RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16238
         (123 letters)



>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A
          {Homo sapiens} PDB: 3ohv_A
          Length = 125

 Score = 33.7 bits (78), Expect = 0.004
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 1  MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTL 35
          + SP Y      H +++L   +   + + L DVTL
Sbjct: 3  LGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTL 37


>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
          activator, DNA-binding, nucleus, phosphorylation,
          repressor; 2.50A {Mus musculus}
          Length = 138

 Score = 31.9 bits (73), Expect = 0.022
 Identities = 7/34 (20%), Positives = 18/34 (52%)

Query: 2  SSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTL 35
           S  ++   + H +++L + +   + + L DVT+
Sbjct: 8  ESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTV 41


>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
          domain,transcription factor, protein-PROT interaction;
          2.44A {Homo sapiens}
          Length = 124

 Score = 31.4 bits (72), Expect = 0.031
 Identities = 7/34 (20%), Positives = 18/34 (52%)

Query: 2  SSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTL 35
          S   ++   + H +++L + +   + + L DVT+
Sbjct: 1  SMSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTI 34


>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
          structural genomics consortium, kelch repeat, secreted,
          protein binding; 2.60A {Homo sapiens}
          Length = 279

 Score = 31.9 bits (73), Expect = 0.035
 Identities = 7/38 (18%), Positives = 12/38 (31%)

Query: 2  SSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPR 39
          S        ++H S L    +   +     D+TL    
Sbjct: 4  SMEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGG 41


>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
          struct genomics consortium, SGC, structural protein;
          2.40A {Homo sapiens}
          Length = 144

 Score = 31.1 bits (71), Expect = 0.038
 Identities = 7/30 (23%), Positives = 11/30 (36%)

Query: 6  YSLRWNNHQSHLLNAFDSLLQNETLVDVTL 35
           ++    H + LL A  S  +     D  L
Sbjct: 23 MAVSDPQHAARLLRALSSFREESRFCDAHL 52


>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional
          repression, transcription; 1.30A {Homo sapiens} SCOP:
          d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
          Length = 127

 Score = 31.0 bits (71), Expect = 0.044
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 3  SPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTL 35
          S    +++  H S +L   + L   + L DV +
Sbjct: 2  SADSQIQFTRHASDVLLNLNRLRSRDILTDVVI 34


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.9 bits (66), Expect = 0.15
 Identities = 6/15 (40%), Positives = 9/15 (60%), Gaps = 3/15 (20%)

Query: 96  KLRESL---TPNSSP 107
           KL+ SL     +S+P
Sbjct: 24  KLQASLKLYADDSAP 38


>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
          phosphoprotein, repressor, transcri transcription
          regulation; 2.10A {Homo sapiens}
          Length = 129

 Score = 29.2 bits (66), Expect = 0.18
 Identities = 5/34 (14%), Positives = 12/34 (35%)

Query: 2  SSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTL 35
          S+    +   N  + +L   +         DV++
Sbjct: 5  SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSV 38


>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain,
          POK, proto oncogene, transcription F transcription;
          2.00A {Homo sapiens} PDB: 2nn2_A
          Length = 120

 Score = 29.1 bits (66), Expect = 0.20
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 12 NHQSHLLNAFDSLLQNETLVDVTL 35
          +H S +L+  +       L DV +
Sbjct: 7  DHSSDILSGLNEQRTQGLLCDVVI 30


>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
          kelch repeat, neurodegeneration, phosphoprotein,
          polymorphism, UBL conjugation; 2.80A {Homo sapiens}
          PDB: 3hve_B
          Length = 256

 Score = 29.5 bits (67), Expect = 0.23
 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 1  MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTL 35
          M+    ++    H + LL A  S  +     D  L
Sbjct: 3  MAEG-SAVSDPQHAARLLRALSSFREESRFCDAHL 36


>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel
          related zinc finger protein 3, HKR3, ZBTB48, Z finger,
          oncogene; 1.74A {Homo sapiens}
          Length = 119

 Score = 28.3 bits (64), Expect = 0.35
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 7  SLRWNNHQSHLLNAFDSLLQNETLVDVTL 35
          S+ +  H   +L   +   +     D TL
Sbjct: 1  SMSFVQHSVRVLQELNKQREKGQYCDATL 29


