLHEAVRAVQSSTS-IRYNLEELYQAVENLCSHK---VSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFL 78 (347)
T ss_dssp CTTTTHHHHHHHHHHTTSTTCC-CSSCHHHHHHHHHHHCCTT---THHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHccC---cHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 5799999999999999988654 4567999999999999986 6899999998887766
Q ss_pred --------------------------------------------------------------------------------
Q psy16234 69 -------------------------------------------------------------------------------- 68 (609)
Q Consensus 69 -------------------------------------------------------------------------------- 68 (609)
T Consensus 79 ~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~i~~~~l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~ 158 (347)
T d2hyec2 79 KKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRS 158 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhhcCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence
Q ss_pred -------------ccHHhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHH
Q psy16234 69 -------------LYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYPKVKAKCEQ 135 (609)
Q Consensus 69 -------------~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~eYl~~v~~~l~~E~~r~~~yL~~~t~~kl~~~l~~ 135 (609)
+|.+.||++||++|.+||++++..|++++++++|+.+|+.++++|.+||..||+++|.++|.++|++
T Consensus 159 ll~~~~~~~~~l~~Y~~~fE~~~l~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t~~~l~~~l~~ 238 (347)
T d2hyec2 159 LLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEK 238 (347)
T ss_dssp HHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HhhhHHHHhcccHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHH
Q psy16234 136 HMVADHLNFL-QGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRDHICKQGLEAISGLSGDNISTQFVENMLAVH 214 (609)
Q Consensus 136 ~LI~~~~~~l-~~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~V~~ll~~~ 214 (609)
+||.+|.+.+ .+++..||++++.++|++||+|++++++|++.++++|++||++.|.+++.... .+..||+.|+++|
T Consensus 239 ~Li~~~~~~il~~~~~~ll~~~~~~~L~~ly~L~~r~~~~~~~l~~~f~~~i~~~G~~~v~~~~---~~~~~V~~ll~l~ 315 (347)
T d2hyec2 239 QLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE---KDKDMVQDLLDFK 315 (347)
T ss_dssp HHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGG---GTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHH
Confidence 9999999876 57899999999999999999999999999999999999999999999997544 3457999999999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHhhcC
Q psy16234 215 KKYKAFVKELFSGDQSFMGALDKACSSVINH 245 (609)
Q Consensus 215 ~k~~~li~~~F~~~~~f~~~l~~af~~~~N~ 245 (609)
++|+.++..||++|+.|.+++++||+.|+|+
T Consensus 316 ~k~~~li~~~F~~d~~f~~~l~~af~~~iNk 346 (347)
T d2hyec2 316 DKVDHVIEVCFQKNERFVNLMKESFETFINK 346 (347)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999996
No 5
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=1.1e-26 Score=185.80 Aligned_cols=83 Identities=46% Similarity=0.647 Sum_probs=79.8
Q ss_pred ChhHHhhhhhhHHHHhhhhhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q psy16234 526 TPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 605 (609)
Q Consensus 526 ~~~e~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y 605 (609)
+++|.+.+.+.+.++|...|+||||||||++|+|+|++|+.+|.++++ |+|++++||+|||.||+||||+|+++|+++|
T Consensus 2 ~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~~k~l~h~eL~~~v~~~l~-f~~~~~~iK~~Ie~LIereYi~R~~~~~~~y 80 (84)
T d2hyec1 2 TVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK-FPVKPGDLKKRIESLIDRDYMERDKDNPNQY 80 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS-SCCCHHHHHHHHHHHHHTTSCBCCSSCTTEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhhhHhhcCCCCCcee
Confidence 556788888999999999999999999999999999999999999997 9999999999999999999999999999999
Q ss_pred eecC
Q psy16234 606 SYVA 609 (609)
Q Consensus 606 ~Yia 609 (609)
+|+|
T Consensus 81 ~Y~A 84 (84)
T d2hyec1 81 HYVA 84 (84)
T ss_dssp ECCC
T ss_pred eeeC
Confidence 9998
No 6
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=8.7e-27 Score=189.27 Aligned_cols=87 Identities=53% Similarity=0.833 Sum_probs=82.3
Q ss_pred ccCChhHHhhhhhhHHHHhhhhhhhhhhhhhccccCCChHHHHHHHHHhhcC-CCCChHHHHHHHHHhhhhccccccCCC
Q psy16234 523 QKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANS 601 (609)
Q Consensus 523 ~~~~~~e~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r~~~~ 601 (609)
++++++|.+.+.+.++++|...|+||||||||++|+|+|++|+.+|.+++++ |+|++.+||+|||.||+||||+|+++|
T Consensus 3 ~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~~k~l~h~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereYi~R~~~~ 82 (90)
T d1ldja1 3 KTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGE 82 (90)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhHHHhcCCCC
Confidence 3445567888899999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCceeecC
Q psy16234 602 TDEYSYVA 609 (609)
Q Consensus 602 ~~~y~Yia 609 (609)
+++|+|+|
T Consensus 83 ~~~y~YvA 90 (90)
T d1ldja1 83 KDTYSYLA 90 (90)
T ss_dssp TTEEEECC
T ss_pred CceeeeeC
Confidence 99999998
No 7
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.91 E-value=4.2e-26 Score=186.65 Aligned_cols=87 Identities=51% Similarity=0.721 Sum_probs=80.5
Q ss_pred ccCChhHHhhhhhhHHHHhhhhhhhhhhhhhccccCCChHHHHHHHHHhhcC-CCCChHHHHHHHHHhhhhccccccCCC
Q psy16234 523 QKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANS 601 (609)
Q Consensus 523 ~~~~~~e~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r~~~~ 601 (609)
++++++|.+.+.+.++++|...|+|+||||||++|+|+|++|+.+|.+++++ |+|++.+||+|||.||+||||+|+++|
T Consensus 5 ~~e~~~e~~~~~~~i~~dR~~~i~AaIVRIMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIekeYi~R~~~d 84 (92)
T d1iuya_ 5 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 84 (92)
T ss_dssp CCCCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSC
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhhhhcCCCC
Confidence 4455556677788899999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred CCceeecC
Q psy16234 602 TDEYSYVA 609 (609)
Q Consensus 602 ~~~y~Yia 609 (609)
+++|+|+|
T Consensus 85 ~~~y~Y~A 92 (92)
T d1iuya_ 85 RKVYTYVA 92 (92)
T ss_dssp SSEEEEC-
T ss_pred CCeeeeeC
Confidence 99999998
No 8
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=94.88 E-value=0.023 Score=42.60 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=43.6
Q ss_pred HHHHhhcCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEe
Q psy16234 450 AILLLFEKN-DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLN 506 (609)
Q Consensus 450 ~iLllFn~~-~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN 506 (609)
.||..|.+. .++|+.||++.+|+|...+.+.|..|.+.|++.+++ ++.|.+-
T Consensus 9 ~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~-----~g~y~lG 61 (75)
T d1mkma1 9 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKK-----DKRYVPG 61 (75)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECT-----TSCEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC-----CCCEeec
Confidence 477777754 579999999999999999999999999999998764 4456553
No 9
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=93.90 E-value=0.03 Score=41.35 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=40.1
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+.||-++-.+..+|..||++.+|++...+.+++..|++.|++...
T Consensus 8 ~~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~l~~L~~~Glv~e~ 53 (71)
T d1z05a1 8 AGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHET 53 (71)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3457766667789999999999999999999999999999998754
No 10
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=93.57 E-value=0.033 Score=44.91 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=47.1
Q ss_pred EEecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 442 VTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 442 l~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+-+|..|+.|+...-+.+..|..+|++.+|++...+.+.|..|.+.|++.+.
T Consensus 16 lGlt~~e~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~l~~L~~~GlV~r~ 67 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp TCCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCHHHHHHHhCCCcchHHHHHHHHHhCCCEEEE
Confidence 3467899999988888899999999999999999999999999999999653
No 11
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=93.05 E-value=0.072 Score=44.76 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 446 TFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 446 ~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
.+++.+.+..+....+|.++|++.+++|...+.+.|..|.++|+|....+ + +-|.+..
T Consensus 9 Av~~L~~la~~~~~~vss~~IA~~~~i~~~~l~kil~~L~~aGlv~S~rG---~-GG~~L~~ 66 (138)
T d1ylfa1 9 AVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG---P-GGAGLLK 66 (138)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-------CCEEESS
T ss_pred HHHHHHHHHhCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecC---C-CCceecC
Confidence 35667777777777899999999999999999999999999999975531 2 4466765
No 12
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=92.67 E-value=0.064 Score=38.07 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=39.2
Q ss_pred HHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 449 MAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 449 ~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
.-||.++.++..+|+.+|++.+|++...+...++.|.+.|++..
T Consensus 6 ~kIl~~L~~n~r~s~~~lA~~~gls~~~v~~Ri~~L~~~giI~~ 49 (60)
T d1i1ga1 6 KIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 49 (60)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 34677777778999999999999999999999999999999864
No 13
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=92.66 E-value=0.051 Score=45.70 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=46.4
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|+.|+.||......+++|..+|++.+|++...+.+.+..|.+.|++.+.
T Consensus 28 lt~~q~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~~L~~~gli~r~ 77 (139)
T d2a61a1 28 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRT 77 (139)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHhcCeeeee
Confidence 57899999999888889999999999999999999999999999999765
No 14
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=92.46 E-value=0.071 Score=38.22 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=42.4
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
.-.-..||..+.++...|+.+|++.+|+|...+...+..|.+.|++..
T Consensus 4 D~~D~~IL~~L~~~~r~s~~eiA~~l~ls~~~v~~Ri~rL~~~GiI~~ 51 (63)
T d2cg4a1 4 DNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 51 (63)
T ss_dssp CHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 344566888888889999999999999999999999999999999863
No 15
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=92.16 E-value=0.096 Score=37.52 Aligned_cols=48 Identities=10% Similarity=0.282 Sum_probs=42.1
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
+-.-.-||..+.++..+|+.+|++.+|++...+.+.++.|.+.|++..
T Consensus 4 D~~D~~IL~~L~~n~r~s~~~iA~~lgis~~tv~~Ri~~L~~~giI~~ 51 (63)
T d2cfxa1 4 DQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (63)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeee
Confidence 344556888888888999999999999999999999999999999863
No 16
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=92.14 E-value=0.095 Score=44.08 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=47.2
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|..|+.||..+.+.+.+|..+|++.++++...+.+.++.|++.|++.+.
T Consensus 33 ~lt~~q~~vL~~l~~~~~~t~~~la~~l~~~~~~vsr~l~~L~~~G~v~r~ 83 (141)
T d1lnwa_ 33 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRE 83 (141)
T ss_dssp CCCHHHHHHHHHHHSSTTCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCccHhHHHHHHHHHHHhhceeee
Confidence 357899999999988888999999999999999999999999999999765
No 17
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=91.90 E-value=0.057 Score=42.57 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=44.6
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
++.|..||.....++.+|+.+|++.+|++...+.++|..|.+.|++...
T Consensus 15 ~p~r~~IL~~L~~~~~~~~~eLa~~l~is~~~vs~~l~~L~~~glV~~~ 63 (100)
T d1ub9a_ 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTY 63 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHhccCCCeeHHHHHHHHhhccccccHHHHHHhhhceeEEE
Confidence 6788999988877788999999999999999999999999999999653
No 18
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=91.83 E-value=0.13 Score=36.36 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=40.9
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 447 FQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 447 ~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
.-.-||..+.++...|+.+|++.+|++...+...+..|.+.|++..
T Consensus 4 ~D~~Il~~L~~n~r~s~~eiA~~l~ls~~~v~~Ri~~L~~~giI~~ 49 (60)
T d2cyya1 4 IDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKK 49 (60)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 3456788888888999999999999999999999999999999864
No 19
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=91.58 E-value=0.047 Score=46.26 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=46.3
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|+.+|....+++.+|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 27 lt~~q~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~~L~~~glI~r~ 76 (144)
T d1lj9a_ 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCccHhhHHHHHHHHHhhhccccc
Confidence 56789999998888888999999999999999999999999999999765
No 20
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=91.26 E-value=0.1 Score=41.80 Aligned_cols=51 Identities=20% Similarity=0.398 Sum_probs=43.8
Q ss_pred EecHHHHHHHHhh-cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLF-EKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllF-n~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
-+|..|..||... ...+.+|..+|++.+|++...+.++|..|...|++.+.
T Consensus 18 gLs~~~~~iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~l~~L~~~GlV~r~ 69 (109)
T d2d1ha1 18 KITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHHHHHHHcCCCCCHHHHHHHHCccHhHHHHHHHHHHHCCCEEEe
Confidence 3577888888655 44567999999999999999999999999999999765
No 21
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=91.24 E-value=0.11 Score=37.53 Aligned_cols=56 Identities=11% Similarity=0.220 Sum_probs=48.7
Q ss_pred hhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q psy16234 547 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 609 (609)
Q Consensus 547 A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yia 609 (609)
+..|+..|.+|.+..++|-.+ |....++...+|..|.+.|-|.-.-+|+..|.||.
