RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16240
(284 letters)
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis,
CE migration, acetylation, actin-binding, cytoplasm,
phosphopr protein binding; HET: EPE; 1.80A {Homo
sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A*
Length = 493
Score = 160 bits (406), Expect = 4e-46
Identities = 73/247 (29%), Positives = 119/247 (48%), Gaps = 25/247 (10%)
Query: 36 EEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKVRTVLQYLE 95
+ LEF R + RY G + + + L LE
Sbjct: 204 ARPEPATGYTLEFRSGK--VAFRDCEGRYLAPSGPSGTL----KAGKATKVGKDELFALE 257
Query: 96 VKIQYFYGLYCTDKPSKFKIYSVPLSFLS--SGVDVTANQEEISDHETFQLEFDPSTKRW 153
++ + + +S G+D++ANQ+E +D ETFQLE D TK+
Sbjct: 258 ------------QSCAQVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDTKKC 305
Query: 154 YIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLY 213
RT +YWTL GG+Q++ K+++ +D+ W+ D + LRA+NGKF+ +K++G L
Sbjct: 306 AFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWR-DRRITLRASNGKFVTSKKNGQLA 364
Query: 214 ANSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQVERADR 273
A+ ++A DS + LINRPI+V + E GF+G + L+ N+++Y+ Q+E D
Sbjct: 365 ASVETAGDSELFLMKLINRPIIVFRGEHGFIGCRKVTG---TLDANRSSYDVFQLEFND- 420
Query: 274 GVVYFKG 280
G K
Sbjct: 421 GAYNIKD 427
Score = 84.8 bits (209), Expect = 9e-19
Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 36/221 (16%)
Query: 29 VDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKVR 88
+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+ S ++
Sbjct: 279 MDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNAS-CYFD 337
Query: 89 TVLQYLEVKIQYFYGLYCTDKPS--------------KFKIYSVPLSFL----------- 123
+ + ++ G + T K + F + + +
Sbjct: 338 IEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIGC 397
Query: 124 -SSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNA 182
+ AN+ S ++ FQLEF + + I+ +YWT+ + + +SGD
Sbjct: 398 RKVTGTLDANR---SSYDVFQLEF--NDGAYNIKDSTGKYWTVGSDSAVTSSGDTPVD-- 450
Query: 183 LYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSC 223
+ + VA++ G+++ +G L A++++ D +
Sbjct: 451 -FFFEFCDYNKVAIKV-GGRYLKGDHAGVLKASAETVDPAS 489
Score = 56.3 bits (135), Expect = 3e-09
Identities = 17/145 (11%), Positives = 50/145 (34%), Gaps = 5/145 (3%)
Query: 120 LSFLSSGVDVTANQEEISDHETFQLEFDPSTKRW---YIRTMQDRYWTLETGGGIQASGD 176
L+ + G V A+ + + + LE P +R+ RY + G + +
Sbjct: 24 LTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVTCERE 83
Query: 177 KKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILV 236
+ + +V DG +L++ + L + + + ++ ++ P +
Sbjct: 84 VPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMHPQVN 143
Query: 237 LKCEQG--FVGFKTGANNSLRLECN 259
+ + + + ++ +
Sbjct: 144 IYSVTRKRYAHLSARPADEIAVDRD 168
Score = 41.6 bits (97), Expect = 2e-04
Identities = 35/242 (14%), Positives = 79/242 (32%), Gaps = 30/242 (12%)
Query: 22 LSFLSSGVDVTANQEEISDHETFQLEFDPSTKRW---YIRTMQDRYWTLETGGGMIEEES 78
L+ + G V A+ + + + LE P +R+ RY + G + E
Sbjct: 24 LTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVTCE-- 81
Query: 79 RLFSNPSKVRTVLQYLEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVTANQEEISD 138
+V + D + + F + ++ + +S
Sbjct: 82 ------REVPGPDCRFLIVAH-------DDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSP 128
