BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16237
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D4H8|CUL2_MOUSE Cullin-2 OS=Mus musculus GN=Cul2 PE=1 SV=2
Length = 745
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 102/129 (79%), Gaps = 10/129 (7%)
Query: 15 IISVKELTEDTE---------IRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDR 65
++ VK + D+E LN+ +++KRTK KI+ ++QK+TPQE+E+T S+VDEDR
Sbjct: 617 LLDVKMINHDSEKEDIDAESSFSLNMSFSSKRTKFKITTSMQKDTPQELEQTRSAVDEDR 676
Query: 66 KLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTAN 124
K+YLQAAIVRIMK+RK +RHNALIQEV+SQS++ F PSISMIKKCIE LIDK Y+ER+
Sbjct: 677 KMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQA 736
Query: 125 STDEYSYVA 133
S DEYSYVA
Sbjct: 737 SADEYSYVA 745
>sp|Q5RCF3|CUL2_PONAB Cullin-2 OS=Pongo abelii GN=CUL2 PE=2 SV=1
Length = 745
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 102/129 (79%), Gaps = 10/129 (7%)
Query: 15 IISVKELTEDTE---------IRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDR 65
++ VK + D+E LN+ +++KRTK KI+ ++QK+TPQE+E+T S+VDEDR
Sbjct: 617 LLDVKMINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSMQKDTPQEMEQTRSAVDEDR 676
Query: 66 KLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTAN 124
K+YLQAAIVRIMK+RK +RHNALIQEV+SQS++ F PSISMIKKCIE LIDK Y+ER+
Sbjct: 677 KMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQA 736
Query: 125 STDEYSYVA 133
S DEYSYVA
Sbjct: 737 SADEYSYVA 745
>sp|Q13617|CUL2_HUMAN Cullin-2 OS=Homo sapiens GN=CUL2 PE=1 SV=2
Length = 745
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 102/129 (79%), Gaps = 10/129 (7%)
Query: 15 IISVKELTEDTE---------IRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDR 65
++ VK + D+E LN+ +++KRTK KI+ ++QK+TPQE+E+T S+VDEDR
Sbjct: 617 LLDVKMINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSMQKDTPQEMEQTRSAVDEDR 676
Query: 66 KLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTAN 124
K+YLQAAIVRIMK+RK +RHNALIQEV+SQS++ F PSISMIKKCIE LIDK Y+ER+
Sbjct: 677 KMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQA 736
Query: 125 STDEYSYVA 133
S DEYSYVA
Sbjct: 737 SADEYSYVA 745
>sp|Q9XZJ3|CUL2_DICDI Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 SV=1
Length = 771
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 26 EIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRH 85
E +N Y+NKR+K+K+S ++QKETP + E T +DEDRKLYLQA+IVRIMK+RK + H
Sbjct: 663 EYTVNSAYSNKRSKVKVSSSLQKETPLQNEETYKGIDEDRKLYLQASIVRIMKARKTMNH 722
Query: 86 NALIQEVLSQSK-SFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
+LIQEV+ S+ F P+I MIKKCIE LI+K Y+ R +D Y Y A
Sbjct: 723 VSLIQEVIEHSRLRFQPNIPMIKKCIEQLIEKEYITRAEGESDRYLYAA 771
>sp|Q5R4G6|CUL1_PONAB Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1
Length = 776
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 20 ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKS 79
EL DT I+L LGY NK+ ++ I+ ++ E QE E T +++EDRKL +QAAIVRIMK
Sbjct: 662 ELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKM 721
Query: 80 RKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
RK ++H L+ EVL+Q S F P + +IKKCI+ LI+K Y+ER D YSY+A
Sbjct: 722 RKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776
>sp|Q13616|CUL1_HUMAN Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2
Length = 776
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 20 ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKS 79
EL DT I+L LGY NK+ ++ I+ ++ E QE E T +++EDRKL +QAAIVRIMK
Sbjct: 662 ELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKM 721