T Consensus 10 ~~FI~~Ik~~Kvv~LedLAa~-------F~lktqd~i~RIq~Le~~g~ltGViDDRGKfIyIS 65 (72)
T d1wi9a_ 10 TEFINYIKKSKVVLLEDLAFQ-------MGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHH-------HCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHHCCEeeHHHHHHH-------cCCcHHHHHHHHHHHHHCCCeeeEEcCCCCEEEEc
Confidence 345677799999999887744 88999999999999999999999888999999984
No 22
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=90.85 E-value=0.1 Score=43.76 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=47.1
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|..|+.||.....++.+|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 29 ~lt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~gli~r~ 79 (140)
T d2etha1 29 DMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 79 (140)
T ss_dssp HSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeee
Confidence 357889999999988889999999999999999999999999999999865
No 23
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=90.79 E-value=0.081 Score=44.25 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=47.0
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+|+.|..||......+.+|..+|++.++++...+.+.+..|.+.|++...+
T Consensus 31 Lt~~q~~vL~~l~~~~~~t~~~La~~~~i~~~~vsr~i~~L~~~glv~r~~ 81 (137)
T d1z91a1 31 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 81 (137)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred cCHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHhhccceEEee
Confidence 578899999988888899999999999999999999999999999998764
No 24
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=90.61 E-value=0.12 Score=41.75 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=45.0
Q ss_pred EecHHHHHHHHhhcC--CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 443 TMQTFQMAILLLFEK--NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~--~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
.+|..|..||..+.. .+.+|..+|++.++++...+.+.+..|.+.|++.+.+
T Consensus 30 ~Ls~~q~~vL~~l~~~~~~~~t~~~la~~l~~~~~tvs~~i~~Le~~gli~r~~ 83 (115)
T d2frha1 30 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKR 83 (115)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBC
T ss_pred CCCHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHhHHHHHHHHHHhhhhheeee
Confidence 357789999977744 4569999999999999999999999999999998764
No 25
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=89.55 E-value=0.4 Score=34.06 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=39.7
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 447 FQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 447 ~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
.+.-||.+++++..+|.++|++.+|++...+.+.+..|-+.|+.+.
T Consensus 6 ~~~~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~i~~L~~~G~~I~ 51 (63)
T d1biaa1 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVF 51 (63)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCCcEE
Confidence 3445777778888999999999999999999999999999997543
No 26
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=89.43 E-value=0.27 Score=35.80 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=40.6
Q ss_pred HHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 449 MAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 449 ~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
..||-+.-.+..+|-.||++.||++...+.+++..|++.|++...
T Consensus 8 ~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~~L~~~glv~e~ 52 (70)
T d1z6ra1 8 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQEL 52 (70)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 457777778899999999999999999999999999999998754
No 27
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=89.25 E-value=0.12 Score=43.43 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=45.9
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|+.|..||......+..|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 33 lt~~q~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~l~~L~~~glv~r~ 82 (143)
T d1s3ja_ 33 VTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIART 82 (143)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHhhhheee
Confidence 46789999988888888999999999999999999999999999999764
No 28
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=89.12 E-value=0.11 Score=42.85 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=44.6
Q ss_pred EecHHHHHHHHhh--cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLF--EKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllF--n~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|..|+.||..+ ++.+++|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 31 ~Lt~~q~~iL~~l~~~~~~~~t~~eia~~~~~~~~~vs~~l~~L~~~g~v~r~ 83 (125)
T d1p4xa1 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (125)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred CCCHHHHHHHHHHHHhccCCcCHHHHHHHhCCCcchHHHHHHHHHHCCCceee
Confidence 3678899999776 34457999999999999999999999999999999765
No 29
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=89.05 E-value=0.2 Score=41.15 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=44.6
Q ss_pred EecHHHHHHHHhhc--CCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFE--KNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn--~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|..|..||..+. +.+.+|..+|++.+|++...+.+.+..|.+.|++.+.
T Consensus 30 ~Ls~~q~~vL~~l~~~~~~~~~~~~ia~~l~~~~~~vs~~v~~L~~~glV~r~ 82 (125)
T d1p4xa2 30 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKE 82 (125)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEE
T ss_pred CCCHHHHHHHHHHHHccCCCccHHHHHHHHCCCcchHHHHHHHHHhccCEeee
Confidence 46778999997774 4567999999999999999999999999999999765
No 30
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=88.78 E-value=0.15 Score=42.50 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=45.8
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..+|..+..++.+|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 32 Lt~~q~~vL~~l~~~~~~t~~ela~~~~i~~~~vs~~v~~L~~~glv~r~ 81 (138)
T d1jgsa_ 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHhHHhCcCCCHHHHHHHHCCCHhHHHHHHHHHhhCCCEEEe
Confidence 46789999988888789999999999999999999999999999999765
No 31
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=88.75 E-value=0.16 Score=42.22 Aligned_cols=50 Identities=8% Similarity=0.122 Sum_probs=46.3
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|..|..||.....++.+|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 28 lt~~q~~vL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~ 77 (136)
T d2fbia1 28 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRW 77 (136)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 67789999988888889999999999999999999999999999999765
No 32
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=88.74 E-value=0.13 Score=44.45 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=46.9
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|..|+.||.....++++|..+|++.++++...+.+.+..|.+.|++.+.
T Consensus 38 ~Lt~~q~~vL~~l~~~~~~t~~~la~~~~l~~~tvs~~i~rL~~~gli~r~ 88 (162)
T d2fxaa1 38 DLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFS 88 (162)
T ss_dssp TCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHhhhccCCCcCHHHHHHHHcCCchhhHHHHHHHHHCCCceee
Confidence 357789999999988889999999999999999999999999999999765
No 33
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=88.50 E-value=0.41 Score=40.16 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=38.3
Q ss_pred HHHHHHH--HhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 446 TFQMAIL--LLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 446 ~~Q~~iL--llFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
..++-|+ +.++ .+++|..||++.+|++...+.+.|..|.+.|++.+.
T Consensus 26 ~~~~~i~~~L~~~-~~plt~~ela~~l~vsk~~vs~~l~~L~~~GlV~r~ 74 (151)
T d1ku9a_ 26 KSVGAVYAILYLS-DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (151)
T ss_dssp HHHHHHHHHHHHC-SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHhCCCcchHHHHHHHHHHCCCEEEE
Confidence 4455555 3344 456999999999999999999999999999999754
No 34
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=88.46 E-value=0.26 Score=40.67 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=44.0
Q ss_pred EecHHHHHHHHhhcCC--CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKN--DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~--~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
-+|..|+.||..+..+ ..+|..+|++.++++...+.+.++.|.+.|++.+.
T Consensus 26 glt~~q~~vL~~l~~~~~~~it~~ela~~~~~~~~~vs~~l~~L~~~g~v~r~ 78 (135)
T d3broa1 26 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK 78 (135)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCCCHHHHHHHHCcCHhHHHHHHHHHHHHHHHHHH
Confidence 3678899988766654 45999999999999999999999999999999754
No 35
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=88.41 E-value=0.23 Score=40.05 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=43.9
Q ss_pred ecHHHHHHHHhh--cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 444 MQTFQMAILLLF--EKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 444 ~s~~Q~~iLllF--n~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+|..|..||..+ ++.+.+|..+|++.++++...+.+.+..|.+.|++.+.+
T Consensus 30 Lt~~q~~vL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~i~~Le~~gli~r~~ 82 (115)
T d1hsja1 30 LNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKR 82 (115)
T ss_dssp CCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEE
T ss_pred CCHHHHHHHHHHHccCCCCcCHHHHHHHHCCChhhHHHHHHHHHHcCCeEEEe
Confidence 667888888544 456789999999999999999999999999999998753
No 36
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=88.39 E-value=0.54 Score=38.40 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecC
Q psy16234 447 FQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLG 508 (609)
Q Consensus 447 ~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~ 508 (609)
.++.+.+.- +..+|.++|++.+|+|...+++.|..|.++||+.... +. ++.| ++.+
T Consensus 7 v~~L~~la~--~~~~ss~~IA~~~~~~~~~v~kIl~~L~~aglV~s~r-G~--~GGy-Lar~ 62 (127)
T d1xd7a_ 7 IHILSLISM--DEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRA-GV--PGAS-LKKD 62 (127)
T ss_dssp HHHHHHHHT--CSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCS-SS--SSCE-ESSC
T ss_pred HHHHHHHhc--CCCCCHHHHHHHhCcCHHHHHHHHHHHHHhCcccccC-CC--CCcc-ccCC
Confidence 455445544 4569999999999999999999999999999987542 22 2336 7653
No 37
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=88.14 E-value=0.31 Score=36.96 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 458 NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 458 ~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
..+.|++||++.+|++++.+.+.|..|+..|++...+ ++.|..+.
T Consensus 32 ~gp~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e~~-----~~~y~lt~ 76 (85)
T d1tw3a1 32 AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA-----PGEFVPTE 76 (85)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE-----TTEEEECT
T ss_pred cCCCCHHHHHHHhCcChhHHHHHHHHHHHCCCeEecC-----CCeEecCH
Confidence 4679999999999999999999999999999997653 46777653
No 38
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.49 E-value=0.42 Score=34.62 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=42.2
Q ss_pred ecHHHHHHHHhhcC---CCCCCHHHHHHHh-CCCHHHHHHHHHHHHhcCcccc
Q psy16234 444 MQTFQMAILLLFEK---NDAMTCGDIQTVL-SLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 444 ~s~~Q~~iLllFn~---~~~lt~~ei~~~t-~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
+|+.|..|+-++.. ...+++++|+..+ |+|...++.++..|+..|.+-.
T Consensus 4 Ls~~q~~V~~~i~s~~~~eGi~~~el~~~l~~~~~~~i~~aid~L~~eG~IYs 56 (69)
T d1dpua_ 4 LTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYS 56 (69)
T ss_dssp SCHHHHHHHHHHHHCCCTTTEEHHHHHHHSTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHhCCCccCcCHHHHHHHccCCCHHHHHHHHHHHHhCCceec
Confidence 47889999988874 3569999999988 8999999999999999998753
No 39
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=87.14 E-value=0.15 Score=42.43 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=46.3
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|+.|..||.....++.+|..+|++.++++...+.+.+..|++.|++.+.
T Consensus 32 lt~~q~~vL~~i~~~~~~t~~~la~~l~~~~~~~s~~l~~L~~~Gli~r~ 81 (136)
T d2bv6a1 32 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRE 81 (136)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEEe
Confidence 57899999988888889999999999999999999999999999999765
No 40
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=87.11 E-value=0.32 Score=40.75 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=44.2
Q ss_pred EecHHHHHHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 443 TMQTFQMAILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
-+|..|+.||..+.. .+.+|..+|++.+|++...+.+.+..|.+.|++.+.+
T Consensus 31 glt~~q~~vL~~L~~~~g~~t~~~La~~~~~~~~~vs~~i~~L~~~glv~r~~ 83 (145)
T d2hr3a1 31 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHA 83 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCeEeee
Confidence 356788888877743 3579999999999999999999999999999997653
No 41
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
Probab=86.90 E-value=0.3 Score=36.76 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=48.2
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 609 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yia 609 (609)
.+..|++++=.++.++..+++..+.+. .......|..-|..|.+||||.|... ...|.|-|
T Consensus 10 ~E~~IM~~lW~~~~~t~~ei~~~l~~~---~~~~~tTv~T~L~rL~~KG~l~~~k~-gr~~~Y~p 70 (82)
T d1p6ra_ 10 AELEVMKVIWKHSSINTNEVIKELSKT---STWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYTP 70 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHhccc---cCCcHhHHHHHHHHHHHCCCeEEEec-CCeEEEEe
Confidence 356788888888889888877666443 55678999999999999999998765 46788854
No 42
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=86.79 E-value=0.32 Score=40.43 Aligned_cols=51 Identities=10% Similarity=0.149 Sum_probs=44.8
Q ss_pred ecHHHHHHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 444 MQTFQMAILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 444 ~s~~Q~~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+|..|..+|....+ ++.+|..+|++.++++...+.+.+..|.+.|++...+
T Consensus 29 lt~~~~~~L~~l~~~~~~~t~~~la~~l~i~~~~vs~~l~~L~~~glI~~~~ 80 (140)
T d3deua1 29 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 80 (140)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCccHHHHHHHHCCCHhHHHHHHHHHHhCCCEEecc
Confidence 56789999988765 5679999999999999999999999999999997653
No 43
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=86.69 E-value=0.49 Score=37.57 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 446 TFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 446 ~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
+.-..||......+.+++.+|++.+|++...+-.+|..|..+||+.... -+..-.|++|.
T Consensus 31 p~Rl~Il~~L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~~aGlv~~~r--~G~~~~Y~l~~ 90 (108)
T d1u2wa1 31 ENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRK--EGKLALYSLGD 90 (108)
T ss_dssp HHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC------CCEEEESC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHccChhHHHHHHHHHHHCCeeEEEE--ECCEEEEEECH
Confidence 3445566555445679999999999999999999999999999997542 01123566654
No 44
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=86.02 E-value=0.36 Score=34.18 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=32.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-.||++.+|++...+.+++..|++.|++...
