Query psy1624
Match_columns 346
No_of_seqs 171 out of 207
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 16:23:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01099 PAN_AP_HGF Subfamily o 99.6 2.2E-15 4.7E-20 118.2 7.5 79 98-178 2-80 (80)
2 PF00024 PAN_1: PAN domain Thi 99.3 1.9E-12 4E-17 99.2 4.6 77 100-179 2-79 (79)
3 cd01099 PAN_AP_HGF Subfamily o 99.1 6.1E-11 1.3E-15 93.0 5.3 77 257-333 3-80 (80)
4 PF00024 PAN_1: PAN domain Thi 98.9 1.3E-09 2.9E-14 83.3 3.2 75 259-334 3-79 (79)
5 smart00473 PAN_AP divergent su 98.6 1.1E-07 2.3E-12 72.2 6.8 74 101-178 5-78 (78)
6 smart00473 PAN_AP divergent su 98.1 7.6E-06 1.6E-10 61.9 5.3 75 258-333 4-78 (78)
7 cd01100 APPLE_Factor_XI_like S 92.9 0.17 3.6E-06 38.5 4.2 53 102-158 6-58 (73)
8 PF14295 PAN_4: PAN domain; PD 92.5 0.099 2.1E-06 36.2 2.3 37 7-59 14-50 (51)
9 cd01100 APPLE_Factor_XI_like S 92.1 0.21 4.6E-06 37.9 3.9 35 8-63 24-58 (73)
10 smart00223 APPLE APPLE domain. 92.1 0.25 5.5E-06 38.6 4.4 35 7-62 20-57 (79)
11 PF14295 PAN_4: PAN domain; PD 89.5 0.28 6.2E-06 33.9 2.2 33 120-154 13-50 (51)
12 smart00223 APPLE APPLE domain. 85.7 2.2 4.7E-05 33.4 5.4 49 105-157 6-57 (79)
13 cd00129 PAN_APPLE PAN/APPLE-li 85.1 2 4.2E-05 33.7 4.9 38 122-159 24-62 (80)
14 PF08276 PAN_2: PAN-like domai 81.8 3.9 8.4E-05 30.5 5.2 54 101-158 6-62 (66)
15 PF08276 PAN_2: PAN-like domai 80.7 3.5 7.6E-05 30.7 4.6 51 258-310 5-58 (66)
16 cd01098 PAN_AP_plant Plant PAN 79.6 4.2 9.2E-05 30.7 4.9 54 100-158 12-65 (84)
17 cd01098 PAN_AP_plant Plant PAN 73.5 4.7 0.0001 30.4 3.6 51 258-311 12-62 (84)
18 cd00129 PAN_APPLE PAN/APPLE-li 70.5 5.4 0.00012 31.2 3.3 37 9-63 25-61 (80)
19 PF08277 PAN_3: PAN-like domai 57.2 21 0.00046 26.3 4.3 41 273-317 14-54 (71)
20 PF08277 PAN_3: PAN-like domai 51.6 26 0.00056 25.8 4.0 38 119-160 16-53 (71)
21 smart00765 MANEC The MANEC dom 28.0 93 0.002 25.2 3.9 43 3-62 32-74 (93)
22 PRK13669 hypothetical protein; 25.9 97 0.0021 24.3 3.5 45 72-131 23-67 (78)
No 1
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.60 E-value=2.2e-15 Score=118.25 Aligned_cols=79 Identities=35% Similarity=0.480 Sum_probs=72.2
Q ss_pred CceeEEEecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccCcccCCCCcccCCCcceecc
Q psy1624 98 RHYVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLEN 177 (346)
Q Consensus 98 r~~~Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~dr~t~p~~f~~~~~~dYfEN 177 (346)
..|.|+++++++|+| ++..++.+.|+++|+.+|+.+.+|.|||++|++.+++|+||++++.+.+..++.++++|||||
T Consensus 2 ~~~~f~~~~~~~l~~--~~~~~~~~~s~~~C~~~C~~~~~f~CrSf~y~~~~~~C~L~~~~~~~~~~~~~~~~~~dyyE~ 79 (80)
T cd01099 2 NDFKFVLVLNKILVS--EVKTEITVASLEECLRKCLEETEFTCRSFNYNYKSKECILSDEDRMSSGVKLLYDSNVDYYEN 79 (80)
T ss_pred CcccEEEecceeecc--eeeEEEecCCHHHHHHHhCCCCCceEeEEEEEcCCCEEEEeCCCccccccccccccCceeeec
Confidence 358899999999998 678888889999999999999899999999999999999999999988877777779999998
Q ss_pred c
Q psy1624 178 T 178 (346)
Q Consensus 178 ~ 178 (346)
.