Query: 80 RKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
RK ++H L+ EVL+Q S F P + +IKKCI+ LI+K Y+ER D YSY+A
Sbjct: 722 RKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776
>sp|Q9WTX6|CUL1_MOUSE Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1
Length = 776
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 20 ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKS 79
EL DT I+L LGY NK+ ++ I+ ++ E QE E T +++EDRKL +QAAIVRIMK
Sbjct: 662 ELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKM 721
Query: 80 RKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
RK ++H L+ EVL+Q S F P + +IKKCI+ LI+K Y+ER D YSY+A
Sbjct: 722 RKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776
>sp|O60999|CUL1_DICDI Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1
Length = 770
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 80/116 (68%), Gaps = 1/116 (0%)
Query: 19 KELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMK 78
+E+ + T+ LN + NK+TK+ I+ V + +EI+ +V+EDRKL +QAAIVRIMK
Sbjct: 655 EEIAKTTKFSLNKQFKNKKTKIFINVPVLTQVKEEIDSIHKTVEEDRKLQIQAAIVRIMK 714
Query: 79 SRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
RKQ+ H+ L+ EV+SQ ++ F P +++IKKCI+ LI+K Y+ R D YSYVA
Sbjct: 715 MRKQLAHSGLMTEVISQLQTRFNPKVNIIKKCIDILIEKEYLMRVEGKKDHYSYVA 770
>sp|Q17390|CUL2_CAEEL Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 SV=3
Length = 850
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 79/117 (67%), Gaps = 3/117 (2%)
Query: 19 KELTEDTEIRLNLGYNNKRTKLKISGA-VQKETPQEIERTVSSVDEDRKLYLQAAIVRIM 77
+ LT D+ +RLN+ +KR K ++ V K +E E ++V +DRK Y++ AIVRIM
Sbjct: 735 QNLTADSLVRLNMSMTSKRMKFRLQAPQVNKAVEKEQEAVANTVSQDRKYYMECAIVRIM 794
Query: 78 KSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
K+RK ++HNAL+ E++ Q+K F+P + IKK IE LI+K Y++RT + DEY Y+A
Sbjct: 795 KTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRT-DQNDEYQYLA 850
>sp|Q24311|CUL1_DROME Cullin homolog 1 OS=Drosophila melanogaster GN=lin19 PE=1 SV=2
Length = 774
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 21 LTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSR 80
LT ++ + L L Y NK+ ++ I+ ++ E E E ++EDRKL +QAAIVRIMK R
Sbjct: 661 LTPESTVELFLDYKNKKRRININQPLKTELKVEQETVHKHIEEDRKLLIQAAIVRIMKMR 720
Query: 81 KQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
K++ H LI EVL+Q S F P + +IKKCI+ LI+K Y+ER D YSY+A
Sbjct: 721 KRLNHTNLISEVLNQLSTRFKPKVPVIKKCIDILIEKEYLERMEGHKDTYSYLA 774
>sp|Q21346|CUL6_CAEEL Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 SV=1
Length = 729
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 13/131 (9%)
Query: 5 NSMDGSCPGYIISVKELTEDTEIRLNLGYNNKRTKLKISGAVQKETP-QEIERTVSSVDE 63
N DG P ++S LN Y NK+ ++ ++ A++K T +E + ++V+
Sbjct: 610 NEKDGYPPDAVVS-----------LNTKYANKKVRVDLTTAIKKATADRETDAVQNTVES 658
Query: 64 DRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERT 122
DRK ++A IVRIMK+RK + H LI E++SQ KS F P++ MIK CIE LI++ Y+ R+
Sbjct: 659 DRKYEIKACIVRIMKTRKSLTHTLLINEIISQLKSRFTPNVQMIKICIEILIEQLYIRRS 718
Query: 123 ANSTDEYSYVA 133
N + Y Y+A
Sbjct: 719 ENEHNVYEYLA 729
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1
Length = 769
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 19 KELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMK 78
K + E N + +K ++K+ VQKETP E + T VDEDRK ++A+IVRIMK
Sbjct: 654 KSIDESDVFAFNTKFKSKLFRVKVMAVVQKETPVEEKETRDKVDEDRKHQIEASIVRIMK 713
Query: 79 SRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
+RK + H+ L+ EV+ Q +S F P+ ++KK IESLI++ Y+ER+ Y+Y+A
