BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1624
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QJ4|A Chain A, A Mechanistic Basis For Converting A Receptor Tyrosine
Kinase Agonist To An Antagonist
pdb|2QJ4|B Chain B, A Mechanistic Basis For Converting A Receptor Tyrosine
Kinase Agonist To An Antagonist
Length = 184
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 97 NRHYVFERHARKKLKL--PAADVKEIMASNRTDCEDKCLNE--FTFVCRSASYDSVAKTC 152
N + F++ A+ L P +K ++ +C ++C+ FTF C++ +D K C
Sbjct: 12 NTLHEFKKSAKTTLTKEDPLLKIKTKKVNSADECANRCIRNRGFTFTCKAFVFDKSRKRC 71
Query: 153 ------SLSRFTRRSHPEMLEDDPNADYLENTCLNSERRCDGPVIFVK 194
S+S ++ + N DY+ N + G V K
Sbjct: 72 YWYPFNSMSSGVKKGFGHEFDLYENKDYIRNCIIGKGGSYKGTVSITK 119
>pdb|4IUA|A Chain A, Crystal Structure Of The Nk2 Fragment (31-290) Of The
Mouse Hepatocyte Growth Factor/scatter Factor
pdb|4IUA|B Chain B, Crystal Structure Of The Nk2 Fragment (31-290) Of The
Mouse Hepatocyte Growth Factor/scatter Factor
pdb|4IUA|C Chain C, Crystal Structure Of The Nk2 Fragment (31-290) Of The
Mouse Hepatocyte Growth Factor/scatter Factor
pdb|4IUA|D Chain D, Crystal Structure Of The Nk2 Fragment (31-290) Of The
Mouse Hepatocyte Growth Factor/scatter Factor
pdb|4IUA|E Chain E, Crystal Structure Of The Nk2 Fragment (31-290) Of The
Mouse Hepatocyte Growth Factor/scatter Factor
pdb|4IUA|F Chain F, Crystal Structure Of The Nk2 Fragment (31-290) Of The
Mouse Hepatocyte Growth Factor/scatter Factor
pdb|4IUA|G Chain G, Crystal Structure Of The Nk2 Fragment (31-290) Of The
Mouse Hepatocyte Growth Factor/scatter Factor
pdb|4IUA|H Chain H, Crystal Structure Of The Nk2 Fragment (31-290) Of The
Mouse Hepatocyte Growth Factor/scatter Factor
Length = 262
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 97 NRHYVFERHARKKLKL--PAADVKEIMASNRTDCEDKCLNE--FTFVCRSASYDSVAKTC 152
N + F++ A+ L P +K ++ +C ++C+ FTF C++ +D K C
Sbjct: 10 NTLHEFKKSAKTTLTKEDPLLKIKTKKVNSADECANRCIRNRGFTFTCKAFVFDKSRKRC 69
Query: 153 ------SLSRFTRRSHPEMLEDDPNADYLENTCLNSERRCDGPVIFVK 194
S+S ++ + N DY+ N + G V K
Sbjct: 70 YWYPFNSMSSGVKKGFGHEFDLYENKDYIRNCIIGKGGSYKGTVSITK 117
>pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
pdb|2A8N|B Chain B, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
Length = 144
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 205 EVDIYANLSLLECQAQCLGAEKFKGTDLYLT 235
+V +A ++++ + LG E+ G DLY+T
Sbjct: 49 DVTAHAEIAVIRMACEALGQERLPGADLYVT 79
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 320 RIVYDPD----YDYYENLMSKITFPF 341
R++Y D Y YYE L K+ FPF
Sbjct: 689 RVIYGEDIFVGYRYYEKLQRKVAFPF 714
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 320 RIVYDPD----YDYYENLMSKITFPF 341
R++Y D Y YYE L K+ FPF
Sbjct: 689 RVIYGEDIFVGYRYYEKLQRKVAFPF 714
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,588,397
Number of Sequences: 62578
Number of extensions: 429476
Number of successful extensions: 772
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 28
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)