RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1624
(346 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 3e-05
Identities = 37/312 (11%), Positives = 85/312 (27%), Gaps = 80/312 (25%)
Query: 74 LVPNSVHYNEVCLSSTRIEREC------PNRHYVFERHARKKLKLPAADVKEIMASNRTD 127
+ PN + S+ I+ R + + L L +V
Sbjct: 209 IDPN---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--LNV---------- 253
Query: 128 CEDKCLNEFTFVCR---SASYDSVAKTCSLSRFTRRS---HPEMLEDDPNADYLENTCLN 181
K N F C+ + + V S + T S H L D L L+
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLD 312
Query: 182 ------SERRCDG-P----VI--FVKEENKRLGGPFEVDIYANLSLLECQAQCLGAEKFK 228
P +I +++ V+ +++E L +++
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 229 GTDLYLTKGND---FPENS-VTSHLFADGRRPDTAFQRYRNSKLGGEFHSEITGRSLSEC 284
++ + FP ++ + + L S + + +++
Sbjct: 373 --KMF----DRLSVFPPSAHIPTILL---------------SLIWFDVIKSDVMVVVNKL 411
Query: 285 LDECL---RQASFQCRSAVYSERFRICRLSRFNQRDGHRIV---YDPDYDYYENLMSKIT 338
L + + S + ++ N+ HR + Y+ + + +
Sbjct: 412 HKYSLVEKQPKESTIS--IPSIYLEL-KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 339 -----FPFFSYH 345
+ +H
Sbjct: 469 LDQYFYSHIGHH 480
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 4e-05
Identities = 79/453 (17%), Positives = 126/453 (27%), Gaps = 179/453 (39%)
Query: 19 LRDR-TATINLVRTCTSFDFQPGSRI---ASFSG--AVEYEESTCYLTRETAHPEGIGNL 72
L+++ + + D +P + F G + E S + + + NL
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS------KVGQFDQVLNL 86
Query: 73 VLVP--------NSVH--------YNEVCLSSTR--IE-----RECPNRHYVFERHARKK 109
L N +H N+ L T+ I+ R R F++ +
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP--FDKKSNSA 144
Query: 110 LKLPAADVKE--IMA-----SNRTDCEDKCLNEFTFVCRS--ASY--------DSVAKTC 152
L A ++A N D E R +Y A+T
Sbjct: 145 L-FRAVGEGNAQLVAIFGGQGNTDDY----FEEL----RDLYQTYHVLVGDLIKFSAETL 195
Query: 153 -SLSR---FTRRSHPEML---------EDDPNADYLENTCLNSERRCDGPVIFV------ 193
L R + + L + P+ DYL + S P+I V
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-LSIPIS-----CPLIGVIQLAHY 249
Query: 194 -----------KEENKRLGG---------------------PFEVDIYANLSLL-----E 216
E L G F V + +++L
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 217 CQAQCLGAEKFKGTDLYLTKGNDFPENS--VTSHLFA-DGRRPDTAFQ--RYRNSKLGGE 271
C E + T L + D EN+ V S + + + NS L
Sbjct: 310 CY------EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 272 FHSEI-----------TG--RSLSECLDECLRQASF-----QCRSAVYSERFRICRLSRF 313
EI +G +SL L+ LR+A Q R +SER +F
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSL-YGLNLTLRKAKAPSGLDQSR-IPFSER-----KLKF 416
Query: 314 NQRDGHRIVYDPDYDYYENLMSKITFPFFSYHY 346
+ R + P + PF S H
Sbjct: 417 SNR------FLP-----------VASPFHS-HL 431
Score = 41.2 bits (96), Expect = 5e-04
Identities = 61/386 (15%), Positives = 102/386 (26%), Gaps = 126/386 (32%)
Query: 3 DTAPPFRVLEKCQ----ELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCY 58
P L + + + V T F PG + GA
Sbjct: 223 SNTPDKDYLLSIPISCPLIGV---IQLAHYVVTAKLLGFTPGELRSYLKGA--------- 270
Query: 59 LTRETAHPEGIGNLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKL------ 112
T H +G+ + V ++ T F RK + +
Sbjct: 271 ----TGHSQGL----VTA-------VAIAETDSWES-------FFVSVRKAITVLFFIGV 308
Query: 113 ---PAADVKEIMASNRTDCEDKCLNEFT----FVCRSASYDSVAKTCSLSRFTRRSHPEM 165
A + S D + NE + + + V T P
Sbjct: 309 RCYEAYPNTSLPPSILEDSLEN--NEGVPSPMLSISNLTQEQVQDYV---NKTNSHLP-- 361
Query: 166 LEDDPNADYLENTCLNSERRCDGPVIFVKEENKRLGGPFEVDIYA-NLSLLECQA----- 219
L N G V + GP + +Y NL+L + +A
Sbjct: 362 -AGKQVEISLVN----------GAKNLV------VSGPPQ-SLYGLNLTLRKAKAPSGLD 403
Query: 220 QC---LGAEKFKGTDLYLTKGNDFPENS-----VTSHLFADGRRPDTAFQRYRNSKLGGE 271
Q K K ++ +L + P +S + + D + + +F +
Sbjct: 404 QSRIPFSERKLKFSNRFLPVAS--PFHSHLLVPASDLINKDLVKNNVSF---NAKDIQIP 458
Query: 272 -FHSEITG---RSLSECLDECLRQASFQCRSAVYSER-----------F------RICRL 310
+ + G R LS + E + R V E F + L
