Query psy16237
Match_columns 133
No_of_seqs 112 out of 648
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 16:20:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dpl_C Cullin-5; ubiquitin, NE 100.0 9.7E-37 3.3E-41 252.1 9.5 127 7-133 237-382 (382)
2 2do7_A Cullin-4B, CUL-4B; heli 100.0 4.9E-36 1.7E-40 207.8 5.7 93 40-133 3-95 (101)
3 3o2p_E Cell division control p 100.0 7.9E-35 2.7E-39 197.3 7.8 81 52-133 7-88 (88)
4 1iuy_A Cullin-3 homologue; win 100.0 9.6E-36 3.3E-40 203.3 2.7 87 47-133 5-92 (92)
5 2hye_C Cullin-4A, CUL-4A; beta 100.0 4.6E-34 1.6E-38 252.6 12.2 126 7-133 629-759 (759)
6 3tdu_C Cullin-1, CUL-1; E2:E3, 100.0 8.9E-35 3.1E-39 192.7 5.3 75 59-133 2-77 (77)
7 1ldj_A Cullin homolog 1, CUL-1 100.0 9.6E-34 3.3E-38 250.6 10.2 114 20-133 646-760 (760)
8 1p6r_A Penicillinase repressor 93.7 0.084 2.9E-06 33.1 4.1 58 71-132 12-69 (82)
9 2k4b_A Transcriptional regulat 93.4 0.076 2.6E-06 35.5 3.7 60 70-133 37-96 (99)
10 1xn7_A Hypothetical protein YH 93.1 0.11 3.9E-06 33.3 3.9 44 72-122 6-49 (78)
11 1wi9_A Protein C20ORF116 homol 92.0 0.22 7.4E-06 31.8 4.1 55 72-133 11-65 (72)
12 2k02_A Ferrous iron transport 91.9 0.14 4.9E-06 33.6 3.3 44 73-123 7-50 (87)
13 2fu4_A Ferric uptake regulatio 91.3 0.44 1.5E-05 29.7 5.1 59 71-131 20-80 (83)
14 1tbx_A ORF F-93, hypothetical 91.1 0.3 1E-05 31.3 4.3 56 73-131 13-68 (99)
15 1sd4_A Penicillinase repressor 90.5 0.25 8.4E-06 32.9 3.6 59 70-132 12-70 (126)
16 1okr_A MECI, methicillin resis 87.9 0.55 1.9E-05 31.0 3.8 56 73-132 15-70 (123)
17 2v79_A DNA replication protein 87.0 0.58 2E-05 32.7 3.6 27 95-121 56-83 (135)
18 3f8b_A Transcriptional regulat 86.4 2.6 9E-05 28.2 6.6 59 63-122 7-66 (116)
19 2g9w_A Conserved hypothetical 86.3 0.75 2.6E-05 31.5 3.9 59 70-132 11-70 (138)
20 2jt1_A PEFI protein; solution 86.0 0.74 2.5E-05 29.3 3.4 54 65-125 5-60 (77)
21 3cuo_A Uncharacterized HTH-typ 84.6 1.4 4.7E-05 27.6 4.3 54 69-129 25-78 (99)
22 2htj_A P fimbrial regulatory p 83.5 2.1 7.1E-05 26.5 4.7 43 73-122 5-47 (81)
23 3r0a_A Putative transcriptiona 82.8 1.4 4.7E-05 29.7 3.9 58 68-132 26-89 (123)
24 2vn2_A DNAD, chromosome replic 82.7 0.67 2.3E-05 31.7 2.2 25 99-123 61-85 (128)
25 1qgp_A Protein (double strande 80.7 2.4 8.3E-05 26.5 4.2 49 71-126 17-68 (77)
26 1sfx_A Conserved hypothetical 79.7 1.6 5.4E-05 27.5 3.1 48 69-123 21-68 (109)
27 3i4p_A Transcriptional regulat 79.2 2.2 7.6E-05 29.9 4.1 47 69-122 4-50 (162)
28 1xma_A Predicted transcription 77.6 4 0.00014 28.5 5.0 56 66-122 39-95 (145)
29 1qbj_A Protein (double-strande 77.2 4.2 0.00014 25.8 4.6 50 70-126 12-64 (81)
30 1i1g_A Transcriptional regulat 76.8 2.5 8.7E-05 28.4 3.7 46 70-122 6-51 (141)
31 3eyy_A Putative iron uptake re 76.6 3 0.0001 29.0 4.1 51 72-124 23-73 (145)
32 3kp7_A Transcriptional regulat 76.2 1.5 5.2E-05 29.6 2.4 49 70-126 40-92 (151)
33 2eth_A Transcriptional regulat 75.0 6.3 0.00022 26.6 5.4 46 70-122 46-91 (154)
34 2oqg_A Possible transcriptiona 74.5 4 0.00014 26.2 4.1 49 70-126 23-71 (114)
35 2qww_A Transcriptional regulat 74.1 4.7 0.00016 27.0 4.5 44 71-121 44-87 (154)
36 2dbb_A Putative HTH-type trans 74.0 4.6 0.00016 27.6 4.5 46 70-122 11-56 (151)
37 2frh_A SARA, staphylococcal ac 74.0 2.5 8.6E-05 28.1 3.0 34 99-132 63-99 (127)
38 3bja_A Transcriptional regulat 72.9 4.9 0.00017 26.2 4.3 24 99-122 57-80 (139)
39 1ub9_A Hypothetical protein PH 72.8 4.7 0.00016 25.0 4.0 47 70-123 18-64 (100)
40 3oop_A LIN2960 protein; protei 72.7 4.2 0.00014 27.0 3.9 25 99-123 61-85 (143)
41 3tgn_A ADC operon repressor AD 71.9 3.9 0.00013 27.2 3.6 44 72-123 42-85 (146)
42 3k0l_A Repressor protein; heli 71.9 5.6 0.00019 27.1 4.5 47 70-123 48-94 (162)
43 3jth_A Transcription activator 71.6 7.1 0.00024 24.5 4.7 53 71-131 26-78 (98)
44 2p5v_A Transcriptional regulat 71.4 4.1 0.00014 28.3 3.7 45 71-122 13-57 (162)
45 2hzt_A Putative HTH-type trans 71.4 8 0.00027 25.0 5.0 44 73-123 19-62 (107)
46 2cfx_A HTH-type transcriptiona 70.8 4.5 0.00016 27.5 3.8 46 70-122 7-52 (144)
47 3bro_A Transcriptional regulat 70.6 8 0.00027 25.3 4.9 46 71-123 37-84 (141)
48 2pn6_A ST1022, 150AA long hypo 69.8 5 0.00017 27.3 3.8 47 69-122 4-50 (150)
49 2bv6_A MGRA, HTH-type transcri 69.8 4.7 0.00016 26.6 3.6 48 70-124 39-86 (142)
50 1lj9_A Transcriptional regulat 69.6 7.2 0.00025 25.7 4.5 44 73-123 34-77 (144)
51 2cg4_A Regulatory protein ASNC 69.5 4.9 0.00017 27.5 3.8 45 70-121 10-54 (152)
52 3mwm_A ZUR, putative metal upt 69.2 15 0.0005 25.2 6.2 51 72-124 18-69 (139)
53 2fsw_A PG_0823 protein; alpha- 69.0 8 0.00027 25.0 4.6 43 73-123 30-73 (107)
54 2p5k_A Arginine repressor; DNA 69.0 11 0.00036 21.7 4.7 52 74-131 11-62 (64)
55 3k2z_A LEXA repressor; winged 68.8 7.1 0.00024 28.1 4.7 55 65-126 6-61 (196)
56 3cjn_A Transcriptional regulat 68.6 6.9 0.00024 26.5 4.4 46 71-123 55-100 (162)
57 1jgs_A Multiple antibiotic res 68.5 8.6 0.00029 25.1 4.7 45 71-122 37-81 (138)
58 3g3z_A NMB1585, transcriptiona 68.5 6 0.00021 26.2 4.0 48 70-124 33-80 (145)
59 1mzb_A Ferric uptake regulatio 68.3 11 0.00039 25.5 5.4 52 71-124 21-74 (136)
60 3hsr_A HTH-type transcriptiona 68.1 4.1 0.00014 27.1 3.0 46 71-123 39-84 (140)
61 2gxg_A 146AA long hypothetical 67.9 15 0.0005 24.1 5.8 43 73-123 42-84 (146)
62 2fe3_A Peroxide operon regulat 67.8 9.6 0.00033 26.2 5.0 53 71-125 25-78 (145)
63 2e1c_A Putative HTH-type trans 67.7 5.4 0.00019 28.3 3.8 47 69-122 28-74 (171)
64 2nnn_A Probable transcriptiona 66.7 6.1 0.00021 25.8 3.6 24 99-122 62-85 (140)
65 2w25_A Probable transcriptiona 66.7 5.6 0.00019 27.1 3.6 46 70-122 9-54 (150)
66 2cyy_A Putative HTH-type trans 66.5 6.3 0.00022 27.0 3.8 46 70-122 9-54 (151)
67 4hbl_A Transcriptional regulat 65.8 5 0.00017 27.0 3.2 46 71-123 44-89 (149)
68 1ku9_A Hypothetical protein MJ 65.7 3.6 0.00012 27.1 2.3 36 80-122 39-74 (152)
69 3cdh_A Transcriptional regulat 65.6 9.7 0.00033 25.5 4.6 47 70-123 45-91 (155)
70 2xig_A Ferric uptake regulatio 65.5 11 0.00036 26.2 4.9 52 71-124 30-82 (150)
71 3s2w_A Transcriptional regulat 65.3 5.6 0.00019 27.0 3.3 44 73-123 55-98 (159)
72 2dk5_A DNA-directed RNA polyme 65.1 6.1 0.00021 25.6 3.3 33 82-121 36-68 (91)
73 2ia0_A Putative HTH-type trans 65.0 6.1 0.00021 28.0 3.6 46 70-122 19-64 (171)
74 3bpv_A Transcriptional regulat 64.9 5.5 0.00019 26.0 3.1 47 70-123 31-77 (138)
75 3bdd_A Regulatory protein MARR 64.6 8.2 0.00028 25.2 4.0 48 70-124 33-80 (142)
76 2nyx_A Probable transcriptiona 64.6 4.6 0.00016 27.9 2.8 24 99-122 69-92 (168)
77 2pg4_A Uncharacterized protein 64.5 1.5 5E-05 27.9 0.1 39 82-127 30-69 (95)
78 2rdp_A Putative transcriptiona 64.1 9.9 0.00034 25.2 4.4 24 99-122 66-89 (150)
79 2w57_A Ferric uptake regulatio 63.8 9.8 0.00033 26.4 4.4 52 71-124 20-73 (150)
80 2fbh_A Transcriptional regulat 63.6 8 0.00027 25.4 3.8 44 73-123 42-86 (146)
81 2pex_A Transcriptional regulat 63.4 6.9 0.00024 26.2 3.5 25 99-123 71-95 (153)
82 3bj6_A Transcriptional regulat 62.7 10 0.00035 25.2 4.2 25 99-123 64-88 (152)
83 2oxl_A Hypothetical protein YM 62.5 6.7 0.00023 24.1 2.9 50 67-116 8-59 (64)
84 2fa5_A Transcriptional regulat 61.9 6.6 0.00023 26.5 3.2 46 71-123 52-97 (162)
85 1yg2_A Gene activator APHA; vi 61.8 10 0.00035 26.9 4.3 55 68-123 2-57 (179)
86 3deu_A Transcriptional regulat 61.7 4.2 0.00014 28.2 2.1 25 99-123 78-102 (166)
87 1u2w_A CADC repressor, cadmium 60.9 12 0.0004 24.8 4.2 52 72-130 46-97 (122)
88 2f2e_A PA1607; transcription f 60.6 10 0.00035 26.1 4.0 50 73-131 29-80 (146)
89 2o03_A Probable zinc uptake re 60.3 24 0.00083 23.6 5.8 44 79-124 23-66 (131)
90 3ech_A MEXR, multidrug resista 60.0 6.2 0.00021 26.1 2.7 48 70-124 39-86 (142)
91 2b0l_A GTP-sensing transcripti 59.8 11 0.00038 24.6 3.9 47 70-123 30-77 (102)
92 3nrv_A Putative transcriptiona 59.6 9.2 0.00031 25.3 3.5 44 73-123 45-88 (148)
93 2hr3_A Probable transcriptiona 59.5 16 0.00056 23.9 4.8 25 99-123 60-84 (147)
94 2qvo_A Uncharacterized protein 59.4 4.4 0.00015 25.6 1.7 27 99-126 40-66 (95)
95 3e6m_A MARR family transcripti 59.3 5.7 0.00019 27.1 2.4 25 99-123 77-101 (161)
96 3eco_A MEPR; mutlidrug efflux 59.2 3.8 0.00013 27.0 1.5 46 71-123 34-81 (139)
97 4ets_A Ferric uptake regulatio 58.8 14 0.00047 26.1 4.5 53 71-123 36-89 (162)
98 1yyv_A Putative transcriptiona 58.5 17 0.00058 24.6 4.8 43 73-123 40-83 (131)
99 1z7u_A Hypothetical protein EF 58.3 8.4 0.00029 25.1 3.1 43 73-123 27-70 (112)
100 4esf_A PADR-like transcription 58.2 35 0.0012 22.6 6.3 57 63-122 6-63 (117)
101 1z91_A Organic hydroperoxide r 58.1 7.3 0.00025 25.8 2.8 26 99-124 64-89 (147)
102 4aik_A Transcriptional regulat 58.0 4 0.00014 28.1 1.5 24 99-122 56-79 (151)
103 4esb_A Transcriptional regulat 57.1 15 0.00052 24.3 4.3 54 66-122 7-61 (115)
104 2fbi_A Probable transcriptiona 57.1 8 0.00027 25.2 2.9 47 70-123 38-84 (142)
105 3boq_A Transcriptional regulat 55.6 7.9 0.00027 26.0 2.7 25 99-123 72-96 (160)
106 4a5n_A Uncharacterized HTH-typ 55.0 23 0.00078 24.3 5.0 53 72-131 30-84 (131)
107 3f8m_A GNTR-family protein tra 54.3 20 0.00067 26.8 4.9 45 77-130 30-75 (248)
108 4b8x_A SCO5413, possible MARR- 54.1 4.8 0.00016 27.4 1.3 28 96-123 57-85 (147)
109 3jw4_A Transcriptional regulat 54.0 4.2 0.00014 27.2 1.0 25 99-123 67-91 (148)
110 3hhh_A Transcriptional regulat 53.7 22 0.00075 23.6 4.7 57 63-122 8-65 (116)
111 2d1h_A ST1889, 109AA long hypo 53.7 6.7 0.00023 24.4 1.9 43 75-124 29-71 (109)
112 1r1u_A CZRA, repressor protein 53.6 13 0.00045 23.8 3.4 50 69-126 27-76 (106)
113 2fxa_A Protease production reg 53.4 13 0.00044 26.9 3.7 25 99-123 72-96 (207)
114 2esh_A Conserved hypothetical 53.3 21 0.00072 23.5 4.5 56 66-123 11-69 (118)
115 3pqk_A Biofilm growth-associat 52.7 18 0.00063 22.7 4.0 51 71-129 26-76 (102)
116 3iz6_V 40S ribosomal protein S 52.6 5.9 0.0002 27.0 1.5 34 99-132 70-103 (108)
117 3fm5_A Transcriptional regulat 52.4 4.9 0.00017 26.9 1.1 35 82-123 54-88 (150)
118 1s3j_A YUSO protein; structura 51.9 10 0.00036 25.2 2.8 25 99-123 61-85 (155)
119 3l7w_A Putative uncharacterize 51.9 16 0.00056 23.7 3.7 55 65-123 6-60 (108)
120 3nqo_A MARR-family transcripti 51.6 9.4 0.00032 27.0 2.6 25 99-123 67-91 (189)
121 2a61_A Transcriptional regulat 50.9 10 0.00035 24.9 2.6 47 70-123 35-81 (145)
122 2jsc_A Transcriptional regulat 50.8 19 0.00064 23.6 3.9 51 71-129 24-74 (118)
123 3b73_A PHIH1 repressor-like pr 50.2 19 0.00066 24.0 3.9 47 70-123 15-63 (111)
124 3f3x_A Transcriptional regulat 49.7 4.7 0.00016 26.8 0.7 25 99-123 60-84 (144)
125 3edp_A LIN2111 protein; APC883 48.8 9.7 0.00033 28.3 2.4 26 99-124 43-68 (236)
126 2kko_A Possible transcriptiona 47.9 7.1 0.00024 25.4 1.3 52 70-129 27-78 (108)
127 1on2_A Transcriptional regulat 47.6 15 0.00051 24.4 3.0 43 74-123 14-56 (142)
128 1oyi_A Double-stranded RNA-bin 47.5 48 0.0016 21.1 5.3 47 72-126 21-67 (82)
129 1y0u_A Arsenical resistance op 47.2 21 0.00071 22.3 3.5 44 71-123 34-77 (96)
130 3neu_A LIN1836 protein; struct 46.8 8.7 0.0003 25.8 1.7 26 99-124 47-72 (125)
131 2x4h_A Hypothetical protein SS 45.7 20 0.00067 23.6 3.4 44 73-123 22-65 (139)
132 1q1h_A TFE, transcription fact 45.7 15 0.0005 23.6 2.7 24 99-122 43-66 (110)
133 3c18_A Nucleotidyltransferase- 45.5 20 0.00067 28.4 3.7 57 61-122 215-272 (290)
134 1hsj_A Fusion protein consisti 45.1 17 0.00059 29.1 3.5 37 96-132 426-466 (487)
135 3tqn_A Transcriptional regulat 44.9 9.8 0.00034 25.0 1.7 26 99-124 43-68 (113)
136 1i7d_A DNA topoisomerase III; 44.7 27 0.00091 30.4 4.8 53 68-123 491-545 (659)
137 1r7j_A Conserved hypothetical 44.4 24 0.00081 22.6 3.5 26 99-124 30-55 (95)
138 3eet_A Putative GNTR-family tr 44.3 11 0.00038 28.7 2.2 26 99-124 63-88 (272)
139 3u2r_A Regulatory protein MARR 44.2 5.6 0.00019 27.3 0.4 25 99-123 72-96 (168)
140 3bwg_A Uncharacterized HTH-typ 42.1 14 0.00049 27.4 2.4 42 76-124 22-64 (239)
141 1b4a_A Arginine repressor; hel 42.1 57 0.0019 22.9 5.5 58 69-132 6-63 (149)
142 1uly_A Hypothetical protein PH 41.7 27 0.00093 25.2 3.8 46 69-122 21-66 (192)
143 1v4r_A Transcriptional repress 41.0 18 0.00062 22.9 2.5 49 69-124 20-70 (102)
144 2wv0_A YVOA, HTH-type transcri 40.6 15 0.00051 27.4 2.3 42 77-125 28-70 (243)
145 3u5c_Z RP45, S31, YS23, 40S ri 40.3 6.6 0.00023 26.7 0.2 34 99-132 69-102 (108)
146 1rbl_M Ribulose 1,5 bisphospha 40.3 19 0.00064 24.4 2.5 19 102-120 21-39 (109)
147 1p4x_A Staphylococcal accessor 39.4 15 0.00051 27.8 2.2 37 96-132 180-220 (250)
148 3by6_A Predicted transcription 39.3 13 0.00046 25.0 1.7 42 76-124 28-70 (126)
149 2h09_A Transcriptional regulat 39.1 30 0.001 23.2 3.6 46 72-124 44-89 (155)
150 2xzm_8 RPS25E,; ribosome, tran 38.8 3.3 0.00011 29.5 -1.5 34 99-132 73-106 (143)
151 1p4x_A Staphylococcal accessor 37.8 20 0.00068 27.1 2.6 34 99-132 60-96 (250)
152 2ek5_A Predicted transcription 37.6 19 0.00065 24.3 2.3 26 99-124 38-63 (129)
153 3ic7_A Putative transcriptiona 37.4 15 0.00053 24.6 1.8 30 95-124 40-70 (126)
154 1svd_M Ribulose bisphosphate c 37.2 22 0.00075 24.1 2.5 18 102-119 23-40 (110)
155 3zxw_B Ribulose bisphosphate c 37.1 22 0.00076 24.4 2.5 21 99-119 15-37 (118)
156 2heo_A Z-DNA binding protein 1 36.7 25 0.00087 20.9 2.5 44 72-122 14-58 (67)
157 2co5_A Viral protein F93; vira 36.4 60 0.0021 20.9 4.6 42 81-123 23-64 (99)
158 4ham_A LMO2241 protein; struct 35.5 17 0.00057 24.5 1.7 42 76-124 31-73 (134)
159 3df8_A Possible HXLR family tr 35.4 27 0.00094 22.7 2.7 39 83-129 43-82 (111)
160 3f6v_A Possible transcriptiona 35.3 31 0.0011 23.9 3.1 54 68-129 58-111 (151)
161 1j5y_A Transcriptional regulat 35.3 36 0.0012 24.1 3.6 43 73-122 26-70 (187)
162 3e1s_A Exodeoxyribonuclease V, 35.2 60 0.0021 27.4 5.5 60 61-123 66-131 (574)
163 3f6o_A Probable transcriptiona 34.9 27 0.00092 22.7 2.6 52 70-129 20-71 (118)
164 1stz_A Heat-inducible transcri 34.0 60 0.0021 25.6 5.0 57 64-125 17-74 (338)
165 1wj5_A Hypothetical protein (r 33.7 31 0.0011 23.7 2.8 22 103-124 77-98 (120)
166 3rhi_A DNA-binding protein HU; 33.3 44 0.0015 21.1 3.4 32 81-115 2-33 (93)
167 2wte_A CSA3; antiviral protein 29.1 47 0.0016 24.9 3.5 47 71-124 155-201 (244)
168 1d8j_A General transcription f 28.8 23 0.0008 22.7 1.4 59 68-133 11-76 (81)
169 1oef_A Apolipoprotein E; glyco 28.5 35 0.0012 16.8 1.8 18 99-116 3-20 (26)
170 1wdd_S Ribulose bisphosphate c 28.4 37 0.0013 23.6 2.5 18 102-119 22-39 (128)
171 1gk8_I Ribulose bisphosphate c 28.4 36 0.0012 24.0 2.5 18 102-119 22-39 (140)
172 2kep_A General secretion pathw 28.2 37 0.0013 22.7 2.4 24 109-132 39-77 (110)
173 1bxn_I Rubisco, protein (ribul 28.0 38 0.0013 23.9 2.5 20 100-119 13-32 (139)
174 1txp_A HnRNP C, heterogeneous 27.7 39 0.0013 17.4 1.9 13 104-116 9-21 (28)
175 3elk_A Putative transcriptiona 27.6 99 0.0034 20.3 4.6 57 65-123 11-67 (117)
176 2klq_A CBD, P105MCM, DNA repli 27.4 1E+02 0.0035 20.5 4.6 51 67-117 14-77 (114)
177 1fx7_A Iron-dependent represso 27.3 27 0.00091 25.6 1.7 26 99-124 34-59 (230)
178 3hrs_A Metalloregulator SCAR; 27.3 56 0.0019 23.6 3.5 44 74-124 12-55 (214)
179 1bwv_S Rubisco, protein (ribul 27.2 39 0.0013 23.8 2.5 19 101-119 14-32 (138)
180 1z6r_A MLC protein; transcript 27.1 70 0.0024 25.1 4.3 46 71-123 19-64 (406)
181 1bm9_A RTP, TER, replication t 27.0 1.2E+02 0.004 20.7 4.9 56 67-123 17-74 (122)
182 3ri2_A Transcriptional regulat 26.8 1.4E+02 0.0049 19.8 6.8 57 62-122 15-71 (123)
183 1t92_A General secretion pathw 26.8 19 0.00064 24.5 0.7 24 109-132 39-77 (116)
184 2fbk_A Transcriptional regulat 25.8 14 0.00049 25.6 -0.0 25 99-123 96-120 (181)
185 2krc_A DNA-directed RNA polyme 25.3 54 0.0019 21.6 2.8 29 68-97 15-44 (99)
186 2ra5_A Putative transcriptiona 24.6 15 0.00052 27.4 -0.1 30 95-124 45-75 (247)
187 1xmk_A Double-stranded RNA-spe 24.3 1.1E+02 0.0039 19.0 4.1 53 68-127 11-64 (79)
188 2lkp_A Transcriptional regulat 24.3 71 0.0024 20.3 3.3 38 81-125 44-81 (119)
189 2wa0_A Melanoma-associated ant 24.1 30 0.001 26.3 1.5 53 79-132 136-196 (240)
190 1z05_A Transcriptional regulat 24.0 58 0.002 25.9 3.3 46 71-123 42-87 (429)