Sbjct: 714 ARKTLEHSNLVSEVIKQLQSRFVPNPVIVKKRIESLIEREYLERSKQDRKIYNYMA 769
>sp|O13790|CUL1_SCHPO Cullin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cul1 PE=1 SV=1
Length = 767
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 73/107 (68%), Gaps = 3/107 (2%)
Query: 28 RLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNA 87
++N + K+ +++++ ++ E QE T +++EDRKL LQ+AIVRIMK+R+ ++H
Sbjct: 663 KINENFRMKKIRVQLNLPIRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKARRTLKHVV 722
Query: 88 LIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
L++E + Q KS F P +S IK+CI+ LI+K Y+ER DEY Y+A
Sbjct: 723 LVKETIDQIKSRFTPKVSDIKQCIDMLIEKEYLERQGR--DEYIYLA 767
>sp|Q17389|CUL1_CAEEL Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 SV=1
Length = 780
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 27 IRLNLGYNNKRTKLKISGAVQKETP-QEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRH 85
+ LN Y NK+ ++ +S K+ ++ E +V+EDRK + A IVRIMK+RK+++H
Sbjct: 672 VSLNKAYMNKKVRVDLSKFTMKQDAVRDTENVQKNVEEDRKSVISACIVRIMKTRKRVQH 731
Query: 86 NALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
L+ EV++Q S F P + MIK+CI SLI+K Y+ RT D Y Y+A
Sbjct: 732 QQLMTEVITQLSGRFKPKVEMIKRCIGSLIEKEYMLRTEGQKDLYEYLA 780
>sp|Q13618|CUL3_HUMAN Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2
Length = 768
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 37 RTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQS 96
R K++ A Q E+ E + T VD+DRK ++AAIVRIMKSRK+++HN L+ EV Q
Sbjct: 671 RVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQL 730
Query: 97 KS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
K+ F PS +IKK IE LI++ Y+ RT Y+YVA
Sbjct: 731 KARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768
>sp|A4IHP4|CUL3_XENTR Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1
Length = 768
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 37 RTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQS 96
R K++ A Q E+ E + T VD+DRK ++AAIVRIMKSRK+++HN L+ EV Q
Sbjct: 671 RVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQL 730
Query: 97 KS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
K+ F PS +IKK IE LI++ Y+ RT Y+YVA
Sbjct: 731 KARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768
>sp|Q6DE95|CUL3A_XENLA Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1
Length = 768
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 37 RTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQS 96
R K++ A Q E+ E + T VD+DRK ++AAIVRIMKSRK+++HN L+ EV Q
Sbjct: 671 RVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQL 730
Query: 97 KS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
K+ F PS +IKK IE LI++ Y+ RT Y+YVA
Sbjct: 731 KARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768
>sp|Q6GPF3|CUL3B_XENLA Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1
Length = 768
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 37 RTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQS 96
R K++ A Q E+ E + T VD+DRK ++AAIVRIMKSRK+++HN L+ EV Q
Sbjct: 671 RVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQL 730
Query: 97 KS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
K+ F PS +IKK IE LI++ Y+ RT Y+YVA
Sbjct: 731 KARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768
>sp|B5DF89|CUL3_RAT Cullin-3 OS=Rattus norvegicus GN=Cul3 PE=1 SV=2
Length = 768
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 37 RTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQS 96