Query: 139 HETF--QLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKK-SSNALYDLVWQGDGSVA 195
E + + P + + + + + I D ++L L +Q D +
Sbjct: 129 AEKWSVHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQ-DQRYS 187
Query: 196 LRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILV-LKCEQGFVGFKTGANNSL 254
++ + +F+ + G L A + A + L R V + +G +G + +L
Sbjct: 188 VQTADHRFL--RHDGRLVARPEPAT-----GYTLEFRSGKVAFRDCEGRYLAPSGPSGTL 240
Query: 255 RL 256
+
Sbjct: 241 KA 242
>3q7x_A De novo designed beta-trefoil architecture with S primary
structure; beta-terfoil, de novo protein; 1.40A
{Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A
3o4a_A* 3o49_A
Length = 132
Score = 72.7 bits (178), Expect = 3e-16
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
Query: 129 VTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVW 188
V ++ FQ+ + + + T ++ + G + + D+ + +
Sbjct: 27 VDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISP 86
Query: 189 QGDGSVALR-ANNGKFIATKRSGHLYANSDSADDSCRYYFYLIN 231
+G+G V LR G+F+ G + D +D ++
Sbjct: 87 EGNGEVLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISPEG 130
Score = 41.9 bits (98), Expect = 3e-05
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 161 RYWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALRA-NNGKFIATKRSGHLYANSDSA 219
++ + G + + D+ + + +G+G V LR+ G+F+ G + D +
Sbjct: 17 QFLRINPDGTVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVDGTRDRS 76
Query: 220 DDSCRYYFYLINRPILVLK 238
D ++ ++L+
Sbjct: 77 DPGIQFQISPEGNGEVLLR 95
Score = 38.5 bits (89), Expect = 4e-04
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 14 YATVSLFPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGM 73
+T + L G V ++ FQ+ + + + T ++ + G +
Sbjct: 11 RSTETGQFLRINPDG-TVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTV 69
Query: 74 I 74
Sbjct: 70 D 70
Score = 31.9 bits (72), Expect = 0.085
Identities = 8/64 (12%), Positives = 24/64 (37%)
Query: 129 VTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVW 188
V ++ FQ+ + + + T ++ + G + + D+ + +
Sbjct: 69 VDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISP 128
Query: 189 QGDG 192
+G+G
Sbjct: 129 EGNG 132
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy,
FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR
{Mus musculus}
Length = 155
Score = 58.1 bits (140), Expect = 8e-11
Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 115 IYSVPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQAS 174
I+++ + G E S E F ++ +++ +Y + + G +
Sbjct: 37 IHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDSR-IALKSGYGKYLGINSDGLVVGR 95
Query: 175 GDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDS 222
D ++ V+Q DG +AL A+N FI +G + A + +A +
Sbjct: 96 SDAIGPREQWEPVFQ-DGKMALLASNSCFIRCNEAGDIEAKNKTAGEE 142
Score = 49.3 bits (117), Expect = 1e-07
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 7/120 (5%)
Query: 132 NQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVWQGD 191
N EIS T +E D YI + + +TL G + + S + V D
Sbjct: 19 NFGEISG--TIAIEMDKGA---YIHALDNGLFTL--GAPHREVDEGPSPPEQFTAVKLSD 71
Query: 192 GSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGAN 251
+AL++ GK++ G + SD+ ++ + + +L F+ +
Sbjct: 72 SRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGD 131
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo
protein; 2.20A {Homo sapiens}