191 4f6o_A Metacaspase-1; rossmann 23.7 41 0.0014 27.0 2.3 35 66-100 296-331 (350)
192 3nw0_B Melanoma-associated ant 23.5 32 0.0011 25.8 1.5 55 76-132 110-172 (217)
193 1mul_A NS2, HU-2, DNA binding 23.5 1.1E+02 0.0037 19.0 4.0 30 83-115 1-30 (90)
194 1r1t_A Transcriptional repress 23.5 77 0.0026 20.8 3.4 50 72-129 50-99 (122)
195 2o0y_A Transcriptional regulat 23.4 1E+02 0.0035 22.8 4.4 44 74-124 29-73 (260)
196 4f0h_B Ribulose bisphosphate c 23.3 52 0.0018 23.2 2.5 20 101-120 14-33 (138)
197 1bia_A BIRA bifunctional prote 23.2 91 0.0031 24.0 4.2 43 72-121 9-51 (321)
198 1owf_A IHF-alpha, integration 22.9 1.1E+02 0.0037 19.4 3.9 31 82-115 2-32 (99)
199 2dql_A PEX protein; circadian 22.8 1.4E+02 0.0047 19.4 4.6 48 73-122 27-75 (115)
200 2np2_A HBB; protein-DNA comple 22.8 78 0.0027 20.6 3.2 35 81-115 7-43 (108)
201 1f1e_A Histone fold protein; a 22.4 38 0.0013 24.2 1.7 24 100-123 57-80 (154)
202 1b8z_A Protein (histonelike pr 22.4 1.1E+02 0.0038 18.9 3.8 30 83-115 1-30 (90)
203 3cuq_B Vacuolar protein-sortin 22.3 1E+02 0.0036 22.8 4.2 33 99-131 178-210 (218)
204 2e1n_A PEX, period extender; c 21.9 97 0.0033 21.1 3.7 50 71-122 37-87 (138)
205 1p71_A DNA-binding protein HU; 21.7 1.1E+02 0.0039 19.1 3.8 30 83-115 1-30 (94)
206 1u5t_B Defective in vacuolar p 21.7 1.4E+02 0.0047 21.2 4.6 30 96-125 126-156 (169)
207 2xrn_A HTH-type transcriptiona 21.6 47 0.0016 24.4 2.2 37 82-125 21-57 (241)
208 2o97_B NS1, HU-1, DNA-binding 21.5 1.1E+02 0.0038 19.0 3.7 30 83-115 1-30 (90)
209 2qq9_A Diphtheria toxin repres 21.5 40 0.0014 24.6 1.7 26 99-124 34-59 (226)
210 3r4k_A Transcriptional regulat 20.9 1.2E+02 0.0041 22.4 4.4 43 80-130 19-61 (260)
211 2rqp_A Heterochromatin protein 20.8 88 0.003 19.7 3.1 53 69-122 16-70 (88)
212 2cpg_A REPA protein, transcrip 20.7 46 0.0016 17.6 1.5 39 77-115 1-41 (45)
213 1hw1_A FADR, fatty acid metabo 20.5 33 0.0011 24.8 1.0 41 77-124 25-66 (239)
214 1bja_A Transcription regulator 20.4 49 0.0017 21.6 1.8 25 100-124 42-66 (95)
No 1
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=9.7e-37 Score=252.09 Aligned_cols=127 Identities=29% Similarity=0.356 Sum_probs=109.3
Q ss_pred CCCCCc---ceeecc--------ccCCCCCeEEEccCCCCC-----ceeEEecCC--CcCCChHHHhhhhhhHHHHhHHH
Q psy16237 7 MDGSCP---GYIISV--------KELTEDTEIRLNLGYNNK-----RTKLKISGA--VQKETPQEIERTVSSVDEDRKLY 68 (133)
Q Consensus 7 ~s~~~~---~~~il~--------~~~~~~d~f~~N~~F~~k-----~~kiki~~~--~~~~~~~e~~~~~~~v~~~R~~~ 68 (133)
+||++. |+++|. +++.++|+|+||.+|++. .+|++|+.+ .+.++..+.+++++.|+++|.+.
T Consensus 237 ~sL~~~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~ 316 (382)
T 3dpl_C 237 WSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILR 316 (382)
T ss_dssp HHHHCCTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhhe
Confidence 355553 466774 346789999999999972 256677654 24455667778899999999999
Q ss_pred HHhhhhhhhcccccccchHHHHHHHHhcCC-CCCCHHHHHHHHHHhhhhhccccCCCCCCceEecC
Q psy16237 69 LQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133 (133)
Q Consensus 69 I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yva 133 (133)
||||||||||+||+|+|++|+.+|+++|++ |+|++.+||++||.|||||||+|+++|+++|+|+|
T Consensus 317 i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 317 TQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHHHHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred eeEEEehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 999999999999999999999999999999 99999999999999999999999999999999998
No 2
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=4.9e-36 Score=207.81 Aligned_cols=93 Identities=45% Similarity=0.620 Sum_probs=87.2
Q ss_pred EEecCCCcCCChHHHhhhhhhHHHHhHHHHHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhcc
Q psy16237 40 LKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYV 119 (133)
Q Consensus 40 iki~~~~~~~~~~e~~~~~~~v~~~R~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl 119 (133)
++|+.+..+++..|..++++.|++||.+.||||||||||++|+|+|++|+++|+++|+ |+|++.+||++||.|||+|||
T Consensus 3 ~ki~~i~~ke~~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~-F~p~~~~IKk~IE~LIereYl 81 (101)
T 2do7_A 3 SGSSGIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK-FPVKPADLKKRIESLIDRDYM 81 (101)
T ss_dssp CSSCSCCCCCCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS-SCCCHHHHHHHHHHHHHTTSE
T ss_pred eeecccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhhhHH
Confidence 5666666667777888899999999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccCCCCCCceEecC
Q psy16237 120 ERTANSTDEYSYVA 133 (133)
Q Consensus 120 ~R~~~d~~~y~Yva 133 (133)
+|+++|+++|+|+|
T Consensus 82 eR~~~d~~~y~YlA 95 (101)
T 2do7_A 82 ERDKENPNQYNYIA 95 (101)
T ss_dssp EECSSCTTEEEECC
T ss_pred hcCCCCCCeEEEec
Confidence 99999999999997
No 3
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=100.00 E-value=7.9e-35 Score=197.27 Aligned_cols=81 Identities=38% Similarity=0.760 Sum_probs=78.4
Q ss_pred HHHhhhhhhHHHHhHHHHHhhhhhhhcccccccchHHHHHHHHhcCC-CCCCHHHHHHHHHHhhhhhccccCCCCCCceE
Q psy16237 52 QEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYS 130 (133)
Q Consensus 52 ~e~~~~~~~v~~~R~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~ 130 (133)
.|..++++.|+++|.+.||||||||||++|+|+|++|+++|+++|++ |+|++++||++||+|||+|||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 46778999999999999999999999999999999999999999999 999999999999999999999999998 9999
Q ss_pred ecC
Q psy16237 131 YVA 133 (133)
Q Consensus 131 Yva 133 (133)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 997
No 4
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=100.00 E-value=9.6e-36 Score=203.33 Aligned_cols=87 Identities=51% Similarity=0.721 Sum_probs=82.0
Q ss_pred cCCChHHHhhhhhhHHHHhHHHHHhhhhhhhcccccccchHHHHHHHHhcCC-CCCCHHHHHHHHHHhhhhhccccCCCC
Q psy16237 47 QKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANS 125 (133)
Q Consensus 47 ~~~~~~e~~~~~~~v~~~R~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIekeYl~R~~~d 125 (133)
++++..|..++++.|++||.+.||||||||||++|+|+|++|+++|+++|++ |+|++.+||++||+|||+|||+|+++|
T Consensus 5 ~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d 84 (92)
T 1iuy_A 5 QGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 84 (92)
T ss_dssp CCCCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSC
T ss_pred ccccHHHHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCC
Confidence 4566667778899999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCceEecC
Q psy16237 126 TDEYSYVA 133 (133)
Q Consensus 126 ~~~y~Yva 133 (133)
+++|+|+|
T Consensus 85 ~~~y~Y~A 92 (92)
T 1iuy_A 85 RKVYTYVA 92 (92)
T ss_dssp SSEEEEC-
T ss_pred CCeeEecC
Confidence 99999997
No 5
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=4.6e-34 Score=252.58 Aligned_cols=126 Identities=37% Similarity=0.528 Sum_probs=117.7
Q ss_pred CCCCCcceeeccc-----cCCCCCeEEEccCCCCCceeEEecCCCcCCChHHHhhhhhhHHHHhHHHHHhhhhhhhcccc
Q psy16237 7 MDGSCPGYIISVK-----ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRK 81 (133)
Q Consensus 7 ~s~~~~~~~il~~-----~~~~~d~f~~N~~F~~k~~kiki~~~~~~~~~~e~~~~~~~v~~~R~~~I~AaIVRIMK~~k 81 (133)
+|++++|+++|.+ ++.++|.|+||.+|++++.||+|+.+..+++..|...+++.|+++|.+.||||||||||++|
T Consensus 629 ~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK 708 (759)
T 2hye_C 629 QSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRK 708 (759)
T ss_dssp HTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHccCCceeecCCCCCCCCCCCEEEeeccccCCceEEEeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5788888888863 46799999999999999999999976667777888889999999999999999999999999
Q ss_pred cccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceEecC
Q psy16237 82 QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133 (133)
Q Consensus 82 ~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yva 133 (133)
+|+|++|+++|+++++ |+|++.+||++||.|||||||+|+++|+++|+|+|
T Consensus 709 ~l~h~~Lv~ev~~ql~-F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 709 TLGHNLLVSELYNQLK-FPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp EEETHHHHHHHHHHSS-SCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred CCCHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcccceecCCCCCCeeEecC
Confidence 9999999999999999 99999999999999999999999999999999998
No 6
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=100.00 E-value=8.9e-35 Score=192.67 Aligned_cols=75 Identities=56% Similarity=0.919 Sum_probs=72.8
Q ss_pred hhHHHHhHHHHHhhhhhhhcccccccchHHHHHHHHhcCC-CCCCHHHHHHHHHHhhhhhccccCCCCCCceEecC
Q psy16237 59 SSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133 (133)
Q Consensus 59 ~~v~~~R~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yva 133 (133)
+.|++||.+.||||||||||++|+|+|++|+++|+++|++ |+|++++||++||+|||+|||+|+++|+++|+|+|
T Consensus 2 k~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 2 SNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred cchhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 4689999999999999999999999999999999999999 99999999999999999999999999999999998
No 7
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=9.6e-34 Score=250.61 Aligned_cols=114 Identities=51% Similarity=0.804 Sum_probs=108.2
Q ss_pred cCCCCCeEEEccCCCCCceeEEecCCCcCCChHHHhhhhhhHHHHhHHHHHhhhhhhhcccccccchHHHHHHHHhcCC-
Q psy16237 20 ELTEDTEIRLNLGYNNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS- 98 (133)
Q Consensus 20 ~~~~~d~f~~N~~F~~k~~kiki~~~~~~~~~~e~~~~~~~v~~~R~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~- 98 (133)
++.++|.|+||.+|++|+.||+|+.+.++++..|...+++.|+++|.+.||||||||||++|+|+|++|+++|+++|++
T Consensus 646 ~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~r 725 (760)
T 1ldj_A 646 ELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSR 725 (760)
T ss_dssp CCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTT
T ss_pred CCCCCCEEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhcc
Confidence 4678999999999999999999997767777777788999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCCCCCceEecC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yva 133 (133)
|+|++.+||++||.|||||||+|+++|+++|+|+|
T Consensus 726 F~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 726 FKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred CCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 99999999999999999999999999999999998
No 8
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=93.70 E-value=0.084 Score=33.11 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=42.9
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceEec
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 132 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yv 132 (133)
..|.+++-....++-.||...+-.. ...+.+.+...++.|.++|||.|..++ ..|.|.
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~---~~~s~~Tv~~~l~rL~~kGlv~r~~~g-r~~~y~ 69 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKT---STWSPKTIQTMLLRLIKKGALNHHKEG-RVFVYT 69 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhc---CCccHHHHHHHHHHHHHCCCeEEEecC-CEEEEE
Confidence 3445555456678888888876542 236788899999999999999998654 567775
No 9
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=93.38 E-value=0.076 Score=35.45 Aligned_cols=60 Identities=13% Similarity=0.308 Sum_probs=41.9
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceEecC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yva 133 (133)
|..|.+++-....++-.||...+... ..++.+.+...|+.|.++|||+|..+ ...|.|-|
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~l~~~---~~~s~sTVt~~L~rLe~KGlV~R~~~-gR~~~Y~p 96 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQE---LEWSLATVKTLLGRLVKKEMLSTEKE-GRKFVYRP 96 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCGG---GCCCHHHHHHHHHHHHHTTSCEEEEE-TTEEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHhcc---cCCCHhhHHHHHHHHHHCCCEEEEeC-CCEEEEEE
Confidence 34445555545566666666543221 34678999999999999999999765 46899865
No 10
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=93.05 E-value=0.11 Score=33.29 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=37.0
Q ss_pred hhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 72 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 72 aIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
.|...++.+..++-.||..+ |.++...|++-++.|.++|+|+|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~-------l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQT-------LNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHH-------TTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 35666777788887776644 889999999999999999999997
No 11
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=91.98 E-value=0.22 Score=31.83 Aligned_cols=55 Identities=11% Similarity=0.220 Sum_probs=46.7
Q ss_pred hhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceEecC
Q psy16237 72 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYVA 133 (133)
Q Consensus 72 aIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yva 133 (133)
..|...|.+|.+.-.+|-.+ |..+.+++-.+|+.|.+.+-|.---+|+..|+|+.
T Consensus 11 ~Fi~yIk~~Kvv~LedLA~~-------F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAFQ-------MGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHCSEECHHHHHHH-------HCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHcCeeeHHHHHHH-------hCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 34777888888887776544 88999999999999999999998878888999984
No 12
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=91.85 E-value=0.14 Score=33.63 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=36.2
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
|...++.+..++-.||... |..+...|++-++.|.++|+|.|..
T Consensus 7 Il~~L~~~g~vsv~eLA~~-------l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSAR-------LQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHH-------TTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 5566677777777766544 8899999999999999999999973
No 13
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=91.26 E-value=0.44 Score=29.67 Aligned_cols=59 Identities=8% Similarity=0.224 Sum_probs=43.0
Q ss_pred hhhhhhhccc--ccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceEe
Q psy16237 71 AAIVRIMKSR--KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSY 131 (133)
Q Consensus 71 AaIVRIMK~~--k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Y 131 (133)
.+|..++... ..++-.||...+.+.. ...+.+.|-+.++.|.+.|+|.|...+.....|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~--~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMG--EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhC--CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 3455666554 5799999988875542 356889999999999999999997653334444
No 14
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=91.09 E-value=0.3 Score=31.34 Aligned_cols=56 Identities=16% Similarity=0.279 Sum_probs=38.4
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceEe
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSY 131 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Y 131 (133)
|...+.....++-.+|...+.+. +..+.+.+-+.|..|.++||+.|..+.+..+.+
T Consensus 13 iL~~l~~~~~~~~~el~~~la~~---l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~ 68 (99)
T 1tbx_A 13 VLAYLYDNEGIATYDLYKKVNAE---FPMSTATFYDAKKFLIQEGFVKERQERGEKRLY 68 (99)
T ss_dssp HHHHHTTCTTCBHHHHHHHHHTT---SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHHHH---cCCCHHHHHHHHHHHHHCCCEEEEecCCceEEE
Confidence 33444445567766665544333 558899999999999999999997654444443
No 15
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=90.54 E-value=0.25 Score=32.91 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=41.6
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceEec
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 132 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yv 132 (133)
|..|.+++-....++-.||...+-.. ..++.+.+...|+.|.++|||.|..++ ..+.|.
