RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16240
(284 letters)
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 123
Score = 104 bits (261), Expect = 8e-29
Identities = 46/106 (43%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Query: 126 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYD 185
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+Q++ K+++ +D
Sbjct: 19 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFD 78
Query: 186 LVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLIN 231
+ W+ D + LRA+NGKF+ +K++G L A+ ++A DS + LIN
Sbjct: 79 IEWR-DRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMKLIN 123
Score = 55.3 bits (133), Expect = 2e-10
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 28 GVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMI 74
G+D++ANQ+E +D ETFQLE D TK+ RT +YWTL GG+
Sbjct: 19 GMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQ 65
Score = 35.6 bits (82), Expect = 0.002
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 194 VALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGANNS 253
V L+A N + ++T++ L AN D D + + + F+T
Sbjct: 4 VVLQAANERNVSTRQGMDLSANQDEETDQETFQL--------EIDRDTKKCAFRTHTGKY 55
Query: 254 LRLECNKA 261
L
Sbjct: 56 WTLTATGG 63
Score = 31.8 bits (72), Expect = 0.029
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 31 VTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMI 74
V + + F +E+ +R +R ++ T + G +
Sbjct: 64 VQSTASSKNASCYFDIEW--RDRRITLRASNGKFVTSKKNGQLA 105
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 133
Score = 81.5 bits (201), Expect = 5e-20
Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
Query: 126 GVDVTANQEEISDHETFQLEFDP---STKRWYIRTMQDRYWTLETGGGIQASGDKKSSNA 182
G V A+ + + + LE P + +R+ RY + G + + +
Sbjct: 23 GFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDC 82
Query: 183 LYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRP 233
+ +V DG +L++ + L + + + ++ ++ P
Sbjct: 83 RFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMHP 133
Score = 41.4 bits (97), Expect = 2e-05
Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 32/125 (25%)
Query: 28 GVDVTANQEEISDHETFQLEFDP---STKRWYIRTMQDRYWTLETGGGMI-------EEE 77
G V A+ + + + LE P + +R+ RY + G + +
Sbjct: 23 GFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDC 82
Query: 78 SRLFSNPSKVRTVLQYLEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVTANQEEIS 137
L R LQ + Y + ++ + +S
Sbjct: 83 RFLIVAHDDGRWSLQSEA------HRRYFG----------------GTEDRLSCFAQTVS 120
Query: 138 DHETF 142
E +
Sbjct: 121 PAEKW 125
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 79.8 bits (197), Expect = 1e-19
Identities = 22/104 (21%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 124 SSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNAL 183
+ AN+ S ++ FQLEF+ + I+ +YWT+ + + +SGD +
Sbjct: 17 KVTGTLDANR---SSYDVFQLEFND--GAYNIKDSTGKYWTVGSDSAVTSSGD---TPVD 68
Query: 184 YDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYF 227
+ + VA++ G+++ +G L A++++ D + + +
Sbjct: 69 FFFEFCDYNKVAIKVG-GRYLKGDHAGVLKASAETVDPASLWEY 111
Score = 56.0 bits (135), Expect = 7e-11
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 232 RPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQVERADRGVVYFKGKSAR 284
RPI+V + E GF+G + L+ N+++Y+ Q+E D G K + +
Sbjct: 1 RPIIVFRGEHGFIGCRKVTG---TLDANRSSYDVFQLEFND-GAYNIKDSTGK 49
Score = 41.3 bits (97), Expect = 1e-05
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 26 SSGVDVTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGMIEE 76
+ AN+ S ++ FQLEF+ + I+ +YWT+ + +
Sbjct: 17 KVTGTLDANR---SSYDVFQLEFND--GAYNIKDSTGKYWTVGSDSAVTSS 62
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein
(hisactophilin) {Dictyostelium discoideum [TaxId:
44689]}
Length = 118
Score = 57.6 bits (139), Expect = 3e-11
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 129 VTANQEEISDHETFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVW 188
V + H F +E ++T +Y ++ + S ++L+ L
Sbjct: 21 VKTHHGHHDHHTHFHVENHGGK--VALKTHCGKYLSIGDHKQVYLSHHLHGDHSLFHLEH 78
Query: 189 QGDGSVALRANNGKFIATKRSGHLYANSDSADDS 222
G V+++ ++ +I+ GH+ D+
Sbjct: 79 H-GGKVSIKGHHHHYISADHHGHVSTKEHHDHDT 111
Score = 50.3 bits (120), Expect = 1e-08
Identities = 14/113 (12%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
Query: 155 IRTMQDRYWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYA 214
++ + + E G ++ + + V G VAL+ + GK+++ +Y
Sbjct: 6 FKSHHGHFLSAE-GEAVKTHHGHHDHHTHFH-VENHGGKVALKTHCGKYLSIGDHKQVYL 63
Query: 215 NSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGANNSLRLECNKANYETIQ 267
+ D ++ + + +K G A++ + +++
Sbjct: 64 SHHLHGDHSLFHLE-HHGGKVSIK---GHHHHYISADHHGHVSTK-EHHDHDT 111
Score = 32.5 bits (74), Expect = 0.018
