BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1624
         (346 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q10125|YSM5_CAEEL Uncharacterized protein F52C9.5 OS=Caenorhabditis elegans
           GN=F52C9.5 PE=4 SV=3
          Length = 618

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 27/176 (15%)

Query: 11  LEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIG 70
           + +C + C+ ++   + L   C SFDF   +             STC  T E A P G G
Sbjct: 283 VAECAKACIENKINGVAL--KCKSFDFLSST-------------STCAFTSEAAVPVGNG 327

Query: 71  NLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCED 130
            L    ++ ++ ++C+S + +E  CP+    F RH +  L   A  V +  + +   C D
Sbjct: 328 QLKQREDASYHEKICVSKSFVE-SCPS--TFFSRHPQMILVGFAESVSD--SPSFEHCFD 382

Query: 131 KCLNE---FTFVCRSASY--DSVAKTCSLSRFTRRSHPEML--EDDPNADYLENTC 179
            CLN    F F C S  Y  +     C L+   R +  E+   E+    DY E  C
Sbjct: 383 TCLNSYQLFGFNCTSGMYYFEENQLNCILNSENRNTQRELFTEENTDIVDYFEVEC 438


>sp|P20918|PLMN_MOUSE Plasminogen OS=Mus musculus GN=Plg PE=1 SV=3
          Length = 812

 Score = 32.3 bits (72), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 118 KEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSL 154
           K++ A   +DC  KC  E  FVCRS  Y S  + C +
Sbjct: 39  KQLAAGGVSDCLAKCEGETDFVCRSFQYHSKEQQCVI 75


>sp|B0KFS6|MURG_PSEPG UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase OS=Pseudomonas putida (strain GB-1) GN=murG
           PE=3 SV=1
          Length = 359

 Score = 32.0 bits (71), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 15/119 (12%)

Query: 172 ADYLENTCLNSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLGA--EKFKG 229
             Y+      + R C  P++ + E+N R G        AN  L+   A+   A    F+ 
Sbjct: 103 GGYVTGPGGVAARLCGVPLV-IHEQNARAG-------TANRLLVPLSARVCEAFPNTFEA 154

Query: 230 TDLYLTKGNDFPENSVTSHLFADGRRPDTAFQRYRNSKLGGEFHSEITGRSLSECLDEC 288
           +D   T GN      V   LF D +R   A +R R   LGG   +E   + L + L E 
Sbjct: 155 SDKRRTTGNP-----VRPELFMDAQRAPLAERRARLLVLGGSLGAEPLNKLLPKALSEV 208


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.136    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,432,881
Number of Sequences: 539616
Number of extensions: 5342427
Number of successful extensions: 9649
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9626
Number of HSP's gapped (non-prelim): 26
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)