T Consensus 12 q~~vL~~L~~~~~~t~~el~~~l~~~---~~~~~~Tvt~~l~rLe~kGlv~R~~~~-r~~~~~ 70 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVSANEIVVEIQKY---KEVSDKTIRTLITRLYKKEIIKRYKSE-NIYFYS 70 (126)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHTT---SCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhhc---CCCChhhHHHHHHHHHHCCceEEEeCC-CeEEEE
Confidence 34445555555667777777665321 346789999999999999999998764 467774
No 16
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=87.90 E-value=0.55 Score=30.97 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=40.6
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceEec
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 132 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yv 132 (133)
|..++.....++-.+|...+-.. ...+.+.+-+.++.|.++|||+|..+| ..+.|+
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~---~~~s~~tv~~~l~~L~~~Glv~r~~~~-rr~~~~ 70 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQ---KDWSPKTIRTLITRLYKKGFIDRKKDN-KIFQYY 70 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHTSEEEEEET-TEEEEE
T ss_pred HHHHHHhCCCcCHHHHHHHHhcc---CCCcHhhHHHHHHHHHHCCCeEEEecC-CeEEEE
Confidence 34444445678888888776433 346788899999999999999998765 455554
No 17
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=87.00 E-value=0.58 Score=32.72 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.4
Q ss_pred hcCC-CCCCHHHHHHHHHHhhhhhcccc
Q psy16237 95 QSKS-FAPSISMIKKCIESLIDKNYVER 121 (133)
Q Consensus 95 ~l~~-F~p~~~~iK~~IE~LIekeYl~R 121 (133)
.|+. +..++..|-+.|..|+++|||.|
T Consensus 56 ~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 56 QLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3445 67888999999999999999999
No 18
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=86.40 E-value=2.6 Score=28.17 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=50.4
Q ss_pred HHhHHHHHhhhhhhhcccccccchHHHHHHHHhcCC-CCCCHHHHHHHHHHhhhhhccccC
Q psy16237 63 EDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 63 ~~R~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+-++..++.+|..++.. +.+.-.+|...+.+.... |.++...+-..+..|-+.|||++.
T Consensus 7 ~~~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 34566788888888874 677778999998887776 899999999999999999999985
No 19
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=86.32 E-value=0.75 Score=31.46 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=40.2
Q ss_pred Hhhhhhhhcc-cccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceEec
Q psy16237 70 QAAIVRIMKS-RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 132 (133)
Q Consensus 70 ~AaIVRIMK~-~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yv 132 (133)
|..|.+++-. ...++-.||...+-.. -..+.+.+...|+.|.++|||.|..++ ..+.|.
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~~---~~~~~~Tvt~~l~rLe~kGlv~r~~~~-r~~~~~ 70 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSAR---RDLAYTTVMAVLQRLAKKNLVLQIRDD-RAHRYA 70 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTTT---CCCCHHHHHHHHHHHHHTTSEEEEC----CCEEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhcc---CCCCHHHHHHHHHHHHHCCCEEEEecC-CeEEEE
Confidence 4445555554 4667777777665322 346888999999999999999998754 466663
No 20
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=85.95 E-value=0.74 Score=29.31 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=36.2
Q ss_pred hHHHHHhhhhhhhccc--ccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCC
Q psy16237 65 RKLYLQAAIVRIMKSR--KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANS 125 (133)
Q Consensus 65 R~~~I~AaIVRIMK~~--k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d 125 (133)
|...|=..|-+-++.+ ...+..||... |-.+...+..-+..|-++|||+|+.+.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~-------lgvS~~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADA-------AGLSIYQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHH-------HCCCHHHHHHHHHHHHHCCcEEecCCC
Confidence 3334444444444443 56666666644 345788899999999999999998653
No 21
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=84.56 E-value=1.4 Score=27.65 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=39.0
Q ss_pred HHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCce
Q psy16237 69 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 129 (133)
Q Consensus 69 I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y 129 (133)
.+..|...+.....++..||... +..+.+.+-+.+..|.+.|||.|..+.+..|
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~-------l~is~~tvs~~l~~L~~~glv~~~~~~r~~~ 78 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRI-------TGLSASATSQHLARMRDEGLIDSQRDAQRIL 78 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHH-------HCCCHHHHHHHHHHHHHTTSEEEEECSSCEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 44556666666657777776654 3468888999999999999999976554333
No 22
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=83.55 E-value=2.1 Score=26.50 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=32.0
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
|...+.....++-.||... |..+.+.+.+.+..|.+.|+|.|.
T Consensus 5 Il~~L~~~~~~s~~eLa~~-------lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEA-------LAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHH-------HTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4555555556666666544 457888999999999999999964
No 23
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=82.84 E-value=1.4 Score=29.74 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=41.1
Q ss_pred HHHhhhhhhhccccc--ccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC--CCC--CceEec
Q psy16237 68 YLQAAIVRIMKSRKQ--IRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA--NST--DEYSYV 132 (133)
Q Consensus 68 ~I~AaIVRIMK~~k~--l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~--~d~--~~y~Yv 132 (133)
..+..|..++..... ++-.||...+ ..+.+.+-+.++.|.++|||.|.. .|. ..|.|.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l-------~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~ 89 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSL-------KLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYK 89 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHH-------TSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEe
Confidence 345666777766555 8888876553 368899999999999999999953 222 245664
No 24
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=82.66 E-value=0.67 Score=31.73 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
...+...+.+.|..|+++|||.|..
T Consensus 61 l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 61 MTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 5678899999999999999999953
No 25
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=80.68 E-value=2.4 Score=26.54 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=38.2
Q ss_pred hhhhhhhcccc---cccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCC
Q psy16237 71 AAIVRIMKSRK---QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANST 126 (133)
Q Consensus 71 AaIVRIMK~~k---~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~ 126 (133)
-.|..+|+... .++..||-.. | -.+...|.+.|..|.+.|+|.|..+.+
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~----L---gvs~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGK----L---GTPKKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHH----H---CCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHH----H---CcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 34667788887 8888777654 3 377789999999999999999975544
No 26
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=79.71 E-value=1.6 Score=27.48 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=36.1
Q ss_pred HHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 69 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 69 I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
.+..|...+.....++..+|...+ ..+.+.+-+.+..|.++|||.|..
T Consensus 21 ~~~~il~~l~~~~~~s~~ela~~l-------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLERGGMRVSEIAREL-------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 345556666666677777766543 478899999999999999999964
No 27
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=79.17 E-value=2.2 Score=29.94 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=40.4
Q ss_pred HHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 69 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 69 I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
++-.|.+.+.....+++.+|-..+ -.+.+.+.++|..|.+.|+|+|.
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l-------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV-------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH-------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCeeec
Confidence 566788999999999998887653 48899999999999999999984
No 28
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=77.60 E-value=4 Score=28.54 Aligned_cols=56 Identities=7% Similarity=0.201 Sum_probs=47.3
Q ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHhcCC-CCCCHHHHHHHHHHhhhhhccccC
Q psy16237 66 KLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 66 ~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
...++.+|..++.. +.+...+|..++.+.... +.++...+-..+..|.+.|||+|.
T Consensus 39 ~g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~ 95 (145)
T 1xma_A 39 RGYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSY 95 (145)
T ss_dssp GGTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEE
Confidence 34567788888854 678888999998877776 889999999999999999999986
No 29
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=77.17 E-value=4.2 Score=25.84 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=38.6
Q ss_pred Hhhhhhhhcccc---cccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCC
Q psy16237 70 QAAIVRIMKSRK---QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANST 126 (133)
Q Consensus 70 ~AaIVRIMK~~k---~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~ 126 (133)
+-.|..+++... .++..+|-.+ +-.+...|.+.|..|-+.|+|.|....+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~-------Lgvsr~tV~~~L~~Le~~G~I~~~g~~~ 64 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGK-------LGTPKKEINRVLYSLAKKGKLQKEAGTP 64 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEESSSS
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 344667788877 7888877654 3377889999999999999999865443
No 30
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=76.76 E-value=2.5 Score=28.42 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=36.6
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+-.|.+.+.....+++.+|-..+ ..+.+.+.+++..|.+.|+|+|.
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~l-------g~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKL-------GISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH-------TSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCEecc
Confidence 44566777767778888877653 36889999999999999999885
No 31
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=76.59 E-value=3 Score=28.97 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=38.1
Q ss_pred hhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 72 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 72 aIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
+|.+++.....++-.||+..+.+.. ..++.+.|=+.++.|.+.|.|.|-..
T Consensus 23 ~Il~~l~~~~h~ta~ei~~~l~~~~--~~is~~TVYR~L~~L~e~Glv~~i~~ 73 (145)
T 3eyy_A 23 LVLEAVDTLEHATPDDILGEVRKTA--SGINISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp HHHHHHHHHSSBCHHHHHHHHHTTC--TTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhhC--CCCCHhHHHHHHHHHHHCCcEEEEEe
Confidence 3444444444888888888775432 35689999999999999999999654
No 32
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=76.20 E-value=1.5 Score=29.64 Aligned_cols=49 Identities=8% Similarity=0.266 Sum_probs=32.4
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhcccc----CCCCC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVER----TANST 126 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R----~~~d~ 126 (133)
+..|...+ ....++-.+|...+ ..+.+.+-+.|..|.++|||+| ++.|+
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l-------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~ 92 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQ-------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQ 92 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHH-------CSCSSHHHHHHHHHHHTTSEEC---------
T ss_pred HHHHHHHH-HcCCcCHHHHHHHH-------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCC
Confidence 44455556 66777777766542 3566777899999999999998 55554
No 33
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=75.01 E-value=6.3 Score=26.56 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=31.4
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+..|...+.....++-.+|... +..+.+.+-+.|..|.++|||.|.
T Consensus 46 ~~~iL~~l~~~~~~t~~ela~~-------l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 46 ELYAFLYVALFGPKKMKEIAEF-------LSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHH-------TTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEee
Confidence 3344444444445555554432 457888999999999999999995
No 34
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=74.46 E-value=4 Score=26.21 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=35.2
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANST 126 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~ 126 (133)
+..|.+.+ ....++..||... +..+.+.+.+.+..|.+.|||.|..+.+
T Consensus 23 r~~IL~~L-~~~~~~~~ela~~-------l~is~~tv~~~l~~L~~~gli~~~~~gr 71 (114)
T 2oqg_A 23 RWEILTEL-GRADQSASSLATR-------LPVSRQAIAKHLNALQACGLVESVKVGR 71 (114)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHH-------SSSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHH-HcCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCeeEEecCC
Confidence 34455555 4456776666543 4588899999999999999999865543
No 35
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=74.07 E-value=4.7 Score=27.03 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=30.5
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhcccc
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVER 121 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R 121 (133)
..|...+.....++-.+|... +..+.+.+-+.|..|.++|||+|
T Consensus 44 ~~iL~~l~~~~~~t~~eLa~~-------l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 44 LAMINVIYSTPGISVADLTKR-------LIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHSTTEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEe
Confidence 344444444455555555543 23678889999999999999999
No 36
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=74.04 E-value=4.6 Score=27.60 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=37.0
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+-.|.+.+.....+++.+|-.. +-.+.+.+.+++..|.+.|+|.|.
T Consensus 11 d~~il~~L~~~~~~s~~ela~~-------lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 11 DMQLVKILSENSRLTYRELADI-------LNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHH-------TTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3456777777788888887654 447889999999999999999973
No 37
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=73.95 E-value=2.5 Score=28.15 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHhhhhhccccC--CCCC-CceEec
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERT--ANST-DEYSYV 132 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~--~~d~-~~y~Yv 132 (133)
+..+.+.+-+.|..|.++|||.|. +.|+ ..++++
T Consensus 63 l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~L 99 (127)
T 2frh_A 63 LNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILV 99 (127)
T ss_dssp SSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEEC
T ss_pred HCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEE
Confidence 557888899999999999999994 4443 444443
No 38
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=72.94 E-value=4.9 Score=26.24 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHhhhhhccccC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+..+.+.+-+.|..|.++|||.|.
T Consensus 57 l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 57 MGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp CSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HCCChhHHHHHHHHHHHCCCeeec
Confidence 446677778899999999999994
No 39
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=72.83 E-value=4.7 Score=25.02 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=33.8
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+-.|...+.....++..+|... +..+.+.+-..+..|.+.|||.|..
T Consensus 18 ~~~iL~~L~~~~~~~~~ela~~-------l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKV-------LDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhcCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3444555544556777776654 3578889999999999999999743
No 40
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=72.67 E-value=4.2 Score=26.99 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-+.|..|.++|||+|..
T Consensus 61 l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 61 TKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HCCCHhhHHHHHHHHHHCCCeeccC
Confidence 4578888999999999999999854
No 41
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=71.91 E-value=3.9 Score=27.16 Aligned_cols=44 Identities=18% Similarity=0.378 Sum_probs=30.6
Q ss_pred hhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 72 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 72 aIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
.|...+.... ++-.+|... +..+.+.+-+.|..|.++|||.|..
T Consensus 42 ~iL~~l~~~~-~t~~eLa~~-------l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 42 HILMLLSEES-LTNSELARR-------LNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHTTCC-CCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHhCC-CCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCeEecc
Confidence 3444444455 666666544 3477888999999999999999965
No 42
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=71.90 E-value=5.6 Score=27.11 Aligned_cols=47 Identities=11% Similarity=0.267 Sum_probs=32.4
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..|...+.....++-.+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 48 q~~iL~~l~~~~~~t~~eLa~~-------l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 48 QFTALSVLAAKPNLSNAKLAER-------SFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHH-------HTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCcCeEecC
Confidence 3445555555555665555433 3467778889999999999999953
No 43
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=71.64 E-value=7.1 Score=24.53 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=38.5
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceEe
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSY 131 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Y 131 (133)
..|++.+.. ..++..||...+ ..+.+.+-+.+..|.+.|++.|..+....|.+
T Consensus 26 ~~Il~~L~~-~~~~~~ela~~l-------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~ 78 (98)
T 3jth_A 26 LQILCMLHN-QELSVGELCAKL-------QLSQSALSQHLAWLRRDGLVTTRKEAQTVYYT 78 (98)
T ss_dssp HHHHHHTTT-SCEEHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEECCTTCCEEE
T ss_pred HHHHHHHhc-CCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 345666655 677777776553 36788899999999999999987665555433
No 44
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=71.45 E-value=4.1 Score=28.32 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=35.9
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
-.|.+.+.....+++.||-..+ ..+.+.+.+++..|.+.|||+|.
T Consensus 13 ~~il~~L~~~~~~s~~ela~~l-------g~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 13 IKILQVLQENGRLTNVELSERV-------ALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHH-------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCEeee
Confidence 3466677777778888887653 36888999999999999999983
No 45
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=71.38 E-value=8 Score=25.00 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=32.1
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
|.+.+. ...++..||... + -..+.+.+-+.+..|.+.|||+|..
T Consensus 19 IL~~L~-~~~~~~~eLa~~----l--~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 19 ILXHLT-HGKKRTSELKRL----M--PNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp HHHHHT-TCCBCHHHHHHH----C--TTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH-hCCCCHHHHHHH----h--cCCCHHHHHHHHHHHHHCCCEEEee
Confidence 344443 456777777654 2 0478899999999999999999853
No 46
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=70.76 E-value=4.5 Score=27.54 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=36.4
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+-.|.+.+.....+++.||-..+ ..+.+.+.+.+..|.++|||+|.
T Consensus 7 d~~il~~L~~~~~~s~~ela~~l-------g~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELGRKI-------KLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 34566777777778888877553 47889999999999999999984
No 47
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=70.60 E-value=8 Score=25.29 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=31.0
Q ss_pred hhhhhhhcccc--cccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 71 AAIVRIMKSRK--QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 71 AaIVRIMK~~k--~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
..|...+.... .++-.+|... +..+.+.+-+.+..|.++|||+|..
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~-------l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESE-------FSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHH-------HCCCcchHHHHHHHHHHCCCEEeeC
Confidence 33344444433 4555555433 3467888999999999999999953
No 48
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=69.81 E-value=5 Score=27.30 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=37.4
Q ss_pred HHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 69 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 69 I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
++-.|.+.+.....++..+|-..+ -.+.+.+.+.+..|.+.|+|+|.
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~l-------g~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREI-------RIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHH-------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCcEEEE
Confidence 345567777777788888877653 37889999999999999999983
No 49
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=69.79 E-value=4.7 Score=26.64 Aligned_cols=48 Identities=10% Similarity=0.250 Sum_probs=31.2
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
+..|...+.....++-.+|... +..+.+.+-+.|..|.++|||.|..+
T Consensus 39 ~~~iL~~l~~~~~~~~~ela~~-------l~~~~~tvs~~l~~L~~~gli~r~~~ 86 (142)
T 2bv6_A 39 QFLVLTILWDESPVNVKKVVTE-------LALDTGTVSPLLKRMEQVDLIKRERS 86 (142)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHH-------TTCCTTTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHHH-------HCCChhhHHHHHHHHHHCCCEEeecC
Confidence 3344444444445555555433 34567778899999999999999643
No 50
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=69.61 E-value=7.2 Score=25.69 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=29.6
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
|...+.....++..+|... +..+.+.+-+.|..|.++|||.|..
T Consensus 34 iL~~l~~~~~~t~~~la~~-------l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 34 YLVRVCENPGIIQEKIAEL-------IKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCcCcCHHHHHHH-------HCCCHhHHHHHHHHHHHCCCEEeec
Confidence 3333333444554444433 3478889999999999999999953
No 51
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=69.53 E-value=4.9 Score=27.53 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=36.7
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhcccc
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVER 121 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R 121 (133)
+-.|.+.+.....+++.+|-..+ -.+.+.+.+++..|.+.|+|.|
T Consensus 10 d~~il~~L~~~~~~s~~ela~~l-------g~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 10 DRGILEALMGNARTAYAELAKQF-------GVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHH-------TSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHcCCcce
Confidence 44567777777788988887653 3788999999999999999998
No 52
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=69.24 E-value=15 Score=25.16 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=38.8
Q ss_pred hhhhhhcc-cccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 72 AIVRIMKS-RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 72 aIVRIMK~-~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
+|..++.. ...++-.||...+.+.. ..++.+.|=+.++.|.+.|.|.|-..
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~--~~is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKG--DAVGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 34444443 46799999998876543 35689999999999999999999654
No 53
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=69.05 E-value=8 Score=24.95 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=32.2
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCCC-CCHHHHHHHHHHhhhhhccccCC
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSFA-PSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F~-p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
|...+. ...+++.||... +. .+.+.+-+.+..|.+.|||+|..