T Consensus 12 pisr~eLa~~~gls~~TVs~~v~~L~~~GlV~e~ 45 (62)
T d2hoea1 12 PVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEE 45 (62)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEC
Confidence 5899999999999999999999999999999754
No 45
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=85.64 E-value=0.31 Score=40.28 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=43.2
Q ss_pred ecHHHHHHHHhhc-CCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 444 MQTFQMAILLLFE-KNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 444 ~s~~Q~~iLllFn-~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+|..|..||.... ..+.+|..+|++.++++...+.+.+..|++.|++.+.+
T Consensus 26 lt~~q~~iL~~l~~~~~~~t~~~la~~~~~~~~~vs~~v~~L~~~gli~r~~ 77 (137)
T d2fbha1 26 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 77 (137)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHHHHHcCCccccC
Confidence 4567888886665 34579999999999999999999999999999998653
No 46
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=84.13 E-value=0.6 Score=32.88 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=36.2
Q ss_pred HHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 451 ILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 451 iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
|..+-.++...+..+|++.+|++...+...+..|.+.|++...+
T Consensus 12 I~~l~~~~~~v~~~~iA~~L~vs~~SVs~mikrL~~~GlV~~~~ 55 (61)
T d2ev0a1 12 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEK 55 (61)
T ss_dssp HHHHHHHHSSCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHhcCCCccHHHHHHHhCCCchhHHHHHHHHHHCCCEEEcc
Confidence 33333456789999999999999999999999999999998765
No 47
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=83.86 E-value=0.92 Score=32.18 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=38.4
Q ss_pred HHHHHhhcCC--CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 449 MAILLLFEKN--DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 449 ~~iLllFn~~--~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.-|.-.|.++ .+.++.||++.+|++++.+...|.-|++.|.|++.
T Consensus 10 ~~I~~~~~~~g~~PP~vrdl~~~l~~~e~~~~~lL~~l~~~G~lvkI 56 (64)
T d1lvaa3 10 KDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKI 56 (64)
T ss_dssp HHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3456667653 67899999999999999999999999999998875
No 48
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=82.52 E-value=1.1 Score=31.55 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=37.6
Q ss_pred HHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 451 ILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 451 iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
|..+-.+++..+..+|++.+|++...+..++..|.+.|++...+
T Consensus 14 I~~L~~~~~~v~~~~iA~~L~vs~~SVt~mvkrL~~~Glv~~~~ 57 (63)
T d2isya1 14 IYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAG 57 (63)
T ss_dssp HHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred HHHHHhcCCCCcHHHHHHHhCCCchhHHHHHHHHHHCCCEEEcC
Confidence 33344456789999999999999999999999999999998764
No 49
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=82.33 E-value=0.86 Score=32.38 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=34.9
Q ss_pred HHHHHHhhcC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCc
Q psy16234 448 QMAILLLFEK-NDAMTCGDIQTVLSLSQDQIGRHIASLVECKL 489 (609)
Q Consensus 448 Q~~iLllFn~-~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~i 489 (609)
+..||.++.+ ...+|.++|++.+|++...+.+.|..|-..|+
T Consensus 9 ~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~L~~~G~ 51 (65)
T d1j5ya1 9 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGY 51 (65)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 3456655544 45799999999999999999999999988886
No 50
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=82.17 E-value=0.5 Score=38.19 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=47.2
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 609 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yia 609 (609)
+..|++++=..+.++-.+++..+... ..++...+...+..|.+||||.|..+ ...|.|.|
T Consensus 9 E~~VM~~lW~~~~~t~~ei~~~l~~~---~~~~~sTv~t~L~rL~~Kg~l~r~~~-gr~~~Y~~ 68 (120)
T d1okra_ 9 EWEVMNIIWMKKYASANNIIEEIQMQ---KDWSPKTIRTLITRLYKKGFIDRKKD-NKIFQYYS 68 (120)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHTSEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHhcc---cCccHHhHHHHHHHHHHCCCeEEEec-CCceEEee
Confidence 34566666677888888888666543 56889999999999999999999875 47888865
No 51
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=81.43 E-value=0.87 Score=32.63 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=38.8
Q ss_pred HHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 451 ILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 451 iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
++.....++..|..+|+..+|++..++.++|-+|.+.|.+.+.+
T Consensus 15 ~l~~L~~~~~~tA~~LAk~Lg~~Kk~VNr~LY~L~~~G~v~~~~ 58 (70)
T d1sfua_ 15 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVP 58 (70)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHhcCCCCCchHHHHHHHhCCCHHHHHHHHHHHHHCCCeecCC
Confidence 45566678899999999999999999999999999999887764
No 52
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=80.97 E-value=1.1 Score=39.04 Aligned_cols=48 Identities=27% Similarity=0.394 Sum_probs=40.9
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
.++.-.-||.++. ..++|+.+|++.+|++...+.+||..|.+.|++..
T Consensus 17 ~~p~R~~Il~~L~-~~~~s~~ela~~lg~s~~~v~~hl~~L~~~glv~~ 64 (190)
T d1ulya_ 17 LEDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEV 64 (190)
T ss_dssp HSHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 3555667787775 46799999999999999999999999999999854
No 53
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=80.78 E-value=1.4 Score=31.82 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=40.8
Q ss_pred ecHHHHHHHHhhcC-----CCCCCHHHHHHHhCC-CHHHHHHHHHHHHhcCccccCC
Q psy16234 444 MQTFQMAILLLFEK-----NDAMTCGDIQTVLSL-SQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 444 ~s~~Q~~iLllFn~-----~~~lt~~ei~~~t~i-~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+|.-|.-||....+ +-+-|+.||++.+|+ +...+..+|..|.+.|.|.+.+
T Consensus 3 LT~rQ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~r~~ 59 (71)
T d1jhfa1 3 LTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVS 59 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECS
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHCcCeecCC
Confidence 34556666655442 456899999999999 6899999999999999998864
No 54
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=78.92 E-value=1 Score=33.92 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=35.5
Q ss_pred HHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 452 LLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 452 LllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
+..-++...+|..+|++.++++...+.++|..|.+.|++..
T Consensus 13 ~~~~~~~~~lt~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r 53 (85)
T d3ctaa1 13 AAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITR 53 (85)
T ss_dssp HTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred hhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeee
Confidence 33344556899999999999999999999999999999975
No 55
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=78.31 E-value=2 Score=33.16 Aligned_cols=43 Identities=19% Similarity=0.453 Sum_probs=36.2
Q ss_pred HHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 450 AILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.||....+ ...++.+|++.+|++...+-.+|..|.++||+...
T Consensus 27 ~Il~~L~~-~~~~v~ela~~l~is~stvS~HL~~L~~aglV~~~ 69 (98)
T d1r1ta_ 27 RLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYR 69 (98)
T ss_dssp HHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEE
Confidence 45555544 45899999999999999999999999999999654
No 56
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=76.57 E-value=1.9 Score=32.96 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=36.4
Q ss_pred HHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 449 MAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 449 ~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
..||.+..+ .++++.||++.+|++...+-++|..|.++||+...
T Consensus 21 l~Il~~L~~-~~~~v~el~~~l~~s~~~vS~HL~~L~~~glv~~~ 64 (94)
T d1r1ua_ 21 IRIMELLSV-SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAK 64 (94)
T ss_dssp HHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc-CCccHHHHHHHHCCCHHHHHHHHHHHHHCCceEEE
Confidence 345544444 46899999999999999999999999999999654
No 57
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=76.39 E-value=0.97 Score=36.55 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=44.4
Q ss_pred hhhhhhhhhhcccc-CCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q psy16234 544 YLQAAIVRIMKSRK-QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 609 (609)
Q Consensus 544 ~i~A~IVRiMK~~k-~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yia 609 (609)
-.+..|++++=..+ .++..+++..+.+. .++....+...+..|.+||||.|... ...|.|-|
T Consensus 7 ~~E~~IM~~lW~~g~~~t~~eI~~~l~~~---~~~~~sTV~T~L~rL~~Kg~l~~~~~-gr~~~Y~~ 69 (122)
T d2g9wa1 7 DLERAVMDHLWSRTEPQTVRQVHEALSAR---RDLAYTTVMAVLQRLAKKNLVLQIRD-DRAHRYAP 69 (122)
T ss_dssp HHHHHHHHHHHTCSSCEEHHHHHHHHTTT---CCCCHHHHHHHHHHHHHTTSEEEEC----CCEEEE
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHhcc---CCCcHHHHHHHHHHHHHCCCEEEeec-CCeEEEEe
Confidence 35667777776654 57877776554322 56788999999999999999999865 46788854
No 58
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}
Probab=74.93 E-value=1.4 Score=33.74 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 458 NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 458 ~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
....|.++|++.+|++..-+.+.|..|+..||+.+..
T Consensus 38 ~gp~t~~eLA~~~g~~~~~l~rLlr~L~a~gll~~~~ 74 (92)
T d1qzza1 38 AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGE 74 (92)
T ss_dssp TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCC
T ss_pred CCCCCHHHHHHHHCcCchHHHHHHHHHHHCCCeeeec
Confidence 4689999999999999999999999999999998763
No 59
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=74.54 E-value=2.1 Score=29.72 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=40.2
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
++-.|++.+.....++..+|-.. + ..+.+.+..+|..|.+.|+|.|-.
T Consensus 4 ~D~kIl~~L~~n~r~s~~~lA~~----~---gls~~~v~~Ri~~L~~~giI~~~~ 51 (60)
T d1i1ga1 4 RDKIILEILEKDARTPFTEIAKK----L---GISETAVRKRVKALEEKGIIEGYT 51 (60)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHH----H---TSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH----H---CcCHHHHHHHHHHHHHCCCeEeEE
Confidence 56778999999999999877644 3 368999999999999999998754
No 60
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=71.41 E-value=3.7 Score=29.42 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=39.9
Q ss_pred hhhhhhhhhhhhhcccc-CCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q psy16234 541 RKLYLQAAIVRIMKSRK-QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 605 (609)
Q Consensus 541 R~~~i~A~IVRiMK~~k-~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y 605 (609)
|+..|=.+|++..+.++ .-+..+| .+.+. |. +...+...|+.|.++|||+|.++.+-.+
T Consensus 6 rQ~~vL~~I~~~~~~~G~~Ps~rei----~~~~g-~~-S~stv~~~l~~Le~kG~I~r~~~~~R~i 65 (71)
T d1jhfa1 6 RQQEVFDLIRDHISQTGMPPTRAEI----AQRLG-FR-SPNAAEEHLKALARKGVIEIVSGASRGI 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHH----HHHTT-CS-SHHHHHHHHHHHHHTTSEEECSSSSSCE
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHH----HHHcC-CC-CHHHHHHHHHHHHHCcCeecCCCCCcee
Confidence 44445556666666654 4555544 34443 43 7888999999999999999988654433
No 61
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=70.64 E-value=1.5 Score=35.28 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=45.2
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 609 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yia 609 (609)
+.-|+++.=..+.++..+++..+.+. .+.....+..-+..|.+||||.|... ...|.|-|
T Consensus 8 E~~VM~~lW~~~~~t~~ei~~~l~~~---~~~~~tTv~T~L~rL~~Kg~l~~~~~-gr~~~Y~~ 67 (122)
T d1sd4a_ 8 EWDVMNIIWDKKSVSANEIVVEIQKY---KEVSDKTIRTLITRLYKKEIIKRYKS-ENIYFYSS 67 (122)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHTT---SCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhhcc---CCCcHhHHHHHHHHHHhhhceeeecc-CCeEEEee
Confidence 34466666667788888777555332 66789999999999999999998754 47888854
No 62
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.28 E-value=3.6 Score=28.04 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=35.6
Q ss_pred hcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 455 FEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 455 Fn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
..+.+..|..+|+..++++..++.+.|-+|.+.|-|.+.+
T Consensus 11 lg~~~~~tA~~LA~kl~vpKk~iNr~LYsL~~kgkl~k~~ 50 (59)
T d2gxba1 11 LGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 50 (59)
T ss_dssp HCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCccchhHHHHHHHhCCcHHHHHHHHHHHHHccchhhcC
Confidence 3457899999999999999999999999999998887654
No 63
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=69.43 E-value=2.9 Score=29.17 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=39.9
Q ss_pred hhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccc
Q psy16234 544 YLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVER 597 (609)
Q Consensus 544 ~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r 597 (609)
.++..|++.+.....++..+|-.. + ..+...+..+|+.|.++|.|.+
T Consensus 5 ~~D~~IL~~L~~~~r~s~~eiA~~----l---~ls~~~v~~Ri~rL~~~GiI~~ 51 (63)
T d2cg4a1 5 NLDRGILEALMGNARTAYAELAKQ----F---GVSPETIHVRVEKMKQAGIITG 51 (63)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHH----H---TSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHH----H---CcCHHHHHHHHHHHHHCCCeEe
Confidence 357789999999999999877544 3 4789999999999999999986
No 64
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.21 E-value=5.5 Score=28.32 Aligned_cols=57 Identities=11% Similarity=0.112 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCCCCCCCCCEEEEecCCC
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLGYN 510 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~~F~ 510 (609)
.-.|.-+|.++..||+.+|.+.|.=|...|+.+|..+. ++.+.+ .-.+.+++-.+|.
T Consensus 10 ~d~lF~~Fek~~ywsiK~L~~~t~QP~~yLKeiL~eIa---~~~~~g---~~~~~weLKpEYr 66 (69)
T d2bbya_ 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG---VQNVKG---IHKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC---CEECCT---TCCCEECCCCSSC
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHhChHHHHHHHHHHHH---HHHcCC---CcCCceeCCHHHh
Confidence 44577899999999999999999999999999999865 444442 1235566665553
No 65
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=69.01 E-value=3.1 Score=29.51 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=31.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-+||++.+|++.+.+.+.|..|.+.|++..+
T Consensus 29 ~lt~~~lA~~~G~sRetvsr~L~~l~~~glI~~~ 62 (69)
T d1i5za1 29 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 62 (69)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEc
Confidence 3899999999999999999999999999999765
No 66
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=68.73 E-value=3.9 Score=29.58 Aligned_cols=38 Identities=8% Similarity=0.194 Sum_probs=34.4
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 457 KNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 457 ~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
.++.+ |..+|++..|++...+.+++..|...|+|...+
T Consensus 23 ~G~~LPs~~eLa~~~~vSr~tvr~Al~~L~~~G~i~~~~ 61 (74)
T d1hw1a1 23 PGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH 61 (74)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEe
Confidence 35678 899999999999999999999999999998764
No 67
>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}
Probab=68.53 E-value=5 Score=28.87 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=37.7
Q ss_pred HHHHHHHhhcC------CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccc
Q psy16234 447 FQMAILLLFEK------NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 447 ~Q~~iLllFn~------~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
.=.+||.+..+ ...||+..|++..++|-..|+|.|..|...|+..
