RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16237
         (133 letters)



>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 92

 Score =  104 bits (262), Expect = 3e-31
 Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 1/91 (1%)

Query: 44  GAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPS 102
            A Q E+  E + T   VD+DRK  ++AAIVRIMKSRK+++HN L+ EV  Q K+ F PS
Sbjct: 2   AAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPS 61

Query: 103 ISMIKKCIESLIDKNYVERTANSTDEYSYVA 133
             +IKK IE LI++ Y+ RT      Y+YVA
Sbjct: 62  PVVIKKRIEGLIEREYLARTPEDRKVYTYVA 92


>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score =  104 bits (261), Expect = 4e-31
 Identities = 46/89 (51%), Positives = 62/89 (69%), Gaps = 1/89 (1%)

Query: 46  VQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKS-FAPSIS 104
           ++ E  QE E T  +++EDRKL +QAAIVRIMK RK ++H  L+ EVL+Q  S F P + 
Sbjct: 2   MKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVP 61

Query: 105 MIKKCIESLIDKNYVERTANSTDEYSYVA 133
           +IKKCI+ LI+K Y+ER     D YSY+A
Sbjct: 62  VIKKCIDILIEKEYLERVDGEKDTYSYLA 90


>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 84

 Score =  102 bits (257), Expect = 1e-30
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 49  ETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHNALIQEVLSQSKSFAPSISMIKK 108
           ET +E   T   V +DR+  + AAIVRIMK RK + HN L+ E+ +Q K F      +KK
Sbjct: 1   ETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK-FPVKPGDLKK 59

Query: 109 CIESLIDKNYVERTANSTDEYSYVA 133
            IESLID++Y+ER  ++ ++Y YVA
Sbjct: 60  RIESLIDRDYMERDKDNPNQYHYVA 84


>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 276

 Score = 30.3 bits (68), Expect = 0.053
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 16  ISVKELTEDTEIRLNLGYNNKRTKLKIS 43
           +   EL  DT I+L LGY NK+ ++ I+
Sbjct: 248 VDEVELKPDTLIKLYLGYKNKKLRVNIN 275


>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 273

 Score = 30.3 bits (68), Expect = 0.058
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 19  KELTEDTEIRLNLGYNNKRTKLKISGAVQK 48
           KE+ +  +   N  + +K  ++KI+    K
Sbjct: 244 KEVEDGDKFIFNGEFKHKLFRIKINQIQMK 273


>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia
           coli [TaxId: 562]}
          Length = 431

 Score = 25.0 bits (54), Expect = 3.9
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 7/53 (13%)

Query: 34  NNKRTKLKISGAVQKETPQEIERTVSSVDEDRKLYLQAAIVRIMKSRKQIRHN 86
               T LK+S        +EI      + ++ K  +  A+  I       +  
Sbjct: 57  KTTVTALKVS-------AEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLP 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.127    0.333 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 430,410
Number of extensions: 17330
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 12
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.6 bits)