T Consensus 80 ~ 80 (80)
T cd01099 80 K 80 (80)
T ss_pred C
Confidence 4
No 2
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=99.31 E-value=1.9e-12 Score=99.21 Aligned_cols=77 Identities=40% Similarity=0.689 Sum_probs=66.8
Q ss_pred eeEEEecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccCcccCCCCccc-CCCcceeccc
Q psy1624 100 YVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLED-DPNADYLENT 178 (346)
Q Consensus 100 ~~Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~dr~t~p~~f~~-~~~~dYfEN~ 178 (346)
|.|++++|+.|.| +.++++.+.++++|+.+|+.+.. .|+|++|+...+.|.|++.++.+.+..+.. .+.++|||+.
T Consensus 2 ~~f~~~~~~~l~~--~~~~~~~v~s~~~C~~~C~~~~~-~C~s~~y~~~~~~C~L~~~~~~~~~~~~~~~~~~~~~ye~~ 78 (79)
T PF00024_consen 2 WAFERIPGYRLSG--HSIKEINVPSLEECAQLCLNEPR-RCKSFNYDPSSKTCYLSSSDRSSLPPRLTPSSPNVDYYEKS 78 (79)
T ss_dssp -TEEEEEEEEEES--CEEEEEEESSHHHHHHHHHHSTT--ESEEEEETTTTEEEEECSSSSSESTEEEEEEEEEEEEEEG
T ss_pred CCeEEECCEEEeC--CcceEEcCCCHHHHHhhcCcCcc-cCCeEEEECCCCEEEEcCCCCCcccceeEeccCcEEEEEec
Confidence 7899999999999 56677788999999999999874 699999999999999999999995555555 6799999998
Q ss_pred c
Q psy1624 179 C 179 (346)
Q Consensus 179 C 179 (346)
|
T Consensus 79 C 79 (79)
T PF00024_consen 79 C 79 (79)
T ss_dssp C
T ss_pred C
Confidence 8
No 3
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.14 E-value=6.1e-11 Score=92.97 Aligned_cols=77 Identities=40% Similarity=0.666 Sum_probs=68.5
Q ss_pred CcccceeeccccCCccceeecCCChhHHHHHHhccCceeecceeeeeecceEEeeecccCC-CceeecCCCchhhhhc
Q psy1624 257 DTAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRD-GHRIVYDPDYDYYENL 333 (346)
Q Consensus 257 ~~~f~r~~~~~l~~~~~~~~~~~sl~~C~~~C~~~~~~~Crs~~y~~~~~~c~L~~~~~~~-~~~~~~~~~~dy~~~~ 333 (346)
+..|.+.++..|.|.+..++...++++|+.+|++...|.|||++|..+.+.|.|++.++.. +...++++.+|||||.