T Consensus 5 ~lvavL~~L~eA~~e~~g~~WSLaklsKra~~PMS~LRR~LTqL~~aGl~~ 55 (81)
T d2obpa1 5 AIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLAD 55 (81)
T ss_dssp HHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhccCCCCCccHHHHHhhcCCcHHHHHHHHHHHhhcCcee
Confidence 33466766664 3579999999999999999999999999999864
No 68
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=67.68 E-value=3.6 Score=28.30 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=41.0
Q ss_pred hhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 544 YLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 544 ~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
.++..|++.|...-.++..+|-.. + ..+...+..+|..|.+.|.|.|-.
T Consensus 3 ~~D~~Il~~L~~n~r~s~~eiA~~----l---~ls~~~v~~Ri~~L~~~giI~~~~ 51 (60)
T d2cyya1 3 EIDKKIIKILQNDGKAPLREISKI----T---GLAESTIHERIRKLRESGVIKKFT 51 (60)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHH----H---CSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHH----H---CcCHHHHHHHHHHHHHCCCeEeEE
Confidence 357789999999999999877644 3 478999999999999999999754
No 69
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=66.77 E-value=4 Score=29.40 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=31.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+.+.|..|.+.|++...
T Consensus 27 ~lt~~elA~~lg~sr~tvsr~l~~l~~~g~I~~~ 60 (73)
T d1zyba1 27 KVKMDDLARCLDDTRLNISKTLNELQDNGLIELH 60 (73)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEE
T ss_pred ecCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 4788999999999999999999999999999754
No 70
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=66.44 E-value=3.9 Score=35.49 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=43.3
Q ss_pred HHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC---CCCCCCCEEEEecCC
Q psy16234 450 AILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK---EELTEDTEIRLNLGY 509 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~---~~~~~~~~f~lN~~F 509 (609)
.||-+..+ .+.|+.+|++.+|++...+.+||..|.+.||+.... +.-.+...|.++.+.
T Consensus 19 ~Il~~L~~-~~~~~~ela~~l~~s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~ 80 (194)
T d2p4wa1 19 RILFLLTK-RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (194)
T ss_dssp HHHHHHHH-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccc
Confidence 45544433 579999999999999999999999999999996432 111334567776653
No 71
>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}
Probab=65.86 E-value=4.1 Score=31.52 Aligned_cols=43 Identities=12% Similarity=0.306 Sum_probs=35.9
Q ss_pred HHHHhhcCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHhcCccccC
Q psy16234 450 AILLLFEKNDAMTCGDIQTVL-SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t-~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.||..... +...+.||.+.+ |++...|...|..|...||+.+.
T Consensus 24 ~Il~~L~~-g~~rF~el~~~l~gIs~~~Ls~rLkeL~~~glv~r~ 67 (102)
T d2fswa1 24 LIIFQINR-RIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKK 67 (102)
T ss_dssp HHHHHHTT-SCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcc-CCCCHHHHHhhCcccchhHHHHHHHHHHHCCceeec
Confidence 45544443 568999999996 99999999999999999999765
No 72
>d2htja1 a.4.5.73 (A:1-73) P fimbrial regulatory protein PapI {Escherichia coli [TaxId: 562]}
Probab=65.80 E-value=3.4 Score=28.63 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=40.5
Q ss_pred HHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 450 AILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
-||--||+.++-+..||++++|++.-..+--|..|-+.|-+..+|
T Consensus 4 ~Il~fl~~~~~~~T~EIAea~gvsaYQARyYL~~Lekegki~RsP 48 (73)
T d2htja1 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSP 48 (73)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHhcCCccHHHHHHHhhhHHHHHHHHHHHHHHhcCcccCh
Confidence 478888999888999999999999999999999999988888776
No 73
>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=65.72 E-value=5.4 Score=32.80 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
-+.||..... ....++||.+.+|++...|...|..|.+.||+.+
T Consensus 22 ~l~Il~~l~~-G~~rf~el~~~lgis~~vLs~rL~~L~~~gLv~r 65 (142)
T d2f2ea1 22 SMLIVRDAFE-GLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVA 65 (142)
T ss_dssp HHHHHHHHHT-TCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHhhccHHHHHHHHHHHHHhcceee
Confidence 3445544444 4689999999999999999999999999999865
No 74
>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=65.50 E-value=1.9 Score=33.54 Aligned_cols=47 Identities=11% Similarity=0.264 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHhCCCH---HHHHHHHHHHHhcCccccCCCCCCCCCEEEEec
Q psy16234 458 NDAMTCGDIQTVLSLSQ---DQIGRHIASLVECKLLTSNKEELTEDTEIRLNL 507 (609)
Q Consensus 458 ~~~lt~~ei~~~t~i~~---~~l~~~L~~L~~~~iL~~~~~~~~~~~~f~lN~ 507 (609)
...+|.+||++.++++. ..+.+.|..|+..||+...+ .+++.|..+.
T Consensus 42 ~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~---~~~~~Y~lt~ 91 (101)
T d1fp2a1 42 GKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIIT---KEEESYALTV 91 (101)
T ss_dssp TSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEE---SSSEEEEECH
T ss_pred CCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeec---CCCCeEecCH
Confidence 35799999999999864 55889999999999996532 1235676653
No 75
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=65.06 E-value=4.2 Score=28.30 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=40.1
Q ss_pred hhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 544 YLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 544 ~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
.++..|.+++.....++..+|-..+ ..+.+.+..+|..|.+.|+|.+-
T Consensus 5 ~~D~~IL~~L~~n~r~s~~~iA~~l-------gis~~tv~~Ri~~L~~~giI~~~ 52 (63)
T d2cfxa1 5 QIDLNIIEELKKDSRLSMRELGRKI-------KLSPPSVTERVRQLESFGIIKQY 52 (63)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCeeeE
Confidence 4677899999999999988776543 36789999999999999999873
No 76
>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}
Probab=65.02 E-value=5.7 Score=30.16 Aligned_cols=44 Identities=9% Similarity=0.227 Sum_probs=36.5
Q ss_pred HHHHHhhcCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHhcCccccC
Q psy16234 449 MAILLLFEKNDAMTCGDIQTVL-SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 449 ~~iLllFn~~~~lt~~ei~~~t-~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+.||..... ....+.||.... |++...|...|..|...|++.+.
T Consensus 14 l~Il~~L~~-g~~rF~el~~~l~gis~~~Ls~rLk~Le~~glv~r~ 58 (95)
T d2hzta1 14 CVILCHLTH-GKKRTSELKRLMPNITQKMLTQQLRELEADGVINRI 58 (95)
T ss_dssp HHHHHHHTT-CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHc-CCCCHHHHHHHhhcCChhHHHHHHHHHHHhHHHhhe
Confidence 456655544 467899999996 99999999999999999999765
No 77
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=64.51 E-value=4.4 Score=29.50 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=31.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-+||+..+|++.+.+.+.|..|.+.|++...
T Consensus 29 ~lt~~eLA~~~G~sretvsr~L~~l~~~glI~~~ 62 (81)
T d2gaua1 29 YLSREELATLSNMTVSNAIRTLSTFVSERMLALD 62 (81)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 5899999999999999999999999999998754
No 78
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=63.89 E-value=1.6 Score=37.43 Aligned_cols=51 Identities=14% Similarity=0.250 Sum_probs=42.3
Q ss_pred ecHHHHHHHHhhc---CCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 444 MQTFQMAILLLFE---KNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 444 ~s~~Q~~iLllFn---~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+|..|..||...- ..+.+|..+|++.++++...+.+.+..|.+.|++.+.+
T Consensus 60 Lt~~q~~vL~~L~~~~~~~~lt~~eLa~~l~i~~~tvsr~l~~Le~~GlV~r~~ 113 (172)
T d2fbka1 60 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRE 113 (172)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred CCHHHHHHHHHHHhhCCCCCcCHHHHHHHHCcCHhHHHHHHHHHHhCCCeeeec
Confidence 4567877776542 34569999999999999999999999999999998763
No 79
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=63.01 E-value=3.8 Score=29.89 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=31.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|+..+|++.+.+.+.|..|.+.|++...
T Consensus 30 ~lt~~elA~~~g~sretvsr~l~~l~~~glI~~~ 63 (80)
T d3e5ua1 30 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKK 63 (80)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 5899999999999999999999999999998654
No 80
>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.11 E-value=5.7 Score=29.00 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=38.6
Q ss_pred cHHHHHHHHhhcC--CCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 445 QTFQMAILLLFEK--NDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 445 s~~Q~~iLllFn~--~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+..+..|.-+..+ ...+...+|...||++...+.++|.+|...+++...
T Consensus 12 ~~~E~lVY~~I~~ag~~GIW~~dir~ktnL~~~~l~K~LK~Lesk~lIK~V 62 (78)
T d2dk5a1 12 DNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 62 (78)
T ss_dssp CSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHccccceeHHHHHHHcCCCHHHHHHHHHHHHhcCCceee
Confidence 3345555555443 467899999999999999999999999998888643
No 81
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=61.72 E-value=2.4 Score=33.19 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=43.1
Q ss_pred hhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC--CCCCceeec
Q psy16234 544 YLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA--NSTDEYSYV 608 (609)
Q Consensus 544 ~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~--~~~~~y~Yi 608 (609)
.-|+.|...+-.+..++-.+|.. .+ ..+.+.+-..|+.|.++||++|.. ++...|.|.
T Consensus 20 ~~e~~v~~~L~~~g~~t~~eia~----~~---~i~~~~v~~~l~~L~~~GlV~r~~~~~~~r~~~~~ 79 (109)
T d1sfxa_ 20 PSDVRIYSLLLERGGMRVSEIAR----EL---DLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYS 79 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHH----HH---TCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCHHHHHH----Hh---CCCcchHHHHHHHHHhCCCEEEEeccCCCcccccc
Confidence 45777777777788888876653 33 477899999999999999999853 344455554
No 82
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=61.50 E-value=3 Score=33.19 Aligned_cols=51 Identities=10% Similarity=0.150 Sum_probs=44.9
Q ss_pred EecHHHHHHHHhhcCCCCCCHHHHHHHh----CCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKNDAMTCGDIQTVL----SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~~~lt~~ei~~~t----~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|..|..|+..+=+.+.+|..||.+.+ +++...+...|..|.+.|+|...
T Consensus 4 ~lt~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~r~ 58 (120)
T d1okra_ 4 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 58 (120)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhcccCccHHhHHHHHHHHHHCCCeEEE
Confidence 4678899999888777899999998887 79999999999999999999764
No 83
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=59.66 E-value=13 Score=26.78 Aligned_cols=40 Identities=10% Similarity=0.215 Sum_probs=35.6
Q ss_pred hcCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 455 FEKNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 455 Fn~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
+...+.+ |..+|++..|++...+.++|..|...|+|...+
T Consensus 16 l~~G~~LPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~ 56 (78)
T d3bwga1 16 LQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVR 56 (78)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 4456778 999999999999999999999999999998764
No 84
>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}
Probab=59.13 E-value=5.2 Score=31.59 Aligned_cols=46 Identities=13% Similarity=0.296 Sum_probs=37.9
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHhcCccccC
Q psy16234 447 FQMAILLLFEKNDAMTCGDIQTVL-SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 447 ~Q~~iLllFn~~~~lt~~ei~~~t-~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+-+.||..... +...+.||...+ |++...|.+.|..|...|++.+.
T Consensus 25 W~l~Il~~L~~-g~~RF~el~~~l~gis~~~Ls~rL~~Le~~glv~R~ 71 (114)
T d1yyva1 25 WGVLILVALRD-GTHRFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRV 71 (114)
T ss_dssp HHHHHHHHGGG-CCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CHHHHHHHHhc-CCCCHHHHHHHccccchhHHHHHHHHHHHHHHHhhc
Confidence 34456655554 467899999998 89999999999999999999765
No 85
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=58.16 E-value=6.5 Score=28.68 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=31.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|++.+|++.+.+.+.|..|.+.|++...
T Consensus 29 ~lt~~elA~~lg~sr~tv~r~L~~l~~~gli~~~ 62 (82)
T d2zcwa1 29 KATHDELAAAVGSVRETVTKVIGELAREGYIRSG 62 (82)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 4799999999999999999999999999998754
No 86
>d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=57.74 E-value=6.3 Score=27.94 Aligned_cols=50 Identities=14% Similarity=0.031 Sum_probs=43.2
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
|.=|..||-+-....-+|++.|...+|-+....+.+|.-|++.|++--+.
T Consensus 2 s~Dqt~vLe~a~~~G~Vt~s~l~~~lgW~~~Ra~~aLd~lv~eGl~WvD~ 51 (68)
T d1u5ta2 2 TSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDY 51 (68)
T ss_dssp CTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEEC
T ss_pred CchHHHHHHHHHHcCceeHHHHHHHhCCCHHHHHHHHHHHHhcCcEEEec
Confidence 34577888777777889999999999999999999999999999986553
No 87
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=57.57 E-value=5.8 Score=28.86 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=31.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-++|+..+|++.+.+.+.|..|.+.|++...