Sbjct: 459 VYDTF-DGSDLRVLSGSISERIVDC--IIRLPVKWETTTQFKATHILDFGPGGASGLGVL 515
Query: 311 -SRFNQRDGHRIV------YDPDYDY 329
R G R++ +PD DY
Sbjct: 516 THRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 36.6 bits (84), Expect = 0.012
Identities = 48/282 (17%), Positives = 84/282 (29%), Gaps = 99/282 (35%)
Query: 70 GNL---VLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRT 126
G+L +LVP + + L +E F + LP + A +
Sbjct: 14 GSLEHVLLVPTASFFIASQL------QEQ------FNKI------LPEPT-EGFAADDEP 54
Query: 127 DCEDKCLNEF-TFVCR------SASYDSVAKTCSLSRFTRRS------H---PEMLEDDP 170
+ + +F +V +D V L+ F H ++L+++
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL-CLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 171 NAD---------YLENTCLNSER---RCDGPVIF--VKEENKRL----GG------PFE- 205
Y+ + ++R + +F V E N +L GG FE
Sbjct: 114 TTLVKTKELIKNYIT-ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 206 ----VDIYANL--SLLECQAQCLG--AEKFKGTDLYLTKGNDFPENSVTSHLFADGRRPD 257
Y L L++ A+ L + T+G + + L PD
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-----ILEWLENPSNTPD 227
Query: 258 TAF--------------Q--RYRNS--KLG---GEFHSEITG 278
+ Q Y + LG GE S + G
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 44.3 bits (104), Expect = 5e-05
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 260 FQRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGH 319
+ + + L ++ S+ EC +C F CR+ Y + + C + N++
Sbjct: 6 YVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQYHSKEQQCVIMAENRKS-S 64
Query: 320 RIVYDPDYDYYEN 332
I+ D +E
Sbjct: 65 IIIRMRDVVLFEK 77
Score = 38.9 bits (90), Expect = 0.002
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 108 KKLKLPAADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLE 167
+ L + K++ A + +C KC + F CR+ Y S + C + R+S +
Sbjct: 10 QGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQYHSKEQQCVIMAENRKSSI--II 67
Query: 168 DDPNADYLENTCLNSERR 185
+ E SE +
Sbjct: 68 RMRDVVLFEKKVYLSECK 85
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.051
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 103 ERHARKKL----KLPAADVKEIMASNRT 126
E+ A KKL KL A D +A T
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT 45
>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide
bond, glycoprotein, kringle, pyrrolidone carboxylic
acid, serine protea homolog; 1.70A {Homo sapiens} PDB:
3hmt_A 2hgf_A 3hmr_A
Length = 101
Score = 30.5 bits (68), Expect = 0.23
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 254 RRPDTAFQRYRNSKLGGEFHSEITG----RSLSECLDECLRQA--SFQCRSAVYSERFRI 307
R F++ + L + + +C + C R F C++ V+ + +
Sbjct: 11 RNTIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQ 70
Query: 308 CRLSRFNQR-DGHRIVYDPDYDYYEN 332
C FN G + + ++D YEN
Sbjct: 71 CLWFPFNSMSSGVKKEFGHEFDLYEN 96
Score = 30.5 bits (68), Expect = 0.26
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 113 PAADVKEIMASNRTDCEDKCLN--EFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDP 170
PA +K + C ++C F C++ +D K C F S E
Sbjct: 30 PALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGH 89
Query: 171 NADYLEN 177
D EN
Sbjct: 90 EFDLYEN 96
>3sp8_A Hepatocyte growth factor alpha chain; kringle domain, Met tyrosine
kinase, hormone; HET: MES; 1.86A {Homo sapiens} PDB:
3hn4_A*
Length = 264
Score = 30.4 bits (67), Expect = 0.72
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 113 PAADVKEIMASNRTDCEDKCLNE--FTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDP 170
PA +K + C ++C F C++ +D K C F S E
Sbjct: 30 PALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGH 89
Query: 171 NADYLENTCLNSE 183
D EN
Sbjct: 90 EFDLYENKDYIRN 102
Score = 30.4 bits (67), Expect = 0.79
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 260 FQRYRNSKLGGEFHSEITGRSLSECLDECLRQAS------FQCRSAVYSERFRICRLSRF 313
F++ + L + D+C + + F C++ V+ + + C F