T Consensus 3 ~~~f~~~~~~~l~~~~~~~~~~~s~~~C~~~C~~~~~f~CrSf~y~~~~~~C~L~~~~~~~~~~~~~~~~~~dyyE~~ 80 (80)
T cd01099 3 DFKFVLVLNKILVSEVKTEITVASLEECLRKCLEETEFTCRSFNYNYKSKECILSDEDRMSSGVKLLYDSNVDYYENK 80 (80)
T ss_pred cccEEEecceeecceeeEEEecCCHHHHHHHhCCCCCceEeEEEEEcCCCEEEEeCCCccccccccccccCceeeecC
Confidence 3567788999999988888888999999999999888999999999999999999999954 5678888889999973
No 4
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=98.87 E-value=1.3e-09 Score=83.27 Aligned_cols=75 Identities=33% Similarity=0.585 Sum_probs=66.5
Q ss_pred ccceeeccccCCccceeecCCChhHHHHHHhccCceeecceeeeeecceEEeeecccCC-Cceeec-CCCchhhhhcC
Q psy1624 259 AFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRD-GHRIVY-DPDYDYYENLM 334 (346)
Q Consensus 259 ~f~r~~~~~l~~~~~~~~~~~sl~~C~~~C~~~~~~~Crs~~y~~~~~~c~L~~~~~~~-~~~~~~-~~~~dy~~~~c 334 (346)
.|+++.|..|.+.+..++...++.+|..+|+++.. .|+|++|....+.|.|+..++.. +..+.. ++.++|||+.|
T Consensus 3 ~f~~~~~~~l~~~~~~~~~v~s~~~C~~~C~~~~~-~C~s~~y~~~~~~C~L~~~~~~~~~~~~~~~~~~~~~ye~~C 79 (79)
T PF00024_consen 3 AFERIPGYRLSGHSIKEINVPSLEECAQLCLNEPR-RCKSFNYDPSSKTCYLSSSDRSSLPPRLTPSSPNVDYYEKSC 79 (79)
T ss_dssp TEEEEEEEEEESCEEEEEEESSHHHHHHHHHHSTT--ESEEEEETTTTEEEEECSSSSSESTEEEEEEEEEEEEEEGC
T ss_pred CeEEECCEEEeCCcceEEcCCCHHHHHhhcCcCcc-cCCeEEEECCCCEEEEcCCCCCcccceeEeccCcEEEEEecC
Confidence 79999999999988888844499999999999985 69999999999999999888888 667776 77899999987
No 5
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.62 E-value=1.1e-07 Score=72.20 Aligned_cols=74 Identities=27% Similarity=0.370 Sum_probs=59.6
Q ss_pred eEEEecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccCcccCCCCcccCCCcceeccc
Q psy1624 101 VFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYLENT 178 (346)
Q Consensus 101 ~Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~dr~t~p~~f~~~~~~dYfEN~ 178 (346)
.|.++++..|.+. +.....+.++++|+.+|+.+ ++.|+|++|+...+.|+|+..+..+.+. .....+++|||+.
T Consensus 5 ~f~~~~~~~l~~~--~~~~~~~~s~~~C~~~C~~~-~~~C~s~~y~~~~~~C~l~~~~~~~~~~-~~~~~~~~~y~~~ 78 (78)
T smart00473 5 CFVRLPNTKLPGF--SRIVISVASLEECASKCLNS-NCSCRSFTYNNGTKGCLLWSESSLGDAR-LFPSGGVDLYEKI 78 (78)
T ss_pred eeEEecCccCCCC--cceeEcCCCHHHHHHHhCCC-CCceEEEEEcCCCCEEEEeeCCccccce-ecccCCceeEEeC
Confidence 5999999999763 44446789999999999995 5799999999888999999955555554 4456688999873
No 6
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.05 E-value=7.6e-06 Score=61.90 Aligned_cols=75 Identities=31% Similarity=0.465 Sum_probs=56.8
Q ss_pred cccceeeccccCCccceeecCCChhHHHHHHhccCceeecceeeeeecceEEeeecccCCCceeecCCCchhhhhc
Q psy1624 258 TAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHRIVYDPDYDYYENL 333 (346)
Q Consensus 258 ~~f~r~~~~~l~~~~~~~~~~~sl~~C~~~C~~~~~~~Crs~~y~~~~~~c~L~~~~~~~~~~~~~~~~~dy~~~~ 333 (346)
..|.++++..|.+.....+...++++|..+|+++ .+.|++++|....+.|.|+..+......+..+..+|||++.
T Consensus 4 ~~f~~~~~~~l~~~~~~~~~~~s~~~C~~~C~~~-~~~C~s~~y~~~~~~C~l~~~~~~~~~~~~~~~~~~~y~~~ 78 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIVISVASLEECASKCLNS-NCSCRSFTYNNGTKGCLLWSESSLGDARLFPSGGVDLYEKI 78 (78)
T ss_pred ceeEEecCccCCCCcceeEcCCCHHHHHHHhCCC-CCceEEEEEcCCCCEEEEeeCCccccceecccCCceeEEeC
Confidence 4688889999886555456677999999999994 37999999998889999977223233344555568999863
No 7
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=92.90 E-value=0.17 Score=38.49 Aligned_cols=53 Identities=21% Similarity=0.471 Sum_probs=42.7
Q ss_pred EEEecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccC
Q psy1624 102 FERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFT 158 (346)
Q Consensus 102 Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~d 158 (346)
|..+++..+.|. +.....+.+.++|..+|+... .|..+.|+...+.|.|-...