T Consensus 30 ~~t~~eiA~~lG~sretvsr~l~~l~~~g~I~~~ 63 (80)
T d1ft9a1 30 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQ 63 (80)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC
Confidence 4789999999999999999999999999999754
No 88
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=55.00 E-value=13 Score=26.09 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=36.1
Q ss_pred hhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 454 LFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 454 lFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
.|..++.++..+|++..|++...+.++|..|...|+|...+
T Consensus 19 ~~~~G~~l~~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~ 59 (69)
T d2hs5a1 19 TFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHEL 59 (69)
T ss_dssp SSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCcCccCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 34556788999999999999999999999999999997654
No 89
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=54.93 E-value=4.6 Score=31.35 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=35.7
Q ss_pred hhhhhh-hhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCC
Q psy16234 546 QAAIVR-IMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTD 603 (609)
Q Consensus 546 ~A~IVR-iMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~ 603 (609)
+..|.+ +++..+.++..+|-.. +..+.+.+.+.|..|.++|||.|..+..+
T Consensus 23 ~~~iL~~L~~~~~~~t~~eLa~~-------~~i~~~tvs~~l~~L~~~GlV~r~~~~~d 74 (109)
T d2d1ha1 23 DVAVLLKMVEIEKPITSEELADI-------FKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH-------HCccHhHHHHHHHHHHHCCCEEEeecCCC
Confidence 344443 4466777887766533 35788999999999999999998765433
No 90
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=54.00 E-value=6.6 Score=29.30 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=33.8
Q ss_pred hhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccc
Q psy16234 454 LFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 454 lFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
+...+..+|=++|++.||+....++++|..|...|+..
T Consensus 27 L~~~~~evtDe~iA~~tgi~in~VRk~Ly~L~~~~L~~ 64 (88)
T d1q1ha_ 27 LLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVS 64 (88)
T ss_dssp HHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCE
T ss_pred HHhccCcCCHHHHHHHhCCcHHHHHHHHHHHHhCCceE
Confidence 44555679999999999999999999999999999875
No 91
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=53.92 E-value=11 Score=26.23 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=35.8
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
+|+-|.-||.++-+ .+|..+|++.+|++...++.++..+..
T Consensus 7 LT~rE~~vl~ll~~--G~s~~eIA~~l~iS~~TV~~~~~~i~~ 47 (67)
T d1a04a1 7 LTPRERDILKLIAQ--GLPNKMIARRLDITESTVKVHVKHMLK 47 (67)
T ss_dssp SCHHHHHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh--CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57778888888876 579999999999999999999999874
No 92
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=53.92 E-value=6.6 Score=31.86 Aligned_cols=49 Identities=16% Similarity=0.346 Sum_probs=37.0
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
-+..|...+...+.++-.+|... ...+.+.+.+.|..|.++|||+|..+
T Consensus 37 ~q~~vL~~l~~~~~~t~~~la~~-------l~~~~~~vsr~l~~L~~~G~v~r~~~ 85 (141)
T d1lnwa_ 37 PDVHVLKLIDEQRGLNLQDLGRQ-------MCRDKALITRKIRELEGRNLVRRERN 85 (141)
T ss_dssp HHHHHHHHHHSSTTCBHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH-------HCccHhHHHHHHHHHHHhhceeeecc
Confidence 35566666666777777766533 45789999999999999999987654
No 93
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=52.61 E-value=18 Score=25.78 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=33.5
Q ss_pred HHHHhhcCCCCCCHHHHHHHh----C--CCHHHHHHHHHHHHhcCccccC
Q psy16234 450 AILLLFEKNDAMTCGDIQTVL----S--LSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t----~--i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.||-....+. +.++|...+ | +++..+...|..|++.|+|.+.
T Consensus 10 ~ILkaia~G~--rWs~IK~yle~~~G~~I~d~~ls~lL~nL~k~~~iek~ 57 (73)
T d2fnaa1 10 NIMRTLSKCG--KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE 57 (73)
T ss_dssp HHHHHHTTCB--CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHccC--cHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCceeec
Confidence 4666666653 677777665 6 8999999999999999999875
No 94
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=49.00 E-value=6.8 Score=27.73 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=38.2
Q ss_pred hhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 547 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 547 A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
+.|.+++..+..++..+|... + ..+.+.+...+..|++.|+|...
T Consensus 9 ~~Il~~l~~~g~~sr~eLa~~----~---glS~~Tv~~~l~~L~~~Glv~e~ 53 (71)
T d1z05a1 9 GRVYKLIDQKGPISRIDLSKE----S---ELAPASITKITRELIDAHLIHET 53 (71)
T ss_dssp HHHHHHHHHHCSBCHHHHHHH----H---TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHH----H---CCCHHHHHHHHHHHHHCCCEEEe
Confidence 578899999999999877744 3 47889999999999999999754
No 95
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=49.00 E-value=17 Score=25.03 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=35.0
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
.|+-|.-||-+.-+ ..|..||++.++++...++.++..+.+
T Consensus 5 Lt~rE~~vl~l~~~--G~s~~eIA~~l~iS~~TV~~~~~~i~~ 45 (65)
T d1l3la1 5 LDPKEATYLRWIAV--GKTMEEIADVEGVKYNSVRVKLREAMK 45 (65)
T ss_dssp CCHHHHHHHHHHTT--TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHh--cCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46678888888766 579999999999999999999998864
No 96
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=48.26 E-value=12 Score=25.67 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=25.5
Q ss_pred HHHHH-Hhh--cCCCCCCHHHHHHHhCCCHHHHHHHH
Q psy16234 448 QMAIL-LLF--EKNDAMTCGDIQTVLSLSQDQIGRHI 481 (609)
Q Consensus 448 Q~~iL-llF--n~~~~lt~~ei~~~t~i~~~~l~~~L 481 (609)
+..|+ +.| ++..+.|+.||++.+|++.+.+...-
T Consensus 13 er~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~ 49 (61)
T d1ku3a_ 13 EAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIE 49 (61)
T ss_dssp HHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 33344 555 56788999999999999998776643
No 97
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=48.24 E-value=17 Score=25.15 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=35.2
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
+|.-|.-||.++-+ .+|..||++.+|++...++.++..+.+
T Consensus 5 LT~rE~~vl~l~~~--G~s~~eIA~~L~is~~TV~~~~~~i~~ 45 (67)
T d1fsea_ 5 LTKREREVFELLVQ--DKTTKEIASELFISEKTVRNHISNAMQ 45 (67)
T ss_dssp CCHHHHHHHHHHTT--TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc--cCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56778888888765 579999999999999999999998864
No 98
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=48.16 E-value=7.1 Score=26.48 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q psy16234 459 DAMTCGDIQTVLSLSQDQIGRHIAS 483 (609)
Q Consensus 459 ~~lt~~ei~~~t~i~~~~l~~~L~~ 483 (609)
-.-|.+||++.+|++.+.+..+|..
T Consensus 30 RePT~~EiA~~l~~~~e~V~~~l~a 54 (57)
T d1l0oc_ 30 RAPTVTEIADHLGISPEDVVLAQEA 54 (57)
T ss_dssp SCCBHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3569999999999999999988865
No 99
>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}
Probab=47.94 E-value=11 Score=29.33 Aligned_cols=43 Identities=9% Similarity=0.202 Sum_probs=34.7
Q ss_pred HHHHhhcCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHhcCccccC
Q psy16234 450 AILLLFEKNDAMTCGDIQTVL-SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t-~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.||..... +...+.||...+ |++...|.+.|..|...||+.+.
T Consensus 23 ~Il~~L~~-g~~RF~el~~~l~gIS~~~Ls~rLk~L~~~glv~R~ 66 (108)
T d1z7ua1 23 SLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRE 66 (108)
T ss_dssp HHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCCHHHHHHHCcCCChhHHHHHHHHHHHCCcceee
Confidence 44433333 456899999996 89999999999999999999764
No 100
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=46.36 E-value=14 Score=25.72 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=26.8
Q ss_pred cHHHHHHH-HhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy16234 445 QTFQMAIL-LLFEKNDAMTCGDIQTVLSLSQDQIGRHIASL 484 (609)
Q Consensus 445 s~~Q~~iL-llFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L 484 (609)
|.-|-.|+ +.|- ..+|++||++.+|++...+...+..-
T Consensus 23 ~~~~r~v~~l~~~--~~~s~~eIA~~lgis~~tv~~~~~ra 61 (71)
T d1rp3a2 23 PEREKLVIQLIFY--EELPAKEVAKILETSVSRVSQLKAKA 61 (71)
T ss_dssp CHHHHHHHHHHHT--SCCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh--HhCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444 4443 45899999999999998888766543
No 101
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=46.04 E-value=10 Score=30.47 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=37.2
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTD 603 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~ 603 (609)
+..|...+.....++..+|-.. +..+.+.+-+.|..|.++|||.|..+..|
T Consensus 34 q~~iL~~l~~~~~~t~~~La~~-------l~i~~~~vs~~v~~L~~~gli~r~~~~~D 84 (140)
T d2etha1 34 ELYAFLYVALFGPKKMKEIAEF-------LSTTKSNVTNVVDSLEKRGLVVREMDPVD 84 (140)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHH-------TTSCHHHHHHHHHHHHHTTSEEEEECTTT
T ss_pred HHHHHHHHHHcCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCeeeeecccc
Confidence 4444555566677777655533 56889999999999999999998765444
No 102
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.73 E-value=16 Score=26.81 Aligned_cols=46 Identities=7% Similarity=0.164 Sum_probs=37.6
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccc
Q psy16234 446 TFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491 (609)
Q Consensus 446 ~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~ 491 (609)
..+-.|+..-.-...++++.|++.++++.+++...|..|+..|-|.
T Consensus 16 i~Ehni~~is~~Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~i~ 61 (84)
T d1ufma_ 16 VIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMN 61 (84)
T ss_dssp HHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhhceeeHHHHHHHHCCCHHHHHHHHHHHHhcCeEE
Confidence 4455555555567889999999999999999999999999877653
No 103
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=44.47 E-value=15 Score=25.83 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=38.4
Q ss_pred hhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcccccc
Q psy16234 547 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 547 A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
+.|.+.+..++.++-.+|... ...+.+-|.+.++.|++.|+|+..
T Consensus 8 ~~Il~~i~~~g~~sr~eLa~~-------~gLS~~Tvs~iv~~L~~~glv~e~ 52 (70)
T d1z6ra1 8 GAVYRLIDQLGPVSRIDLSRL-------AQLAPASITKIVHEMLEAHLVQEL 52 (70)
T ss_dssp HHHHHHHHSSCSCCHHHHHHH-------TTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEee
Confidence 568899999999999987744 357889999999999999999754
No 104
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=43.94 E-value=15 Score=27.93 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=30.8
Q ss_pred CCCHHHHHHHhCCC-HHHHHHHHHHHHhcCccccC
Q psy16234 460 AMTCGDIQTVLSLS-QDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 460 ~lt~~ei~~~t~i~-~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|-+||+..+|++ -+.+.+.|..|.+.|++...
T Consensus 31 ~lTqeeLA~~lG~s~ReTVsR~L~~L~~~GlI~~~ 65 (100)
T d2bgca1 31 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK 65 (100)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCCchHHHHHHHHHHHHHCCCEEEc
Confidence 58999999999996 78999999999999999754
No 105
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=43.31 E-value=8.9 Score=28.96 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=38.7
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
.+..|..++..+..++..+|.+. +..+.+.+.+.+..|.+.|||+|..
T Consensus 17 ~r~~IL~~L~~~~~~~~~eLa~~-------l~is~~~vs~~l~~L~~~glV~~~~ 64 (100)
T d1ub9a_ 17 VRLGIMIFLLPRRKAPFSQIQKV-------LDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhccCCCeeHHHHHHH-------HhhccccccHHHHHHhhhceeEEEE
Confidence 45677888877888888777543 5688999999999999999998653
No 106
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=42.57 E-value=23 Score=24.79 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=34.8
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
.|+-+.-|+.+.-+ .+|..+|+..+|++...++.++..+..
T Consensus 13 LT~rE~~vl~~l~~--G~s~~eIA~~l~iS~~TV~~~~~~i~~ 53 (70)
T d1yioa1 13 LTGREQQVLQLTIR--GLMNKQIAGELGIAEVTVKVHRHNIMQ 53 (70)
T ss_dssp SCHHHHHHHHHHTT--TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc--CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56777888877765 579999999999999999999998864
No 107
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.55 E-value=9.6 Score=34.66 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=32.9
Q ss_pred HHHHHHH-hhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 447 FQMAILL-LFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 447 ~Q~~iLl-lFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
+...|+- +++..+.+|+++|+++|||..+++..+|+.| ++|..