R K++ A Q E+ E + T VD+DRK ++AAIVRIMKSRK+++HN L+ EV Q
Sbjct: 671 RVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQL 730
Query: 97 KS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
K+ F PS +IKK IE LI++ Y+ RT Y+YVA
Sbjct: 731 KARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768
>sp|Q9JLV5|CUL3_MOUSE Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1
Length = 768
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 37 RTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQS 96
R K++ A Q E+ E + T VD+DRK ++AAIVRIMKSRK+++HN L+ EV Q
Sbjct: 671 RVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQL 730
Query: 97 KS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
K+ F PS +IKK IE LI++ Y+ RT Y+YVA
Sbjct: 731 KARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768
>sp|Q54XF7|CUL5_DICDI Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 SV=1
Length = 750
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 8/125 (6%)
Query: 17 SVKELTEDTEIRLNLGYNNKRTKLKISGAVQ-KETPQ-EIERTVSS--VDEDRKLYLQAA 72
S K DTE +N +++K+ K+ + AVQ ET Q E ++TVS ++++R LQAA
Sbjct: 626 SFKNWNNDTEFTVNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAA 685
Query: 73 IVRIMKSRKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTAN---STDE 128
IVRIMKS+K + HN L E +Q SK F P I+ IKK IE LID+ Y+ RT + S +
Sbjct: 686 IVRIMKSKKTMTHNDLTVETTTQVSKWFTPKITAIKKAIEYLIDQEYIRRTTDDNPSARK 745
Query: 129 YSYVA 133
Y Y+A
Sbjct: 746 YEYMA 750
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1
Length = 759
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 19 KELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMK 78
KE+ + + N + +K ++KI+ KET +E T V +DR+ + AAIVRIMK
Sbjct: 646 KEVEDGDKFIFNADFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMK 705
Query: 79 SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
RK + HN L+ E+ +Q K F +KK IESLID++Y+ER +S ++Y YVA
Sbjct: 706 MRKTLGHNLLVSELYNQLK-FPVKPGDLKKRIESLIDRDYMERDKDSPNQYHYVA 759
>sp|Q17391|CUL3_CAEEL Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2
Length = 777
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 26 EIRLNLGYNNKRTKLKISGAVQK-ETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIR 84
E +N + +K T++K+ K E+ EI T V++DRKL ++AAIVRIMK+RK++
Sbjct: 668 EFAVNDNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDRKLEVEAAIVRIMKARKKLN 727
Query: 85 HNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
HN L+ EV Q + F PS +IK+ IE+LI++ Y+ R + Y Y+A
Sbjct: 728 HNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLARDEHDHRAYQYIA 777
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1
Length = 732
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 19 KELTEDTEIRLNLGYNNKRTKLKISGAV-QKETPQEIERTVSSVDEDRKLYLQAAIVRIM 77
KE+ E+ +N + +K K+KI V QKET E + T V+EDRK ++AAIVRIM
Sbjct: 616 KEIAEEDWFVVNDRFASKFYKVKIGTVVAQKETEPEKQETRQRVEEDRKPQIEAAIVRIM 675
Query: 78 KSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
KSR+ + HN +I EV Q ++ F + + IKK IESLI+++++ER Y Y+A
Sbjct: 676 KSRRVLDHNNIIAEVTKQLQTRFLANPTEIKKRIESLIERDFLERDNTDRKLYRYLA 732
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3
Length = 759
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 19 KELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMK 78
KE+ + + N + +K ++KI+ KET +E T V +DR+ + AAIVRIMK
Sbjct: 646 KEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMK 705
Query: 79 SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
RK + HN L+ E+ +Q K F +KK IESLID++Y+ER ++ ++Y YVA