Identities = 10/96 (10%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 192 GSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGAN 251
G+ A ++++G F++ + + D ++ + + ++
Sbjct: 2 GNRAFKSHHGHFLSA-EGEAVKTHHGHHDHHTHFHVENHGGKVALKTHCGKYL----SIG 56
Query: 252 NSLRLECN---KANYETIQVERADRGVVYFKGKSAR 284
+ ++ + ++ +E G V KG
Sbjct: 57 DHKQVYLSHHLHGDHSLFHLEHHG-GKVSIKGHHHH 91
>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 141
Score = 31.3 bits (71), Expect = 0.059
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 139 HETFQLEFDPSTKRWYIRTMQDRYWTLE--TGGGIQASGDKKSSNALYDLVWQGDGSVAL 196
H K Y L G + + D+ + L + G V +
Sbjct: 4 HFNLPPGNYKKPKLLYCSN---GGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYI 60
Query: 197 R-ANNGKFIATKRSGHLYANSDSADD 221
+ G+++A G LY + ++
Sbjct: 61 KSTETGQYLAMDTDGLLYGSQTPNEE 86
>d1q1ua_ b.42.1.1 (A:) Fibrobast growth factor homologous factor 1
(FHF1b, FGF12b) {Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 29.0 bits (65), Expect = 0.33
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 169 GGIQASGDKKSSNALYDLVWQGDGSVALR-ANNGKFIATKRSGHLYANSDSADD 221
G I + D+ S L++L+ G VA++ ++A G+LY++ +
Sbjct: 24 GTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSSDVFTPE 77
>d1gr3a_ b.22.1.1 (A:) Collagen NC1 trimerisation domain {Human
(Homo sapiens), isoform X [TaxId: 9606]}
Length = 132
Score = 28.0 bits (62), Expect = 0.59
Identities = 9/80 (11%), Positives = 28/80 (35%)
Query: 198 ANNGKFIATKRSGHLYANSDSADDSCRYYFYLINRPILVLKCEQGFVGFKTGANNSLRLE 257
G F + ++ + + N ++ ++ G+ A+ S ++
Sbjct: 36 PRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKNGTPVMYTYDEYTKGYLDQASGSAIID 95
Query: 258 CNKANYETIQVERADRGVVY 277
+ + +Q+ A+ +Y
Sbjct: 96 LTENDQVWLQLPNAESNGLY 115
>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 27.1 bits (60), Expect = 1.6
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 169 GGIQASGDKKSSNALYDLVWQGDGS-VALR-ANNGKFIATKRSGHLYANSDSADDSC 223
I A + A + GS V +R A G +I + G L A S+ C
Sbjct: 38 KRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKLIAKSNGKGKDC 94
>d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I
{Thermus aquaticus [TaxId: 271]}
Length = 120
Score = 26.5 bits (58), Expect = 1.8
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 72 GMIEEESRLFSNPSKVRTVL-QYLEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVT 130
GM++ E P + +L QY+E++ QY L ++ + L+ + +
Sbjct: 3 GMLKGEG-----PGPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLV 57
Query: 131 ANQEEISDHETFQLEFDPSTKRWYIRTMQDR 161
+ D T Y +
Sbjct: 58 LTHKTSKDFTTPMAGIPLRAFEAYAERLLKM 88
>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 119
Score = 26.2 bits (58), Expect = 2.4
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 141 TFQLEFDPSTKRWYIRTMQDRYWTLETGGGIQASGDKKSSNALYDLVWQGDGSVALRANN 200
L F +R+ ++T R+ L G + + Y L ++ G VA R
Sbjct: 36 LITLAF--QDQRYSVQTADHRF--LRHDGRLV---ARPEPATGYTLEFRS-GKVAFRDCE 87
Query: 201 GKFIAT 206
G+++A
Sbjct: 88 GRYLAP 93
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla
campanulata) [TaxId: 81759]}
Length = 119
Score = 26.1 bits (57), Expect = 2.9
Identities = 9/50 (18%), Positives = 13/50 (26%)
Query: 179 SSNALYDLVWQGDGSVALRANNGKFIATKRSGHLYANSDSADDSCRYYFY 228
+Y + Q D ++ L NN AT G
Sbjct: 27 FGTHVYRFIMQTDCNLVLYDNNNPIWATNTGGLGNGCRAVLQPDGVLVVI 76
>d1j0sa_ b.42.1.2 (A:) Interleukin-18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 157
Score = 25.9 bits (57), Expect = 4.0
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 94 LEVKIQYFYGLYCTDKPSKFKIYSVPLSFLSSGVDVTANQEEISDHETFQLEFDPS 149
+ VK + L C +K FK + P + + D+ Q + H+ +++F+ S
Sbjct: 64 ISVKCEKISTLSCENKIISFKEMNPPDNIKDTKSDIIFFQRSVPGHDN-KMQFESS 118
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 136
Score = 25.5 bits (56), Expect = 4.4
Identities = 6/51 (11%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 177 KKSSNALYDLVWQGDGSVALR-ANNGKFIATKRSGHLYANSDSADDSCRYY 226
+S+++L ++ +VA++ ++ +++ G + +++ C +
Sbjct: 33 GQSAHSLLEIKAVALRTVAIKGVHSVRYLCMGADGKMQGLLQYSEEDCAFE 83
>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 218
Score = 25.2 bits (55), Expect = 8.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 145 EFDPSTKRWY--IRTMQDRYWTLETGGGIQASGDKKSSN 181
E P TK+ Y +R + D +W +E G +G K SN
Sbjct: 4 ELSPGTKKVYTQVRYLDDYHWEIE---GSTITGIHKKSN 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.401
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,068,160
Number of extensions: 48040
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 26
Length of query: 284
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,254,276
Effective search space: 250855200
Effective search space used: 250855200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)