BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16240
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GOV|A Chain A, The Crystal Structure Of Human Fascin 1 S39d Mutant
pdb|4GOV|B Chain B, The Crystal Structure Of Human Fascin 1 S39d Mutant
Length = 493
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 96/147 (65%), Gaps = 4/147 (2%)
Query: 126 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYD 185
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+Q++ K+++ +D
Sbjct: 278 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFD 337
Query: 186 LVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVG 245
+ W+ D + LRA+NGKF+ +K++G L A+ ++A DS + LINRPI+V + E GF+G
Sbjct: 338 IEWR-DRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIG 396
Query: 246 FKTGANNSLRLECNKANYETIQVERAD 272
+ L+ N+++Y+ Q+E D
Sbjct: 397 CRKVTGT---LDANRSSYDVFQLEFND 420
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 30/174 (17%)
Query: 28 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKV 87
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+ +S S +
Sbjct: 278 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGV---QSTASSKNASC 334
Query: 88 RTVLQYLEVKI--QYFYGLYCTDKPSK----------------FKIYSVPL-------SF 122
+++ + +I + G + T K + K+ + P+ F
Sbjct: 335 YFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGF 394
Query: 123 LSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGD 176
+ S ++ FQLEF+ + I+ +YWT+ + + +SGD
Sbjct: 395 IGCRKVTGTLDANRSSYDVFQLEFNDGA--YNIKDSTGKYWTVGSDSAVTSSGD 446
>pdb|1DFC|A Chain A, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
pdb|1DFC|B Chain B, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
pdb|3LLP|A Chain A, 1.8 Angstrom Human Fascin 1 Crystal Structure
pdb|3LLP|B Chain B, 1.8 Angstrom Human Fascin 1 Crystal Structure
Length = 493
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 96/147 (65%), Gaps = 4/147 (2%)
Query: 126 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYD 185
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+Q++ K+++ +D
Sbjct: 278 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFD 337
Query: 186 LVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVG 245
+ W+ D + LRA+NGKF+ +K++G L A+ ++A DS + LINRPI+V + E GF+G
Sbjct: 338 IEWR-DRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIG 396
Query: 246 FKTGANNSLRLECNKANYETIQVERAD 272
+ L+ N+++Y+ Q+E D
Sbjct: 397 CRKVTGT---LDANRSSYDVFQLEFND 420
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 30/174 (17%)
Query: 28 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKV 87
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+ +S S +
Sbjct: 278 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGV---QSTASSKNASC 334
Query: 88 RTVLQYLEVKI--QYFYGLYCTDKPSK----------------FKIYSVPL-------SF 122
+++ + +I + G + T K + K+ + P+ F
Sbjct: 335 YFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGF 394
Query: 123 LSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGD 176
+ S ++ FQLEF+ + I+ +YWT+ + + +SGD
Sbjct: 395 IGCRKVTGTLDANRSSYDVFQLEFNDGA--YNIKDSTGKYWTVGSDSAVTSSGD 446
>pdb|4GP0|A Chain A, The Crystal Structure Of Human Fascin 1 R149a K150a R151a
Mutant
pdb|4GP0|B Chain B, The Crystal Structure Of Human Fascin 1 R149a K150a R151a
Mutant
Length = 493
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 98/149 (65%), Gaps = 8/149 (5%)
Query: 126 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYD 185
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+Q++ K+++ +D
Sbjct: 278 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFD 337
Query: 186 LVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVG 245
+ W+ D + LRA+NGKF+ +K++G L A+ ++A DS + LINRPI+V + E GF+G
Sbjct: 338 IEWR-DRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIG 396
Query: 246 FK--TGANNSLRLECNKANYETIQVERAD 272
+ TG L+ N+++Y+ Q+E D
Sbjct: 397 CRKVTGT-----LDANRSSYDVFQLEFND 420
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 30/174 (17%)
Query: 28 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKV 87
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+ +S S +
Sbjct: 278 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGV---QSTASSKNASC 334
Query: 88 RTVLQYLE--VKIQYFYGLYCTDKPSK----------------FKIYSVPL-------SF 122
+++ + + ++ G + T K + K+ + P+ F
Sbjct: 335 YFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGF 394
Query: 123 LSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGD 176
+ S ++ FQLEF+ + I+ +YWT+ + + +SGD
Sbjct: 395 IGCRKVTGTLDANRSSYDVFQLEFNDGA--YNIKDSTGKYWTVGSDSAVTSSGD 446
>pdb|3P53|A Chain A, Structure Of Fascin
pdb|3P53|B Chain B, Structure Of Fascin
Length = 496