Length = 143
Score = 50.8 bits (121), Expect = 3e-08
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 162 YWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALR-ANNGKFIATKRSGHLYANSDSAD 220
Y + G + + D+ ++ + + +G+G V L+ G+++ G + D +D
Sbjct: 21 YLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSD 80
Query: 221 DSCRYYFYLINRPILVLKCEQGFVGFKTGANNSLRLECNKAN---YETIQVERADRGVVY 277
++ ++LK + G N ++ + + Q+ G V
Sbjct: 81 THIQFQISPEGNGEVLLKSTET--GQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVL 138
Query: 278 FKG 280
K
Sbjct: 139 LKS 141
>3p6j_A De novo designed beta-trefoil architecture with S primary
structure; de novo protein; 1.35A {Synthetic}
Length = 142
Score = 49.7 bits (118), Expect = 6e-08
Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 129 VTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVW 188
V ++ H FQ+ + + + T +Y + G + + D+ ++ + +
Sbjct: 52 VDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISP 111
Query: 189 QGDGSVALRA-NNGKFIATKRSGHLYANSD 217
+G+G V L++ G+++ G + D
Sbjct: 112 EGNGEVLLKSTETGQYLRINPDGTVDGTRD 141
Score = 35.8 bits (82), Expect = 0.004
Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 169 GGIQASGDKKSSNALYDLVWQGDGSVALR-ANNGKFIATKRSGHLYANSDSADDSCRYYF 227
G + + D+ ++ + + +G+G V L+ G+++ G + D +D ++
Sbjct: 50 GTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQI 109
Query: 228 YLIN 231
Sbjct: 110 SPEG 113
>3p6i_A De novo designed beta-trefoil architecture with S primary
structure; de novo protein; HET: SO4; 1.32A {Synthetic}
PDB: 3ogf_A
Length = 142
Score = 41.2 bits (96), Expect = 7e-05
Identities = 18/122 (14%), Positives = 44/122 (36%), Gaps = 5/122 (4%)
Query: 114 KIYSVPLSFLSSGVDVTANQEEISDHETFQLE--FDPSTKRWYIRTMQDRYWTLETGGGI 171
+++P G V ++ H FQ+ + T +Y + G +
Sbjct: 5 HHFNLPPGNYKKGGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTET--GQYLRINPDGTV 62
Query: 172 QASGDKKSSNALYDLVWQGDGSVALR-ANNGKFIATKRSGHLYANSDSADDSCRYYFYLI 230
+ D+ ++ + + +G+G V L+ G+++ G + D +D ++
Sbjct: 63 DGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPE 122
Query: 231 NR 232
Sbjct: 123 GN 124
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.013
Identities = 34/213 (15%), Positives = 64/213 (30%), Gaps = 46/213 (21%)
Query: 25 LSSGVDVTANQEEISDH-ETFQ-LE-FDPSTKRWYI--RTMQDRYWTLETGGGMIEEESR 79
L++ ++ + N E +++ + F L F PS I + W +I+ +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH---IPTILLS-LIW-----FDVIKSDVM 405
Query: 80 LFSNPSKVRTVLQYLEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVTANQEEISDH 139
+ N ++++ K S I S+ L + A I DH
Sbjct: 406 VVVNKLHKYSLVE-------------KQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 140 ETFQLEFDPSTKRWYIRTMQDRYWTLETG---GGIQASGDKKSSNALY-DLVWQGDGSVA 195
FD I D+Y+ G I+ ++ D +
Sbjct: 453 YNIPKTFDSDDL---IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF------- 502
Query: 196 LRANNGKFIATKRSGHLYANSDSADDSCRYYFY 228
L K + A+ + + FY
Sbjct: 503 LEQ---KIRHDSTA--WNASGSILNTLQQLKFY 530
>3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase,
catalysis, protonation state, AB initio calculations,
substrate bindin; 1.05A {Hevea brasiliensis} SCOP:
c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A
3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A
7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A
1dwp_A ...
