BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16238
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P14083|TKR_DROME Protein TKR OS=Drosophila melanogaster GN=Tkr PE=2 SV=2
Length = 1046
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 29/32 (90%)
Query: 5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
HYSLRWNNHQ+H+L AFD+LL+ +TLVDVTL
Sbjct: 114 HYSLRWNNHQNHILRAFDALLKTKTLVDVTLV 145
>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila
melanogaster GN=lola PE=1 SV=4
Length = 963
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
+ LRWNNHQS L++ FD+LL+NETLVD TLA
Sbjct: 6 QFCLRWNNHQSTLISVFDTLLENETLVDCTLA 37
>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila
melanogaster GN=lola PE=1 SV=1
Length = 787
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
+ LRWNNHQS L++ FD+LL+NETLVD TLA
Sbjct: 6 QFCLRWNNHQSTLISVFDTLLENETLVDCTLA 37
>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila
melanogaster GN=lola PE=1 SV=2
Length = 891
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
+ LRWNNHQS L++ FD+LL+NETLVD TLA
Sbjct: 6 QFCLRWNNHQSTLISVFDTLLENETLVDCTLA 37
>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila
melanogaster GN=lola PE=1 SV=1
Length = 970
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 27/31 (87%)
Query: 6 YSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
+ LRWNNHQS L++ FD+LL+NETLVD TLA
Sbjct: 7 FCLRWNNHQSTLISVFDTLLENETLVDCTLA 37
>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila
melanogaster GN=lola PE=1 SV=3
Length = 878
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
+ LRWNNHQS L++ FD+LL+NETLVD TLA
Sbjct: 6 QFCLRWNNHQSTLISVFDTLLENETLVDCTLA 37
>sp|P42282|TTKA_DROME Protein tramtrack, alpha isoform OS=Drosophila melanogaster
GN=ttk PE=1 SV=3
Length = 813
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 1 MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
M+S + LRWNNHQS+LL+ FD LL ET DVTLA
Sbjct: 3 MASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLA 38
>sp|P17789|TTKB_DROME Protein tramtrack, beta isoform OS=Drosophila melanogaster GN=ttk
PE=1 SV=2
Length = 643
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 1 MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
M+S + LRWNNHQS+LL+ FD LL ET DVTLA
Sbjct: 3 MASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLA 38
>sp|P42284|LOLA2_DROME Longitudinals lacking protein, isoforms H/M/V OS=Drosophila
melanogaster GN=lola PE=1 SV=2
Length = 549
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
+ LRWNNHQS L++ FD+LL+NETLVD TLA
Sbjct: 6 QFCLRWNNHQSTLISVFDTLLENETLVDCTLA 37
>sp|Q9W0K4|BAB2_DROME Protein bric-a-brac 2 OS=Drosophila melanogaster GN=bab2 PE=1 SV=2
Length = 1067
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
+ LRWNN+QS+L N FD LLQ+E+ VDVTL+
Sbjct: 197 QFCLRWNNYQSNLTNVFDELLQSESFVDVTLS 228
>sp|Q9W0K7|BAB1_DROME Protein bric-a-brac 1 OS=Drosophila melanogaster GN=bab1 PE=2 SV=2
Length = 977
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
+ LRWNN+Q++L FD LLQNE VDVTLA
Sbjct: 101 QFCLRWNNYQTNLTTIFDQLLQNECFVDVTLA 132
>sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4/5 OS=Drosophila
melanogaster GN=br PE=1 SV=2
Length = 727
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
H+ LRWNN+QS + +AF++L +E VDVTLA
Sbjct: 6 HFCLRWNNYQSSITSAFENLRDDEAFVDVTLA 37
>sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6 OS=Drosophila melanogaster
GN=br PE=1 SV=2
Length = 880
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
H+ LRWNN+QS + +AF++L +E VDVTLA
Sbjct: 6 HFCLRWNNYQSSITSAFENLRDDEAFVDVTLA 37
>sp|Q8IN81|FRU_DROME Sex determination protein fruitless OS=Drosophila melanogaster
GN=fru PE=1 SV=1
Length = 955
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 6 YSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
+ LRWNNH ++L SLLQ E L DVTLA
Sbjct: 106 FCLRWNNHPTNLTGVLTSLLQREALCDVTLA 136
>sp|Q24174|ABRU_DROME Protein abrupt OS=Drosophila melanogaster GN=ab PE=1 SV=2
Length = 904
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 6 YSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
Y+L+WN+ QS +L++F L E VDVTLA
Sbjct: 78 YALKWNDFQSSILSSFRHLRDEEDFVDVTLA 108
>sp|Q7KRI2|LOLAL_DROME Longitudinals lacking protein-like OS=Drosophila melanogaster
GN=lolal PE=1 SV=1
Length = 127
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 2 SSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQD--LSKC 54
S + L+WN+ Q++++ +F L ++ DVTLA G+ C A LS C
Sbjct: 4 SDQQFFLKWNDFQTNMVTSFRHLRDEKSFTDVTLA----CEGQTCKAHKMVLSAC 54
>sp|A3CX68|SYP_METMJ Proline--tRNA ligase OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=proS PE=3 SV=1
Length = 477
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 46 CGAQDLSKCPAGSPDAFIDGPEIPENLSTKKSGPCTAENNNKTSA 90
CG+Q+ ++ + DA I G +I +L GPC A TSA
Sbjct: 427 CGSQECAEKIEAAVDASIIGSDIRSDLIAVSDGPCVACGGEGTSA 471
>sp|Q86V87|F16B2_HUMAN Protein FAM160B2 OS=Homo sapiens GN=FAM160B2 PE=2 SV=2
Length = 743
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 36 ARPRRRSGEACGAQDL-SKCPAGSPDAFIDGPEIPENLSTKKSGPCTAENNNKTSAHNNN 94
ARP+ GE+CGAQ L S PA + + +DG NL T G C ++ + N
Sbjct: 211 ARPQL-DGESCGAQALNSHMPAETEE--LDGGTTESNLITSLLGLCQSKKSRVALKAQEN 267
Query: 95 LKLRESLTPNSSPT 108
L L S+ ++ T
Sbjct: 268 LLLLVSMASPAAAT 281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,251,431
Number of Sequences: 539616
Number of extensions: 1971908
Number of successful extensions: 19845
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 13495
Number of HSP's gapped (non-prelim): 5733
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)