T Consensus 30 IL~~L~-~~~~~~~eL~~~-------l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 30 IIFQIN-RRIIRYGELKRA-------IPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp HHHHHT-TSCEEHHHHHHH-------STTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH-hCCcCHHHHHHH-------cccCCHHHHHHHHHHHHHCCCEEEee
Confidence 444444 556777777643 43 78899999999999999999954
No 54
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=68.98 E-value=11 Score=21.65 Aligned_cols=52 Identities=13% Similarity=0.332 Sum_probs=36.5
Q ss_pred hhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceEe
Q psy16237 74 VRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSY 131 (133)
Q Consensus 74 VRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Y 131 (133)
..+++....++..||...+.+.- +.++.+.|.+.++ +-|.+ |-..+...+.|
T Consensus 11 ~~ll~~~~~~t~~el~~~l~~~~--~~vs~~Tv~R~L~---~lg~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 11 REIITSNEIETQDELVDMLKQDG--YKVTQATVSRDIK---ELHLV-KVPTNNGSYKY 62 (64)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHTT--CCCCHHHHHHHHH---HHTCE-EEEETTTEEEE
T ss_pred HHHHHcCCCCCHHHHHHHHHHhC--CCcCHHHHHHHHH---HcCCE-EEecCCCceee
Confidence 34456778899999998875431 5688999999998 55888 64433345666
No 55
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=68.81 E-value=7.1 Score=28.06 Aligned_cols=55 Identities=13% Similarity=0.101 Sum_probs=36.3
Q ss_pred hHHHHHhhhhhhhcccc-cccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCC
Q psy16237 65 RKLYLQAAIVRIMKSRK-QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANST 126 (133)
Q Consensus 65 R~~~I~AaIVRIMK~~k-~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~ 126 (133)
|...|=.+|...+..+. ..+..||..++ -.+.+.+.+.+..|-++|||.|+...+
T Consensus 6 ~q~~il~~I~~~~~~~g~~~s~~eia~~l-------gl~~~tv~~~l~~Le~~G~i~~~~~~~ 61 (196)
T 3k2z_A 6 RQRKVLLFIEEFIEKNGYPPSVREIARRF-------RITPRGALLHLIALEKKGYIERKNGKP 61 (196)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHH-------TSCHHHHHHHHHHHHHTTSEECC---T
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHc-------CCCcHHHHHHHHHHHHCCCEEecCCCc
Confidence 44555566666666554 57777766542 244456899999999999999986643
No 56
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=68.63 E-value=6.9 Score=26.46 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=31.0
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 55 ~~iL~~l~~~~~~t~~ela~~-------l~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 55 MRALAILSAKDGLPIGTLGIF-------AVVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp HHHHHHHHHSCSEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHH-------HCCChhHHHHHHHHHHHCCCEEecC
Confidence 334444444444555554432 3478889999999999999999953
No 57
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=68.53 E-value=8.6 Score=25.09 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=30.4
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
..|...+.....++-.+|.. . +..+.+.+-+.+..|.++|||.|.
T Consensus 37 ~~iL~~l~~~~~~~~~~la~----~---l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 37 FKVLCSIRCAACITPVELKK----V---LSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHHHSSBCHHHHHH----H---HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhcCCCCHHHHHH----H---HCCChHHHHHHHHHHHHCCCEEec
Confidence 33344444444555555542 2 347888899999999999999994
No 58
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=68.53 E-value=6 Score=26.25 Aligned_cols=48 Identities=6% Similarity=0.133 Sum_probs=33.5
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 33 q~~iL~~l~~~~~~t~~eLa~~-------l~~~~~tvs~~l~~Le~~Glv~r~~~ 80 (145)
T 3g3z_A 33 LFAVLYTLATEGSRTQKHIGEK-------WSLPKQTVSGVCKTLAGQGLIEWQEG 80 (145)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEeeccC
Confidence 4445555545555666666543 34778889999999999999999543
No 59
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=68.31 E-value=11 Score=25.48 Aligned_cols=52 Identities=8% Similarity=0.225 Sum_probs=39.5
Q ss_pred hhhhhhhcc-c-ccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 71 AAIVRIMKS-R-KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 71 AaIVRIMK~-~-k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
-+|..++.. . +.++-.||...+.+.. -..+.+.|=+.++.|.+.|.|.|-..
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~--~~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAG--EDVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhC--CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 345555544 3 5799999998876553 35688999999999999999999654
No 60
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=68.08 E-value=4.1 Score=27.12 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=32.0
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
..|..++-....++-.+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 39 ~~vL~~l~~~~~~t~~eLa~~-------l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 39 YIVLMAIENDEKLNIKKLGER-------VFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHSCTTCEEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHH-------HCCChhhHHHHHHHHHHCCCeEecC
Confidence 344444444555555555543 3478889999999999999999964
No 61
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=67.86 E-value=15 Score=24.09 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=29.6
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
|...+. ...++..+|... +..+.+.+-+.+..|.++|||.|..
T Consensus 42 iL~~l~-~~~~~~~ela~~-------l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 42 VLRATS-DGPKTMAYLANR-------YFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp HHHHHT-TSCBCHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHh-cCCcCHHHHHHH-------hCCCchhHHHHHHHHHHCCCEEeec
Confidence 333333 445555444432 4578889999999999999999853
No 62
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=67.77 E-value=9.6 Score=26.20 Aligned_cols=53 Identities=8% Similarity=0.102 Sum_probs=39.7
Q ss_pred hhhhhhhcc-cccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCC
Q psy16237 71 AAIVRIMKS-RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANS 125 (133)
Q Consensus 71 AaIVRIMK~-~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d 125 (133)
-+|..++.. .+.++-.||...+.+.. -..+.+.|=+.++.|.+.|+|.|-..+
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~--~~is~aTVYR~L~~L~e~Glv~~~~~~ 78 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKF--PNMSVATVYNNLRVFRESGLVKELTYG 78 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGC--TTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhC--CCCChhhHHHHHHHHHHCCCEEEEeeC
Confidence 445555544 56789999988765432 346899999999999999999996553
No 63
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=67.70 E-value=5.4 Score=28.34 Aligned_cols=47 Identities=13% Similarity=0.238 Sum_probs=38.2
Q ss_pred HHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 69 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 69 I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
++-.|.+.+.....+++.||-.++ ..+.+.+.+++..|.+.|+|+|.
T Consensus 28 ~d~~IL~~L~~~~~~s~~eLA~~l-------glS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQNDGKAPLREISKIT-------GLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCeEee
Confidence 344677777777889998887653 37889999999999999999984
No 64
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=66.72 E-value=6.1 Score=25.81 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHhhhhhccccC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+..+.+.+-+.|..|.++|||+|.
T Consensus 62 l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 62 TAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEEee
Confidence 568889999999999999999995
No 65
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=66.70 E-value=5.6 Score=27.14 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=36.5
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+-.|.+.+.....++..+|-..+ -.+.+.+.+.+..|.+.|||.|.
T Consensus 9 ~~~iL~~L~~~~~~s~~ela~~l-------g~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 9 DRILVRELAADGRATLSELATRA-------GLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH-------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 44566777777788888887653 36788999999999999999874
No 66
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=66.50 E-value=6.3 Score=26.96 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=36.5
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+-.|.+.+.....+++.+|-.++ ..+.+.+.+++..|.+.|+|+|.
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~l-------g~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKIT-------GLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH-------CSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 33566677777788888877653 47889999999999999999984
No 67
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=65.85 E-value=5 Score=26.96 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=29.6
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
..|...+.....++-.+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 44 ~~iL~~l~~~~~~~~~eLa~~-------l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 44 YLVMLTLWEENPQTLNSIGRH-------LDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp HHHHHHHHHSSSEEHHHHHHH-------HTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred HHHHHHHHHCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 333444444444444444333 4578889999999999999999964
No 68
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=65.67 E-value=3.6 Score=27.15 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=28.5
Q ss_pred cccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 80 RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 80 ~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
...++..||...+ ..+.+.+-+.+..|.++|||+|.
T Consensus 39 ~~~~t~~ela~~l-------~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 39 DKPLTISDIMEEL-------KISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp SSCEEHHHHHHHH-------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 4567776666543 36788889999999999999996
No 69
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=65.58 E-value=9.7 Score=25.48 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=32.8
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 45 ~~~iL~~l~~~~~~t~~ela~~-------l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 45 EWRVLACLVDNDAMMITRLAKL-------SLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHHHSSCSCBCHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHCCCcCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 3444555555555565555433 4578888999999999999999964
No 70
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=65.52 E-value=11 Score=26.24 Aligned_cols=52 Identities=12% Similarity=0.250 Sum_probs=40.2
Q ss_pred hhhhhhhcc-cccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 71 AAIVRIMKS-RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 71 AaIVRIMK~-~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
.+|..++.. ...++-.||...+.+.. -.++.+.|=+.++.|.+.|+|.|-..
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~--~~is~aTVYR~L~~L~e~Glv~~~~~ 82 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKD--KNTSISSVYRILNFLEKENFISVLET 82 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHS--TTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhC--CCCCHhhHHHHHHHHHHCCcEEEEEe
Confidence 445555544 46799999999886653 34688999999999999999999654
No 71
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=65.25 E-value=5.6 Score=26.97 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=29.7
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
|...+.....++-.+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 55 vL~~l~~~~~~t~~eLa~~-------l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 55 FLMRLYREDGINQESLSDY-------LKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp HHHHHHHSCSEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEEec
Confidence 3333333444444444332 4578889999999999999999953
No 72
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=65.12 E-value=6.1 Score=25.58 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=25.2
Q ss_pred cccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhcccc
Q psy16237 82 QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVER 121 (133)
Q Consensus 82 ~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R 121 (133)
-++-.||... ...+...+-..|..|.+++||.|
T Consensus 36 gi~qkeLa~~-------~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 36 GIWSRDVRYK-------SNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp CEEHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEE
Confidence 4555555433 55788889999999999999995
No 73
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=65.00 E-value=6.1 Score=28.02 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=36.9
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+-.|.+.+.....++..+|-..+ -.+.+.+.++|..|.+.|+|+|.
T Consensus 19 d~~IL~~L~~~~~~s~~eLA~~l-------glS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 19 DRNILRLLKKDARLTISELSEQL-------KKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH-------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCEEee
Confidence 33567777777788988887653 37889999999999999999873
No 74
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=64.93 E-value=5.5 Score=26.03 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=32.3
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..|...+.....++-.+|... +..+.+.+-+.+..|.++|||+|..
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~-------l~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATF-------FHVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEeec
Confidence 3344444444455665555543 3478889999999999999999953
No 75
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=64.60 E-value=8.2 Score=25.21 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=33.1
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
+..|...+.....++..+|... +..+.+.+-+.+..|.++|||.|..+
T Consensus 33 ~~~iL~~l~~~~~~~~~ela~~-------l~is~~~vs~~l~~L~~~gli~~~~~ 80 (142)
T 3bdd_A 33 RYSILQTLLKDAPLHQLALQER-------LQIDRAAVTRHLKLLEESGYIIRKRN 80 (142)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 3344444444455666555543 34788899999999999999998643
No 76
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=64.56 E-value=4.6 Score=27.87 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHhhhhhccccC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+..+.+.+-+.|..|.++|||.|.
T Consensus 69 l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 69 LGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEec
Confidence 447888899999999999999994
No 77
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=64.53 E-value=1.5 Score=27.86 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=30.0
Q ss_pred cccchHHHHHHHHhcCCCCCCHHH-HHHHHHHhhhhhccccCCCCCC
Q psy16237 82 QIRHNALIQEVLSQSKSFAPSISM-IKKCIESLIDKNYVERTANSTD 127 (133)
Q Consensus 82 ~l~h~eL~~ev~~~l~~F~p~~~~-iK~~IE~LIekeYl~R~~~d~~ 127 (133)
.++..||... +..+.+. +-+.|..|.++|||.+++.|+.
T Consensus 30 ~~t~~eLa~~-------l~is~~t~vs~~l~~Le~~Glv~~~~~drR 69 (95)
T 2pg4_A 30 EPSLAEIVKA-------SGVSEKTFFMGLKDRLIRAGLVKEETLSYR 69 (95)
T ss_dssp CCCHHHHHHH-------HCCCHHHHHTTHHHHHHHTTSEEEEEEETT
T ss_pred CCCHHHHHHH-------HCCCchHHHHHHHHHHHHCCCeecCCCCCC
Confidence 5777766544 3367777 8999999999999998777654
No 78
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=64.07 E-value=9.9 Score=25.16 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHhhhhhccccC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+..+.+.+-+.|..|.++|||.|.
T Consensus 66 l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 66 MYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HCCCchhHHHHHHHHHHCCCeeec
Confidence 457888999999999999999995
No 79
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=63.84 E-value=9.8 Score=26.41 Aligned_cols=52 Identities=12% Similarity=0.257 Sum_probs=39.7
Q ss_pred hhhhhhhcc-c-ccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 71 AAIVRIMKS-R-KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 71 AaIVRIMK~-~-k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
.+|..++.. . +.++-.||...+.+.. -..+.+.|=+.++.|.+.|.|.|-..
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~--~~is~aTVYR~L~~L~e~Glv~~~~~ 73 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLG--EEIGLATVYRVLNQFDDAGIVTRHHF 73 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 345555544 3 5799999998876653 35688999999999999999999654
No 80
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=63.60 E-value=8 Score=25.38 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=30.1
Q ss_pred hhhhh-cccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 73 IVRIM-KSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 73 IVRIM-K~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
|...+ .....++-.+|... +..+.+.+-+.|..|.++|||.|..
T Consensus 42 iL~~l~~~~~~~t~~~la~~-------l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 42 VLLHLARHRDSPTQRELAQS-------VGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHHCSSCCBHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHcCCCCCHHHHHHH-------hCCChhhHHHHHHHHHHCCCeeecC
Confidence 33344 44445555555433 3477888899999999999999954
No 81
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=63.40 E-value=6.9 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-+.|..|.++|||+|..
T Consensus 71 l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 71 LYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred hCCCcccHHHHHHHHHHCCCEeecC
Confidence 4478889999999999999999954
No 82
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=62.69 E-value=10 Score=25.16 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-+.|..|.++|||+|..
T Consensus 64 l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 64 LQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HCCCHHHHHHHHHHHHHCCCeeecC
Confidence 4478888999999999999999953
No 83
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=62.51 E-value=6.7 Score=24.12 Aligned_cols=50 Identities=16% Similarity=0.277 Sum_probs=38.4
Q ss_pred HHHHhhhhhhhcccccccchHHHHHHHHhcCC-CCC-CHHHHHHHHHHhhhh
Q psy16237 67 LYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAP-SISMIKKCIESLIDK 116 (133)
Q Consensus 67 ~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~-F~p-~~~~iK~~IE~LIek 116 (133)
..+.++++=||.+.+.++...++..++..|.. -.+ .....++.+|.|..+
T Consensus 8 e~Lg~iv~eil~~g~~vsnKaIi~~LI~rLE~~~d~~~~d~yR~lLe~v~~~ 59 (64)
T 2oxl_A 8 AVLGQAVTNLMLSGDNVNNKNIILSLIHSLETTSDILKADVIRKTLEIVLRY 59 (64)
T ss_dssp HHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 46788899999999999999999999999984 222 344556666666553
No 84
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=61.94 E-value=6.6 Score=26.49 Aligned_cols=46 Identities=9% Similarity=0.236 Sum_probs=30.5
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
..|...+.....++-.+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 52 ~~iL~~l~~~~~~t~~ela~~-------l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 52 WRVITILALYPGSSASEVSDR-------TAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHSTTCCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHhCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEeeec
Confidence 344444444455555555433 3478888999999999999999954
No 85
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=61.76 E-value=10 Score=26.91 Aligned_cols=55 Identities=9% Similarity=0.157 Sum_probs=44.9
Q ss_pred HHHhhhhhhhcccccccchHHHHHHHHhcCC-CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 68 YLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 68 ~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
.++-+|..++.. +.++-.||...+...... +.++...|-..+..|-+.|||.+..
T Consensus 2 ~l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 2 SLPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp CHHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred chHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 355666677764 678888999888766666 7899999999999999999999864
No 86
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=61.71 E-value=4.2 Score=28.22 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-+.|..|.++|||+|..
T Consensus 78 l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 78 IGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 4478889999999999999999964
No 87
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=60.93 E-value=12 Score=24.83 Aligned_cols=52 Identities=8% Similarity=0.062 Sum_probs=35.0
Q ss_pred hhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceE
Q psy16237 72 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYS 130 (133)
Q Consensus 72 aIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~ 130 (133)
.|...+.....++..||... +..+.+.+-+.+..|.+.|++.+..+.+..|.
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~-------l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y 97 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANI-------LGVTIANASHHLRTLYKQGVVNFRKEGKLALY 97 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEC----CCEE
T ss_pred HHHHHHHHCCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCeEEEEECCEEEE
Confidence 45666665566777766544 23678889999999999999998765544443
No 88
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=60.64 E-value=10 Score=26.10 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=35.8
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC--CCCCceEe
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA--NSTDEYSY 131 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~--~d~~~y~Y 131 (133)
|.+.+. ...+++.||...+ ..+.+.+-+.+..|.+.|||+|.. .|+ ...|
T Consensus 29 IL~~L~-~g~~~~~eLa~~l-------gis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y 80 (146)
T 2f2e_A 29 IVRDAF-EGLTRFGEFQKSL-------GLAKNILAARLRNLVEHGVMVAVPAESGS-HQEY 80 (146)
T ss_dssp HHHHHH-TTCCSHHHHHHHH-------CCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEE
T ss_pred HHHHHH-hCCCCHHHHHHHh-------CCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEE
Confidence 444443 4567888876553 377888999999999999999954 355 5555
No 89
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=60.32 E-value=24 Score=23.60 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=36.2
Q ss_pred ccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 79 SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 79 ~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
....++-.||...+.+.. ...+.+.|=+.++.|.+.|+|.|-..
T Consensus 23 ~~~~~sa~ei~~~l~~~~--~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRG--ENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp CCSCEEHHHHHHHHHHTT--CCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCCCCCHHHHHHHHHHhC--CCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 456799999999876543 35688999999999999999999654
No 90
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=59.97 E-value=6.2 Score=26.14 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=28.4
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
+..|...+-....++-.+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 39 ~~~vL~~l~~~~~~t~~eLa~~-------l~~~~~tvs~~l~~L~~~Glv~r~~~ 86 (142)
T 3ech_A 39 DVHVLKLIDEQRGLNLQDLGRQ-------MCRDKALITRKIRELEGRNLVRRERN 86 (142)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHH-------HC---CHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHhCCCcCHHHHHHH-------hCCCHHHHHHHHHHHHHCCCEeeccC
Confidence 3444444444455665555433 33667778899999999999999643
No 91
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=59.76 E-value=11 Score=24.60 Aligned_cols=47 Identities=11% Similarity=0.165 Sum_probs=36.5
Q ss_pred Hhhhhhhhcccccc-cchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 70 QAAIVRIMKSRKQI-RHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 70 ~AaIVRIMK~~k~l-~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
...|+..++....+ +-.+|..+ |..+..-|.+++..|.+.|+|.+..
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~~-------lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIADR-------VGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 45555667666555 66666544 6789999999999999999999876
No 92
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=59.60 E-value=9.2 Score=25.33 Aligned_cols=44 Identities=14% Similarity=0.320 Sum_probs=28.9
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
|...+.....++-.+|... +..+.+.+-+.|..|.++|||.|..
T Consensus 45 iL~~l~~~~~~t~~ela~~-------l~~~~~tvs~~l~~Le~~Glv~r~~ 88 (148)
T 3nrv_A 45 IISVLSSASDCSVQKISDI-------LGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
T ss_dssp HHHHHHHSSSBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHcCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEeec
Confidence 3333334445555554433 3478888999999999999999963
No 93
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=59.54 E-value=16 Score=23.94 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-+.|..|.++|||.|..
T Consensus 60 l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 60 ERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred hCCChhhHHHHHHHHHHCCCEeeCC
Confidence 4578899999999999999999963
No 94
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=59.37 E-value=4.4 Score=25.63 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCCCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTANST 126 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~d~ 126 (133)
+..+.+.+-+.|..|.++||| +++.|+
T Consensus 40 l~i~~~tvs~~l~~Le~~Glv-~~~~d~ 66 (95)
T 2qvo_A 40 VNSPHSYVWLIIKKFEEAKMV-ECELEG 66 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSE-EEEEET
T ss_pred HCcCHHHHHHHHHHHHHCcCc-cCCCCC
Confidence 557889999999999999999 555443
No 95
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=59.29 E-value=5.7 Score=27.08 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-+.|..|.++|||+|..