T Consensus 6 ~~~~~~~~~~g~--d~~~~~~~s~~~Cq~~C~~~~--~C~afT~~~~~~~C~lk~~~ 58 (73)
T cd01100 6 FRQGSNVDFRGG--DLSTVFASSAEQCQAACTADP--GCLAFTYNTKSKKCFLKSSE 58 (73)
T ss_pred ccccCCCccccC--CcceeecCCHHHHHHHcCCCC--CceEEEEECCCCeEEcccCC
Confidence 555567777774 444556889999999999975 89999999999999988664
No 8
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=92.48 E-value=0.099 Score=36.24 Aligned_cols=37 Identities=32% Similarity=0.719 Sum_probs=18.3
Q ss_pred CcccHHHHHHHHHcCcccCCCccceeeeeeecCCCcccccccccccccCceEE
Q psy1624 7 PFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYL 59 (346)
Q Consensus 7 ~~~~l~~C~~~C~~~~~~~~~~~~~C~Sf~y~~~~~~~~~~~~v~y~~~~C~L 59 (346)
.+.++++|+.+|..+. .|.+|.|.+. ......+.|+|
T Consensus 14 ~~~s~~~C~~~C~~~~--------~C~~~~~~~~--------~~~~~~~~C~L 50 (51)
T PF14295_consen 14 TASSPEECQAACAADP--------GCQAFTFNPP--------GCPSSSGRCYL 50 (51)
T ss_dssp ----HHHHHHHHHTST--------T--EEEEETT--------EE---------
T ss_pred cCCCHHHHHHHccCCC--------CCCEEEEECC--------CcccccccccC
Confidence 5779999999999876 8999999883 01223677876
No 9
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=92.12 E-value=0.21 Score=37.92 Aligned_cols=35 Identities=26% Similarity=0.665 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHcCcccCCCccceeeeeeecCCCcccccccccccccCceEEEccC
Q psy1624 8 FRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRET 63 (346)
Q Consensus 8 ~~~l~~C~~~C~~~~~~~~~~~~~C~Sf~y~~~~~~~~~~~~v~y~~~~C~L~~~~ 63 (346)
+.+.++|+.+|+.+. .|..|+|+.. .+.|+|....
T Consensus 24 ~~s~~~Cq~~C~~~~--------~C~afT~~~~-------------~~~C~lk~~~ 58 (73)
T cd01100 24 ASSAEQCQAACTADP--------GCLAFTYNTK-------------SKKCFLKSSE 58 (73)
T ss_pred cCCHHHHHHHcCCCC--------CceEEEEECC-------------CCeEEcccCC
Confidence 568999999999987 9999999887 8999998764
No 10
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=92.10 E-value=0.25 Score=38.63 Aligned_cols=35 Identities=26% Similarity=0.554 Sum_probs=30.0
Q ss_pred CcccHHHHHHHHHcCcccCCCccceeeeeeecCCCcccccccccccccC---ceEEEcc
Q psy1624 7 PFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEES---TCYLTRE 62 (346)
Q Consensus 7 ~~~~l~~C~~~C~~~~~~~~~~~~~C~Sf~y~~~~~~~~~~~~v~y~~~---~C~L~~~ 62 (346)
-+.++++|+.+|+.+. .|+.|+|... .. .|+|-++
T Consensus 20 ~~~~~~~Cq~~Ct~~~--------~C~~FTf~~~-------------~~~~~~C~LK~s 57 (79)
T smart00223 20 YVPSAQVCQKRCTSHP--------RCLFFTFSTN-------------EPPEEKCLLKDS 57 (79)
T ss_pred ecCCHHHHHHhhcCCC--------CccEEEeeCC-------------CCCCCEeEeCcC
Confidence 3678999999999876 9999999887 55 8999876
No 11
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=89.48 E-value=0.28 Score=33.86 Aligned_cols=33 Identities=21% Similarity=0.619 Sum_probs=17.4
Q ss_pred eecCCHHHHHHHhhccCCCceeceeecC-----CCceeEe
Q psy1624 120 IMASNRTDCEDKCLNEFTFVCRSASYDS-----VAKTCSL 154 (346)
Q Consensus 120 ~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~-----~~~~C~L 154 (346)
+.+.+.++|.++|.... .|..+.|.. ..+.|.|
T Consensus 13 ~~~~s~~~C~~~C~~~~--~C~~~~~~~~~~~~~~~~C~L 50 (51)
T PF14295_consen 13 VTASSPEECQAACAADP--GCQAFTFNPPGCPSSSGRCYL 50 (51)
T ss_dssp -----HHHHHHHHHTST--T--EEEEETTEE---------
T ss_pred ccCCCHHHHHHHccCCC--CCCEEEEECCCcccccccccC
Confidence 36889999999999865 899999988 5678876
No 12
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=85.68 E-value=2.2 Score=33.38 Aligned_cols=49 Identities=12% Similarity=0.340 Sum_probs=40.9
Q ss_pred ecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCCc---eeEeccc
Q psy1624 105 HARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAK---TCSLSRF 157 (346)
Q Consensus 105 ~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~---~C~Ls~~ 157 (346)
.++.-+.| .+...+.+.+.++|.+.|.... .|+-+.|+.... .|.|-..