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 98/149 (65%), Gaps = 8/149 (5%)
Query: 126 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYD 185
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+Q++ K+++ +D
Sbjct: 281 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFD 340
Query: 186 LVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVG 245
+ W+ D + LRA+NGKF+ +K++G L A+ ++A DS + LINRPI+V + E GF+G
Sbjct: 341 IEWR-DRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIG 399
Query: 246 FK--TGANNSLRLECNKANYETIQVERAD 272
+ TG L+ N+++Y+ Q+E D
Sbjct: 400 CRKVTGT-----LDANRSSYDVFQLEFND 423
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 30/174 (17%)
Query: 28 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKV 87
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+ +S S +
Sbjct: 281 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGV---QSTASSKNASC 337
Query: 88 RTVLQYLEVKI--QYFYGLYCTDKPSK----------------FKIYSVPL-------SF 122
+++ + +I + G + T K + K+ + P+ F
Sbjct: 338 YFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGF 397
Query: 123 LSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGD 176
+ S ++ FQLEF+ + I+ +YWT+ + + +SGD
Sbjct: 398 IGCRKVTGTLDANRSSYDVFQLEFNDGA--YNIKDSTGKYWTVGSDSAVTSSGD 449
>pdb|4GOY|A Chain A, The Crystal Structure Of Human Fascin 1 K41a Mutant
pdb|4GOY|B Chain B, The Crystal Structure Of Human Fascin 1 K41a Mutant
Length = 493
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 98/149 (65%), Gaps = 8/149 (5%)
Query: 126 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYD 185
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+Q++ K+++ +D
Sbjct: 278 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFD 337
Query: 186 LVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVG 245
+ W+ D + LRA+NGKF+ +K++G L A+ ++A DS + LINRPI+V + E GF+G
Sbjct: 338 IEWR-DRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIG 396
Query: 246 FK--TGANNSLRLECNKANYETIQVERAD 272
+ TG L+ N+++Y+ Q+E D
Sbjct: 397 CRKVTGT-----LDANRSSYDVFQLEFND 420
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 30/174 (17%)
Query: 28 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKV 87
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+ +S S +
Sbjct: 278 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGV---QSTASSKNASC 334
Query: 88 RTVLQYLEVKI--QYFYGLYCTDKPSK----------------FKIYSVPL-------SF 122
+++ + +I + G + T K + K+ + P+ F
Sbjct: 335 YFDIEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGF 394
Query: 123 LSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGD 176
+ S ++ FQLEF+ + I+ +YWT+ + + +SGD
Sbjct: 395 IGCRKVTGTLDANRSSYDVFQLEFNDGA--YNIKDSTGKYWTVGSDSAVTSSGD 446
>pdb|4GP3|A Chain A, The Crystal Structure Of Human Fascin 1 K358a Mutant
pdb|4GP3|B Chain B, The Crystal Structure Of Human Fascin 1 K358a Mutant
Length = 493
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 97/149 (65%), Gaps = 8/149 (5%)
Query: 126 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYD 185
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+Q++ K+++ +D
Sbjct: 278 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFD 337
Query: 186 LVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVG 245
+ W+ D + LRA+NGKF+ + ++G L A+ ++A DS + LINRPI+V + E GF+G
Sbjct: 338 IEWR-DRRITLRASNGKFVTSAKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIG 396
Query: 246 FK--TGANNSLRLECNKANYETIQVERAD 272
+ TG L+ N+++Y+ Q+E D
Sbjct: 397 CRKVTGT-----LDANRSSYDVFQLEFND 420
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 30/174 (17%)
Query: 28 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKV 87
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+ +S S +
Sbjct: 278 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGV---QSTASSKNASC 334
Query: 88 RTVLQYLEVKI--QYFYGLYCTDKPSK----------------FKIYSVPL-------SF 122
+++ + +I + G + T + K+ + P+ F
Sbjct: 335 YFDIEWRDRRITLRASNGKFVTSAKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGF 394
Query: 123 LSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGD 176
+ S ++ FQLEF+ + I+ +YWT+ + + +SGD
Sbjct: 395 IGCRKVTGTLDANRSSYDVFQLEFNDGA--YNIKDSTGKYWTVGSDSAVTSSGD 446
>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide
Ekpaavvapittg From Sip
Length = 193
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 15 ATVSLFPLSFLSSGVDVTANQEEISDHETFQLEFDP 50
A LFP + SSG ++T E +DHE EF P
Sbjct: 2 ANSVLFPCKYASSGCEITLPHTEKADHEEL-CEFRP 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,959,216
Number of Sequences: 62578
Number of extensions: 373928
Number of successful extensions: 875
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 27
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)