T Consensus 77 l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 77 GVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 5688899999999999999999964
No 96
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=59.21 E-value=3.8 Score=26.99 Aligned_cols=46 Identities=9% Similarity=0.187 Sum_probs=30.7
Q ss_pred hhhhhhhcccc--cccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 71 AAIVRIMKSRK--QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 71 AaIVRIMK~~k--~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
..|...+-... .++-.+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~-------l~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKA-------LQRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhcCCCCcCHHHHHHH-------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 33344443332 5555555433 3478888999999999999999853
No 97
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=58.84 E-value=14 Score=26.07 Aligned_cols=53 Identities=9% Similarity=0.208 Sum_probs=40.9
Q ss_pred hhhhhhhcc-cccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 71 AAIVRIMKS-RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 71 AaIVRIMK~-~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
-+|..++.. .+.++-.||+..+.+.......+.+.|=+.++.|.+.|.|.|-.
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 445555544 47899999999988762113568899999999999999999964
No 98
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=58.50 E-value=17 Score=24.56 Aligned_cols=43 Identities=16% Similarity=0.348 Sum_probs=32.4
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCC-CCCHHHHHHHHHHhhhhhccccCC
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSF-APSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F-~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
|...+. ...+++.||... + -.+.+.+-+.+..|.+.|||+|..
T Consensus 40 IL~~L~-~g~~~~~eLa~~-------l~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 40 ILVALR-DGTHRFSDLRRX-------MGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp HHHHGG-GCCEEHHHHHHH-------STTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHH-cCCCCHHHHHHH-------hccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 444444 566788777654 3 378899999999999999999953
No 99
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=58.33 E-value=8.4 Score=25.11 Aligned_cols=43 Identities=9% Similarity=0.234 Sum_probs=31.5
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCC-CCCHHHHHHHHHHhhhhhccccCC
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSF-APSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F-~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
|...+. ...++..||... + ..+.+.+-..+..|.++|||+|..
T Consensus 27 IL~~L~-~~~~~~~eLa~~-------l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 27 LMDELF-QGTKRNGELMRA-------LDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp HHHHHH-HSCBCHHHHHHH-------STTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHH-hCCCCHHHHHHH-------hccCCHHHHHHHHHHHHHCCCEEEee
Confidence 444443 356777776543 3 478899999999999999999953
No 100
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=58.18 E-value=35 Score=22.58 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=47.7
Q ss_pred HHhHHHHHhhhhhhhcccccccchHHHHHHHHhcCC-CCCCHHHHHHHHHHhhhhhccccC
Q psy16237 63 EDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 63 ~~R~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+-++..++.+|..++.. +.+.-.+|...+.+. . +.++...+=..+..|-+.|||.+.
T Consensus 6 ~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~--g~~~is~gtlY~~L~rLe~~GlI~~~ 63 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR-RETYGYEITRHLNDL--GFTEVVEGTVYTILVRLEKKKLVNIE 63 (117)
T ss_dssp HHHHHHHHHHHHHHHHH-SCBCHHHHHHHHHHH--TCTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHChHHHHHHHHHHc-CCCCHHHHHHHHHHc--CCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 34567888898888874 677778999988764 5 689999999999999999999986
No 101
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=58.12 E-value=7.3 Score=25.76 Aligned_cols=26 Identities=4% Similarity=0.158 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
+..+.+.+-+.|..|.++|||+|..+
T Consensus 64 l~~~~~tvs~~l~~L~~~glv~r~~~ 89 (147)
T 1z91_A 64 LYLDSGTLTPMLKRMEQQGLITRKRS 89 (147)
T ss_dssp TTCCHHHHHHHHHHHHHHTSEECCBC
T ss_pred HCCCcCcHHHHHHHHHHCCCEEeccC
Confidence 56889999999999999999999643
No 102
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=57.97 E-value=4 Score=28.07 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHhhhhhccccC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+..+.+.+-..|+.|.++|||.|.
T Consensus 56 l~~~~~tvs~~v~~Le~~GlV~R~ 79 (151)
T 4aik_A 56 IGIEQPSLVRTLDQLEEKGLITRH 79 (151)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HCcCHHHHHHHHHHHHhCCCeEee
Confidence 457888899999999999999985
No 103
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=57.13 E-value=15 Score=24.34 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=45.0
Q ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHhcCC-CCCCHHHHHHHHHHhhhhhccccC
Q psy16237 66 KLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 66 ~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+..++.+|..++. .+.+.-.+|...+.+ .. +.++...+=..+..|-+.|||++.
T Consensus 7 ~g~l~~~IL~~L~-~~~~~Gyei~~~l~~--~~~~~is~gtlY~~L~rLe~~GlI~~~ 61 (115)
T 4esb_A 7 KGVLEGCILYIIS-QEEVYGYELSTKLNK--HGFTFVSEGSIYPLLLRMQKEKLIEGT 61 (115)
T ss_dssp TTTHHHHHHHHHH-HSCEEHHHHHHHHHH--TTCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCHHHHHHHHHHH-cCCCCHHHHHHHHHH--cCCCCCCcChHHHHHHHHHHCCCeEEE
Confidence 4567778888886 467777899998876 45 789999999999999999999985
No 104
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.09 E-value=8 Score=25.25 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=31.7
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||.|..
T Consensus 38 ~~~iL~~l~~~~~~t~~ela~~-------l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 38 QWRVIRILRQQGEMESYQLANQ-------ACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-------HCCCHhHHHHHHHHHHHCCCEEeec
Confidence 3334444444444555554322 5578899999999999999999963
No 105
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=55.58 E-value=7.9 Score=26.04 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-+.|..|.++|||.|..
T Consensus 72 l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 72 LKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp CSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred HCCChhhHHHHHHHHHHCCCEEeec
Confidence 3456677788999999999999963
No 106
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=55.00 E-value=23 Score=24.26 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=37.3
Q ss_pred hhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC--CCCCCceEe
Q psy16237 72 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT--ANSTDEYSY 131 (133)
Q Consensus 72 aIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~--~~d~~~y~Y 131 (133)
.|.+.+. ...+.+.||... +. ..+...+-+.+..|.+.|+|+|. +.|+....|
T Consensus 30 ~IL~~L~-~g~~rf~eL~~~----l~--gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y 84 (131)
T 4a5n_A 30 ILFYHMI-DGKKRFNEFRRI----CP--SITQRMLTLQLRELEADGIVHREVYHQVPPKVEY 84 (131)
T ss_dssp HHHHHHT-TSCBCHHHHHHH----CT--TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHh-cCCcCHHHHHHH----hc--ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEE
Confidence 3445554 567888887654 21 46888999999999999999995 334444444
No 107
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=54.33 E-value=20 Score=26.84 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=35.0
Q ss_pred hcccccc-cchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceE
Q psy16237 77 MKSRKQI-RHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYS 130 (133)
Q Consensus 77 MK~~k~l-~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~ 130 (133)
++..-.+ +-.+|..+ |.++...+++++..|.+.|||.| ... .+|+
T Consensus 30 ~~~g~~lPse~~La~~-------~~vSr~tvr~Al~~L~~~G~i~~-~g~-Gt~V 75 (248)
T 3f8m_A 30 MRIGDPFPAEREIAEQ-------FEVARETVRQALRELLIDGRVER-RGR-TTVV 75 (248)
T ss_dssp CCTTCBCCCHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEE-ETT-EEEE
T ss_pred CCCCCcCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEe-CCC-EEEE
Confidence 6666666 56666544 88999999999999999999999 663 3443
No 108
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=54.13 E-value=4.8 Score=27.40 Aligned_cols=28 Identities=7% Similarity=0.201 Sum_probs=23.3
Q ss_pred cCC-CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 96 SKS-FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 96 l~~-F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
|.. +..+.+.+-+.|..|.++|||+|..
T Consensus 57 La~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 57 IGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 444 5678899999999999999999953
No 109
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=53.95 E-value=4.2 Score=27.21 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-..|..|.++|||+|..
T Consensus 67 l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 67 FGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp ------CHHHHHHHHHHTTSBCCC-
T ss_pred HCCChhHHHHHHHHHHHCCCEEeeC
Confidence 4466777789999999999999964
No 110
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=53.71 E-value=22 Score=23.61 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=46.8
Q ss_pred HHhHHHHHhhhhhhhcccccccchHHHHHHHHhcCC-CCCCHHHHHHHHHHhhhhhccccC
Q psy16237 63 EDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 63 ~~R~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
+-++..++.+|-.++.. +.+.--+|...+.+ .. +.++...+=..+..|-+.|||++.
T Consensus 8 ~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~--~g~~~is~gtlY~~L~rLe~~GlI~~~ 65 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR-KETYGYEITKILND--QGFTEIVEGTVYTILLRLEKNQWVIAE 65 (116)
T ss_dssp HHHTTHHHHHHHHHHHH-SCBCHHHHHHHHHT--TSCSSCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhhHHHHHHHHHhc-CCCCHHHHHHHHHH--cCCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 34566788898888874 56666799998876 44 689999999999999999999985
No 111
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=53.66 E-value=6.7 Score=24.44 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=32.0
Q ss_pred hhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 75 RIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 75 RIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
.+......++-.||... +..+.+.+-+.+..|.++|||.|..+
T Consensus 29 ~l~~~~~~~t~~ela~~-------l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 29 KMVEIEKPITSEELADI-------FKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHHCSCEEHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHcCCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 33444566777666644 45788899999999999999999654
No 112
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=53.58 E-value=13 Score=23.77 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=34.7
Q ss_pred HHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCC
Q psy16237 69 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANST 126 (133)
Q Consensus 69 I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~ 126 (133)
....|+..+. ...++..||... +..+.+.+-+.+..|.+.|++.+..+..
T Consensus 27 ~r~~IL~~L~-~~~~~~~ela~~-------l~is~stvs~~L~~L~~~Glv~~~~~gr 76 (106)
T 1r1u_A 27 NRIRIMELLS-VSEASVGHISHQ-------LNLSQSNVSHQLKLLKSVHLVKAKRQGQ 76 (106)
T ss_dssp HHHHHHHHHH-HCCBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHHH-hCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3344555555 455677666544 3367888999999999999999865543
No 113
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=53.40 E-value=13 Score=26.89 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-+.|..|.++|||.|..
T Consensus 72 l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 72 GVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp TTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEec
Confidence 5688999999999999999999954
No 114
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=53.25 E-value=21 Score=23.46 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=43.2
Q ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHhcCCCC--CCH-HHHHHHHHHhhhhhccccCC
Q psy16237 66 KLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFA--PSI-SMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 66 ~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~--p~~-~~iK~~IE~LIekeYl~R~~ 123 (133)
...++.+|..++.. +.++..+|...+.+ ...+. ++. ..+-..+..|-+.|||++..
T Consensus 11 ~~~~~~~IL~~L~~-~~~~gyel~~~l~~-~g~~~~~is~~~tly~~L~~Le~~GlI~~~~ 69 (118)
T 2esh_A 11 GWWLASTILLLVAE-KPSHGYELAERLAE-FGIEIPGIGHMGNIYRVLADLEESGFLSTEW 69 (118)
T ss_dssp HHHHHHHHHHHHHH-SCBCHHHHHHHHHT-TCCSSTTCCCCCCHHHHHHHHHHTTSEEEEE
T ss_pred cchHHHHHHHHHHc-CCCCHHHHHHHHHH-hCCcccCCCCcchHHHHHHHHHHCCCeEEEe
Confidence 34577777787754 67888899988765 22144 888 99999999999999999863
No 115
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=52.69 E-value=18 Score=22.71 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=35.2
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCce
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 129 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y 129 (133)
..|++.+.. ..++..||...+ ..+.+.+-+.+..|.+.|++.+..+....|
T Consensus 26 ~~Il~~L~~-~~~~~~ela~~l-------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~ 76 (102)
T 3pqk_A 26 LMLVCTLVE-GEFSVGELEQQI-------GIGQPTLSQQLGVLRESGIVETRRNIKQIF 76 (102)
T ss_dssp HHHHHHHHT-CCBCHHHHHHHH-------TCCTTHHHHHHHHHHHTTSEEEECSSSCCE
T ss_pred HHHHHHHHh-CCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 345666643 568888776554 245567789999999999998865544444
No 116
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=52.55 E-value=5.9 Score=26.95 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCCCCCceEec
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 132 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yv 132 (133)
|..+.+.-++.|+.|-++|.|..-...+...+|.
T Consensus 70 lkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 103 (108)
T 3iz6_V 70 LRINGSLARQAIKDLESRGAIRVVSVHSSQLIYT 103 (108)
T ss_dssp HHTCCHHHHHHHHHHHHHHTSCEECCCTTSCCEE
T ss_pred hcccHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 6688888899999999999999877666777774
No 117
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=52.36 E-value=4.9 Score=26.93 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=25.9
Q ss_pred cccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 82 QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 82 ~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
.++-.+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 54 ~~t~~eLa~~-------l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 54 GVNQRGVAAT-------MGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp CCCSHHHHHH-------HTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CcCHHHHHHH-------HCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 4566666543 3367888899999999999999953
No 118
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=51.93 E-value=10 Score=25.19 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-+.|..|.++|||.|..
T Consensus 61 l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 61 MEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEeecC
Confidence 4578889999999999999999953
No 119
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=51.92 E-value=16 Score=23.67 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=42.4
Q ss_pred hHHHHHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 65 RKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 65 R~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
++..++.+|..++.. +.+...+|..++.+. +.++...+-..+..|-+.|||+|..
T Consensus 6 ~~g~l~~~IL~~L~~-~~~~gyel~~~l~~~---~~i~~~tly~~L~~Le~~GlI~~~~ 60 (108)
T 3l7w_A 6 SALLIEYLILAIVSK-HDSYGYDISQTIKLI---ASIKESTLYPILKKLEKAGYLSTYT 60 (108)
T ss_dssp CHHHHHHHHHHHHHH-SCEEHHHHHHHHTTT---CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHc-CCCcHHHHHHHHHHH---hCCCcChHHHHHHHHHHCCCeEEEe
Confidence 345677778887764 566666777665431 7799999999999999999999963
No 120
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=51.56 E-value=9.4 Score=26.99 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-+.|..|.++|||+|..
T Consensus 67 l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 67 MGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 4477888999999999999999953
No 121
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=50.95 E-value=10 Score=24.89 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=32.4
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 35 ~~~iL~~l~~~~~~~~~~la~~-------l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 35 QFDILQKIYFEGPKRPGELSVL-------LGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-------HCCCchhHHHHHHHHHHCCCeeecC
Confidence 3334444444455666555543 3478888999999999999999963
No 122
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=50.77 E-value=19 Score=23.63 Aligned_cols=51 Identities=12% Similarity=0.030 Sum_probs=34.9
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCce
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 129 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y 129 (133)
..|++.+. ...++..||... +..+.+.+-+.+..|.+.||+.+..+.+..|
T Consensus 24 ~~IL~~L~-~~~~~~~eLa~~-------lgis~stvs~~L~~L~~~GlV~~~~~gr~~~ 74 (118)
T 2jsc_A 24 CRILVALL-DGVCYPGQLAAH-------LGLTRSNVSNHLSCLRGCGLVVATYEGRQVR 74 (118)
T ss_dssp HHHHHHHH-TTCCSTTTHHHH-------HSSCHHHHHHHHHHHTTTTSEEEEECSSSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCceEEEEECCEEE
Confidence 34555554 345676666543 3478889999999999999999865543333
No 123
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=50.19 E-value=19 Score=24.02 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=36.4
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCC--CCCHHHHHHHHHHhhhhhccccCC
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSF--APSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F--~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+-.|...++....++..+|-.. + ..+.+.+.+++..|-+.|+|++..
T Consensus 15 d~~IL~~L~~~g~~s~~eLA~~-------l~~giS~~aVs~rL~~Le~~GLV~~~~ 63 (111)
T 3b73_A 15 DDRILEIIHEEGNGSPKELEDR-------DEIRISKSSVSRRLKKLADHDLLQPLA 63 (111)
T ss_dssp HHHHHHHHHHHSCBCHHHHHTS-------TTCCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHHcCCCCHHHHHHH-------HhcCCCHHHHHHHHHHHHHCCCEEecC
Confidence 3456667777677777666532 5 689999999999999999999863
No 124
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=49.66 E-value=4.7 Score=26.77 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-+.|..|.++|||.|..
T Consensus 60 l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 60 YFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HCCChhHHHHHHHHHHHCCCEEecc
Confidence 4578889999999999999999964
No 125
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=48.82 E-value=9.7 Score=28.34 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
|.++...+++++..|.+.|||.|..+
T Consensus 43 ~~vSr~tvr~Al~~L~~~G~i~~~~g 68 (236)
T 3edp_A 43 YSSSRTTIRRAVDLLVEEGLVVRKNG 68 (236)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEECC
Confidence 78899999999999999999999765
No 126
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=47.86 E-value=7.1 Score=25.36 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=35.8
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCce
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 129 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y 129 (133)
...|+..+.. ..++..||... +..+.+.+-+.+..|.+.|+|++..+....|
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~-------lgis~stvs~~L~~L~~~GlV~~~~~gr~~~ 78 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATA-------TGMNLTTASANLQALKSGGLVEARREGTRQY 78 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHH-------HTCCHHHHHHHHHHHHHHTSEEEEEETTEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 3445555553 56677666544 3477888999999999999999865443333
No 127
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=47.65 E-value=15 Score=24.41 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=31.1
Q ss_pred hhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 74 VRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 74 VRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
.++......++-.+|... +..+.+.+.+.|..|.++|||.|..
T Consensus 14 ~~l~~~~~~~~~~ela~~-------l~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 14 YMLIEEKGYARVSDIAEA-------LAVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp HHHHHHHSSCCHHHHHHH-------HTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHhhcCCCCHHHHHHH-------hCCCHHHHHHHHHHHHHCCCEEEee
Confidence 344444455666555543 4478888999999999999999975
No 128
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=47.54 E-value=48 Score=21.12 Aligned_cols=47 Identities=9% Similarity=0.106 Sum_probs=34.2
Q ss_pred hhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCC
Q psy16237 72 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANST 126 (133)
Q Consensus 72 aIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~ 126 (133)
.|..+++... ++..||-.+ +-.+.+.+.+.+..|-+.|+|.+....+
T Consensus 21 ~IL~lL~~~g-~sa~eLAk~-------LgiSk~aVr~~L~~Le~eG~I~~~~~~P 67 (82)
T 1oyi_A 21 EAIKTIGIEG-ATAAQLTRQ-------LNMEKREVNKALYDLQRSAMVYSSDDIP 67 (82)
T ss_dssp HHHHHHSSST-EEHHHHHHH-------SSSCHHHHHHHHHHHHHHTSSEECSSSS
T ss_pred HHHHHHHHcC-CCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEeCCCCC
Confidence 3445666444 665555432 5589999999999999999999986654
No 129
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=47.17 E-value=21 Score=22.27 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=32.6
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
..|.+.+ ...++..||... +..+.+.+.+.+..|.+.|+|.|..
T Consensus 34 ~~Il~~L--~~~~~~~eLa~~-------l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 34 RKILRML--DKGRSEEEIMQT-------LSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHH--HTTCCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHH--cCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 3455555 455777666544 3478889999999999999999875
No 130
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=46.80 E-value=8.7 Score=25.79 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
|..+...+++++..|.+.|||.+...
T Consensus 47 ~~vSr~tvr~Al~~L~~~G~i~~~~g 72 (125)
T 3neu_A 47 LAVNPNTVSRAYQELERAGYIYAKRG 72 (125)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HCcCHHHHHHHHHHHHHCCeEEEecC
Confidence 67889999999999999999998765
No 131
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=45.74 E-value=20 Score=23.62 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=31.9
Q ss_pred hhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
|..+-.....++..+|-.. +..+.+.+-+.+..|.++|||.|..
T Consensus 22 l~~l~~~~~~~s~~ela~~-------l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 22 IKRYNDSGEGAKINRIAKD-------LKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp HHHHHTTTSCBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHhcCCCcCHHHHHHH-------hCCChHHHHHHHHHHHHCCCEEecC
Confidence 3344444556676666543 3478888999999999999999975
No 132
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=45.68 E-value=15 Score=23.55 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHhhhhhccccC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
|..+.+.+.+.+..|.+.||+.+.
