BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16237
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|C Chain C, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|E Chain E, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|G Chain G, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
Length = 368
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 20 ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKS 79
EL DT I+L LGY NK+ ++ I+ ++ E QE E T +++EDRKL +QAAIVRIMK
Sbjct: 254 ELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKM 313
Query: 80 RKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
RK ++H L+ EVL+Q S F P + +IKKCI+ LI+K Y+ER D YSY+A
Sbjct: 314 RKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 368
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 366
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 20 ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKS 79
EL DT I+L LGY NK+ ++ I+ ++ E QE E T +++EDRKL +QAAIVRIMK
Sbjct: 252 ELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKM 311
Query: 80 RKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
RK ++H L+ EVL+Q S F P + +IKKCI+ LI+K Y+ER D YSY+A
Sbjct: 312 RKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 366
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 20 ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKS 79
EL DT I+L LGY NK+ ++ I+ ++ E QE E T +++EDRKL +QAAIVRIMK
Sbjct: 646 ELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKM 705
Query: 80 RKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
RK ++H L+ EVL+Q S F P + +IKKCI+ LI+K Y+ER D YSY+A
Sbjct: 706 RKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 20 ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKS 79
EL DT I+L LGY NK+ ++ I+ ++ E QE E T +++EDRKL +QAAIVRIMK
Sbjct: 662 ELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKM 721
Query: 80 RKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
RK ++H L+ EVL+Q S F P + +IKKCI+ LI+K Y+ER D YSY+A
Sbjct: 722 RKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 77
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 59 SSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKN 117
S+++EDRKL +QAAIVRIMK RK ++H L+ EVL+Q S F P + +IKKCI+ LI+K
Sbjct: 2 SNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKE 61
Query: 118 YVERTANSTDEYSYVA 133
Y+ER D YSY+A
Sbjct: 62 YLERVDGEKDTYSYLA 77
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue
Length = 92
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 44 GAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPS 102
A Q E+ E + T VD+DRK ++AAIVRIMKSRK+++HN L+ EV Q K+ F PS
Sbjct: 2 AAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPS 61
Query: 103 ISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
+IKK IE LI++ Y+ RT Y+YVA
Sbjct: 62 PVVIKKRIEGLIEREYLARTPEDRKVYTYVA 92
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 19 KELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMK 78
KE+ + + N + +K ++KI+ KET +E T V +DR+ + AAIVRIMK
Sbjct: 629 KEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMK 688
Query: 79 SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
RK + HN L+ E+ +Q K F +KK IESLID++Y+ER ++ ++Y YVA
Sbjct: 689 MRKTLGHNLLVSELYNQLK-FPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 742
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 19 KELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMK 78
KE+ + + N + +K ++KI+ KET +E T V +DR+ + AAIVRIMK
Sbjct: 646 KEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMK 705
Query: 79 SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
RK + HN L+ E+ +Q K F +KK IESLID++Y+ER ++ ++Y YVA
Sbjct: 706 MRKTLGHNLLVSELYNQLK-FPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Query: 30 NLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALI 89
N + +K ++KI+ KET +E T V +DR+ + AAIVRIMK RK + HN L+
Sbjct: 639 NDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLV 698
Query: 90 QEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
EV +Q K F + +KK IESLID++Y+ER + ++Y+Y+A
Sbjct: 699 SEVYNQLK-FPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 741
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Query: 30 NLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALI 89
N + +K ++KI+ KET +E T V +DR+ + AAIVRIMK RK + HN L+
Sbjct: 624 NDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLV 683
Query: 90 QEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
EV +Q K F + +KK IESLID++Y+ER + ++Y+Y+A
Sbjct: 684 SEVYNQLK-FPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 726
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of
Human Cul-4b
Length = 101
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 43 SGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPS 102
SG KET +E T V +DR+ + AAIVRIMK RK + HN L+ EV +Q K F
Sbjct: 6 SGIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK-FPVK 64
Query: 103 ISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
+ +KK IESLID++Y+ER + ++Y+Y+A
Sbjct: 65 PADLKKRIESLIDRDYMERDKENPNQYNYIA 95
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
Length = 88
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Query: 53 EIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQS-KSFAPSISMIKKCIE 111
E ER ++ +R+++L+A IVRIMK+++ + H L+ E ++QS + F +SM+K+ I+
Sbjct: 8 EDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAID 67
Query: 112 SLIDKNYVERTANSTDEYSYVA 133
SLI K Y++R + + Y+Y+A
Sbjct: 68 SLIQKGYLQR-GDDGESYAYLA 88
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|D Chain D, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|F Chain F, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|H Chain H, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|J Chain J, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
Length = 76
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Query: 59 SSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQS-KSFAPSISMIKKCIESLIDKN 117
S ++ +R+++L+A IVRIMK+++ + H L+ E ++QS + F +SM+K+ I+SLI K
Sbjct: 2 SELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKG 61
Query: 118 YVERTANSTDEYSYVA 133
Y++R + + Y+Y+A