>2vpk_A Myoneurin; transcription regulation, transcription,
          metal-binding, alternative splicing, zinc, nucleus, BTB
          domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
          Length = 116

 Score = 28.3 bits (64), Expect = 0.36
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 11 NNHQSHLLNAFDSLLQNETLVDVTL 35
          ++H  HLL   +   +   L D T+
Sbjct: 3  SHHCEHLLERLNKQREAGFLCDCTI 27


>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
          protein-protein interaction domain, transcriptional
          represso finger protein; 1.90A {Homo sapiens} SCOP:
          d.42.1.1 PDB: 1cs3_A
          Length = 121

 Score = 28.3 bits (64), Expect = 0.39
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 1  MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTL 35
          M       +  +H + LL   + +    TL DV +
Sbjct: 1  MGMIQL--QNPSHPTGLLCKANQMRLAGTLCDVVI 33


>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
          binding; 2.40A {Homo sapiens}
          Length = 145

 Score = 28.3 bits (64), Expect = 0.44
 Identities = 5/21 (23%), Positives = 7/21 (33%)

Query: 15 SHLLNAFDSLLQNETLVDVTL 35
            L +    L +N    D  L
Sbjct: 10 CRLADELGGLWENSRFTDCCL 30


>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
          containing 33, kaiso transcriptio ZNF-kaiso,
          ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
          3m4t_A 3m8v_A
          Length = 116

 Score = 28.0 bits (63), Expect = 0.44
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 2  SSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTL 35
          S    S     +   LLN+ +    +    DVT+
Sbjct: 3  SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTV 36


>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
          structural genomics, NPPSFA; 2.60A {Mus musculus}
          Length = 135

 Score = 27.6 bits (62), Expect = 0.83
 Identities = 5/25 (20%), Positives = 9/25 (36%)

Query: 11 NNHQSHLLNAFDSLLQNETLVDVTL 35
          + H   +L   +   +     D TL
Sbjct: 6  SGHSVRVLQELNKQREKGQYCDATL 30


>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN
           protein structure initiative; 2.30A {Vibrio
           parahaemolyticus}
          Length = 586

 Score = 27.9 bits (61), Expect = 0.92
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 5   HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFID 64
            Y L+  + +S      + +L N+TL DV      +R G     QD  + P  + +   D
Sbjct: 76  DYFLQVEDSRSSTFTVGEHILLNQTLSDVIHYFKSQRCGGVFDQQD-RQVPVLNANQTAD 134


>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A
          {Homo sapiens} PDB: 3m52_A
          Length = 119

 Score = 26.8 bits (60), Expect = 1.3
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 12 NHQSHLLNAFDSLLQNETLVDVTL 35
           H  H+L   +   Q   L D T 
Sbjct: 9  QHSQHVLEQLNQQRQLGLLCDCTF 32


>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
          sapiens}
          Length = 109

 Score = 25.2 bits (56), Expect = 3.9
 Identities = 5/13 (38%), Positives = 7/13 (53%)

Query: 23 SLLQNETLVDVTL 35
          S+  NE + DV  
Sbjct: 1  SMFNNELMADVHF 13


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.8 bits (56), Expect = 4.6
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 18/65 (27%)

Query: 13  HQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCP-----AGSPDAFIDGPE 67
           H   L+ A D + +     D+       ++  +  A+D+ + P      GS D  +    
Sbjct: 428 HSHLLVPASDLINK-----DLV------KNNVSFNAKDI-QIPVYDTFDGS-DLRVLSGS 474

Query: 68  IPENL 72
           I E +
Sbjct: 475 ISERI 479


>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
           conjugation pathway, protein binding, ligase; 2.62A
           {Homo sapiens} PDB: 3hu6_A
          Length = 312

 Score = 24.9 bits (54), Expect = 8.3
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 13  HQSHLLNAFDSLLQNETLVDVTL 35
            +  L +    L +N    D  L
Sbjct: 157 PECRLADELGGLWENSRFTDCCL 179


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.309    0.125    0.373 

Gapped
Lambda     K      H
   0.267   0.0809    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,700,560
Number of extensions: 82051
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 21
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.3 bits)