T Consensus 43 lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 43 LNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 778999999999999999999986
No 133
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=45.54 E-value=20 Score=28.35 Aligned_cols=57 Identities=12% Similarity=0.202 Sum_probs=45.2
Q ss_pred HHHHhHHHHHhhhhhhhcccc-cccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 61 VDEDRKLYLQAAIVRIMKSRK-QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 61 v~~~R~~~I~AaIVRIMK~~k-~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
....+....-+-+.++|+.+. ..+.+||.+.- . |.+=.-++-.-++.|++|++|++.
T Consensus 215 ~I~sk~~~~~~~Ll~~m~ek~~~wS~~Ei~~~p----~-~~~~~idle~iL~~Lv~k~lI~~~ 272 (290)
T 3c18_A 215 LLQSKVLSGGKYLFEVMRERDRPWTMHELMEES----R-LTELKVDLGSLVDFFIRKGLIRIS 272 (290)
T ss_dssp HHHHTHHHHHHHHHHHHTTSSSCEEHHHHHHCG----G-GGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHhcCc----c-cccccCCHHHHHHHHHHcCCeEEe
Confidence 345556666788999999998 79999988541 1 667777788889999999999996
No 134
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=45.11 E-value=17 Score=29.10 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=28.0
Q ss_pred cCC-CCCCHHHHHHHHHHhhhhhccccC--CCC-CCceEec
Q psy16237 96 SKS-FAPSISMIKKCIESLIDKNYVERT--ANS-TDEYSYV 132 (133)
Q Consensus 96 l~~-F~p~~~~iK~~IE~LIekeYl~R~--~~d-~~~y~Yv 132 (133)
|.. ...+.+.+-+.|+.|.++|||+|. +.| +..++|+
T Consensus 426 l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~l 466 (487)
T 1hsj_A 426 IAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYV 466 (487)
T ss_dssp HHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEEC
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEE
Confidence 444 667888889999999999999984 344 4566665
No 135
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=44.91 E-value=9.8 Score=25.00 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
|..+..-+++++..|.+.|+|.+...
T Consensus 43 ~~vSr~tvr~al~~L~~~Gli~~~~~ 68 (113)
T 3tqn_A 43 YQINPLTVSKAYQSLLDDNVIEKRRG 68 (113)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 67889999999999999999998765
No 136
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=44.71 E-value=27 Score=30.41 Aligned_cols=53 Identities=13% Similarity=0.328 Sum_probs=34.7
Q ss_pred HHHhhhhhhhccc-ccccchHHHHHHHHhcCC-CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 68 YLQAAIVRIMKSR-KQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 68 ~I~AaIVRIMK~~-k~l~h~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
.-+|.+++.|+.- |.+.-.+| .++...-.. ..|... =.-|+.|++|+||++..
T Consensus 491 yTEasLi~~Me~~~k~v~d~e~-~~~lk~~~GIGtpATr--A~iIe~L~~R~Yv~~~~ 545 (659)
T 1i7d_A 491 FTDATLLSAMTGIARFVQDKDL-KKILRATDGLGTEATR--AGIIELLFKRGFLTKKG 545 (659)
T ss_dssp EEHHHHHHHHHTGGGGCCCHHH-HHHHHHTTSSSCTTTH--HHHHHHHHHTTSEEESS
T ss_pred CCHHHHHHHHHHhccccCCHHH-HHHHhhccCCCccccH--HHHHHHHHhCCcEeecC
Confidence 4568888888864 44554444 333333334 666433 56799999999999964
No 137
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=44.40 E-value=24 Score=22.61 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
...+...+.+-++.|.++|||++..+
T Consensus 30 ~~ls~~~~~~~l~~L~~~GLI~~~~~ 55 (95)
T 1r7j_A 30 ANLSYALTGRYIKMLMDLEIIRQEGK 55 (95)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred hCcCHHHHHHHHHHHHHCCCeEEECC
Confidence 34889999999999999999999743
No 138
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=44.34 E-value=11 Score=28.71 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
|.++...+++++..|.+.|||.|...
T Consensus 63 ~~vSr~tvr~Al~~L~~~G~i~~~~g 88 (272)
T 3eet_A 63 YGVSDTVALEARKVLMAEGLVEGRSG 88 (272)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 77899999999999999999999765
No 139
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=44.21 E-value=5.6 Score=27.32 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-+.|..|.++|||+|..
T Consensus 72 l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 72 LISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp C---CTHHHHHHHHHHHTTSEEEEE
T ss_pred HCCChhhHHHHHHHHHHCCCEeecC
Confidence 4466778889999999999999954
No 140
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=42.08 E-value=14 Score=27.37 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=31.3
Q ss_pred hhcccccc-cchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 76 IMKSRKQI-RHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 76 IMK~~k~l-~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
.++....+ +-.+|..+ |.++...+++++..|.+.|+|.|..+
T Consensus 22 ~~~~g~~lPse~~La~~-------~~vSr~tvr~Al~~L~~~g~i~~~~g 64 (239)
T 3bwg_A 22 QLQQGDKLPVLETLMAQ-------FEVSKSTITKSLELLEQKGAIFQVRG 64 (239)
T ss_dssp TCCTTCBCCCHHHHHHH-------TTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCCCcCHHHHHHH-------HCCCHHHHHHHHHHHHHCCcEEEeCC
Confidence 34444445 44454433 88999999999999999999999765
No 141
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=42.06 E-value=57 Score=22.86 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=43.9
Q ss_pred HHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceEec
Q psy16237 69 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 132 (133)
Q Consensus 69 I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yv 132 (133)
-++.|..+.+.++..+-.||.....++ .|.++.+.|.+-|..| +.++--..+ ..|.|.
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~--G~~VtqaTisRDL~eL---~~vKv~~~~-g~~~Y~ 63 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREA--GFNVTQATVSRDIKEM---QLVKVPMAN-GRYKYS 63 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHT--TCCCCHHHHHHHHHHT---TCEEEECSS-SCEEEE
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHc--CCCcCHHHHHHHHHHc---CCeEEECCC-CCEEEE
Confidence 457788999999999999999886544 3999999999877766 666543333 568885
No 142
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=41.71 E-value=27 Score=25.21 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=35.9
Q ss_pred HHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 69 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 69 I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
.+..|.+.+. ...++..||... +..+.+.+.+.+..|.+.|+|+|.
T Consensus 21 ~~~~IL~~L~-~~~~s~~eLA~~-------lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 21 TRRKILKLLR-NKEMTISQLSEI-------LGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHHHT-TCCBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3445666666 467888887755 337889999999999999999997
No 143
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=40.97 E-value=18 Score=22.95 Aligned_cols=49 Identities=8% Similarity=0.190 Sum_probs=35.0
Q ss_pred HHhhhhh-hhcccccc-cchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 69 LQAAIVR-IMKSRKQI-RHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 69 I~AaIVR-IMK~~k~l-~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
|...|.. .++....+ +..+|... |..+...+.+.+..|.+.|||.+...
T Consensus 20 i~~~I~~~~l~~g~~lps~~eLa~~-------~~vSr~tvr~al~~L~~~Gli~~~~g 70 (102)
T 1v4r_A 20 FRTLIKSGELAPGDTLPSVADIRAQ-------FGVAAKTVSRALAVLKSEGLVSSRGA 70 (102)
T ss_dssp HHHHTTTTSCCTTSBCCCHHHHHHH-------SSSCTTHHHHHTTTTTTSSCCEEETT
T ss_pred HHHHHHhCCCCCcCCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 3444444 45555555 55555533 77899999999999999999998654
No 144
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=40.61 E-value=15 Score=27.35 Aligned_cols=42 Identities=10% Similarity=0.290 Sum_probs=31.1
Q ss_pred hcccccc-cchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCC
Q psy16237 77 MKSRKQI-RHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANS 125 (133)
Q Consensus 77 MK~~k~l-~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d 125 (133)
++....+ +-.+|..+ |.++...+++++..|.+.|||.|..+.
T Consensus 28 ~~~g~~lPse~~La~~-------~~vSr~tvr~Al~~L~~~G~i~~~~g~ 70 (243)
T 2wv0_A 28 LQPDMPLPSEREYAEQ-------FGISRMTVRQALSNLVNEGLLYRLKGR 70 (243)
T ss_dssp SCTTCBCCCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred CCCcCCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCcEEEeCCC
Confidence 4444455 44555433 778999999999999999999997653
No 145
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=40.34 E-value=6.6 Score=26.71 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCCCCCceEec
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 132 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yv 132 (133)
+..+.+.-++.|..|-++|.|..-...+...+|.
T Consensus 69 lkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 102 (108)
T 3u5c_Z 69 LKIGGSLARIALRHLEKEGIIKPISKHSKQAIYT 102 (108)
T ss_dssp TCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEE
T ss_pred hhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 7788888999999999999999877777777885
No 146
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=40.33 E-value=19 Score=24.41 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHhhhhhccc
Q psy16237 102 SISMIKKCIESLIDKNYVE 120 (133)
Q Consensus 102 ~~~~iK~~IE~LIekeYl~ 120 (133)
|...|.+.|++||.+||.=
T Consensus 21 t~eqI~kQI~Yll~qGw~p 39 (109)
T 1rbl_M 21 SDRQIAAQIEYMIEQGFHP 39 (109)
T ss_dssp CHHHHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHHHHHCCCEE
Confidence 8999999999999999863
No 147
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=39.42 E-value=15 Score=27.77 Aligned_cols=37 Identities=5% Similarity=0.096 Sum_probs=27.0
Q ss_pred cCC-CCCCHHHHHHHHHHhhhhhccccC--CCC-CCceEec
Q psy16237 96 SKS-FAPSISMIKKCIESLIDKNYVERT--ANS-TDEYSYV 132 (133)
Q Consensus 96 l~~-F~p~~~~iK~~IE~LIekeYl~R~--~~d-~~~y~Yv 132 (133)
|.. ...+.+.+-..|+.|.++|||+|. ++| +..++++
T Consensus 180 La~~l~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~L 220 (250)
T 1p4x_A 180 LIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHM 220 (250)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEEC
T ss_pred HHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEE
Confidence 444 567888889999999999999994 334 3445443
No 148
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=39.32 E-value=13 Score=24.95 Aligned_cols=42 Identities=7% Similarity=0.112 Sum_probs=31.5
Q ss_pred hhcccccc-cchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 76 IMKSRKQI-RHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 76 IMK~~k~l-~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
.++....+ +-.+|..+ |.++...+++++..|...|+|.+..+
T Consensus 28 ~~~~G~~lPse~~La~~-------~~vSr~tvr~Al~~L~~~Gli~~~~g 70 (126)
T 3by6_A 28 VLSANDQLPSVRETALQ-------EKINPNTVAKAYKELEAQKVIRTIPG 70 (126)
T ss_dssp SSCTTCEECCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCcCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 34444455 55555433 67899999999999999999998765
No 149
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=39.12 E-value=30 Score=23.25 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=31.3
Q ss_pred hhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 72 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 72 aIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
.|...+.....++..+|. +. |..+.+.+.+.|..|.++|||.|..+
T Consensus 44 ~i~~~l~~~~~~~~~~la----~~---l~vs~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 44 LISDLIREVGEARQVDMA----AR---LGVSQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp HHHHHHHHHSCCCHHHHH----HH---HTSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred HHHHHHHhCCCcCHHHHH----HH---hCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 334444444445544433 22 55889999999999999999999754
No 150
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=38.81 E-value=3.3 Score=29.54 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCCCCCceEec
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTANSTDEYSYV 132 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Yv 132 (133)
|..+.+.-++.|+.|-++|-|..-...+...+|.
T Consensus 73 lkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYT 106 (143)
T 2xzm_8 73 LKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYS 106 (143)
T ss_dssp HCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEE
T ss_pred hcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEe
Confidence 6789999999999999999998876666778885
No 151
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=37.80 E-value=20 Score=27.06 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHhhhhhcccc--CCCC-CCceEec
Q psy16237 99 FAPSISMIKKCIESLIDKNYVER--TANS-TDEYSYV 132 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R--~~~d-~~~y~Yv 132 (133)
...+.+.+-..|+.|.++|||.| |+.| +..++|+
T Consensus 60 l~~~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~L 96 (250)
T 1p4x_A 60 LCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISI 96 (250)
T ss_dssp SSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEEC
T ss_pred HCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEE
Confidence 55777888899999999999988 3444 4556665
No 152
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=37.58 E-value=19 Score=24.32 Aligned_cols=26 Identities=4% Similarity=0.100 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
|.++..-+++++..|...|+|.+..+
T Consensus 38 ~gvSr~tVr~Al~~L~~~Gli~~~~g 63 (129)
T 2ek5_A 38 HRINPATARNGLTLLVEAGILYKKRG 63 (129)
T ss_dssp TTCCHHHHHHHHHHHHTTTSEEEETT
T ss_pred HCcCHHHHHHHHHHHHHCCcEEEecC
Confidence 78999999999999999999998765
No 153
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=37.40 E-value=15 Score=24.58 Aligned_cols=30 Identities=10% Similarity=0.116 Sum_probs=24.9
Q ss_pred hcCC-CCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 95 QSKS-FAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 95 ~l~~-F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
+|.. |.++..-+++++..|.+.|||.+.++
T Consensus 40 ~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~ 70 (126)
T 3ic7_A 40 EYASIVEVNANTVMRSYEYLQSQEVIYNKRG 70 (126)
T ss_dssp TTTTCC-CCSGGGHHHHHHHHTTTSEEEETT
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCcEEEEcC
Confidence 3555 88888999999999999999998765
No 154
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=37.20 E-value=22 Score=24.08 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHhhhhhcc
Q psy16237 102 SISMIKKCIESLIDKNYV 119 (133)
Q Consensus 102 ~~~~iK~~IE~LIekeYl 119 (133)
|...|.+.|++||.+||.
T Consensus 23 t~eqI~kQV~Yll~qGw~ 40 (110)
T 1svd_M 23 NAERIRAQIKYAIAQGWS 40 (110)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHCCCe
Confidence 899999999999999986
No 155
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=37.10 E-value=22 Score=24.39 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.1
Q ss_pred CCC--CHHHHHHHHHHhhhhhcc
Q psy16237 99 FAP--SISMIKKCIESLIDKNYV 119 (133)
Q Consensus 99 F~p--~~~~iK~~IE~LIekeYl 119 (133)
|.| |...|.++|++||.+||.
T Consensus 15 yLP~Lt~eqI~kQV~yll~qGw~ 37 (118)
T 3zxw_B 15 YLPPLSDAQIARQIQYAIDQGYH 37 (118)
T ss_dssp CSCCCCHHHHHHHHHHHHHHTCE
T ss_pred cCCCCCHHHHHHHHHHHHhCCCe
Confidence 544 788899999999999986
No 156
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=36.67 E-value=25 Score=20.87 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=33.0
Q ss_pred hhhhhhccc-ccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 72 AIVRIMKSR-KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 72 aIVRIMK~~-k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
.|..+++.. ..++-.||-.. +-.+.+.+-+.|..|-+.+||...
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~-------lglsr~tv~~~l~~L~~~G~I~~~ 58 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKK-------CQVPKKTLNQVLYRLKKEDRVSSP 58 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHH-------HCSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCcEecC
Confidence 356666654 45777776543 457899999999999999999874
No 157
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=36.40 E-value=60 Score=20.95 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=35.4
Q ss_pred ccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 81 KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 81 k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
..+.-.+|+.++.+... |.++...+=..+..|.+.|||++..
T Consensus 23 ~~~~g~~i~~ei~~~~~-~~is~GtlYp~L~rLe~~GlI~~~~ 64 (99)
T 2co5_A 23 SRLEKKRLRSEILKRFD-IDISDGVLYPLIDSLIDDKILREEE 64 (99)
T ss_dssp TEEEGGGHHHHHHHHHC-CBCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCcHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHCCCEEEee
Confidence 34555788888877755 7899999999999999999999865
No 158
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=35.49 E-value=17 Score=24.51 Aligned_cols=42 Identities=7% Similarity=0.176 Sum_probs=31.2
Q ss_pred hhcccccc-cchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 76 IMKSRKQI-RHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 76 IMK~~k~l-~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
.++.--.| +-.+|..+ |.++..-|++++..|-..|||.+...
T Consensus 31 ~l~pG~~LPser~La~~-------~gVSr~tVReAl~~L~~eGlv~~~~g 73 (134)
T 4ham_A 31 VLQEGEKILSIREFASR-------IGVNPNTVSKAYQELERQEVIITVKG 73 (134)
T ss_dssp SSCTTCEECCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCCCccHHHHHHH-------HCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 45555555 44454433 77999999999999999999998665
No 159
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=35.39 E-value=27 Score=22.65 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=29.9
Q ss_pred ccchHHHHHHHHhcCCC-CCCHHHHHHHHHHhhhhhccccCCCCCCce
Q psy16237 83 IRHNALIQEVLSQSKSF-APSISMIKKCIESLIDKNYVERTANSTDEY 129 (133)
Q Consensus 83 l~h~eL~~ev~~~l~~F-~p~~~~iK~~IE~LIekeYl~R~~~d~~~y 129 (133)
+++.||... + ..+.+.+-+.+..|-+.|+|+|... +..+
T Consensus 43 ~~~~eL~~~-------l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~ 82 (111)
T 3df8_A 43 QNFNDIRSS-------IPGISSTILSRRIKDLIDSGLVERRSG-QITT 82 (111)
T ss_dssp BCHHHHHHT-------STTCCHHHHHHHHHHHHHTTSEEEEES-SSEE
T ss_pred CCHHHHHHH-------ccCCCHHHHHHHHHHHHHCCCEEEeec-CcEE
Confidence 347777643 4 3788999999999999999999765 4443
No 160
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=35.32 E-value=31 Score=23.91 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=36.7
Q ss_pred HHHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCce
Q psy16237 68 YLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 129 (133)
Q Consensus 68 ~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y 129 (133)
.....|++.+. +..++..+|.. . +..+.+.+-..+..|.+.|+|.+..+.+..|
T Consensus 58 p~R~~IL~~L~-~~~~t~~eLa~----~---lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~ 111 (151)
T 3f6v_A 58 PTRRRLVQLLT-SGEQTVNNLAA----H---FPASRSAISQHLRVLTEAGLVTPRKDGRFRY 111 (151)
T ss_dssp HHHHHHHHHGG-GCCEEHHHHHT----T---SSSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHHHHH-hCCCCHHHHHH----H---HCcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 33445666665 45566554432 2 5688999999999999999998865444433
No 161
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=35.26 E-value=36 Score=24.09 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=34.0
Q ss_pred hhhhhccc-ccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhc-cccC
Q psy16237 73 IVRIMKSR-KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNY-VERT 122 (133)
Q Consensus 73 IVRIMK~~-k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeY-l~R~ 122 (133)
|.++++.. +.++..+|..+ |..+.+.|.+.|..|-+.|+ |.+.
T Consensus 26 Il~~L~~~~~~~s~~eLa~~-------l~vS~~Ti~rdi~~L~~~G~~I~~~ 70 (187)
T 1j5y_A 26 IVRILERSKEPVSGAQLAEE-------LSVSRQVIVQDIAYLRSLGYNIVAT 70 (187)
T ss_dssp HHHHHHHCSSCBCHHHHHHH-------HTSCHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHcCCCcCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 56666654 55888887765 45899999999999999999 8763
No 162
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=35.24 E-value=60 Score=27.35 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=44.3
Q ss_pred HHHHhHHHHHhhhhhhh-cc-----cccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 61 VDEDRKLYLQAAIVRIM-KS-----RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 61 v~~~R~~~I~AaIVRIM-K~-----~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+=...|.|+|+-++ .. +--++..+|+..+.+.|. .+...|..+|+.|++.+-+-.++
T Consensus 66 ~~~~~~~R~~a~~~~~l~~~~~~~Ght~~~~~~l~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~ 131 (574)
T 3e1s_A 66 GALDDPRRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVVHYTR---VTPGQARLAVETAVELGRLSEDD 131 (574)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTCCSCEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTSSEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCEeecHHHHHHHHHHHhC---CCHHHHHHHHHHHHhCCCEEEEe
Confidence 34444567888888888 32 334678899999988886 67888999999999998776644
No 163
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=34.88 E-value=27 Score=22.73 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=34.8
Q ss_pred HhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCce
Q psy16237 70 QAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 129 (133)
Q Consensus 70 ~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y 129 (133)
.-.|++.+. ...++..||... +..+.+.+-+.+..|.+.|+|.+..+.+..|
T Consensus 20 R~~Il~~L~-~~~~~~~eLa~~-------l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~ 71 (118)
T 3f6o_A 20 RRAVLGRLS-RGPATVSELAKP-------FDMALPSFMKHIHFLEDSGWIRTHKQGRVRT 71 (118)
T ss_dssp HHHHHHHHH-TCCEEHHHHHTT-------CCSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHHH-hCCCCHHHHHHH-------hCcCHHHHHHHHHHHHHCCCeEEEecCCEEE
Confidence 334455554 345555554322 6688999999999999999998865544444
No 164
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=33.96 E-value=60 Score=25.59 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=42.7
Q ss_pred HhHHHHHhhhhh-hhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCC
Q psy16237 64 DRKLYLQAAIVR-IMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANS 125 (133)
Q Consensus 64 ~R~~~I~AaIVR-IMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d 125 (133)
+|...|=.+||. ..+....++-.+|... +. +.++...|+.-+..|=+.|||.|-...