T Consensus 6 ~~~~df~G--~Dl~~~~~~~~~~Cq~~Ct~~~--~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 6 YKNVDFRG--SDINTVYVPSAQVCQKRCTSHP--RCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred ccCccccC--ceeeeeecCCHHHHHHhhcCCC--CccEEEeeCCCCCCCEeEeCcC
Confidence 34555666 4677888999999999999865 899999999888 9999876
No 13
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=85.07 E-value=2 Score=33.71 Aligned_cols=38 Identities=21% Similarity=0.623 Sum_probs=31.6
Q ss_pred cCCHHHHHHHhhc-cCCCceeceeecCCCceeEecccCc
Q psy1624 122 ASNRTDCEDKCLN-EFTFVCRSASYDSVAKTCSLSRFTR 159 (346)
Q Consensus 122 ~~S~~~Cl~~Cl~-e~~f~CrSa~y~~~~~~C~Ls~~dr 159 (346)
+.+.++|.++|+. +.+..|+++.|....+.|.+-..+.
T Consensus 24 ~~s~~eC~~~Cl~~~~nCsC~Aya~~~~~~gC~~W~~~l 62 (80)
T cd00129 24 ANTADECANRCEKNGLPFSCKAFVFAKARKQCLWFPFNS 62 (80)
T ss_pred ccCHHHHHHHHhcCCCCCCceeeeccCCCCCeEEecCcc
Confidence 4799999999999 4468999999976667898887765
No 14
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=81.82 E-value=3.9 Score=30.50 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=40.5
Q ss_pred eEEEecCceecCCccceeEe-ecCCHHHHHHHhhccCCCceeceeecC--CCceeEecccC
Q psy1624 101 VFERHARKKLKLPAADVKEI-MASNRTDCEDKCLNEFTFVCRSASYDS--VAKTCSLSRFT 158 (346)
Q Consensus 101 ~Fer~~~~~L~g~~~~~~~~-~~~S~~~Cl~~Cl~e~~f~CrSa~y~~--~~~~C~Ls~~d 158 (346)
.|-++++..|-+. ....+ .+.+.++|..+||+.= .|..+.|.. ..+.|.|-..+
T Consensus 6 ~F~~l~~~~~p~~--~~~~~~~~~s~~~C~~~Cl~nC--sC~Ayay~~~~~~~~C~lW~~~ 62 (66)
T PF08276_consen 6 GFLKLPNMKLPDF--DNAIVDSSVSLEECEKACLSNC--SCTAYAYSNLSGGGGCLLWYGD 62 (66)
T ss_pred EEEEECCeeCCCC--cceeeecCCCHHHHHhhcCCCC--CEeeEEeeccCCCCEEEEEcCE
Confidence 6999999988553 23333 5799999999999964 799988865 46899876543
No 15
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=80.74 E-value=3.5 Score=30.73 Aligned_cols=51 Identities=29% Similarity=0.450 Sum_probs=39.9
Q ss_pred cccceeeccccCCccceee-cCCChhHHHHHHhccCceeecceeeee--ecceEEe
Q psy1624 258 TAFQRYRNSKLGGEFHSEI-TGRSLSECLDECLRQASFQCRSAVYSE--RFRICRL 310 (346)
Q Consensus 258 ~~f~r~~~~~l~~~~~~~~-~~~sl~~C~~~C~~~~~~~Crs~~y~~--~~~~c~L 310 (346)
..|-++++++|++.....+ .+.++++|...|+++= .|.+.-|.. ....|.|
T Consensus 5 d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nC--sC~Ayay~~~~~~~~C~l 58 (66)
T PF08276_consen 5 DGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNC--SCTAYAYSNLSGGGGCLL 58 (66)
T ss_pred CEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCC--CEeeEEeeccCCCCEEEE
Confidence 5788889999988544443 6689999999999996 788866654 4588888
No 16
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=79.59 E-value=4.2 Score=30.72 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=40.0
Q ss_pred eeEEEecCceecCCccceeEeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccC
Q psy1624 100 YVFERHARKKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFT 158 (346)
Q Consensus 100 ~~Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~d 158 (346)
..|..+++..+-+. .... ...+.++|.++|+.. =.|..+.|....+.|.+-...
