RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16234
(609 letters)
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 276
Score = 262 bits (671), Expect = 4e-84
Identities = 129/275 (46%), Positives = 173/275 (62%), Gaps = 11/275 (4%)
Query: 252 PSKSPEYLAKYCDMLLKKSSKGLSESEMDDKLSQSITVFKYIDDKDVFHKFYAKMLAKRL 311
SKSPE LA+YCD LLKKSSK E+E++D L+Q + VFKYI+DKDVF KFYAKMLAKRL
Sbjct: 5 SSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRL 64
Query: 312 IHQQSTSMDGEEAMINKLKQACGYEFTNKFHRMLTDIKISGGLNEKFHSEFVKTNEIDLG 371
+HQ S S D E +MI+KLKQACG+E+T+K RM DI +S LNE+F TN L
Sbjct: 65 VHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKH--LTNSEPLD 122
Query: 372 IHFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWLHNISQVEL 431
+ FSI +L +GSWP + +F++P ELE+ F FY + +GRKL+WL+ +S+ EL
Sbjct: 123 LDFSIQVLSSGSWPFQQSC--TFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGEL 180
Query: 432 KLSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491
+ K Y + TFQMAILL + DA T + + D + + + L++ KLL
Sbjct: 181 VTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLV 240
Query: 492 SNKE-------ELTEDTEIRLNLGYNNKRTKLKIS 519
E EL DT I+L LGY NK+ ++ I+
Sbjct: 241 LEDENANVDEVELKPDTLIKLYLGYKNKKLRVNIN 275
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 273
Score = 257 bits (658), Expect = 3e-82
Identities = 77/276 (27%), Positives = 139/276 (50%), Gaps = 7/276 (2%)
Query: 253 SKSPEYLAKYCDMLLKKSSKGLSESEMDDKLSQSITVFKYIDDKDVFHKFYAKMLAKRLI 312
+K E +AK+ D L+ +K ++ E++ L + + +F++I KDVF FY K LAKRL+
Sbjct: 1 NKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLL 60
Query: 313 HQQSTSMDGEEAMINKLKQACGYEFTNKFHRMLTDIKISGGLNEKFHSEFVKTNEIDLGI 372
+S S+D E++M++KLK CG FT+K M D+++S + F + ++ I
Sbjct: 61 VGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFK-QHMQNQSDSGPI 119
Query: 373 HFSINILQAGSWPLGPTVISSFSVPQELEKCIHMFEKFYHGQFNGRKLSWLHNISQVELK 432
++NIL G WP + + E+ K +F+ FY G+ +GRKL W + LK
Sbjct: 120 DLTVNILTMGYWPTYTPM--EVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLK 177
Query: 433 LSYLKRPYFVTMQTFQMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLL-- 490
+ + + FQ +LL+F + D + +I+ + ++ R + SL K
Sbjct: 178 AEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVL 237
Query: 491 --TSNKEELTEDTEIRLNLGYNNKRTKLKISGAVQK 524
+ +E+ + + N + +K ++KI+ K
Sbjct: 238 IKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMK 273
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 394
Score = 147 bits (373), Expect = 7e-40
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 2/178 (1%)
Query: 69 LYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNRSVRFLHVSSYPK 128
+Y + FE+QFL + +Y E+++ LQ V++YM++ L EE R +LH S+ +
Sbjct: 211 VYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDE 270
Query: 129 VKAKCEQHMVADHLNFLQGECVPMVAEERRHDLANMYPLLRSVREGINILIDAVRDHICK 188
+ KCEQ ++ HL E ++ ++ DL MY L+ +++G+ L + HI
Sbjct: 271 LARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHN 330
Query: 189 QGLEAISGL--SGDNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGALDKACSSVIN 244
QGL AI + N +V+ +L VHKKY A V F+ D F+ ALDKAC IN
Sbjct: 331 QGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFIN 388
Score = 42.8 bits (100), Expect = 8e-05
Identities = 25/193 (12%), Positives = 62/193 (32%), Gaps = 34/193 (17%)
Query: 11 NKTWGSLQETIQGVITLGNVRRATWNDRFSDIYSLCVAYPEP------------------ 52
++ W L+ IQ V T ++ ++ + + ++ +Y+ C + +
Sbjct: 2 DQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQT 61
Query: 53 ------LADRLYQETKLFLDQHL------YVDIFETQFLEMSGEWYKSEASKLLQTCNVS 100
+ LY+ K FL +L D+ + L+ + ++ +
Sbjct: 62 PGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGIC 121
Query: 101 QYMERVLQVLHEETNRSVRFLHVSSYPKVKAKCEQHMVADHLNFLQGECVPMVAEERRHD 160
Y+ R + R + Y + + + ++ +ER +
Sbjct: 122 AYLNRHWVRRECDEGRKGIY---EIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGE 178
Query: 161 LANMYPLLRSVRE 173
N L+ V +
Sbjct: 179 TINT-RLISGVVQ 190
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 347
Score = 144 bits (364), Expect = 5e-39
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 4/191 (2%)
Query: 57 LYQETKLFLDQHLYVDIFETQFLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLHEETNR 116
L + D +Y D FE +FLE + Y +E +L+Q V +Y+ V + L EE +R
