RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1624
         (346 letters)



>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 91

 Score = 61.9 bits (150), Expect = 5e-13
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 113 PAADVKEIMASNRTDCEDKCLN--EFTFVCRSASYDSVAKTCSLSRFTRRSHPEMLEDDP 170
           PA  +K    +    C ++C       F C++  +D   K C    F   S     E   
Sbjct: 20  PALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGH 79

Query: 171 NADYLEN 177
             D  EN
Sbjct: 80  EFDLYEN 86



 Score = 56.5 bits (136), Expect = 5e-11
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 260 FQRYRNSKL----GGEFHSEITGRSLSECLDECLR--QASFQCRSAVYSERFRICRLSRF 313
           F++   + L               +  +C + C R     F C++ V+ +  + C    F
Sbjct: 7   FKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPF 66

Query: 314 NQR-DGHRIVYDPDYDYYEN 332
           N    G +  +  ++D YEN
Sbjct: 67  NSMSSGVKKEFGHEFDLYEN 86


>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B),
           Pyr module {Pseudomonas putida [TaxId: 303]}
          Length = 204

 Score = 28.9 bits (64), Expect = 0.63
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 179 CLNSERRCDGPVIFVKEENKRL-GGPFEVD 207
            L +   CD PVIF+  E KRL  GPF+  
Sbjct: 158 LLIASIECDDPVIFL--EPKRLYNGPFDGH 185


>d3c2wa2 d.110.2.4 (A:310-494) Bacteriophytochrome BphP {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 185

 Score = 28.8 bits (64), Expect = 0.68
 Identities = 8/35 (22%), Positives = 13/35 (37%)

Query: 185 RCDGPVIFVKEENKRLGGPFEVDIYANLSLLECQA 219
            CDG ++ +      + G FE      L  L+   
Sbjct: 42  PCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDP 76


>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 166

 Score = 26.7 bits (58), Expect = 2.9
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 261 QRYRNSKLGGEFHSEITGRSLSECLDECLRQASFQCRSAVYSERFRICRLSRFNQRDGHR 320
            R+   K    F + I      + +D   ++   Q       ERFR    + +    G  
Sbjct: 20  VRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 79

Query: 321 IVYDP-DYDYYENLMSKITFPFFSYH 345
           +VYD  D   + N+           +
Sbjct: 80  LVYDITDERTFTNIKQWFKTVNEHAN 105


>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate
           dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 192

 Score = 27.0 bits (59), Expect = 3.2
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 180 LNSERRCDGPVIFVKEENKRL-GGPFEV 206
           + S  R + PV+ +  EN+ + G PFE 
Sbjct: 158 IKSAIRDNNPVVVL--ENELMYGVPFEF 183


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,325,670
Number of extensions: 62216
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 8
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)