Sbjct: 62 YLQR-GDDGESYAYLA 76
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 17 SVKELTEDTEIRLNLGYN-------NKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYL 69
S K+ TE T +N ++ KR K+ + G +Q T + E + + R L
Sbjct: 258 SPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRT 317
Query: 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDE 128
Q AI++IMK RK+I + L E++ K+ F P MIK+ IE LI+ Y+ R + +
Sbjct: 318 QEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINT 377
Query: 129 YSYVA 133
+ Y+A
Sbjct: 378 FIYMA 382
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|D Chain D, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 8/125 (6%)
Query: 17 SVKELTEDTEIRLNLGYN-------NKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYL 69
S K+ TE T +N ++ KR K+ + G +Q T + E + + R L
Sbjct: 258 SPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERXREEENEGIVQLRILRT 317
Query: 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDE 128
Q AI++I K RK+I + L E++ K+ F P IK+ IE LI+ Y+ R + +
Sbjct: 318 QEAIIQIXKXRKKISNAQLQTELVEILKNXFLPQKKXIKEQIEWLIEHKYIRRDESDINT 377
Query: 129 YSYVA 133
+ Y A
Sbjct: 378 FIYXA 382
>pdb|3PQA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3PQA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3PQA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3PQA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3RHD|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
pdb|3RHD|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
pdb|3RHD|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
pdb|3RHD|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
Length = 486
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 18/104 (17%)
Query: 29 LNLGYNNKRTKLKISGAVQKETPQEIERTVS-SVDEDRKLYLQAAIVRIMKSRKQIRHNA 87
LN+G N K + + E + +E+ V ++DE KL L K K + +
Sbjct: 302 LNVG-NPLDEKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLLGG------KRDKALFYPT 354
Query: 88 LIQ----EVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTD 127
+++ +L ++++FAP I +I+ E +ID ANST+
Sbjct: 355 ILEVDRDNILCKTETFAPVIPIIRTNEEEMID------IANSTE 392
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|C Chain C, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 282
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 20 ELTEDTEIRLNLGYNNKRTKLKIS 43
EL DT I+L LGY NK+ ++ I+
Sbjct: 254 ELKPDTLIKLYLGYKNKKLRVNIN 277
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 27.3 bits (59), Expect = 2.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 5 NSMDGSCPGYIISVKELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERT 57
N SC G + +++ E + + KRT+L + +QK T QE+ RT
Sbjct: 166 NPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVART 218
>pdb|3VX6|A Chain A, Crystal Structure Of Kluyveromyces Marxianus Atg7ntd
pdb|3VX7|A Chain A, Crystal Structure Of Kluyveromyces Marxianus Atg7ntd-Atg10
Complex
Length = 283
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 15 IISVKELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIE 55
IIS K + D++I ++ N ISG +QK TP ++
Sbjct: 154 IISSKVIASDSDISVSFIKQNVIIACVISGVIQKATPDNLK 194
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 92 VLSQSKSFAPSISMIKKCIESL------IDKNYVERTANSTDEYSYV 132
+ +S+ + P ++K +E L + KN+ ER N D+YS +
Sbjct: 643 MFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSEI 689
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 92 VLSQSKSFAPSISMIKKCIESL------IDKNYVERTANSTDEYSYV 132
+ +S+ + P ++K +E L + KN+ ER N D+YS +
Sbjct: 643 MFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSEI 689
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 26.2 bits (56), Expect = 6.0, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 92 VLSQSKSFAPSISMIKKCIESL------IDKNYVERTANSTDEYSYV 132
+ +S+ + P ++K +E L + KN+ ER N D+YS +
Sbjct: 644 MFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSEI 690
>pdb|109L|A Chain A, Structural Basis Of Alpha-Helix Propensity At Two Sites In
T4 Lysozyme
Length = 164
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 20 ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSV---DEDRKLYLQ---AAI 73
++ +DTE +G + TK A +KE + I R + V DE KL+ Q AA+
Sbjct: 16 KIYKDTEGYYTIGIGHLLTKSPSLNAAKKELDKAIGRNTNGVITKDEAEKLFNQDVDAAV 75
Query: 74 VRIMKSRK---------QIRHNALIQEVLSQSKS----FAPSISMIKK 108
I+++ K +R ALI V ++ F S+ M+++
Sbjct: 76 RGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQ 123
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 26.2 bits (56), Expect = 6.4, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 92 VLSQSKSFAPSISMIKKCIESL------IDKNYVERTANSTDEYSYV 132
+ +S+ + P ++K +E L + KN+ ER N D+YS +
Sbjct: 687 MFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSEI 733
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 14 YIISVKELTEDTEIRLNLGYNNKRTKLKISGAVQ 47
Y+++V E+ ED E +N+G KR K+ A++
Sbjct: 88 YVLTVTEILEDWEDSVNIG--RKREWFKVEDAIK 119
>pdb|2VE7|C Chain C, Crystal Structure Of A Bonsai Version Of The Human Ndc80
Complex
pdb|2VE7|D Chain D, Crystal Structure Of A Bonsai Version Of The Human Ndc80
Complex
pdb|3IZ0|D Chain D, Human Ndc80 Bonsai Decorated Microtubule
pdb|3IZ0|F Chain F, Human Ndc80 Bonsai Decorated Microtubule
Length = 250
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 15 IISVKELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAI 73
I +E +T + Y + K++ A +E ++ER VDED + + +A+
Sbjct: 132 FIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAV 190
>pdb|2FTC|A Chain A, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
Length = 189
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 14 YIISVKELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSS----VDEDRKLYL 69
+ ++V E+ + RL N K KL ++ ++ P+ +E + VDE+R+ +L
Sbjct: 74 FYVAVPEIMPELN-RLRKKLNKKYPKLS-RNSIGRDIPKMLELFKNGHEIKVDEERENFL 131
Query: 70 QAAIVRIMKSRKQIRHN--ALIQEV 92
Q I + S QI N A+I EV
Sbjct: 132 QTKIATLDMSSDQIAANLQAVINEV 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,266,490
Number of Sequences: 62578
Number of extensions: 101903
Number of successful extensions: 275
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 43
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)