T Consensus 12 ~~f~~~~~~~~~~~--~~~~-~~~s~~~C~~~Cl~n--CsC~a~~~~~~~~~C~~~~~~ 65 (84)
T cd01098 12 DGFLKLPDVKLPDN--ASAI-TAISLEECREACLSN--CSCTAYAYNNGSGGCLLWNGL 65 (84)
T ss_pred CEEEEeCCeeCCCc--hhhh-ccCCHHHHHHHHhcC--CCcceeeecCCCCeEEEEece
Confidence 57888887776543 2222 578999999999986 489998887768899875433
No 17
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=73.54 E-value=4.7 Score=30.44 Aligned_cols=51 Identities=27% Similarity=0.467 Sum_probs=39.1
Q ss_pred cccceeeccccCCccceeecCCChhHHHHHHhccCceeecceeeeeecceEEee
Q psy1624 258 TAFQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLS 311 (346)
Q Consensus 258 ~~f~r~~~~~l~~~~~~~~~~~sl~~C~~~C~~~~~~~Crs~~y~~~~~~c~L~ 311 (346)
..|.+..+..+.+..... .+.++++|.+.|+++= .|.+..|....+.|.+-
T Consensus 12 ~~f~~~~~~~~~~~~~~~-~~~s~~~C~~~Cl~nC--sC~a~~~~~~~~~C~~~ 62 (84)
T cd01098 12 DGFLKLPDVKLPDNASAI-TAISLEECREACLSNC--SCTAYAYNNGSGGCLLW 62 (84)
T ss_pred CEEEEeCCeeCCCchhhh-ccCCHHHHHHHHhcCC--CcceeeecCCCCeEEEE
Confidence 466677777776644333 6789999999999995 89888887667899884
No 18
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=70.47 E-value=5.4 Score=31.22 Aligned_cols=37 Identities=16% Similarity=0.443 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHcCcccCCCccceeeeeeecCCCcccccccccccccCceEEEccC
Q psy1624 9 RVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRET 63 (346)
Q Consensus 9 ~~l~~C~~~C~~~~~~~~~~~~~C~Sf~y~~~~~~~~~~~~v~y~~~~C~L~~~~ 63 (346)
.++++|...|+.+.. ...|++|.|... .+.|.+-...
T Consensus 25 ~s~~eC~~~Cl~~~~-----nCsC~Aya~~~~-------------~~gC~~W~~~ 61 (80)
T cd00129 25 NTADECANRCEKNGL-----PFSCKAFVFAKA-------------RKQCLWFPFN 61 (80)
T ss_pred cCHHHHHHHHhcCCC-----CCCceeeeccCC-------------CCCeEEecCc
Confidence 679999999999321 159999998654 4679987654
No 19
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=57.18 E-value=21 Score=26.30 Aligned_cols=41 Identities=22% Similarity=0.506 Sum_probs=32.6
Q ss_pred ceeecCCChhHHHHHHhccCceeecceeeeeecceEEeeecccCC
Q psy1624 273 HSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRD 317 (346)
Q Consensus 273 ~~~~~~~sl~~C~~~C~~~~~~~Crs~~y~~~~~~c~L~~~~~~~ 317 (346)
.......+.++|++.|.+.. .|--+-+. ...|.|..++...