T Consensus 17 eR~~~IL~~i~~~yl~~~~pV~s~~La~~----~~-l~VS~aTIRrDL~~LE~~GlL~r~Hgs 74 (338)
T 1stz_A 17 DRQRKVLYCIVREYIENKKPVSSQRVLEV----SN-IEFSSATIRNDMKKLEYLGYIYQPHTS 74 (338)
T ss_dssp HHHHHHHHHHHHHHHHHCSCBCHHHHHHH----SC-CCSCHHHHHHHHHHHHHTTSEECCSSC
T ss_pred HHHHHHHHHHHHHHHHcCCCccHHHHHHH----hC-CCCCHHHHHHHHHHHHHCCCEEEccCc
Confidence 455544444444 5888888998888754 22 378999999999999999999996553
No 165
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=33.72 E-value=31 Score=23.71 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhhhccccCCC
Q psy16237 103 ISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 103 ~~~iK~~IE~LIekeYl~R~~~ 124 (133)
.+.+|.+|..|.++||+=+-..
T Consensus 77 ~sifKeAi~~Lqe~G~VfqK~~ 98 (120)
T 1wj5_A 77 QRVFKNALQLLQEKGLVFQRDS 98 (120)
T ss_dssp HHHHHHHHHHHHHHTSEECSSC
T ss_pred HHHHHHHHHHHHHCCEEEeccC
Confidence 5789999999999999866443
No 166
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=33.34 E-value=44 Score=21.15 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=22.2
Q ss_pred ccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhh
Q psy16237 81 KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLID 115 (133)
Q Consensus 81 k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIe 115 (133)
++|+-.||+..+.+... .+..+++..++.|++
T Consensus 2 ~~mtk~eLi~~ia~~~~---lsk~~~~~~v~~~~~ 33 (93)
T 3rhi_A 2 NAMNKTELIKNVAQNAE---ISQKEATVVVQTVVE 33 (93)
T ss_dssp -----CHHHHHHHHHHT---CCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHhC---cCHHHHHHHHHHHHH
Confidence 46888899999988764 578888888888876
No 167
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=29.12 E-value=47 Score=24.94 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=33.5
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
-.|.+.+.....++-.||... +..+.+.+-+.+..|.++|||+|...
T Consensus 155 ~~IL~~L~~~~~~s~~eLA~~-------lglsksTv~r~L~~Le~~GlV~r~~r 201 (244)
T 2wte_A 155 MKLLNVLYETKGTGITELAKM-------LDKSEKTLINKIAELKKFGILTQKGK 201 (244)
T ss_dssp HHHHHHHHHHTCBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHcCCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 344444445566776666544 23678889999999999999999743
No 168
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=28.77 E-value=23 Score=22.74 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=34.5
Q ss_pred HHHhhhhhhhccc------ccccchHHHHHHHHhcCCCCCCHHHHHHH-HHHhhhhhccccCCCCCCceEecC
Q psy16237 68 YLQAAIVRIMKSR------KQIRHNALIQEVLSQSKSFAPSISMIKKC-IESLIDKNYVERTANSTDEYSYVA 133 (133)
Q Consensus 68 ~I~AaIVRIMK~~------k~l~h~eL~~ev~~~l~~F~p~~~~iK~~-IE~LIekeYl~R~~~d~~~y~Yva 133 (133)
-+=|-||.-||.| .-++.+|++.++- ....+.....-- -|.|-...=|+-. | ..|.|-|
T Consensus 11 ~~lakiV~~mK~rh~~g~~~PltL~EILde~~----~~d~~~~~k~wL~~eaL~~npkI~~~--d-gkf~fkP 76 (81)
T 1d8j_A 11 GVLAKIVNYMKTRHQRGDTHPLTLDEILDETQ----HLDIGLKQKQWLMTEALVNNPKIEVI--D-GKYAFKP 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHTCCSCBCHHHHHHHHT----CSSCCHHHHHHHHTTHHHHCTTEEEC--S-SSEEECC
T ss_pred ehHHHHHHHHHHhhccCCCCCccHHHHHHHHh----ccCCCHHHHHHHHHHHhhcCCceEEe--C-CceeccC
Confidence 3447899999974 4488888877754 222344332221 3556655555544 2 2677754
No 169
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=28.51 E-value=35 Score=16.77 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHhhhh
Q psy16237 99 FAPSISMIKKCIESLIDK 116 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIek 116 (133)
|.|-...||..++.+.|+
T Consensus 3 ~~P~~e~ik~q~~~i~e~ 20 (26)
T 1oef_A 3 FEPLVEDMQRQWAGLVEK 20 (26)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 788999999999988774
No 170
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=28.39 E-value=37 Score=23.61 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHhhhhhcc
Q psy16237 102 SISMIKKCIESLIDKNYV 119 (133)
Q Consensus 102 ~~~~iK~~IE~LIekeYl 119 (133)
|...|.++|+.||.+||.
T Consensus 22 t~eqI~kQI~Yll~qGw~ 39 (128)
T 1wdd_S 22 TVEDLLKQIEYLLRSKWV 39 (128)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHCCCe
Confidence 899999999999999975
No 171
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=28.37 E-value=36 Score=24.01 Aligned_cols=18 Identities=6% Similarity=0.290 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHhhhhhcc
Q psy16237 102 SISMIKKCIESLIDKNYV 119 (133)
Q Consensus 102 ~~~~iK~~IE~LIekeYl 119 (133)
|...|.++|+.||.+||.
T Consensus 22 t~eqI~kQI~YlL~qGw~ 39 (140)
T 1gk8_I 22 TDEQIAAQVDYIVANGWI 39 (140)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHCCCE
Confidence 889999999999999975
No 172
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=28.16 E-value=37 Score=22.68 Aligned_cols=24 Identities=21% Similarity=0.614 Sum_probs=19.5
Q ss_pred HHHHhhh-------------hhccccCCCCC--CceEec
Q psy16237 109 CIESLID-------------KNYVERTANST--DEYSYV 132 (133)
Q Consensus 109 ~IE~LIe-------------keYl~R~~~d~--~~y~Yv 132 (133)
-++.|++ .+||++.+.|+ +.|+|+
T Consensus 39 gL~aLv~~P~~~~~~~~w~~g~YL~~~P~DPWg~~Y~Y~ 77 (110)
T 2kep_A 39 GLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNPYQYL 77 (110)
T ss_dssp HHHHHHSCCSSCCCSSCCCSTTTCCSCCCCSTTCCCEEE
T ss_pred HHHHHHhCcCCCcccccccCCCCccccCCCCCCCceEEe
Confidence 5788888 68999988776 678886
No 173
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=27.99 E-value=38 Score=23.88 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHhhhhhcc
Q psy16237 100 APSISMIKKCIESLIDKNYV 119 (133)
Q Consensus 100 ~p~~~~iK~~IE~LIekeYl 119 (133)
+.|...|.+.|+.||.+||.
T Consensus 13 ~ltdeqI~kQI~YlL~qGw~ 32 (139)
T 1bxn_I 13 ELTDEQITKQLEYCLNQGWA 32 (139)
T ss_dssp CCCHHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHHHHCCCe
Confidence 34889999999999999975
No 174
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=27.72 E-value=39 Score=17.36 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhh
Q psy16237 104 SMIKKCIESLIDK 116 (133)
Q Consensus 104 ~~iK~~IE~LIek 116 (133)
..||..|++|.++
T Consensus 9 tQIK~kvDsLLe~ 21 (28)
T 1txp_A 9 TQIKQKVDSLLEN 21 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5789999999875
No 175
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=27.57 E-value=99 Score=20.25 Aligned_cols=57 Identities=9% Similarity=0.152 Sum_probs=44.7
Q ss_pred hHHHHHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 65 RKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 65 R~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
....++.+|..++. .+.+.-.+|..++.+... +..+...+=..+..|-+.|||++..
T Consensus 11 ~~g~l~~~IL~lL~-~~p~~gyel~~~l~~~~~-~~i~~gtly~~L~~Le~~GlI~~~~ 67 (117)
T 3elk_A 11 LHGLITLYILKELV-KRPMHGYELQKSMFETTG-QALPQGSIYILLKTMKERGFVISES 67 (117)
T ss_dssp HHHHHHHHHHHHHH-HSCEEHHHHHHHHHHHHS-CCCCTTHHHHHHHHHHHHTSEEEEE
T ss_pred HhhHHHHHHHHHHH-cCCCCHHHHHHHHHHHhC-CCCCcchHHHHHHHHHHCCCEEEEe
Confidence 35667788888886 467888899999877654 4456689999999999999999853
No 176
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=27.43 E-value=1e+02 Score=20.54 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=37.6
Q ss_pred HHHHhhhhhhhcc------cccccchHHHHHHHHhcCC-CCC------CHHHHHHHHHHhhhhh
Q psy16237 67 LYLQAAIVRIMKS------RKQIRHNALIQEVLSQSKS-FAP------SISMIKKCIESLIDKN 117 (133)
Q Consensus 67 ~~I~AaIVRIMK~------~k~l~h~eL~~ev~~~l~~-F~p------~~~~iK~~IE~LIeke 117 (133)
..|-.+||+.|+. ..-+.-.||++.-+++... +.- ....+++.|..||.++
T Consensus 14 ~~i~n~lV~~ir~~E~~~~~~G~~~~eLv~WYLeq~e~~i~seeel~~e~~lv~kVI~rLI~~D 77 (114)
T 2klq_A 14 SRISNLIVLHLRKVEEEEDESALKRSELVNWYLKEIESEIDSEEELINKKRIIEKVIHRLTHYD 77 (114)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCBCHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhC
Confidence 3455666777764 4579999999999999765 433 2456889999999954
No 177
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=27.29 E-value=27 Score=25.58 Aligned_cols=26 Identities=4% Similarity=0.137 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
+..+.+.+-+.+..|.++|||+|..+
T Consensus 34 l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 34 LDQSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44788899999999999999999764
No 178
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=27.27 E-value=56 Score=23.65 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=31.3
Q ss_pred hhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 74 VRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 74 VRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
-.+......++-.+|-.. +..+.+.+-+.+..|.++||+.|..+
T Consensus 12 ~~l~~~~~~~~~~~lA~~-------l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 12 YELGTRHNKITNKEIAQL-------MQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp HHTTSSCSCCCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHhcCCCcCHHHHHHH-------HCCChhHHHHHHHHHHHCCCEEEecC
Confidence 344444555665555433 44788889999999999999999754
No 179
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=27.18 E-value=39 Score=23.76 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHhhhhhcc
Q psy16237 101 PSISMIKKCIESLIDKNYV 119 (133)
Q Consensus 101 p~~~~iK~~IE~LIekeYl 119 (133)
.|...|.+.|+.||.+||.
T Consensus 14 ltdeqI~kQI~Yll~qGw~ 32 (138)
T 1bwv_S 14 LTDEQIKKQIDYMISKKLA 32 (138)
T ss_dssp CCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHCCCe
Confidence 4889999999999999975
No 180
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=27.10 E-value=70 Score=25.08 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=37.3
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
..|.+.+..+..++-.||... .-.+.+.+.+.++.|++.++|+...
T Consensus 19 ~~il~~l~~~~~~sr~~la~~-------~~ls~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRL-------AQLAPASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHH-------TTCCHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHcCCcCHHHHHHH-------HCCCHHHHHHHHHHHHHCCcEEeec
Confidence 346777888889999888755 4588999999999999999998843
No 181
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=27.01 E-value=1.2e+02 Score=20.73 Aligned_cols=56 Identities=13% Similarity=0.347 Sum_probs=45.3
Q ss_pred HHHHhhhhhhhcccccccchHHHHHHHHh-cCC-CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 67 LYLQAAIVRIMKSRKQIRHNALIQEVLSQ-SKS-FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 67 ~~I~AaIVRIMK~~k~l~h~eL~~ev~~~-l~~-F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
..|.-+|..++.. +.+.=-+|.+++.+. ... |.|+...+=..+-.|...|||....
T Consensus 17 ~fl~l~IL~ll~~-~p~YGYeI~~~L~e~~~~~~~~is~gtlYp~L~rLe~~Gll~~~~ 74 (122)
T 1bm9_A 17 AFLKLYMITMTEQ-ERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIK 74 (122)
T ss_dssp HHHHHHHHHHHHT-TCCBSTTHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcc-CCchHHHHHHHHHHhhccCcccCCcccHHHHHHHHHHCCCeEEEE
Confidence 3567788888855 566666999999866 345 9999999999999999999998753
No 182
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=26.79 E-value=1.4e+02 Score=19.78 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=47.6
Q ss_pred HHHhHHHHHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccC
Q psy16237 62 DEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 62 ~~~R~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
.+-++..++.+|..++. +.+.--+|..++.+. . +.++...|=..+..|-+.|||.+.
T Consensus 15 ~~l~~g~l~~~IL~lL~--~p~~GYei~~~l~~~-~-~~is~gtlY~~L~rLe~~GlI~~~ 71 (123)
T 3ri2_A 15 LELRRGTLVMLVLSQLR--EPAYGYALVKSLADH-G-IPIEANTLYPLMRRLESQGLLASE 71 (123)
T ss_dssp HHHHHHHHHHHHHHHTT--SCEEHHHHHHHHHHT-T-CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCcHHHHHHHHHc--CCCCHHHHHHHHHHh-C-CCCCcchHHHHHHHHHHCCCEEEE
Confidence 44567788899999998 667777898887654 3 889999999999999999999985
No 183
>1t92_A General secretion pathway protein G; domain-swapping, zinc, pseudopilin, protein transport; 1.60A {Klebsiella pneumoniae} SCOP: d.24.1.3
Probab=26.76 E-value=19 Score=24.52 Aligned_cols=24 Identities=17% Similarity=0.563 Sum_probs=19.2
Q ss_pred HHHHhhhh-------------hccccCCCCC--CceEec
Q psy16237 109 CIESLIDK-------------NYVERTANST--DEYSYV 132 (133)
Q Consensus 109 ~IE~LIek-------------eYl~R~~~d~--~~y~Yv 132 (133)
-++.|+++ +||++.+.|+ +.|+|+
T Consensus 39 gL~aLv~~P~~~~~~~~w~~g~YL~~~P~DPWG~~Y~Y~ 77 (116)
T 1t92_A 39 GLQALVSAPSAEPHARNYPEGGYIRRLPQDPWGSDYQLL 77 (116)
T ss_dssp CGGGGTSCCSSSSCCSSCCTTTTSSSCCBCTTSCBCEEE
T ss_pred HHHHHHhCcCCCcccccccCCCCccccCCCCCCCceEEe
Confidence 57889985 8999987775 678886
No 184
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=25.82 E-value=14 Score=25.59 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+..+.+.+-+.|..|.++|||+|..
T Consensus 96 l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 96 AAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp CSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred HCCCHHHHHHHHHHHHHCcCEEecC
Confidence 4466677778999999999999964
No 185
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=25.31 E-value=54 Score=21.57 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=21.8
Q ss_pred HHHhhhhhhhccc-ccccchHHHHHHHHhcC
Q psy16237 68 YLQAAIVRIMKSR-KQIRHNALIQEVLSQSK 97 (133)
Q Consensus 68 ~I~AaIVRIMK~~-k~l~h~eL~~ev~~~l~ 97 (133)
.|+.| .-||+.+ +.|++.+|+++|.+.+.
T Consensus 15 miDvA-y~iL~~~~~~~~F~dL~~eV~~~~~ 44 (99)
T 2krc_A 15 LVEIA-HELFEEHKKPVPFQELLNEIASLLG 44 (99)
T ss_dssp HHHHH-HHHHHHHCSCEEHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHcCCcccHHHHHHHHHHHhC
Confidence 45555 4455554 78999999999998876
No 186
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=24.61 E-value=15 Score=27.39 Aligned_cols=30 Identities=23% Similarity=0.394 Sum_probs=6.0
Q ss_pred hcCC-CCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 95 QSKS-FAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 95 ~l~~-F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
+|.. |..+...+++++..|.+.|||.|..+
T Consensus 45 ~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 75 (247)
T 2ra5_A 45 ELAARLGLSRPTVRQAIQSLVDKGLLVRRRG 75 (247)
T ss_dssp -----------------------CEEEEEC-
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC
Confidence 4555 88999999999999999999998655
No 187
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=24.30 E-value=1.1e+02 Score=18.99 Aligned_cols=53 Identities=9% Similarity=0.044 Sum_probs=38.3
Q ss_pred HHHhhhhhhhcccccccchHHHHHHHHhcCCCCCCHH-HHHHHHHHhhhhhccccCCCCCC
Q psy16237 68 YLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSIS-MIKKCIESLIDKNYVERTANSTD 127 (133)
Q Consensus 68 ~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~-~iK~~IE~LIekeYl~R~~~d~~ 127 (133)
.++..|...+|.+..++=.+|- +.| -.+.. .+.+.+..|-+.|+|.|....+.
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA----~~L---git~~~aVr~hL~~Le~eGlV~~~~~gRP 64 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLA----KNI---GLTKARDINAVLIDMERQGDVYRQGTTPP 64 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHH----HHH---CGGGHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred hHHHHHHHHHHHcCCcCHHHHH----HHc---CCCcHHHHHHHHHHHHHCCCEEecCCCCC
Confidence 3455677888998887744443 334 37777 99999999999999987644444
No 188
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=24.29 E-value=71 Score=20.32 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=28.1
Q ss_pred ccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCC
Q psy16237 81 KQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANS 125 (133)
Q Consensus 81 k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d 125 (133)
..++..+|... +..+.+.+-+.|..|.+.||+.|..+.
T Consensus 44 ~~~s~~ela~~-------l~is~stvsr~l~~Le~~Glv~~~~~~ 81 (119)
T 2lkp_A 44 GPLPVTDLAEA-------IGMEQSAVSHQLRVLRNLGLVVGDRAG 81 (119)
T ss_dssp CCCCHHHHHHH-------HSSCHHHHHHHHHHHHHHCSEEEEEET
T ss_pred CCCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 45666665543 347888899999999999999886543
No 189
>2wa0_A Melanoma-associated antigen 4; immune system, multiple anomalous dispersion, cancer/testis 1.4, melanoma antigen family A 4, CT1.4, MAGE-41; 2.30A {Homo sapiens}
Probab=24.06 E-value=30 Score=26.33 Aligned_cols=53 Identities=11% Similarity=0.280 Sum_probs=32.2
Q ss_pred ccccccchHHHHHHHHhcCCC----CCCHHHHHHHH-HHhhhhhccccC---CCCCCceEec
Q psy16237 79 SRKQIRHNALIQEVLSQSKSF----APSISMIKKCI-ESLIDKNYVERT---ANSTDEYSYV 132 (133)
Q Consensus 79 ~~k~l~h~eL~~ev~~~l~~F----~p~~~~iK~~I-E~LIekeYl~R~---~~d~~~y~Yv 132 (133)
....++-++|+...-. +.-+ -|--.+.++-| +.|+.++||+|. .+|+..|.|.