Sbjct: 706 MRKTLGHNLLVSELYNQLK-FPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759
>sp|P0CH31|CLL1_ARATH Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140
PE=3 SV=1
Length = 721
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 10/130 (7%)
Query: 10 SCPGYIISVKE-----LTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDED 64
SC Y I +KE +++ N + +K K+++ E ++ V VD+D
Sbjct: 596 SCLKYKILIKEPMSRTISKTDTFEFNSKFTDKMRKIRVPLPPMDER----KKVVEDVDKD 651
Query: 65 RKLYLQAAIVRIMKSRKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTA 123
R+ + AA+VRIMKSRK + H L+ E + SK F P I MIKK IE LI+++Y+ER
Sbjct: 652 RRYAIDAALVRIMKSRKVLAHQQLVSECVEHLSKMFKPDIKMIKKRIEDLINRDYLERDT 711
Query: 124 NSTDEYSYVA 133
+ + + YVA
Sbjct: 712 ENANTFKYVA 721
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1
Length = 732
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 19 KELTEDTEIRLNLGYNNKRTKLKISGAV-QKETPQEIERTVSSVDEDRKLYLQAAIVRIM 77
K++ E+ +N + +K K+KI V QKET E + T V+EDRK ++AAIVRIM
Sbjct: 616 KDIGEEDLFVVNDKFTSKFYKVKIGTVVAQKETEPEKQETRQRVEEDRKPQIEAAIVRIM 675
Query: 78 KSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
KSRK + HN +I EV Q + F + + IKK IESLI+++++ER + Y Y+A
Sbjct: 676 KSRKILDHNNIIAEVTKQLQPRFLANPTEIKKRIESLIERDFLERDSTDRKLYRYLA 732
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4
Length = 913
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Query: 19 KELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMK 78
K++ + + N + +K ++KI+ KET +E T V +DR+ + AAIVRIMK
Sbjct: 800 KDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMK 859
Query: 79 SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
RK + HN L+ EV +Q K F + +KK IESLID++Y+ER + ++Y+Y+A
Sbjct: 860 MRKTLSHNLLVSEVYNQLK-FPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 913
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1
Length = 970
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Query: 30 NLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALI 89
N + +K ++KI+ KET +E T V +DR+ + AAIVRIMK RK + HN L+
Sbjct: 868 NDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLV 927
Query: 90 QEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
EV +Q K F + +KK IESLID++Y+ER + ++Y+Y+A
Sbjct: 928 SEVYNQLK-FPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 970
>sp|Q9SRZ0|CUL2_ARATH Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1
Length = 742
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 10 SCPGYIISVKE-----LTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDED 64
SC Y I +KE ++ N + +K ++++ E ++ V VD+D
Sbjct: 617 SCLKYKILIKEPMSRNISNTDTFEFNSKFTDKMRRIRVPLPPMDER----KKIVEDVDKD 672
Query: 65 RKLYLQAAIVRIMKSRKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTA 123
R+ + AA+VRIMKSRK + H L+ E + SK F P I MIKK IE LI ++Y+ER
Sbjct: 673 RRYAIDAALVRIMKSRKVLGHQQLVSECVEHLSKMFKPDIKMIKKRIEDLISRDYLERDT 732
Query: 124 NSTDEYSYVA 133
++ + + Y+A
Sbjct: 733 DNPNTFKYLA 742
>sp|Q09760|CUL3_SCHPO Cullin-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cul3 PE=1 SV=2
Length = 785
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 10 SCPGYIISVK-----ELTEDTEIRLNLGYNNKRTKLKISGAVQK--ETPQEIERTVSSVD 62
+C Y I +K E+ + N + + ++KIS Q E E +RT+ VD
Sbjct: 654 ACAKYKILLKDPKGREVNAGDKFYFNENFVSNLARIKISTVAQTRVEDDSERKRTLEKVD 713
Query: 63 EDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVER 121
E RK A IVR+MK RK HN L+ EV Q + F PS MIK+ IE+LI++ Y++R
Sbjct: 714 ESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQR 773
Query: 122 TANSTDEYSYVA 133
A++ Y Y+A
Sbjct: 774 QADNGRIYEYLA 785
>sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
Length = 738
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 10/130 (7%)
Query: 10 SCPGYIISVKE-----LTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDED 64
SC Y I +KE ++++ N + ++ ++KI E ++ V VD+D
Sbjct: 613 SCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLP----PVDERKKVVEDVDKD 668
Query: 65 RKLYLQAAIVRIMKSRKQIRHNALIQEVLSQ-SKSFAPSISMIKKCIESLIDKNYVERTA 123
R+ + AAIVRIMKSRK + H L+ E + Q S+ F P I IKK +E LI ++Y+ER
Sbjct: 669 RRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 728
Query: 124 NSTDEYSYVA 133
+ + + Y+A
Sbjct: 729 ENPNMFRYLA 738
>sp|Q8LGH4|CUL4_ARATH Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1
Length = 792
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 19 KELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMK 78
+++ + E N + ++K++ KET +E T V +DR+ + AAIVRIMK
Sbjct: 679 RDVEDGDEFEFNDEFAAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQIDAAIVRIMK 738
Query: 79 SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
+RK + H LI E+ Q K F + +KK IESLID+ Y+ER ++ Y+Y+A
Sbjct: 739 TRKVLSHTLLITELFQQLK-FPIKPADLKKRIESLIDREYLEREKSNPQIYNYLA 792
>sp|O14122|CUL4_SCHPO Cullin-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cul4 PE=1 SV=1
Length = 734
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 19 KELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMK 78
K+ + DT +N + +K ++KI+ KE QE V DR+ LQA+IVR+MK
Sbjct: 621 KKPSPDTMFYVNEKFTDKLYRVKINQIYLKEERQENSDVQEQVVRDRQFELQASIVRVMK 680
Query: 79 SRKQIRHNALIQEVLSQSKSFA-PSISMIKKCIESLIDKNYVERTANSTDEYSYV 132
+++++H+ L+Q V++ K P +S +K IE L++K Y+ER N D Y+YV
Sbjct: 681 QKEKMKHDDLVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLEREDN--DIYTYV 733
>sp|Q54CS2|CUL4_DICDI Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1
Length = 802
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 19 KELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMK 78
K + E N +++K K+K++ +ET +E ++T ++ DR+ + AAIVRIMK
Sbjct: 689 KVIDETDTFLFNSKFSSKLFKIKVNSIQIQETVEENQKTNENIISDRQYQVDAAIVRIMK 748
Query: 79 SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
+RK + HN LI E++S K F P +KK IE LI+K Y+ R + Y+Y+A
Sbjct: 749 TRKTLAHNLLISELVSLLK-FQPKPVDLKKRIEILIEKEYLCRDPENAMIYNYMA 802
>sp|Q17392|CUL4_CAEEL Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 SV=3
Length = 840
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 29 LNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNAL 88
+N + KR +++I+ K +E + V+ DR+ + AA+VRIMK+RKQ+ H L
Sbjct: 737 VNSKFTEKRCRVRIAQVNIKTAVEETKEVKEEVNSDRQYKIDAAVVRIMKARKQLNHQTL 796
Query: 89 IQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
+ E+L Q + F S + IKK +ESLI++ Y+ R Y+YVA
Sbjct: 797 MTELLQQLR-FPVSTADIKKRLESLIEREYISRDPEEASSYNYVA 840
>sp|Q12018|CDC53_YEAST Cell division control protein 53 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC53 PE=1 SV=1
Length = 815
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Query: 53 EIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQS-KSFAPSISMIKKCIE 111
E ER ++ +R+++L+A IVRIMK+++ + H L+ E ++QS + F +SM+K+ I+
Sbjct: 735 EDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAID 794
Query: 112 SLIDKNYVERTANSTDEYSYVA 133
SLI K Y++R + + Y+Y+A
Sbjct: 795 SLIQKGYLQR-GDDGESYAYLA 815
>sp|Q23639|CUL5_CAEEL Cullin-5 OS=Caenorhabditis elegans GN=cul-5 PE=1 SV=2
Length = 765
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 12 PGYIISVKELTEDTEIRLNLGYN-------NKRTKLKISGAVQKETPQEIERTVSSVDED 64