T Consensus 14 ~~~~~~~sw~~Cv~~C~~~~--~C~la~~~--~~~C~~y~~~~i~ 54 (71)
T PF08277_consen 14 SSSTTNTSWDDCVQKCYNDE--NCVLAYFD--SGKCYLYNYGSIS 54 (71)
T ss_pred cccccCCCHHHHhHHhCCCC--EEEEEEeC--CCCEEEEEcCCEE
Confidence 34455679999999999997 88877777 8899998776643
No 20
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=51.63 E-value=26 Score=25.83 Aligned_cols=38 Identities=26% Similarity=0.536 Sum_probs=31.5
Q ss_pred EeecCCHHHHHHHhhccCCCceeceeecCCCceeEecccCcc
Q psy1624 119 EIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRR 160 (346)
Q Consensus 119 ~~~~~S~~~Cl~~Cl~e~~f~CrSa~y~~~~~~C~Ls~~dr~ 160 (346)
.....+-++|+++|.+.. .|--|-++ ...|.|......
T Consensus 16 ~~~~~sw~~Cv~~C~~~~--~C~la~~~--~~~C~~y~~~~i 53 (71)
T PF08277_consen 16 STTNTSWDDCVQKCYNDE--NCVLAYFD--SGKCYLYNYGSI 53 (71)
T ss_pred cccCCCHHHHhHHhCCCC--EEEEEEeC--CCCEEEEEcCCE
Confidence 446889999999999975 89998888 889998877553
No 21
>smart00765 MANEC The MANEC domain was formerly called MANSC. This domain, comprising 8 conserved cysteines, is found in the N terminus of higher multicellular animal membrane and extracellular proteins. It is postulated that this domain may play a role in the formation of protein complexes involving various protease activators and inhibitors. It is possible that some of the cysteine residues in the MANSC domain form structurally important disulfide bridges. All of the MANSC-containing proteins contain predicted transmembrane regions and signal peptides. It has been proposed that the MANSC domain in HAI-1 might function through binding with hepatocyte growth factor activator and matriptase.
Probab=28.02 E-value=93 Score=25.16 Aligned_cols=43 Identities=23% Similarity=0.435 Sum_probs=30.3
Q ss_pred CCCCCcccHHHHHHHHHcCcccCCCccceeeeeeecCCCcccccccccccccCceEEEcc
Q psy1624 3 DTAPPFRVLEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRE 62 (346)
Q Consensus 3 ~~~~~~~~l~~C~~~C~~~~~~~~~~~~~C~Sf~y~~~~~~~~~~~~v~y~~~~C~L~~~ 62 (346)
++.+-+.+.++|+.+|=... .|.-+-|.... .-..+.|+|+.=
T Consensus 32 ~~p~~~~s~edC~~aCC~~~--------~CnlAv~e~~~---------~~~~~~CyLf~C 74 (93)
T smart00765 32 KSPIAVNTWEDCVRACCSTP--------NCNLAVFELRR---------EDAEGNCYLFNC 74 (93)
T ss_pred CCccccCCHHHHHHHHcCCC--------CCcEEEEeccC---------CCCCCceEEEEc
Confidence 44456889999999999876 79888885320 011567998863
No 22
>PRK13669 hypothetical protein; Provisional
Probab=25.92 E-value=97 Score=24.33 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=32.6
Q ss_pred eeeecCceeEeccccCccccccCCCCCceeEEEecCceecCCccceeEeecCCHHHHHHH
Q psy1624 72 LVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCEDK 131 (346)
Q Consensus 72 l~~~p~~~Y~eK~Cl~~~~~~~~C~~r~~~Fer~~~~~L~g~~~~~~~~~~~S~~~Cl~~ 131 (346)
|..+|+.+..|.-|++- |..|..++|.+. -| +.+.+.+.++++++
T Consensus 23 Le~dP~~dVie~gCls~---CG~C~~~~FAlV--ng----------~~V~a~t~eeL~~k 67 (78)
T PRK13669 23 LEKDPNLDVLEYGCLGY---CGICSEGLFALV--NG----------EVVEGETPEELVEN 67 (78)
T ss_pred HHhCCCceEEEcchhhh---CcCcccCceEEE--CC----------eEeecCCHHHHHHH
Confidence 55678899999999987 588876666543 22 34557788888775
Done!