RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16240
(284 letters)
>gnl|CDD|238160 cd00257, Fascin, Fascin-like domain; members include
actin-bundling/crosslinking proteins facsin,
histoactophilin and singed; identified in sea urchin,
Drosophila, Xenopus, rodents, and humans; The
fascin-like domain adopts a beta-trefoil topology and
contains an internal threefold repeat; the fascin
subgroup contains four copies of the domain;
Structurally similar to fibroblast growth factor (FGF).
Length = 119
Score = 97.3 bits (243), Expect = 2e-25
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 120 LSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKS 179
LS + G V AN++ + ETF LEFD T ++ +R+ +Y + ++ GG+Q G +
Sbjct: 14 LSAEAGGDKVDANRDSLKGDETFTLEFDN-TGKYALRSHDGKYLSADSDGGVQLEGHPNA 72
Query: 180 SNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYF 227
+ L + GDG ALRA NG+++ SG L A+S++ +
Sbjct: 73 D-CRFTLEFHGDGKWALRAENGRYLGGDGSGTLKASSETVGPDELFEL 119
Score = 49.2 bits (118), Expect = 1e-07
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 22 LSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGG 72
LS + G V AN++ + ETF LEFD T ++ +R+ +Y + ++ GG
Sbjct: 14 LSAEAGGDKVDANRDSLKGDETFTLEFDN-TGKYALRSHDGKYLSADSDGG 63
>gnl|CDD|203418 pfam06268, Fascin, Fascin domain. This family consists of several
eukaryotic fascin or singed proteins. The fascins are a
structurally unique and evolutionarily conserved group
of actin cross-linking proteins. Fascins function in the
organisation of two major forms of actin-based
structures: dynamic, cortical cell protrusions and
cytoplasmic microfilament bundles. The cortical
structures, which include filopodia, spikes,
lamellipodial ribs, oocyte microvilli and the dendrites
of dendritic cells, have roles in cell-matrix adhesion,
cell interactions and cell migration, whereas the
cytoplasmic actin bundles appear to participate in cell
architecture. Dictyostelium hisactophilin, another
actin-binding protein, is a submembranous pH sensor that
signals slight changes of the H+ concentration to actin
by inducing actin polymerisation and binding to
microfilaments only at pH values below seven. Members of
this family are histidine rich, typically contain the
repeated motif of HHXH.
Length = 108
Score = 73.1 bits (180), Expect = 2e-16
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 126 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYD 185
G + AN+E S + F LEF+ + +R+ +Y + ++ G + + + S + ++
Sbjct: 11 GAHLNANRESESAVQLFTLEFNDGSYS--LRSHDGKYLSADSDGRVVSEAE-TSPDTRFE 67
Query: 186 LVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDS 222
L ++G G LR +NG+++ +G L AN+ +
Sbjct: 68 LEFRG-GWALLRDSNGRYLGGGPNGLLKANASTVGKD 103
Score = 46.1 bits (110), Expect = 1e-06
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 28 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESR 79
G + AN+E S + F LEF+ + +R+ +Y + ++ G ++ E
Sbjct: 11 GAHLNANRESESAVQLFTLEFNDGSYS--LRSHDGKYLSADSDGRVVSEAET 60
>gnl|CDD|214665 smart00442, FGF, Acidic and basic fibroblast growth factor family.
Mitogens that stimulate growth or differentiation of
cells of mesodermal or neuroectodermal origin. The
family play essential roles in patterning and
differentiation during vertebrate embryogenesis, and
have neurotrophic activities.
Length = 126
Score = 27.2 bits (61), Expect = 5.5
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 150 TKRW---YIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALR-ANNGKFIA 205
TKR Y R Q + + G + + D+ SS + +++ G VA++ + +++
Sbjct: 1 TKRLRQLYCRNGQ--HLQILPDGTVDGTRDESSSFTILEIIAVAVGVVAIKGVASCRYLC 58
Query: 206 TKRSGHLYANSDSADDSCRY 225
+ G LY + + +D C +
Sbjct: 59 MNKCGKLYGSKNFTED-CVF 77
>gnl|CDD|215346 PLN02643, PLN02643, ADP-glucose phosphorylase.
Length = 336
Score = 27.8 bits (62), Expect = 6.3
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 26 SSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRY 64
SSG E E F++ D S W +R +++ Y
Sbjct: 40 SSGCPFCIGHEHECAPEIFRVPDDASAPDWKVRVIENLY 78
Score = 27.8 bits (62), Expect = 6.3
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 124 SSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRY 162
SSG E E F++ D S W +R +++ Y
Sbjct: 40 SSGCPFCIGHEHECAPEIFRVPDDASAPDWKVRVIENLY 78
>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase;
Provisional.
Length = 355
Score = 28.0 bits (63), Expect = 6.6
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 230 INRPILVLKCEQGFVGFKTGA 250
+ PI EQGF GF GA
Sbjct: 85 FDTPI----TEQGFAGFAIGA 101
>gnl|CDD|184958 PRK14996, PRK14996, TetR family transcriptional regulator;
Provisional.
Length = 192
Score = 27.0 bits (60), Expect = 9.6
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 147 DPSTKRWYIRTMQDRYWTLETGGGI---QASGDKKSSNALYDLVW 188
DP K Y+ TMQ W ET I +A+G+ +S++ D+ W
Sbjct: 111 DPEIKDAYLLTMQM--WHQETVAIIEQGKAAGEFRSTSNATDIAW 153
>gnl|CDD|227125 COG4786, FlgG, Flagellar basal body rod protein [Cell motility and
secretion].
Length = 265
Score = 27.3 bits (61), Expect = 9.6
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 175 GDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSD 217
G + ++ DL GDG ++ +G T R G + +
Sbjct: 84 GSLQKTDNPLDLAITGDGFFQIQTPDGTIAYT-RDGSFTVDEE 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.401
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,217,977
Number of extensions: 1297604
Number of successful extensions: 922
Number of sequences better than 10.0: 1
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 15
Length of query: 284
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 188
Effective length of database: 6,679,618
Effective search space: 1255768184
Effective search space used: 1255768184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)