T Consensus 192 W~~~i~~~l~~~~~~isi~~is~~T~i~~~Dii~tL~~l---~~l~~ 235 (273)
T d1fy7a_ 192 WSDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL---NILRY 235 (273)
T ss_dssp HHHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHH---TCEEE
T ss_pred HHHHHHHHHHhCCCCccHHHHHHhcCCCHHHHHHHHHHC---CCEEE
Confidence 4445553 3445678999999999999999999999976 56644
No 108
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=40.81 E-value=12 Score=26.73 Aligned_cols=50 Identities=4% Similarity=0.123 Sum_probs=37.5
Q ss_pred hhhhhhhhhhccccCC-ChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 544 YLQAAIVRIMKSRKQI-RHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 544 ~i~A~IVRiMK~~k~l-~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
..+...-..++....| +..+|... |.++..-+.+++..|.++|||.+.++
T Consensus 12 i~~~I~~g~~~~G~~LPs~~eLa~~-------~~vSr~tvr~Al~~L~~~G~i~~~~g 62 (74)
T d1hw1a1 12 IIESIWNNRFPPGTILPAERELSEL-------IGVTRTTLREVLQRLARDGWLTIQHG 62 (74)
T ss_dssp HHHHHHTTSSCTTSBCCCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHcCCCCCcCCCccHHHHHHH-------HCCCHHHHHHHHHHHHHCCcEEEEeC
Confidence 3444455566666777 45555533 77999999999999999999999876
No 109
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=39.79 E-value=21 Score=24.62 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q psy16234 459 DAMTCGDIQTVLSLSQDQIGRHIAS 483 (609)
Q Consensus 459 ~~lt~~ei~~~t~i~~~~l~~~L~~ 483 (609)
..+|++||++.+|++...++..+..
T Consensus 33 ~~~s~~eIA~~lgis~~tv~~~l~r 57 (68)
T d1or7a1 33 DGLSYEEIAAIMDCPVGTVRSRIFR 57 (68)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3579999999999999888776543
No 110
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=39.54 E-value=18 Score=27.87 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=25.6
Q ss_pred cHHHHHH-HHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy16234 445 QTFQMAI-LLLFEKNDAMTCGDIQTVLSLSQDQIGRHIAS 483 (609)
Q Consensus 445 s~~Q~~i-LllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~ 483 (609)
|.-|-.| .+.|.+ .+|++||++.+|++...+..++..
T Consensus 20 pe~QR~vl~L~~~e--~ls~~EIA~~lgiS~~aV~~~l~R 57 (106)
T d1xsva_ 20 TNKQRNYLELFYLE--DYSLSEIADTFNVSRQAVYDNIRR 57 (106)
T ss_dssp CHHHHHHHHHHHTS--CCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4444433 344544 589999999999998877665544
No 111
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=39.50 E-value=8.9 Score=30.74 Aligned_cols=49 Identities=8% Similarity=0.226 Sum_probs=35.9
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
-+..|...+...+.++..+|. +. ...+.+.+.+.|+.|+++|||+|..+
T Consensus 35 ~q~~vL~~i~~~~~~t~~~la----~~---l~~~~~~~s~~l~~L~~~Gli~r~~~ 83 (136)
T d2bv6a1 35 PQFLVLTILWDESPVNVKKVV----TE---LALDTGTVSPLLKRMEQVDLIKRERS 83 (136)
T ss_dssp HHHHHHHHHHHSSEEEHHHHH----HH---TTCCTTTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHH----HH---HCCCHhHHHHHHHHHHHCCCEEEeec
Confidence 455666666677777766555 33 34667889999999999999987654
No 112
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=39.20 E-value=27 Score=25.74 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=33.3
Q ss_pred cCCCCCCHHHHHHHhCC--CHHHHHHHHHHHHhcCccccC
Q psy16234 456 EKNDAMTCGDIQTVLSL--SQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 456 n~~~~lt~~ei~~~t~i--~~~~l~~~L~~L~~~~iL~~~ 493 (609)
..+..++..+|++..|+ +...++.+|..|-+.|+|.+.
T Consensus 19 ~~g~Pv~s~~i~~~~~l~~S~aTIRn~m~~LE~~G~l~~~ 58 (87)
T d1stza1 19 ENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQP 58 (87)
T ss_dssp HHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECC
T ss_pred HcCCccCHHHHHHHhCCCCCHHHHHHHHHHHHHCCcccCC
Confidence 34678999999999776 699999999999999999764
No 113
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=39.20 E-value=17 Score=28.01 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=27.4
Q ss_pred ecHHHHHHH-HhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q psy16234 444 MQTFQMAIL-LLFEKNDAMTCGDIQTVLSLSQDQIGRHIASL 484 (609)
Q Consensus 444 ~s~~Q~~iL-llFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L 484 (609)
.|.-|-.|+ |.|-+ .+|++||++.+|++...+..+|..-
T Consensus 17 Lp~~qR~v~~L~y~~--~ls~~EIA~~lgiS~~aV~~~l~RA 56 (106)
T d1s7oa_ 17 LTDKQMNYIELYYAD--DYSLAEIADEFGVSRQAVYDNIKRT 56 (106)
T ss_dssp SCHHHHHHHHHHHHT--CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 455555554 33443 5899999999999998777766553
No 114
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=39.11 E-value=17 Score=26.64 Aligned_cols=34 Identities=9% Similarity=0.350 Sum_probs=29.5
Q ss_pred HhhcCCCCCCHHHHHHHhC--CCHHHHHHHHHHHHh
Q psy16234 453 LLFEKNDAMTCGDIQTVLS--LSQDQIGRHIASLVE 486 (609)
Q Consensus 453 llFn~~~~lt~~ei~~~t~--i~~~~l~~~L~~L~~ 486 (609)
++|-..+++|.++|++.++ ++...+...|..|..
T Consensus 15 lLFas~~Pls~~~L~~~l~~~~~~~~i~~~l~~L~~ 50 (85)
T d1t6sa1 15 LIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNR 50 (85)
T ss_dssp HHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 5677788999999999996 778899999999874
No 115
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.55 E-value=28 Score=25.47 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHh------CCCHHHHHHHHHHHHhcCccccCC
Q psy16234 446 TFQMAILLLFEKNDAMTCGDIQTVL------SLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 446 ~~Q~~iLllFn~~~~lt~~ei~~~t------~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
..||+|.-..-...+++.++|...+ ..+...+++++..|+..+.|..++
T Consensus 20 ~i~AaIVRIMK~~k~l~h~eL~~~v~~~l~f~~~~~~iK~~Ie~LIereYi~R~~ 74 (84)
T d2hyec1 20 QIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDK 74 (84)
T ss_dssp HHHHHHHHHHHHSSEEETHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTSCBCCS
T ss_pred HHHHHHHHHHHHcccCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHhhcCC
Confidence 4788998888888888888877655 455789999999999999998864
No 116
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=38.49 E-value=12 Score=30.13 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=36.6
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
-+..+..++-..+.++..+|... ...+.+.+.+.|..|.++|||+|.+
T Consensus 35 ~q~~vL~~l~~~~~~t~~ela~~-------~~i~~~~vs~~v~~L~~~glv~r~~ 82 (138)
T d1jgsa_ 35 AQFKVLCSIRCAACITPVELKKV-------LSVDLGALTRMLDRLVCKGWVERLP 82 (138)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhHHhCcCCCHHHHHHH-------HCCCHhHHHHHHHHHhhCCCEEEee
Confidence 44566666666778887766643 3467899999999999999999854
No 117
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=37.45 E-value=22 Score=26.02 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=35.7
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
+|.-|.-||.++-. .++..+|++.++++...+..++.++.+
T Consensus 23 LT~rE~~vl~ll~~--G~s~~eIA~~l~iS~~TV~~~~~~i~~ 63 (87)
T d1p4wa_ 23 LSPKESEVLRLFAE--GFLVTEIAKKLNRSIKTISSQKKSAMM 63 (87)
T ss_dssp CCHHHHHHHHHHHH--TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc--CCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 57788888888876 468999999999999999999999874
No 118
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=37.37 E-value=9.1 Score=30.65 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=37.2
Q ss_pred hhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCC
Q psy16234 544 YLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANS 601 (609)
Q Consensus 544 ~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~ 601 (609)
.-+..|..++.....++-.+|... +..+.+-+.+.|..|.++|||+|..+.
T Consensus 30 ~~q~~vL~~l~~~~~~t~~~la~~-------~~i~~~~vs~~i~~L~~~gli~r~~~~ 80 (136)
T d2fbia1 30 EQQWRVIRILRQQGEMESYQLANQ-------ACILRPSMTGVLARLERDGIVRRWKAP 80 (136)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 345556666666677776555422 568899999999999999999876543
No 119
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=36.42 E-value=17 Score=24.63 Aligned_cols=36 Identities=8% Similarity=0.215 Sum_probs=31.5
Q ss_pred HHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q psy16234 451 ILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVE 486 (609)
Q Consensus 451 iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~ 486 (609)
.|-+.-...++|.+.|+..+|-|.+++...|..+.+
T Consensus 7 LLr~LA~G~PVs~~~LA~alg~~~~eV~~aL~~~p~ 42 (60)
T d1s6la1 7 LLRELAKGRPVSRTTLAGILDWPAERVAAVLEQATS 42 (60)
T ss_dssp HHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHTTCCS
T ss_pred HHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 455667889999999999999999999999998763
No 120
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=36.16 E-value=13 Score=31.01 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=34.9
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
|..|..++-....++..+|... ...+.+.+-+.|..|+++|||+|..+
T Consensus 43 q~~vL~~l~~~~~~t~~~la~~-------~~l~~~tvs~~i~rL~~~gli~r~~~ 90 (162)
T d2fxaa1 43 EHHILWIAYQLNGASISEIAKF-------GVMHVSTAFNFSKKLEERGYLRFSKR 90 (162)
T ss_dssp HHHHHHHHHHHTSEEHHHHHHH-------TTCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHhhhccCCCcCHHHHHHH-------HcCCchhhHHHHHHHHHCCCceeecc
Confidence 4445556656666665554432 45789999999999999999998654
No 121
>d1lvaa4 a.4.5.35 (A:575-634) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=35.41 E-value=34 Score=23.29 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=38.0
Q ss_pred HHHHhhcCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 450 AILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 450 ~iLllFn~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.++..|.++..+|+.+..+.+|++-+.....|.-|=+.|+..+.
T Consensus 8 ~~i~~l~~~g~~~v~~frd~~g~sRK~ai~lLE~~D~~~~T~R~ 51 (60)
T d1lvaa4 8 EVIKNLASTGPFGLAEARDALGSSRKYVLPLLEYLDQVKFTRRV 51 (60)
T ss_dssp HHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCcHHHHHHHHCccHHHHHHHHHHHhhcCCeEee
Confidence 35566788889999999999999999999999999888887665
No 122
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.19 E-value=16 Score=25.78 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=28.0
Q ss_pred cccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 555 SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 555 ~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
....++.++|. .++++ .+..+|+++|+.|.+.|.|=-.-
T Consensus 20 ~~eGi~~~el~----~~l~~--~~~~~i~~aid~L~~eG~IYsTi 58 (69)
T d1dpua_ 20 RPEGLNFQDLK----NQLKH--MSVSSIKQAVDFLSNEGHIYSTV 58 (69)
T ss_dssp CTTTEEHHHHH----HHSTT--SCHHHHHHHHHHHHHTTSEEECS
T ss_pred CccCcCHHHHH----HHccC--CCHHHHHHHHHHHHhCCceeccc
Confidence 45567776555 44432 56899999999999999875443
No 123
>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.57 E-value=7.8 Score=27.79 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=35.3
Q ss_pred HHHHH-HhhcCCCCCCHHHHHHHhCCCH-HHHHHHHHHHHhcCccccC
Q psy16234 448 QMAIL-LLFEKNDAMTCGDIQTVLSLSQ-DQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 448 Q~~iL-llFn~~~~lt~~ei~~~t~i~~-~~l~~~L~~L~~~~iL~~~ 493 (609)
+--|+ .+++.. .-+.-+|+..+|++. .++.++|-+|-+.|-+.+.
T Consensus 7 eekI~~~L~~~g-~~~Al~iak~lGl~kakeVN~~LY~L~k~g~v~k~ 53 (73)
T d1xmka1 7 KEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ 53 (73)
T ss_dssp HHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC-CchHHHHHHHhCCCcHHHHhHHHHHHHHCCCeecC
Confidence 33444 445555 467888999999998 6999999999999888765
No 124
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.69 E-value=16 Score=33.00 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=27.9
Q ss_pred HHHHHHHhh-cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCcccc
Q psy16234 447 FQMAILLLF-EKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTS 492 (609)
Q Consensus 447 ~Q~~iLllF-n~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~ 492 (609)
.-..|+-.+ +..+++|+++|++.|||..+++..+|+.| |+|..
T Consensus 189 W~~~il~~l~~~~~~isI~~is~~T~i~~~Dii~tL~~l---~~l~~ 232 (271)
T d2giva1 189 WSWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL---NMVKY 232 (271)
T ss_dssp HHHHHHHHHC------CHHHHHHHHCBCHHHHHHHHHHT---TCEEE
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHhCCCHHHHHHHHHHC---CCEEE
Confidence 334455433 33568999999999999999988888775 56654
No 125
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.87 E-value=42 Score=24.76 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHh--------CCCHHHHHHHHHHHHhcCccccCC
Q psy16234 446 TFQMAILLLFEKNDAMTCGDIQTVL--------SLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 446 ~~Q~~iLllFn~~~~lt~~ei~~~t--------~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
..||+|.-..-...+++.++|...+ ..+...+++++..|+..+.|..++
T Consensus 24 ~i~AaIVRIMK~~k~l~h~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereYi~R~~ 80 (90)
T d1ldja1 24 LIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVD 80 (90)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhHHHhcCC
Confidence 5788998888888888888877655 345689999999999999998764
No 126
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=32.26 E-value=30 Score=22.45 Aligned_cols=30 Identities=7% Similarity=0.051 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy16234 458 NDAMTCGDIQTVLSLSQDQIGRHIASLVEC 487 (609)
Q Consensus 458 ~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~ 487 (609)
.+.+|+++|++.+|++...+.+........