Length = 257
Score = 32.3 bits (73), Expect = 0.13
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 14/84 (16%)
Query: 7 SPQENPKYATVSLFPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWT 66
E + A + + Q ++ F E S K+ Y+ T QD +
Sbjct: 161 CGPEEYELAKMLTRK---------GSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFL 211
Query: 67 LETGGGMIEEESRLFSNPSKVRTV 90
E IE P KV V
Sbjct: 212 PEFQLWQIEN-----YKPDKVYKV 230
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid
indole alkaloids, PNAE, hydrolase, serine esterase; HET:
CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Length = 264
Score = 31.1 bits (70), Expect = 0.32
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 35 QEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKVRTVL 91
++++ + F E S KR YI +D+ + +E +E KV+ +
Sbjct: 189 FQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVES-----VGADKVKEIK 240
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB:
1y7i_A* 1y7h_A*
Length = 273
Score = 30.7 bits (69), Expect = 0.43
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 14/85 (16%)
Query: 7 SPQENPKYATVSLFPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWT 66
E+ A+ + P S ++ + + +D E S KR YI +D+
Sbjct: 164 CSPEDLALASSLVRPSSLF---MEDLSKAKYFTD------ERFGSVKRVYIVCTEDKGIP 214
Query: 67 LETGGGMIEEESRLFSNPSKVRTVL 91
E I+ ++ +
Sbjct: 215 EEFQRWQIDN-----IGVTEAIEIK 234
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 30.3 bits (68), Expect = 0.52
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 1 MEHPPPSPQENPKYATVSLFPLSFLSSGVDVTANQ--------EEISDHETFQLEFDPST 52
+PP + PK+ +++ LS + TA E+IS + S
Sbjct: 148 PTNPPTTLIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSV 207
Query: 53 KRWYIRTMQDRYWTLETGGGMIEEESRLFSNPSKVRTV 90
KR +I ++ E MIE+ + P +V+ +
Sbjct: 208 KRVFIVATENDALKKEFLKLMIEK-----NPPDEVKEI 240
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
cyanogenesis; 2.50A {Arabidopsis thaliana}
Length = 258
Score = 30.0 bits (67), Expect = 0.75
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 5 PPSPQENPKYATVSLFPLSFLSSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRY 64
P E+ + A + SF E++S E F E S +R Y+ + +D+
Sbjct: 160 QNCPIEDYELAKMLHRQGSFF---------TEDLSKKEKFSEEGYGSVQRVYVMSSEDKA 210
Query: 65 WTLETGGGMIEEESRLFSNPSKVRTV 90
+ MI+ N SKV +
Sbjct: 211 IPCDFIRWMIDN-----FNVSKVYEI 231
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP:
b.42.5.2 PDB: 1hce_A
Length = 118
Score = 28.5 bits (63), Expect = 1.3
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 191 DGSVALRANNGKFIATKRSGHLYANSDSADD 221
G VAL+ + GK+++ +Y + D
Sbjct: 40 GGKVALKTHCGKYLSIGDHKQVYLSHHLHGD 70
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding
protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A*
3a0e_A*
Length = 110
Score = 27.8 bits (62), Expect = 1.8
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 164 TLETGGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSG 210
+L + + G Y L+ QGD + L + A+ G
Sbjct: 3 SLSSPNSLFT-GHSLEVGPSYRLIMQGDCNFVLYDSGKPVWASNTGG 48
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 27.5 bits (62), Expect = 4.7
Identities = 3/16 (18%), Positives = 10/16 (62%)
Query: 261 ANYETIQVERADRGVV 276
++ +++ E + GV+
Sbjct: 10 QDFPSLRFEPGEHGVL 25
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA,
pseudomon bacterial toxin, siras, antimicrobial protein;
2.20A {Pseudomonas SP} PDB: 3m7j_A*
Length = 276
Score = 27.3 bits (59), Expect = 5.5
Identities = 14/90 (15%), Positives = 25/90 (27%)
Query: 164 TLETGGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSC 223
L + A S N + L+ QGDG++ ++ N + +
Sbjct: 16 VLPAYQTLSAGQYLLSPNQRFKLLLQGDGNLVIQDNGATVWVANEQQPFSSTIPLRNKKA 75
Query: 224 RYYFYLINRPILVLKCEQGFVGFKTGANNS 253
FY+ L + S
Sbjct: 76 PLAFYVQYGAFLDDYSRRRVWLTDNSTFTS 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 7.8
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 24/82 (29%)
Query: 211 HLYANS-------DSADDSCR--YYFYLI----NRPILVLKCEQGFVGFKTGANNSLRLE 257
LY S + AD+ + Y F ++ N P+ + + F G R+
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT------IHF--GGEKGKRI- 1684
Query: 258 CNKANYETIQVERADRGVVYFK 279
+ NY + E G + +
Sbjct: 1685 --RENYSAMIFETIVDGKLKTE 1704
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.401
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,300,915
Number of extensions: 241334
Number of successful extensions: 592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 31
Length of query: 284
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 191
Effective length of database: 4,105,140
Effective search space: 784081740
Effective search space used: 784081740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.1 bits)