P ++ ++ T+ T+ +N +N +R K+ + G +Q E+ S+
Sbjct: 636 PSTTVTARDFTDSTKFLINHDFNVVKNGKSQQRGKVNLIGRLQLSLEANAEKEHESIVAL 695
Query: 65 RKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTA 123
R+L +Q IV+I+K+RK L E++ K F P+ +IK+ I+ LI+ Y+ER A
Sbjct: 696 RELRVQEGIVKILKTRKTYTLAQLTMELVEILKPLFIPNRKIIKEQIDWLIENKYMERRA 755
Query: 124 NSTDEYSYVA 133
+ + + Y++
Sbjct: 756 DDINTFVYIS 765
>sp|Q5RB36|CUL5_PONAB Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3
Length = 780
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 17 SVKELTEDTEIRLNLGYN-------NKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYL 69
S K+ TE T +N ++ KR K+ + G +Q T + E + + R L
Sbjct: 656 SPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRT 715
Query: 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDE 128
Q AI++IMK RK+I + L E++ K+ F P MIK+ IE LI+ Y+ R + +
Sbjct: 716 QEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINT 775
Query: 129 YSYVA 133
+ Y+A
Sbjct: 776 FIYMA 780
>sp|Q93034|CUL5_HUMAN Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4
Length = 780
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 17 SVKELTEDTEIRLNLGYN-------NKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYL 69
S K+ TE T +N ++ KR K+ + G +Q T + E + + R L
Sbjct: 656 SPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRT 715
Query: 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDE 128
Q AI++IMK RK+I + L E++ K+ F P MIK+ IE LI+ Y+ R + +
Sbjct: 716 QEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINT 775
Query: 129 YSYVA 133
+ Y+A
Sbjct: 776 FIYMA 780
>sp|Q9JJ31|CUL5_RAT Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3
Length = 780
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 17 SVKELTEDTEIRLNLGYN-------NKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYL 69
S K+ TE T +N ++ KR K+ + G +Q T + E + + R L
Sbjct: 656 SPKDFTEGTLFSVNQDFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRT 715
Query: 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDE 128
Q AI++IMK RK+I + L E++ K+ F P MIK+ IE LI+ Y+ R +
Sbjct: 716 QEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDEADINT 775
Query: 129 YSYVA 133
+ Y+A
Sbjct: 776 FIYMA 780
>sp|Q9D5V5|CUL5_MOUSE Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3
Length = 780
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 17 SVKELTEDTEIRLNLGYN-------NKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYL 69
S K+ TE T +N ++ KR K+ + G +Q T + E + + R L
Sbjct: 656 SPKDFTEGTLFSVNQDFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRT 715
Query: 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDE 128
Q AI++IMK RK+I + L E++ K+ F P MIK+ +E LI+ Y+ R +
Sbjct: 716 QEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQMEWLIEHRYIRRDEADINT 775
Query: 129 YSYVA 133
+ Y+A
Sbjct: 776 FIYMA 780
>sp|P53202|CUL3_YEAST Cullin-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CUL3 PE=1 SV=1
Length = 744
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 57 TVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS---FAPSISMIKKCIESL 113
+V + D + + L A IVRIMK+ ++ H L++ +++S PSI +K+ I+ L
Sbjct: 667 SVDTYDNEIVMELSAIIVRIMKTEGKLSHQQLLERTTKRTQSRLSLTPSI--LKRSIQLL 724
Query: 114 IDKNYVERTANSTDEYSYVA 133
I+K Y++R A+ Y Y++
Sbjct: 725 IEKEYIQRNADDPSYYHYLS 744
>sp|Q29425|CUL5_RABIT Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=3
Length = 780
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 17 SVKELTEDTEIRLNLGYN-------NKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYL 69