T Consensus 17 ~~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~ 46 (54)
T d1bl0a1 17 ESPLSLEKVSERSGYSKWHLQRMFKKETGH 46 (54)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 468999999999999999999988887654
No 127
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.21 E-value=21 Score=24.41 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=36.6
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccc
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVER 597 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r 597 (609)
+-.|.+++...+.++-++|-++ |.++...|.+.|+.|-+.|+.-.
T Consensus 7 ~~~iL~~L~~~~~~s~~eLa~~-------l~vS~~ti~r~i~~L~~~G~~I~ 51 (63)
T d1biaa1 7 PLKLIALLANGEFHSGEQLGET-------LGMSRAAINKHIQTLRDWGVDVF 51 (63)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHH-------HTSCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHCCcCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCcEE
Confidence 3467888888888888877644 67999999999999999998433
No 128
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=31.42 E-value=34 Score=24.27 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=33.9
Q ss_pred hhhccccCC-ChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 551 RIMKSRKQI-RHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 551 RiMK~~k~l-~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
..++....| +..+|..+ |.++...+.+++..|...|+|.+.++
T Consensus 14 g~l~~G~~LPse~~La~~-------~~vSr~tvr~Al~~L~~~Gli~~~~g 57 (78)
T d3bwga1 14 HQLQQGDKLPVLETLMAQ-------FEVSKSTITKSLELLEQKGAIFQVRG 57 (78)
T ss_dssp TTCCTTCBCCCHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCcCCCcCHHHHHHH-------HCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 355666666 55555533 88999999999999999999999876
No 129
>d1gpja1 a.151.1.1 (A:303-404) Glutamyl tRNA-reductase dimerization domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=30.53 E-value=61 Score=24.17 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=27.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHH
Q psy16234 95 QTCNVSQYMERVLQVLHEETNRSVRFLHVSSYPKVKAKCEQHMV 138 (609)
Q Consensus 95 ~~~s~~eYl~~v~~~l~~E~~r~~~yL~~~t~~kl~~~l~~~LI 138 (609)
....+.+|-.+++..-+.|.+|+.+-|.......+++.+-..|+
T Consensus 25 ~~p~I~~lr~~~e~ir~~Elekal~kl~~~~~e~vie~l~~~l~ 68 (102)
T d1gpja1 25 ERRLVADVAKSLHEIKDRELERALRRLKTGDPENVLQDFAEAYT 68 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSCC-----CCTTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34467889999999999999998777765433333333334443
No 130
>d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]}
Probab=30.40 E-value=24 Score=26.76 Aligned_cols=54 Identities=15% Similarity=0.367 Sum_probs=42.5
Q ss_pred hhhhhhhhhhccccCCChHHHHHHHHHhhcC--CCCChHHHHHHHHHhhhhcccccc
Q psy16234 544 YLQAAIVRIMKSRKQIRHNALIQEVLSQSKS--FAPSISMIKKCIESLIDKNYVERT 598 (609)
Q Consensus 544 ~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~--F~~~~~~ik~~Ie~LIekeyl~r~ 598 (609)
.|.-.|+++.-+.+.-.. ++.++..+..++ |.|+-++|=+++-.|++.|++++-
T Consensus 16 flKlYlit~~eq~r~YG~-q~L~~Lr~eFk~~Gy~P~hsEiYraLHeL~~dgilkq~ 71 (120)
T d1bm9a_ 16 FLKLYMITMTEQERLYGL-KLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQI 71 (120)
T ss_dssp HHHHHHHHHHHTTCCBST-THHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHhhhhhhhhhccchHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 456667777666666555 456677777877 999999999999999999999874
No 131
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.05 E-value=39 Score=25.00 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=40.9
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHh--------CCCHHHHHHHHHHHHhcCccccCC
Q psy16234 445 QTFQMAILLLFEKNDAMTCGDIQTVL--------SLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 445 s~~Q~~iLllFn~~~~lt~~ei~~~t--------~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
..+||+|.-..-...+++.++|...+ ..+...+++++..|+..+.|..++
T Consensus 25 ~~i~AaIVRIMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIekeYi~R~~ 82 (92)
T d1iuya_ 25 HEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTP 82 (92)
T ss_dssp THHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhhhhcCC
Confidence 46899999888888888988886543 345889999999999999998764
No 132
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=29.76 E-value=17 Score=29.29 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=34.6
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCC
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANS 601 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~ 601 (609)
|..+...+-.+..++..+|... +..+.+.+-+.|..|.++|||+|.++.
T Consensus 31 q~~iL~~i~~~~~~t~~~la~~-------l~i~~~tvs~~l~~L~~~glI~r~~~~ 79 (144)
T d1lj9a_ 31 QYLYLVRVCENPGIIQEKIAEL-------IKVDRTTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHhCCCCCHHHHHHH-------HCccHhhHHHHHHHHHhhhcccccCCC
Confidence 4444444445566666655432 458899999999999999999976543
No 133
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=29.66 E-value=32 Score=25.27 Aligned_cols=39 Identities=8% Similarity=0.201 Sum_probs=28.4
Q ss_pred cHHHHHHH-Hhh--cCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy16234 445 QTFQMAIL-LLF--EKNDAMTCGDIQTVLSLSQDQIGRHIAS 483 (609)
Q Consensus 445 s~~Q~~iL-llF--n~~~~lt~~ei~~~t~i~~~~l~~~L~~ 483 (609)
+.-+..|+ +.| ++.++.|+.+|++.+|++.+.+...-..
T Consensus 20 ~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrERVRQie~~ 61 (87)
T d1ttya_ 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVK 61 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHhCCCHHHHHHHHHH
Confidence 44455555 444 5678899999999999999877765433
No 134
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=28.98 E-value=23 Score=27.80 Aligned_cols=52 Identities=12% Similarity=0.235 Sum_probs=42.2
Q ss_pred EEecHHHHHHHHhhcCCCCCCHHHHHHHh----CCCHHHHHHHHHHHHhcCccccC
Q psy16234 442 VTMQTFQMAILLLFEKNDAMTCGDIQTVL----SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 442 l~~s~~Q~~iLllFn~~~~lt~~ei~~~t----~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+.+|.....|+..+=+.+++|+.||.+.+ +++...+...|..|++.|+|...
T Consensus 2 i~ls~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~tTv~T~L~rL~~Kg~l~~~ 57 (122)
T d1sd4a_ 2 VEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 57 (122)
T ss_dssp CCCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCCCHHHHHHHhhccCCCcHhHHHHHHHHHHhhhceeee
Confidence 34566777788666666789999999886 67889999999999999999654
No 135
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=28.65 E-value=14 Score=29.47 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=36.1
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 545 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 545 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
-+..|...+.....++..+|... ...+.+.+-+.|..|.++|||+|..+
T Consensus 31 ~q~~iL~~i~~~~~~t~~~la~~-------l~i~~~tvs~~l~~L~~~gli~r~~~ 79 (139)
T d2a61a1 31 AQFDILQKIYFEGPKRPGELSVL-------LGVAKSTVTGLVKRLEADGYLTRTPD 79 (139)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH-------hCCCcccchHHHHHHHhcCeeeeeec
Confidence 34555566666677777766533 34778999999999999999998654
No 136
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.33 E-value=25 Score=31.63 Aligned_cols=44 Identities=11% Similarity=0.298 Sum_probs=27.9
Q ss_pred HHHHHHHhh-c-CCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 447 FQMAILLLF-E-KNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 447 ~Q~~iLllF-n-~~~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
....|+-.+ + ...++|+++|++.|||..+++..+|+.| |+|...
T Consensus 189 W~~~i~~~L~~~~~~~~si~dis~~T~i~~~Dii~tL~~l---~~l~~~ 234 (270)
T d2ozua1 189 WKSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHL---RMLDFR 234 (270)
T ss_dssp HHHHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHT---TCC---
T ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhCCCHHHHHHHHHHC---CCEEEE
Confidence 444555444 2 2347999999999999999999988875 566543
No 137
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=27.32 E-value=47 Score=24.49 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHhcCccccC
Q psy16234 459 DAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 459 ~~lt~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+..+...|.-..|++...+.+.|..|++.|++...
T Consensus 17 ~g~~kT~i~~~aNLs~~~~~kyl~~L~~~GLI~~~ 51 (90)
T d1r7ja_ 17 SGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 51 (90)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCccHHHHHcCCCHHHHHHHHHHHHHCCCeeec
Confidence 34578999999999999999999999999999654
No 138
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=27.08 E-value=18 Score=28.75 Aligned_cols=27 Identities=4% Similarity=0.155 Sum_probs=23.5
Q ss_pred CCCChHHHHHHHHHhhhhccccccCCC
Q psy16234 575 FAPSISMIKKCIESLIDKNYVERTANS 601 (609)
Q Consensus 575 F~~~~~~ik~~Ie~LIekeyl~r~~~~ 601 (609)
...+.+.+.+.|+.|+++|||.|..+.
T Consensus 57 ~~i~~~~vsr~i~~L~~~glv~r~~~~ 83 (137)
T d1z91a1 57 LYLDSGTLTPMLKRMEQQGLITRKRSE 83 (137)
T ss_dssp TTCCHHHHHHHHHHHHHHTSEECCBCS
T ss_pred HCcCHHHHHHHHHHHhhccceEEeecC
Confidence 568899999999999999999987553
No 139
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=26.97 E-value=35 Score=23.98 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=31.7
Q ss_pred ccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q psy16234 556 RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYS 606 (609)
Q Consensus 556 ~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~ 606 (609)
...++..+|- +.+ ..+.+.+-+.+..|.+.||++|+++ ..|.
T Consensus 18 ~~~~s~~eia----~~~---~~~~st~~rll~tL~~~g~l~~~~~--g~y~ 59 (75)
T d1mkma1 18 PGDVSVSEIA----EKF---NMSVSNAYKYMVVLEEKGFVLRKKD--KRYV 59 (75)
T ss_dssp SSCBCHHHHH----HHT---TCCHHHHHHHHHHHHHTTSEEECTT--SCEE
T ss_pred CCCCCHHHHH----HHH---CcCHHHHHHHHHHHHHCCCEEECCC--CCEe
Confidence 4667877665 333 3668889999999999999999863 4453
No 140
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=26.65 E-value=29 Score=24.08 Aligned_cols=48 Identities=10% Similarity=0.232 Sum_probs=34.8
Q ss_pred hhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q psy16234 550 VRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 605 (609)
Q Consensus 550 VRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y 605 (609)
-.-++....++-.+|..+ |..+..-+.+++..|.++|+|.+.++ ...|
T Consensus 17 ~g~~~~G~~l~~~~La~~-------~~vSr~tvr~Al~~L~~~Gli~~~~~-~G~~ 64 (69)
T d2hs5a1 17 DGTFRPGARLSEPDICAA-------LDVSRNTVREAFQILIEDRLVAHELN-RGVF 64 (69)
T ss_dssp HTSSCTTCEECHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEETT-TEEE
T ss_pred cCCCCCcCccCHHHHHHH-------HCCCHHHHHHHHHHHHHCCcEEEEcC-CEEE
Confidence 345555555654444322 78999999999999999999999876 3444
No 141
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=26.63 E-value=65 Score=21.95 Aligned_cols=57 Identities=18% Similarity=0.337 Sum_probs=43.4
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCceeec
Q psy16234 546 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 608 (609)
Q Consensus 546 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~Yi 608 (609)
+++|-++.+.+..-+.++|+....+. +|.++-..|-+-|..| |-++.... .+.|.|.
T Consensus 6 q~~I~~li~~~~i~tQ~eL~~~L~~~--G~~vTQaTlSRDL~eL---g~vKv~~~-~g~~~Y~ 62 (63)
T d2p5ka1 6 HIKIREIITSNEIETQDELVDMLKQD--GYKVTQATVSRDIKEL---HLVKVPTN-NGSYKYS 62 (63)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHT--TCCCCHHHHHHHHHHH---TCEEEEET-TTEEEEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHc--CCCeeHHHHHHHHHHh---CCEEeeCC-CCcEEee
Confidence 67889999999999999999776665 4999999999888776 55553322 3677774
No 142
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.07 E-value=39 Score=26.63 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=40.2
Q ss_pred EecHHHHHHHHhhcCC-C-CCCHHHHHHHh-----CCCHHHHHHHHHHHHhcCccccC
Q psy16234 443 TMQTFQMAILLLFEKN-D-AMTCGDIQTVL-----SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 443 ~~s~~Q~~iLllFn~~-~-~lt~~ei~~~t-----~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
.+|.--..||-.+-+. + .+|.++|.+.+ .++...+-++|..|++.|+|.+.
T Consensus 13 R~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli~~~ 70 (134)
T d1mzba_ 13 KVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRH 70 (134)
T ss_dssp CCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccEEEEE
Confidence 4555666777777443 3 69999998876 47889999999999999999754
No 143
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=25.92 E-value=18 Score=28.03 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHHHhhhhccccccCC
Q psy16234 575 FAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 575 F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+..+.+.+-+.|+.|.++|||.|..+
T Consensus 58 l~~~~~~vs~~i~~Le~~gli~r~~~ 83 (115)
T d1hsja1 58 SEFKPYYLTKALQKLKDLKLLSKKRS 83 (115)
T ss_dssp SCCCHHHHHHHHHHHHTTTTSCCEEC
T ss_pred HCCChhhHHHHHHHHHHcCCeEEEee
Confidence 56788999999999999999998654
No 144
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.78 E-value=52 Score=25.78 Aligned_cols=57 Identities=5% Similarity=0.209 Sum_probs=41.7
Q ss_pred hhhhhhc-cc-cCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q psy16234 548 AIVRIMK-SR-KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYS 606 (609)
Q Consensus 548 ~IVRiMK-~~-k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~~~~~y~ 606 (609)
+|..++. +. +.++.++|...+.+... .++...|=+.|+.|.+.|.|.+-..+.+...