T Consensus 136 ~gn~~~Ee~Lw~~L~~-lgv~~g~~h~ifG~~rklit~~~Vkq~YLe~~qv~~sdp~~~ef~ 196 (240)
T 2wa0_A 136 EGDSASEEEIWEELGV-MGVYDGREHTVYGEPRKLLTQDWVQENYLEYRQVPGSNPARYEFL 196 (240)
T ss_dssp HSSCEEHHHHHHHHHH-TTCCTTSCBTTTBCHHHHHHTHHHHTTSEEEECC------CCEEE
T ss_pred cCCCCCHHHHHHHHHh-cCCCCCCcCcCCCCHHHHHHHHHHHcCCeEEEeecCCCCCeEEEE
Confidence 3557888888765433 3211 12234578888 899999999995 3355688884
No 190
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=24.01 E-value=58 Score=25.95 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=37.5
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCC
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
..|.+.+.....++..||... +-.+.+.+.+.++.|++.++|+...
T Consensus 42 ~~il~~l~~~~~~sr~ela~~-------~gls~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKE-------SELAPASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHH-------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 346777888889999888765 3478899999999999999998753
No 191
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=23.69 E-value=41 Score=27.01 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=29.3
Q ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHhcCC-CC
Q psy16237 66 KLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FA 100 (133)
Q Consensus 66 ~~~I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~-F~ 100 (133)
.-..--|.+++|+....++|.+|++.+...|+. |.
T Consensus 296 ~GAmTyafi~aL~~~p~~tY~~Ll~~~r~~L~~kys 331 (350)
T 4f6o_A 296 TGAMSHAFIKVMTLQPQQSYLSLLQNMRKELAGKYS 331 (350)
T ss_dssp CCHHHHHHHHHHHHCCCCBHHHHHHHHHHHHTTTCS
T ss_pred eehhHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCC
Confidence 345556779999999999999999999999986 64
No 192
>3nw0_B Melanoma-associated antigen G1; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=23.55 E-value=32 Score=25.79 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=29.4
Q ss_pred hhcccccccchHHHHHHHHhcCCC----CCCHHHHHHHH-HHhhhhhccccC---CCCCCceEec
Q psy16237 76 IMKSRKQIRHNALIQEVLSQSKSF----APSISMIKKCI-ESLIDKNYVERT---ANSTDEYSYV 132 (133)
Q Consensus 76 IMK~~k~l~h~eL~~ev~~~l~~F----~p~~~~iK~~I-E~LIekeYl~R~---~~d~~~y~Yv 132 (133)
.|+ ..+++..+|+...-. +.-+ -|-..+.++-| +.|+..+||++. .+|+..|.|+
T Consensus 110 fm~-Gn~~~Ee~lw~~L~~-lgv~~g~~h~i~Ge~rklit~~lV~e~YLey~qvp~sdp~~yefl 172 (217)
T 3nw0_B 110 FMK-GNTLKETEAWDFLRR-LGVYPTKKHLIFGDPKKLITEDFVRQRYLEYRRIPHTDPVDYEFQ 172 (217)
T ss_dssp HHT-TTCBCHHHHHHHHHH-C-CCC----------HHHHHHHHHHHTCEECC---------CCEE
T ss_pred Hhc-CCCCCHHHHHHHHHh-cCCCCCCcCCcCCCHHHHHHHHHHHcCCeEEEeecCCCCCeEEEE
Confidence 354 567888888866543 2201 11123457777 899999999985 3456778875
No 193
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=23.47 E-value=1.1e+02 Score=18.96 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhh
Q psy16237 83 IRHNALIQEVLSQSKSFAPSISMIKKCIESLID 115 (133)
Q Consensus 83 l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIe 115 (133)
|+-.||+..+.+... .+..+++..++.|++
T Consensus 1 m~k~eli~~ia~~~~---ls~~~~~~~l~~~~~ 30 (90)
T 1mul_A 1 MNKTQLIDVIAEKAE---LSKTQAKAALESTLA 30 (90)
T ss_dssp CCHHHHHHHHHHHTT---CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 456788888887654 578888888888876
No 194
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=23.46 E-value=77 Score=20.80 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=33.6
Q ss_pred hhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCce
Q psy16237 72 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEY 129 (133)
Q Consensus 72 aIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y 129 (133)
.|++.+.. ..++..+|... + ..+.+.+-+.+..|-+.|++.+..+....|
T Consensus 50 ~IL~~L~~-~~~s~~ela~~----l---gis~stvs~~L~~Le~~Glv~~~~~gr~~~ 99 (122)
T 1r1t_A 50 RLLSLLAR-SELCVGDLAQA----I---GVSESAVSHQLRSLRNLRLVSYRKQGRHVY 99 (122)
T ss_dssp HHHHHHTT-CCBCHHHHHHH----H---TCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHc-CCCCHHHHHHH----H---CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 45555542 45666655543 3 367888999999999999999865443333
No 195
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=23.38 E-value=1e+02 Score=22.82 Aligned_cols=44 Identities=7% Similarity=0.237 Sum_probs=31.1
Q ss_pred hhhhc-ccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 74 VRIMK-SRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 74 VRIMK-~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
.+.+. ....++..||... +. .+.+.+-+-+..|.+.|||+|+++
T Consensus 29 L~~l~~~~~~~~~~eia~~----~g---l~kstv~r~l~tL~~~G~v~~~~~ 73 (260)
T 2o0y_A 29 LELFDAAHPTRSLKELVEG----TK---LPKTTVVRLVATMCARSVLTSRAD 73 (260)
T ss_dssp HTTCBTTBSSBCHHHHHHH----HC---CCHHHHHHHHHHHHHTTSEEECTT
T ss_pred HHHHhhCCCCcCHHHHHHH----HC---cCHHHHHHHHHHHHHCCCEEECCC
Confidence 34443 3456777666654 33 566777889999999999999865
No 196
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=23.28 E-value=52 Score=23.16 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHhhhhhccc
Q psy16237 101 PSISMIKKCIESLIDKNYVE 120 (133)
Q Consensus 101 p~~~~iK~~IE~LIekeYl~ 120 (133)
.|...|.+.|+.||.+||.-
T Consensus 14 ltd~qI~kQI~YlL~qGw~~ 33 (138)
T 4f0h_B 14 LTDEQIKKQIDYMISKKLAI 33 (138)
T ss_dssp CCHHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHhCCCEE
Confidence 48899999999999999863
No 197
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=23.16 E-value=91 Score=24.05 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=34.4
Q ss_pred hhhhhhcccccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhcccc
Q psy16237 72 AIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVER 121 (133)
Q Consensus 72 aIVRIMK~~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R 121 (133)
.|.++++....++-.+|..+ |..+...|.+.|..|-+.+|+..
T Consensus 9 ~Il~~L~~~~~~s~~eLa~~-------l~vS~~ti~r~l~~L~~~G~~i~ 51 (321)
T 1bia_A 9 KLIALLANGEFHSGEQLGET-------LGMSRAAINKHIQTLRDWGVDVF 51 (321)
T ss_dssp HHHHHHTTSSCBCHHHHHHH-------HTSCHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHcCCCcCHHHHHHH-------HCCCHHHHHHHHHHHHhCCCcEE
Confidence 45677777777887777654 56999999999999999999864
No 198
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=22.92 E-value=1.1e+02 Score=19.43 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=24.8
Q ss_pred cccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhh
Q psy16237 82 QIRHNALIQEVLSQSKSFAPSISMIKKCIESLID 115 (133)
Q Consensus 82 ~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIe 115 (133)
+|+-.||+..+.+... .+..+++..++.|++
T Consensus 2 ~m~k~eli~~ia~~~~---ls~~~~~~vl~~~~~ 32 (99)
T 1owf_A 2 ALTKAEMSEYLFDKLG---LSKRDAKELVELFFE 32 (99)
T ss_dssp CBCHHHHHHHHHHHHC---CCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 4778899999987764 578888888888876
No 199
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=22.84 E-value=1.4e+02 Score=19.40 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=39.2
Q ss_pred hhhhhcccccccchHHHHHHHHhcCC-CCCCHHHHHHHHHHhhhhhccccC
Q psy16237 73 IVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 73 IVRIMK~~k~l~h~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
|..++.. +.+.--+|...+.+.. . +.++...+=..+..|-+.|||++.
T Consensus 27 IL~lL~~-~~~~Gyei~~~l~~~~-~~~~is~gtLY~~L~rLe~~GlI~~~ 75 (115)
T 2dql_A 27 ILYVLLQ-GESYGTELIQQLETEH-PTYRLSDTVLYSAIKFLEDNRAITGY 75 (115)
T ss_dssp HHHHHTT-SCBCHHHHHHHHHHHC-TTEECCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHc-CCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 5666653 5677788888887654 5 789999999999999999999985
No 200
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=22.79 E-value=78 Score=20.56 Aligned_cols=35 Identities=9% Similarity=0.303 Sum_probs=25.3
Q ss_pred ccccchHHHHHHHHhcC--CCCCCHHHHHHHHHHhhh
Q psy16237 81 KQIRHNALIQEVLSQSK--SFAPSISMIKKCIESLID 115 (133)
Q Consensus 81 k~l~h~eL~~ev~~~l~--~F~p~~~~iK~~IE~LIe 115 (133)
.+|+-.||+..+.+.++ .-..+..+++..++.|++
T Consensus 7 ~~mtk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~ 43 (108)
T 2np2_A 7 PKVTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFE 43 (108)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHH
Confidence 35889999999884221 133578888888888876
No 201
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=22.38 E-value=38 Score=24.17 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHhhhhhccccCC
Q psy16237 100 APSISMIKKCIESLIDKNYVERTA 123 (133)
Q Consensus 100 ~p~~~~iK~~IE~LIekeYl~R~~ 123 (133)
+.+..+|+.+...|=-.+|..|++
T Consensus 57 Tv~a~DV~~a~~~lg~~~v~d~~~ 80 (154)
T 1f1e_A 57 TLMEEHLKALADVLMVEGVEDYDG 80 (154)
T ss_dssp EECHHHHHHHHHHHTCTTSTTCCS
T ss_pred cCCHHHHHHHHHhcccccCCcccc
Confidence 567888888888887777777654
No 202
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=22.35 E-value=1.1e+02 Score=18.89 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=22.4
Q ss_pred ccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhh
Q psy16237 83 IRHNALIQEVLSQSKSFAPSISMIKKCIESLID 115 (133)
Q Consensus 83 l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIe 115 (133)
|+-.||+..+.+... .+..+++..++.|++
T Consensus 1 mtk~eli~~ia~~~~---ls~~~~~~~l~~~~~ 30 (90)
T 1b8z_A 1 MNKKELIDRVAKKAG---AKKKDVKLILDTILE 30 (90)
T ss_dssp CCHHHHHHHHHHHHT---CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhC---cCHHHHHHHHHHHHH
Confidence 455788888887654 577888888888776
No 203
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=22.26 E-value=1e+02 Score=22.77 Aligned_cols=33 Identities=12% Similarity=0.006 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCCCCCceEe
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTANSTDEYSY 131 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~Y 131 (133)
|.-+....+..++.++..|.+=||+.....|-|
T Consensus 178 l~ws~~~a~e~L~~~e~~G~l~~D~~~eg~~y~ 210 (218)
T 3cuq_B 178 VGMSVLLAKERLLLAEKMGHLCRDDSVEGLRFY 210 (218)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEESSSCEEEE
T ss_pred hCCCHHHHHHHHHHHHHcCCEEEECCCCceEEe
Confidence 557788889999999999999999654344333
No 204
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=21.90 E-value=97 Score=21.11 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=40.5
Q ss_pred hhhhhhhcccccccchHHHHHHHHhcCC-CCCCHHHHHHHHHHhhhhhccccC
Q psy16237 71 AAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 71 AaIVRIMK~~k~l~h~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
..|..++.. +.+.-.+|...+.+.. . +.++...+=..+..|-+.|||++.
T Consensus 37 ~~IL~lL~~-~~~~Gyei~k~l~~~~-~~~~is~gtLYp~L~rLe~~GlI~~~ 87 (138)
T 2e1n_A 37 CYVLAVLRH-EDSYGTELIQHLETHW-PNYRLSDTVLYTALKFLEDEQIISGY 87 (138)
T ss_dssp HHHHHHHTT-SCEEHHHHHHHHHHHS-TTEECCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHc-CCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 446666654 5677778888887654 5 789999999999999999999985
No 205
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=21.71 E-value=1.1e+02 Score=19.08 Aligned_cols=30 Identities=7% Similarity=0.235 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhh
Q psy16237 83 IRHNALIQEVLSQSKSFAPSISMIKKCIESLID 115 (133)
Q Consensus 83 l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIe 115 (133)
|+-.||+..+.+... .+..+++..++.|++
T Consensus 1 M~k~eli~~ia~~~~---ls~~~~~~~l~~~~~ 30 (94)
T 1p71_A 1 MNKGELVDAVAEKAS---VTKKQADAVLTAALE 30 (94)
T ss_dssp CBHHHHHHHHHHHHT---CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 456788888887654 577888888888876
No 206
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=21.68 E-value=1.4e+02 Score=21.24 Aligned_cols=30 Identities=7% Similarity=0.123 Sum_probs=27.4
Q ss_pred cCC-CCCCHHHHHHHHHHhhhhhccccCCCC
Q psy16237 96 SKS-FAPSISMIKKCIESLIDKNYVERTANS 125 (133)
Q Consensus 96 l~~-F~p~~~~iK~~IE~LIekeYl~R~~~d 125 (133)
+.. |.-+....+..++.++..|.+=||+..
T Consensus 126 la~~~~ws~~~a~e~L~~~e~~G~l~~D~~~ 156 (169)
T 1u5t_B 126 NNSKSNWTLGILMEVLQNCVDEGDLLIDKQL 156 (169)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHHTSEEEEECS
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCEEEECCC
Confidence 777 999999999999999999999999654
No 207
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=21.58 E-value=47 Score=24.42 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=28.2
Q ss_pred cccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCC
Q psy16237 82 QIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANS 125 (133)
Q Consensus 82 ~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d 125 (133)
.++..||... +..+.+.+-+-+..|.+.|||+|++++
T Consensus 21 ~~s~~ela~~-------~gl~~stv~r~l~~L~~~G~v~~~~~~ 57 (241)
T 2xrn_A 21 GLSLAAIAQL-------VGLPRSTVQRIINALEEEFLVEALGPA 57 (241)
T ss_dssp CEEHHHHHHH-------TTSCHHHHHHHHHHHHTTTSEEECGGG
T ss_pred CCCHHHHHHH-------HCcCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 5666665543 346778888999999999999998653
No 208
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=21.53 E-value=1.1e+02 Score=18.96 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=21.8
Q ss_pred ccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhh
Q psy16237 83 IRHNALIQEVLSQSKSFAPSISMIKKCIESLID 115 (133)
Q Consensus 83 l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIe 115 (133)
|+-.||+..+.+... .+..+++..++.|++
T Consensus 1 m~k~eli~~ia~~~~---ls~~~~~~~l~~~~~ 30 (90)
T 2o97_B 1 MNKSQLIDKIAAGAD---ISKAAAGRALDAIIA 30 (90)
T ss_dssp CBHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 455788888876543 577888888888876
No 209
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=21.51 E-value=40 Score=24.61 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 99 FAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 99 F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
+..+.+.+-+.|..|.++||+.|..+
T Consensus 34 l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (226)
T 2qq9_A 34 LEQSGPTVSQTVARMERDGLVVVASD 59 (226)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44788889999999999999999753
No 210
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=20.90 E-value=1.2e+02 Score=22.44 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=30.7
Q ss_pred cccccchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCCCCCceE
Q psy16237 80 RKQIRHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTANSTDEYS 130 (133)
Q Consensus 80 ~k~l~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~d~~~y~ 130 (133)
...++..||... +. .+.+.+-+-+..|.+.|||+|++++ ..|.
T Consensus 19 ~~~lsl~eia~~----lg---l~ksT~~RlL~tL~~~G~v~~~~~~-~~Y~ 61 (260)
T 3r4k_A 19 RLEIGLSDLTRL----SG---MNKATVYRLMSELQEAGFVEQVEGA-RSYR 61 (260)
T ss_dssp BSEEEHHHHHHH----HC---SCHHHHHHHHHHHHHTTSEEECSSS-SEEE
T ss_pred CCCCCHHHHHHH----HC---cCHHHHHHHHHHHHHCCCEEEcCCC-CcEE
Confidence 456777666654 33 5666778899999999999998753 3453
No 211
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=20.84 E-value=88 Score=19.70 Aligned_cols=53 Identities=11% Similarity=0.180 Sum_probs=33.2
Q ss_pred HHhhhhhhhcccccccchHHHHHHHHhcCCC--CCCHHHHHHHHHHhhhhhccccC
Q psy16237 69 LQAAIVRIMKSRKQIRHNALIQEVLSQSKSF--APSISMIKKCIESLIDKNYVERT 122 (133)
Q Consensus 69 I~AaIVRIMK~~k~l~h~eL~~ev~~~l~~F--~p~~~~iK~~IE~LIekeYl~R~ 122 (133)
|-.||.. +|.++-.+..-+...+.+.-... ......++..+..|+++|-|.+-
T Consensus 16 I~eAI~~-Lker~GsS~~AI~KyI~~~y~~~~~~~~~~~lk~aLk~~v~~G~l~q~ 70 (88)
T 2rqp_A 16 LTEAIKA-CFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQV 70 (88)
T ss_dssp HHHHHHH-HHHHTCCCHHHHHHHHHHHCSTHHHHTTTTTHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHH-hccCCCcCHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHhcCcEEee
Confidence 3444333 57777777777666665542111 11345788999999999988774
No 212
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=20.73 E-value=46 Score=17.65 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=19.6
Q ss_pred hcccccccc-hHHHHHHHHhcCC-CCCCHHHHHHHHHHhhh
Q psy16237 77 MKSRKQIRH-NALIQEVLSQSKS-FAPSISMIKKCIESLID 115 (133)
Q Consensus 77 MK~~k~l~h-~eL~~ev~~~l~~-F~p~~~~iK~~IE~LIe 115 (133)
||.+-++.. .+|+..+-...+. ..+-...|.++|+..++
T Consensus 1 Mk~ritv~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~ 41 (45)
T 2cpg_A 1 MKKRLTITLSESVLENLEKMAREMGLSKSAMISVALENYKK 41 (45)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCceEEEecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 444433333 2444444433333 55666667777766554
No 213
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=20.48 E-value=33 Score=24.82 Aligned_cols=41 Identities=5% Similarity=0.165 Sum_probs=30.6
Q ss_pred hcccccc-cchHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 77 MKSRKQI-RHNALIQEVLSQSKSFAPSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 77 MK~~k~l-~h~eL~~ev~~~l~~F~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
++.--.+ +-.+|..+ |.++..-|++++..|...|+|++.++
T Consensus 25 l~pG~~LPsE~eLa~~-------~gVSR~tVReAL~~L~~eGlv~~~~g 66 (239)
T 1hw1_A 25 FPPGTILPAERELSEL-------IGVTRTTLREVLQRLARDGWLTIQHG 66 (239)
T ss_dssp SCTTSBCCCHHHHHHH-------HTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCCCCCCCHHHHHHH-------HCCCHHHHHHHHHHHHHCCcEEEecC
Confidence 3444445 44454433 77899999999999999999998765
No 214
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=20.45 E-value=49 Score=21.64 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHhhhhhccccCCC
Q psy16237 100 APSISMIKKCIESLIDKNYVERTAN 124 (133)
Q Consensus 100 ~p~~~~iK~~IE~LIekeYl~R~~~ 124 (133)
..+.+.+=++|+.|+.+||++-+++
T Consensus 42 ~~drstvsrnl~~L~r~GlVe~~~~ 66 (95)
T 1bja_A 42 DLGNAVVNSNIGVLIKKGLVEKSGD 66 (95)
T ss_dssp TSCHHHHHHHHHHHHTTTSEEEETT
T ss_pred cccHHHHHHHHHHHHHCCCeecCCC
Confidence 3677788889999999999993333
Done!