Sbjct: 17 FKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPF 76
Query: 314 NQRDGH-RIVYDPDYDYYENLMSK 336
N + + ++D YEN
Sbjct: 77 NSMSSGVKKEFGHEFDLYENKDYI 100
>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A
{Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A
3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A
Length = 184
Score = 29.5 bits (65), Expect = 1.1
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 113 PAADVKEIMASNRTDCEDKCLN--EFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDP 170
PA +K + C ++C F C++ +D K C F S E
Sbjct: 30 PALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGH 89
Query: 171 NADYLENTCLNSE 183
D EN
Sbjct: 90 EFDLYENKDYIRN 102
Score = 28.3 bits (62), Expect = 3.0
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 254 RRPDTAFQRYRNSK-------LGGEFHSEITGRSLSECLDECL--RQASFQCRSAVYSER 304
R+ ++ S + +C + C + F C++ V+ +
Sbjct: 8 RKRRNTIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKA 67
Query: 305 FRICRLSRFNQRDGH-RIVYDPDYDYYEN 332
+ C FN + + ++D YEN
Sbjct: 68 RKQCLWFPFNSMSSGVKKEFGHEFDLYEN 96
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem
repeat, PAN_AP, P galactose-binding lectin, cellular
adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*
Length = 138
Score = 29.0 bits (64), Expect = 1.2
Identities = 17/106 (16%), Positives = 28/106 (26%), Gaps = 16/106 (15%)
Query: 116 DVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNADYL 175
+ + ++ DC +C T C +Y+ +K C L E +
Sbjct: 22 QLSVVHVASAQDCMKECQALPT--CSHFTYNKNSKKCHL-------KAGAPEFYTYTGDM 72
Query: 176 ENTCLNSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQC 221
D + P V Y+ C A C
Sbjct: 73 TGPRSCEHNCSDACWMDG-------NNPLAVWDYSGQPPALCWAAC 111
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}
Length = 161
Score = 27.2 bits (59), Expect = 6.3
Identities = 20/144 (13%), Positives = 39/144 (27%), Gaps = 43/144 (29%)
Query: 11 LEKCQELCLRDRTATINLVRTCTSFDFQPGSRIASFSGAVEYEESTCYLTRETAHPEGIG 70
LE+C C CT F + S+ C++ +
Sbjct: 33 LEQCAAQCKAVDG--------CTHFTYNDDSK-------------MCHVKEGKPDLYDLT 71
Query: 71 NLVLVPNSVHYNEVCLSSTRIERECPNRHYVFERHARKKLKLPAADVKEIMASNRTDCED 130
S + C +H +E + ++ S DC+
Sbjct: 72 GGKTASRSCDRS------------CFEQHVSYEGAPD--------VMTAMVTSQSADCQA 111
Query: 131 KCLNEFTFVCRSASYDSVAKTCSL 154
C + + C +Y+ + C+
Sbjct: 112 ACAADPS--CEIFTYNEHDQKCTF 133
Score = 26.8 bits (58), Expect = 8.6
Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 16/110 (14%)
Query: 114 AADVKEIMASNRTDCEDKCLNEFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDPNAD 173
+ + + C +C C +Y+ +K C + +
Sbjct: 22 PTIGEPVPDVSLEQCAAQCKAVDG--CTHFTYNDDSKMCHVK------------EGKPDL 67
Query: 174 YLENTCLNSERRCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQAQCLG 223
Y + R CD + G P + +CQA C
Sbjct: 68 YDLTGGKTASRSCDRSCFE--QHVSYEGAPDVMTAMVTSQSADCQAACAA 115
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C*
3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C*
3sr6_C*
Length = 755
Score = 27.3 bits (61), Expect = 8.9
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 262 RYRNSKLGGE---FHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDG 318
R++N G+ F+ + G S+ C DECL+ + + R + + FN+ +
Sbjct: 372 RWKNMYKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDK---------FNKENC 422
Query: 319 HR 320
+
Sbjct: 423 WK 424
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.418
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,335,900
Number of extensions: 304527
Number of successful extensions: 671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 19
Length of query: 346
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 252
Effective length of database: 4,077,219
Effective search space: 1027459188
Effective search space used: 1027459188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)