T Consensus 20 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~--~i~~aTVYR~L~~l~e~gli~~~~~~~~~~~ 78 (134)
T d1mzba_ 20 KILQMLDSAEQRHMSAEDVYKALMEAGE--DVGLATVYRVLTQFEAAGLVVRHNFDGGHAV 78 (134)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHTSEEEECSSSSSCE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCC--CccHHHHHHHHHHHHhccEEEEEeecCCceE
Confidence 4555664 43 46999999988876543 5788999999999999999987655444333
No 145
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
Probab=25.58 E-value=54 Score=23.50 Aligned_cols=50 Identities=12% Similarity=0.249 Sum_probs=40.6
Q ss_pred ecHHHHHHHHhhcCCCCCCHHHHHHHh----CCCHHHHHHHHHHHHhcCccccC
Q psy16234 444 MQTFQMAILLLFEKNDAMTCGDIQTVL----SLSQDQIGRHIASLVECKLLTSN 493 (609)
Q Consensus 444 ~s~~Q~~iLllFn~~~~lt~~ei~~~t----~i~~~~l~~~L~~L~~~~iL~~~ 493 (609)
+|-....|+..+=+.+.+|+.||.+.+ +.+...+...|..|++.|+|...
T Consensus 7 Ls~~E~~IM~~lW~~~~~t~~ei~~~l~~~~~~~~tTv~T~L~rL~~KG~l~~~ 60 (82)
T d1p6ra_ 7 ISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp CCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHhccccCCcHhHHHHHHHHHHHCCCeEEE
Confidence 456677788766667789999987766 67888999999999999999754
No 146
>d1bjaa_ a.4.5.9 (A:) Transcription factor MotA, activation domain {Bacteriophage T4 [TaxId: 10665]}
Probab=25.43 E-value=48 Score=23.89 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=39.2
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHhcCccccCC
Q psy16234 448 QMAILLLFEKNDAMTCGDIQTVL-SLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 448 Q~~iLllFn~~~~lt~~ei~~~t-~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
-+.|+.+.-+++-+|..|+.+.+ .+....+..++..|++.|++.+++
T Consensus 18 ta~I~i~iaKk~FiTa~ev~e~~~~~~~avvnSNIGVliKKgliEKSG 65 (95)
T d1bjaa_ 18 TATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVEKSG 65 (95)
T ss_dssp HHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEEEET
T ss_pred hhHHHHHHHHhhchhHHHHHHHhHHhccceeecceeeeeecchhhccC
Confidence 45678888888899999999943 566778889999999999998874
No 147
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=25.29 E-value=19 Score=28.86 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=31.5
Q ss_pred hhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 548 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 548 ~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
.|...+-..+.++..+|- +. ...+.+.+-+.++.|..+|||+|.++
T Consensus 39 ~iL~~l~~~~~~t~~~la----~~---~~i~~~~vs~~l~~L~~~glv~r~~~ 84 (143)
T d1s3ja_ 39 FVLASLKKHGSLKVSEIA----ER---MEVKPSAVTLMADRLEQKNLIARTHN 84 (143)
T ss_dssp HHHHHHHHHSEEEHHHHH----HH---HTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHCCCCCHHHHH----HH---HCcCHHHHHHHHHHHHHhhhheeeee
Confidence 344444445555555444 22 34788999999999999999997544
No 148
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.06 E-value=30 Score=27.18 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=29.6
Q ss_pred cccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 555 SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 555 ~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
....++..+|... +..+.+.+.+.|..|+.+|||.|.++
T Consensus 40 ~~~~~t~~~la~~-------~~~~~~~vs~~v~~L~~~gli~r~~~ 78 (137)
T d2fbha1 40 HRDSPTQRELAQS-------VGVEGPTLARLLDGLESQGLVRRLAV 78 (137)
T ss_dssp CSSCCBHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred cCCCCcHHHHHHH-------HCCCHHHHHHHHHHHHHcCCccccCC
Confidence 3345676665533 35788999999999999999998754
No 149
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=23.61 E-value=14 Score=28.10 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=34.9
Q ss_pred hcCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHhcCccccCC
Q psy16234 455 FEKNDAM-TCGDIQTVLSLSQDQIGRHIASLVECKLLTSNK 494 (609)
Q Consensus 455 Fn~~~~l-t~~ei~~~t~i~~~~l~~~L~~L~~~~iL~~~~ 494 (609)
|..++.+ |..+|++..|++...+.+++..|...|+|...+
T Consensus 27 l~~G~~LPs~r~La~~~~vSr~tvr~Al~~L~~~Gli~~~~ 67 (100)
T d1v4ra1 27 LAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRG 67 (100)
T ss_dssp CCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEET
T ss_pred CCCcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEec
Confidence 3345778 999999999999999999999999999997654
No 150
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.44 E-value=38 Score=23.87 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=28.1
Q ss_pred EEecHHHHHHH-HhhcCCC----CCCHHHHHHHhCCCHHHHH
Q psy16234 442 VTMQTFQMAIL-LLFEKND----AMTCGDIQTVLSLSQDQIG 478 (609)
Q Consensus 442 l~~s~~Q~~iL-llFn~~~----~lt~~ei~~~t~i~~~~l~ 478 (609)
-+.|..|..+| ..|+..+ .-..++|+..+||++..++
T Consensus 6 ~~fT~~Ql~~Le~~F~~~n~yP~~~~r~~LA~~lgL~~~~Vq 47 (72)
T d1uhsa_ 6 ATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47 (72)
T ss_dssp CCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHccccCCHHHHHHHHHHhCCCHHHHH
Confidence 35678999999 5697532 3467899999999987654
No 151
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=23.33 E-value=35 Score=23.79 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=27.6
Q ss_pred cHHHHHHH-Hhh--cCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q psy16234 445 QTFQMAIL-LLF--EKNDAMTCGDIQTVLSLSQDQIGRHIAS 483 (609)
Q Consensus 445 s~~Q~~iL-llF--n~~~~lt~~ei~~~t~i~~~~l~~~L~~ 483 (609)
+.-+..|+ +-| +...+.|+++|++.+|++.+.+.+.-..
T Consensus 7 ~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrerVrqie~~ 48 (68)
T d2p7vb1 7 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAK 48 (68)
T ss_dssp CHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44445555 444 3557899999999999999887765443
No 152
>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.15 E-value=18 Score=26.01 Aligned_cols=59 Identities=22% Similarity=0.415 Sum_probs=35.8
Q ss_pred hhhhhhhhhhhhcccc------CCChHHHHHHHHHhhcCCCCChHHHHHHH--HHhhhhccccccCCCCCceeec
Q psy16234 542 KLYLQAAIVRIMKSRK------QIRHNALIQEVLSQSKSFAPSISMIKKCI--ESLIDKNYVERTANSTDEYSYV 608 (609)
Q Consensus 542 ~~~i~A~IVRiMK~~k------~l~~~~L~~~v~~~l~~F~~~~~~ik~~I--e~LIekeyl~r~~~~~~~y~Yi 608 (609)
+.-+=|.||+.||+|- .|+.+|+..|+. + ..+... -|.-+ |.|.+.-=|+-.+ +.|.+-
T Consensus 9 ~FgvLaKIV~~MK~RHq~g~~hPLtLeEiLDEt~-~---~Di~~~-~k~WL~~EAL~nNPKi~v~d---gKf~Fk 75 (81)
T d1d8ja_ 9 KFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQ-H---LDIGLK-QKQWLMTEALVNNPKIEVID---GKYAFK 75 (81)
T ss_dssp THHHHHHHHHHHHHHHHHTCCSCBCHHHHHHHHT-C---SSCCHH-HHHHHHTTHHHHCTTEEECS---SSEEEC
T ss_pred cchHHHHHHHHHHHHHhcCCCCCccHHHHHHHHh-h---ccccHH-HHHHHHhhhcccCCceeecC---Ceeeec
Confidence 3567799999999972 477887776653 2 333322 23333 5677766666542 456554
No 153
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.00 E-value=35 Score=23.24 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=34.8
Q ss_pred hhhhhhccc-cCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhcc-ccccC
Q psy16234 548 AIVRIMKSR-KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNY-VERTA 599 (609)
Q Consensus 548 ~IVRiMK~~-k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekey-l~r~~ 599 (609)
.|.+++++. +.++-++|..+ |.++...|.+-|+.|-+.|+ |.+..
T Consensus 11 ~Il~~L~~~~~~vs~~~La~~-------l~VS~~TI~rdi~~L~~~G~~I~~~~ 57 (65)
T d1j5ya1 11 SIVRILERSKEPVSGAQLAEE-------LSVSRQVIVQDIAYLRSLGYNIVATP 57 (65)
T ss_dssp HHHHHHHHCSSCBCHHHHHHH-------HTSCHHHHHHHHHHHHHHTCCCEEET
T ss_pred HHHHHHHHcCCCCcHHHHHHH-------HCCCHHHHHHHHHHHHHCCCeEEEeC
Confidence 466677654 56898877754 67999999999999999997 66543
No 154
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.88 E-value=41 Score=26.70 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=33.0
Q ss_pred hhhhhhhhc-cccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccCC
Q psy16234 546 QAAIVRIMK-SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600 (609)
Q Consensus 546 ~A~IVRiMK-~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~~ 600 (609)
+..|...+- ..+.++..+|-.. +..+.+.+-+.|+.|..+|||+|.++
T Consensus 36 q~~vL~~L~~~~g~~t~~~La~~-------~~~~~~~vs~~i~~L~~~glv~r~~~ 84 (145)
T d2hr3a1 36 QLVVLGAIDRLGGDVTPSELAAA-------ERMRSSNLAALLRELERGGLIVRHAD 84 (145)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHcCCeEeeeC
Confidence 334444442 3345777665533 56789999999999999999998654
No 155
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=22.76 E-value=19 Score=27.77 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCCChHHHHHHHHHhhhhccccccCCC
Q psy16234 575 FAPSISMIKKCIESLIDKNYVERTANS 601 (609)
Q Consensus 575 F~~~~~~ik~~Ie~LIekeyl~r~~~~ 601 (609)
...+.+.+-+.|..|.++|||.|..+.
T Consensus 59 l~~~~~tvs~~i~~Le~~gli~r~~~~ 85 (115)
T d2frha1 59 LNYKQPQVVKAVKILSQEDYFDKKRNE 85 (115)
T ss_dssp SSSHHHHHHHHHHHHHHTTSSCCBCCS
T ss_pred HCCCHhHHHHHHHHHHhhhhheeeecc
Confidence 457889999999999999999987543
No 156
>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}
Probab=20.80 E-value=73 Score=23.74 Aligned_cols=55 Identities=7% Similarity=0.216 Sum_probs=46.2
Q ss_pred hhhhhhhhhhhhccccCCChHHHHHHHHHhhcC-CCCChHHHHHHHHHhhhhccccc
Q psy16234 542 KLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVER 597 (609)
Q Consensus 542 ~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~-F~~~~~~ik~~Ie~LIekeyl~r 597 (609)
+-.++.+|-.++.. +.+.=-+|.+++...... +.++.+.|=..+..|.++|+|+.
T Consensus 5 ~g~l~~~IL~lL~~-~~~~GYei~~~l~~~~~~~~~is~gslY~~L~rLe~~GlI~~ 60 (103)
T d1xmaa_ 5 RGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKS 60 (103)
T ss_dssp GGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred cccHHHHHHHHHhh-CCccHHHHHHHHHHHcCCeecCCCCchHHHHHHHHHCCCeEE
Confidence 45678888888876 457778899888877766 88999999999999999999974
No 157
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=20.74 E-value=29 Score=24.60 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q psy16234 458 NDAMTCGDIQTVLSLSQDQIGRHIASLV 485 (609)
Q Consensus 458 ~~~lt~~ei~~~t~i~~~~l~~~L~~L~ 485 (609)
+..-|.+||++.+||+.+++...+....
T Consensus 24 GR~Pt~~EiA~~lg~s~~e~~~~l~~~~ 51 (77)
T d1rp3a1 24 GREPTDEEVAKELGISTEELFKTLDKIN 51 (77)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 3456999999999999999998876543
No 158
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.17 E-value=59 Score=22.82 Aligned_cols=55 Identities=25% Similarity=0.212 Sum_probs=40.2
Q ss_pred hhhhhhhhhhccccCCChHHHHHHHHHhhcCCCCChHHHHHHHHHhhhhccccccC
Q psy16234 544 YLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 599 (609)
Q Consensus 544 ~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~F~~~~~~ik~~Ie~LIekeyl~r~~ 599 (609)
.|-+|| .-|+.|+..+...|...+...-.--..-...++++|..++++|-|.+..
T Consensus 8 MI~eAI-~al~er~GsS~~AI~kyI~~~y~~~~~~~~~l~~aLk~~v~~G~l~q~k 62 (74)
T d1hsta_ 8 MIAAAI-RAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTK 62 (74)
T ss_dssp HHHHHH-HTCCCSSCEEHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHH-HHcCCCCCcCHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHcCcEEeec
Confidence 344555 4479999999999998887654210111577999999999999998865
Done!