Sbjct: 160 LRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDR 219
Query: 117 SVRFLHVSSYPKVKAKCEQHMVADHLN-FLQGECVPMVAEERRHDLANMYPLLRSVREGI 175
+ +L S+ + A E+ ++ +HL LQ ++ E R DLA MY L VR G
Sbjct: 220 VITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQ 279
Query: 176 NILIDAVRDHICKQGLEAISGLSGDNISTQFVENMLAVHKKYKAFVKELFSGDQSFMGAL 235
L+ ++I G + D V+++L K ++ F ++ F+ +
Sbjct: 280 QALLQHWSEYIKTFGTAIVINPEKDK---DMVQDLLDFKDKVDHVIEVCFQKNERFVNLM 336
Query: 236 DKACSSVINHK 246
++ + IN +
Sbjct: 337 KESFETFINKR 347
Score = 46.2 bits (109), Expect = 7e-06
Identities = 43/366 (11%), Positives = 112/366 (30%), Gaps = 74/366 (20%)
Query: 10 FNKTWGSLQETIQGVITLGNVRRATWNDRFSDIYSLCVAYPEPLADRLYQETKLFLDQHL 69
TW L E ++ V + R + + + +LC + LY++ + + H+
Sbjct: 5 TQDTWRKLHEAVRAVQS-STSIRYNLEELYQAVENLCSHKV---SPMLYKQLRQACEDHV 60
Query: 70 YVDIFETQ--------FLEMSGEWYKSEASKLLQTCNVSQYMERVLQVLH------EETN 115
I + FL+ ++ +++ ++ +++R + + +
Sbjct: 61 QAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMG 120
Query: 116 RSVRFLHVSSYPKVKAKCEQHMVADHLNFLQGECVPMVAEERRHDLANMYPLLRSVREGI 175
+ H+ S V++K ++ ++ ER + + LLRS+ +
Sbjct: 121 LELFRTHIISDKMVQSKTIDGILL------------LIERERSGEAVDR-SLLRSLLGML 167
Query: 176 NIL-----------IDAVRDHICKQGLEAISGLSGDNISTQFVENMLAVHKKYKAFVKEL 224
+ L ++ +G + V L
Sbjct: 168 SDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPE-YLNHVSKRLEEEGDRVITYL-- 224
Query: 225 FSGDQSFMGALDKACSSVINHKFDPKMPSKSPEYLAKYCDMLLKKSSKGLSESEMDDKLS 284
D S L + L ++ +L+K L + L+
Sbjct: 225 ---DHSTQKPLIACVEK---------------QLLGEHLTAILQKGLDHLLDENRVPDLA 266
Query: 285 QSITVFKYIDDKDVFHKFYAKMLAKRLIHQQSTSM---DGEEAMINKLKQACGYEFTNKF 341
Q +F + + + ++ + + + + ++ M+ L +F +K
Sbjct: 267 QMYQLFSRVRGGQ---QALLQHWSEYIKTFGTAIVINPEKDKDMVQDL-----LDFKDKV 318
Query: 342 HRMLTD 347
++
Sbjct: 319 DHVIEV 324
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 92
Score = 115 bits (290), Expect = 1e-31
Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 520 GAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPS 578
A Q E+ E + T VD+DRK ++AAIVRIMKSRK+++HN L+ EV Q K+ F PS
Sbjct: 2 AAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPS 61
Query: 579 ISMIKKCIESLIDKNYVERTANSTDEYSYVA 609
+IKK IE LI++ Y+ RT Y+YVA
Sbjct: 62 PVVIKKRIEGLIEREYLARTPEDRKVYTYVA 92
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 114 bits (286), Expect = 4e-31
Identities = 46/89 (51%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 522 VQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSIS 580
++ E QE E T +++EDRKL +QAAIVRIMK RK ++H L+ EVL+Q S F P +
Sbjct: 2 MKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVP 61
Query: 581 MIKKCIESLIDKNYVERTANSTDEYSYVA 609
+IKKCI+ LI+K Y+ER D YSY+A
Sbjct: 62 VIKKCIDILIEKEYLERVDGEKDTYSYLA 90
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 84
Score = 112 bits (282), Expect = 1e-30
Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 525 ETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKK 584
ET +E T V +DR+ + AAIVRIMK RK + HN L+ E+ +Q K F +KK
Sbjct: 1 ETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK-FPVKPGDLKK 59
Query: 585 CIESLIDKNYVERTANSTDEYSYVA 609
IESLID++Y+ER ++ ++Y YVA
Sbjct: 60 RIESLIDRDYMERDKDNPNQYHYVA 84
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein
PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Length = 194
Score = 38.1 bits (88), Expect = 0.001
Identities = 21/164 (12%), Positives = 59/164 (35%), Gaps = 17/164 (10%)
Query: 449 MAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEE-----------L 497
IL L K ++ L + Q + H+ L E L+ S E+ +
Sbjct: 18 RRILFLLTKRP-YFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMI 76
Query: 498 TEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRK 557
+ + + L +++ + V+K E + + E + ++ + + +
Sbjct: 77 KKGLRLEILLTPTLFGSEMYEAKGVRKSPEYEQAKELIKSQEPINVKMRELAEFLHELNE 136
Query: 558 QIRHNALIQEVLSQSKS-----FAPSISMIKKCIESLIDKNYVE 596
+IR + L +++ ++ + + +I++ + +
Sbjct: 137 RIREIIEEKRELEEARILIETYIENTMRRLAEENRQIIEEIFRD 180
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein
CadC {Staphylococcus aureus [TaxId: 1280]}
Length = 108
Score = 36.0 bits (83), Expect = 0.002
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 449 MAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKE 495
