RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16238
         (123 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 38.9 bits (90), Expect = 2e-05
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 8  LRWNNHQSHLLNAFDSLLQNETLVDVTL 35
          +++  H S +L   + L   + L DV +
Sbjct: 3  IQFTRHASDVLLNLNRLRSRDILTDVVI 30


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
          protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 35.8 bits (82), Expect = 3e-04
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 6  YSLRWNNHQSHLLNAFDSLLQNETLVDVTL 35
            L+  +H + LL   + +    TL DV +
Sbjct: 4  IQLQNPSHPTGLLCKANQMRLAGTLCDVVI 33


>d1pc6a_ d.262.1.1 (A:) NinB {Bacteriophage lambda [TaxId: 10710]}
          Length = 141

 Score = 24.4 bits (53), Expect = 4.0
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 1  MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRS 42
          M    + +R   HQ + ++A   +L + T   V   + R RS
Sbjct: 1  MKKLTFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRS 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.125    0.373 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 416,944
Number of extensions: 15539
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 4
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.1 bits)