RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16238
         (123 letters)



>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
          Length = 336

 Score = 27.2 bits (61), Expect = 2.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 17  LLNAFDSLLQNETLVDVTLA 36
           LL+  D LL  ET V V +A
Sbjct: 287 LLHGLDKLLAEETKVPVYIA 306


>gnl|CDD|218247 pfam04757, Pex2_Pex12, Pex2 / Pex12 amino terminal region.  This
          region is found at the N terminal of a number of known
          and predicted peroxins including Pex2, Pex10 and Pex12.
          This conserved region is usually associated with a C
          terminal ring finger (pfam00097) domain.
          Length = 215

 Score = 25.8 bits (57), Expect = 6.0
 Identities = 5/25 (20%), Positives = 8/25 (32%)

Query: 6  YSLRWNNHQSHLLNAFDSLLQNETL 30
           +    N+   L      L +  TL
Sbjct: 21 GARFLLNYFDELKLLLKLLYERLTL 45


>gnl|CDD|236020 PRK07449, PRK07449,
           2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
           carboxylate synthase; Validated.
          Length = 568

 Score = 25.9 bits (58), Expect = 6.5
 Identities = 5/31 (16%), Positives = 11/31 (35%), Gaps = 1/31 (3%)

Query: 8   LRWNNHQSHLLNAFDSLLQNETLVDVTLARP 38
             +       +  +D  L+N    +  L +P
Sbjct: 258 RNYAPLHPQPIPCYDLWLRNPKAAE-ELLQP 287


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.309    0.125    0.373 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,784,644
Number of extensions: 458243
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 6
Length of query: 123
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 38
Effective length of database: 7,167,512
Effective search space: 272365456
Effective search space used: 272365456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.3 bits)