S K+ TE T +N ++ KR K+ + G +Q T + E + + R L
Sbjct: 656 SPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRT 715
Query: 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDE 128
+ ++IMK RK+I + L E++ K+ F P MIK+ IE LI+ Y+ R + +
Sbjct: 716 RKLYIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINT 775
Query: 129 YSYVA 133
+ Y+A
Sbjct: 776 FIYMA 780
>sp|A0KGG9|RLMD_AERHH 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=rlmD PE=3 SV=1
Length = 440
Score = 35.8 bits (81), Expect = 0.077, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 51 PQEIERTVSSVD---------EDRKLYLQAAI------VRIMKSRKQIRHNALIQEVLSQ 95
PQ IE TV S+D + + ++++ A+ RI++ +KQ H AL Q V
Sbjct: 14 PQRIEFTVDSLDHHCVGIGRHQGKAIFIEGALPGELVKARILEDKKQYAHAALQQVVTPA 73
Query: 96 SKSFAPSISMIKKC 109
+ AP S ++C
Sbjct: 74 ANRIAPFCSHYREC 87
>sp|Q8WWZ4|ABCAA_HUMAN ATP-binding cassette sub-family A member 10 OS=Homo sapiens
GN=ABCA10 PE=2 SV=3
Length = 1543
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 6 SMDGSCPGYIISVKELTEDTEIRLNLGY--------------NNKRTKLKISGAVQKETP 51
S +GS Y + E+T+ EIR N+G+ N R KI G KE
Sbjct: 446 STEGSATIYNTQLSEITDMEEIRKNIGFCPQFNFQFDFLTVRENLRVFAKIKGIQPKEVE 505
Query: 52 QEIERTVSSVD 62
QE++R + +D
Sbjct: 506 QEVKRIIMELD 516
>sp|A4SRC5|RLMD_AERS4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD OS=Aeromonas
salmonicida (strain A449) GN=rlmD PE=3 SV=1
Length = 439
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 47 QKET--PQEIERTVSSVD---------EDRKLYLQAAI------VRIMKSRKQIRHNALI 89
QK++ PQ IE TV S+D + + ++++ A+ RI+ +KQ H AL
Sbjct: 8 QKKSTQPQRIEFTVDSLDHHCVGIGRHQGKAIFIEGALPGEQVKARILDDKKQYAHAALQ 67
Query: 90 QEVLSQSKSFAPSISMIKKC 109
Q V + AP + ++C
Sbjct: 68 QVVTPAANRIAPFCNHYREC 87
>sp|Q2SZW0|MSBA_BURTA Lipid A export ATP-binding/permease protein MsbA OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=msbA PE=3 SV=1
Length = 596
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 18 VKELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEI-ERTVSSVDEDRKLYLQAAIVRI 76
+ L D +RL+ G +R +L I+ A+ K+ P I + S++D + + ++QAA+ +
Sbjct: 481 IDTLVGDNGMRLSGG---QRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETL 537
Query: 77 MKSRKQI 83
MK R +
Sbjct: 538 MKGRTTL 544
>sp|Q63VX7|MSBA_BURPS Lipid A export ATP-binding/permease protein MsbA OS=Burkholderia
pseudomallei (strain K96243) GN=msbA PE=3 SV=1
Length = 596
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 18 VKELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEI-ERTVSSVDEDRKLYLQAAIVRI 76
+ L D +RL+ G +R +L I+ A+ K+ P I + S++D + + ++QAA+ +
Sbjct: 481 IDTLVGDNGMRLSGG---QRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETL 537
Query: 77 MKSRKQI 83
MK R +
Sbjct: 538 MKGRTTL 544
>sp|Q3JUI6|MSBA_BURP1 Lipid A export ATP-binding/permease protein MsbA OS=Burkholderia
pseudomallei (strain 1710b) GN=msbA PE=3 SV=2
Length = 596
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 18 VKELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEI-ERTVSSVDEDRKLYLQAAIVRI 76
+ L D +RL+ G +R +L I+ A+ K+ P I + S++D + + ++QAA+ +
Sbjct: 481 IDTLVGDNGMRLSGG---QRQRLAIARAIYKDAPILILDEATSALDSESERHVQAALETL 537
Query: 77 MKSRKQI 83
MK R +
Sbjct: 538 MKGRTTL 544
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,697,066
Number of Sequences: 539616
Number of extensions: 1357139
Number of successful extensions: 3896
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 3789
Number of HSP's gapped (non-prelim): 117
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)