I +++ + DI +L ++ H+ +L + ++ KE
Sbjct: 34 AKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKE 80
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus),
pcc7942 [TaxId: 1129]}
Length = 98
Score = 32.8 bits (75), Expect = 0.020
Identities = 9/47 (19%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 449 MAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKE 495
+ +L L +++ + GD+ + +S+ + + SL +L++ K+
Sbjct: 26 LRLLSLLARSE-LCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 71
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 190
Score = 32.3 bits (73), Expect = 0.089
Identities = 22/152 (14%), Positives = 43/152 (28%), Gaps = 11/152 (7%)
Query: 449 MAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEELTEDTEIRLNLG 508
IL L +N MT + +L + I HI L E L+ + E +
Sbjct: 22 RKILKLL-RNKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTE----------MK 70
Query: 509 YNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEV 568
N + V + + + R R+ ++ ++ +
Sbjct: 71 GNLVEKYYGRTADVFYINLYLGDEELRYIARSRLKTKIDIFKRLGYQFEENELLNIMDRM 130
Query: 569 LSQSKSFAPSISMIKKCIESLIDKNYVERTAN 600
+ IS + E + E +
Sbjct: 131 SQKEFDATVRISKYIEEKEDALKDFSNEDIIH 162
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA
{Staphylococcus aureus [TaxId: 1280]}
Length = 94
Score = 30.8 bits (70), Expect = 0.11
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 449 MAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKE 495
+ I+ L ++ + G I L+LSQ + + L L+ + ++
Sbjct: 21 IRIMELLSVSE-ASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 66
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate
cyclase, RPTC {Escherichia coli [TaxId: 562]}
Length = 239
Score = 28.2 bits (63), Expect = 2.4
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 346 TDIKISGGLNEKF--HSEFVKT----NEIDLGIHFSINILQAGSWPLG 387
+ +++SGG + ++F++ +GIH +L+ G +P G
Sbjct: 113 SRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQTTLLRHGFYPAG 160
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 75
Score = 26.2 bits (58), Expect = 3.0
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 444 MQTFQ--MAILLLF-EKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491
M T + IL + ++ +I ++S +++ L E +
Sbjct: 1 MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVL 51
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007
N-terminal domain {Vibrio cholerae [TaxId: 666]}
Length = 71
Score = 25.9 bits (57), Expect = 3.5
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 450 AILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLT 491
+ L ++ ++ D+ L+ I + L++ L+
Sbjct: 10 RVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIH 51
>d1r4pa_ d.165.1.2 (A:) Shiga toxin, A-chain {Shigella dysenteriae,
toxin II [TaxId: 622]}
Length = 297
Score = 27.2 bits (60), Expect = 5.6
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 10/40 (25%)
Query: 5 PKQVDFNKTWGSLQETIQ----------GVITLGNVRRAT 34
P VD WG + + G I+ N+
Sbjct: 193 PGDVDLTLNWGRISNVLPEYRGEDGVRVGRISFNNISAIL 232
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 100
Score = 26.0 bits (56), Expect = 6.3
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 448 QMAILLLFEKNDAMTCGDIQTVLSLSQDQIGRHIASLVECKLLTSNKEE 496
++ I++ IQ VL L+ + HI L L+ + K
Sbjct: 18 RLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI 66
>d2rhwa1 c.69.1.10 (A:4-286)
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
(BPHD) {Burkholderia xenovorans [TaxId: 36873]}
Length = 283
Score = 27.1 bits (58), Expect = 7.1
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 354 LNEKFHSEFVKTNEIDLGIHFSINILQAGSWPLGPTVI 391
L E S+FVK NE +I+ +AG+ G TVI
Sbjct: 1 LTESSTSKFVKINEKGFSDF-NIHYNEAGN---GETVI 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.382
Gapped
Lambda K H
0.267 0.0370 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,151,709
Number of extensions: 99288
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 28
Length of query: 609
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 518
Effective length of database: 1,158,166
Effective search space: 599929988
Effective search space used: 599929988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.3 bits)