BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16241
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H3S4|TPK1_HUMAN Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK1 PE=1 SV=1
Length = 243
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 98/164 (59%), Gaps = 13/164 (7%)
Query: 27 YWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKR-----EKIDYL 81
+ P+ + GDFDS+ + G +++ TPDQ +TDF K + + K+ K+D +
Sbjct: 63 FLPEFINGDFDSIRPEVREYYATKGCELISTPDQDHTDFTKCLKMLQKKIEEKDLKVDVI 122
Query: 82 ISIVEFNGRLDHCMSNINTLYKSS----LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTS 137
+++ GR D M+++NTL++++ PI ++ + + ++L+ G HR+H++ G
Sbjct: 123 VTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLLQP--GKHRLHVDTGMEG 180
Query: 138 GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYE 181
GLIPVG P QV +TGLKWNL N LAFG +VS+SNTY+
Sbjct: 181 --DWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYD 222
>sp|Q9R0M5|TPK1_MOUSE Thiamin pyrophosphokinase 1 OS=Mus musculus GN=Tpk1 PE=1 SV=1
Length = 243
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 100/164 (60%), Gaps = 13/164 (7%)
Query: 27 YWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVM----EITKRE-KIDYL 81
+ P+ V+GDFDS+ + G D++ TPDQ +TDF K + +I ++E ++D +
Sbjct: 63 FLPEFVSGDFDSIRPEVKEYYTKKGCDLISTPDQDHTDFTKCLQVLQRKIEEKELQVDVI 122
Query: 82 ISIVEFNGRLDHCMSNINTLYKSS----LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTS 137
+++ GR D M+++NTL++++ +PI ++ + ++L+ G HR+H++ G
Sbjct: 123 VTLGGLGGRFDQIMASVNTLFQATHITPVPIIIIQKDSLIYLLQP--GKHRLHVDTGMEG 180
Query: 138 GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYE 181
GLIPVG P QV +TGLKWNL N L FG +VS+SNTY+
Sbjct: 181 --SWCGLIPVGQPCNQVTTTGLKWNLTNDVLGFGTLVSTSNTYD 222
>sp|Q5E9T4|TPK1_BOVIN Thiamin pyrophosphokinase 1 OS=Bos taurus GN=TPK1 PE=2 SV=1
Length = 243
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 100/165 (60%), Gaps = 13/165 (7%)
Query: 27 YWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKR--EK---IDYL 81
+ P+ ++GDFDS+ + G +I+ TPDQ +TDF K + + K+ EK +D +
Sbjct: 63 FLPEFISGDFDSIRPEVREHYAIKGCEIISTPDQDHTDFTKCLEVLQKKIEEKDLQVDMI 122
Query: 82 ISIVEFNGRLDHCMSNINTLYKS----SLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTS 137
+++ GR D M++++TL+++ SLP+ ++ + + ++L+ G H++H++ G
Sbjct: 123 VTLGGLAGRFDQIMASVSTLFQAPQITSLPVIIIQEESLIYLLQP--GKHKLHVDTGMEG 180
Query: 138 GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYEN 182
GLIPVG P QV +TGLKWNL + L FG +VS+SNTY+
Sbjct: 181 --DWCGLIPVGQPCNQVTTTGLKWNLTHQMLGFGTLVSTSNTYDG 223
>sp|P41888|TNR3_SCHPO Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=tnr3 PE=4 SV=1
Length = 569
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 18/189 (9%)
Query: 2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQS 61
IR D G ++ N D +L PD V GDFDS++ + + +G +IV P Q+
Sbjct: 378 IRVCADGGANQL------RNYDSSLK-PDYVVGDFDSLTDETKAYYKEMGVNIVFDPCQN 430
Query: 62 YTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSL-----PIYLLSAKYM 116
TDF K +I K ID + + GR+DH + N+N L+ ++ ++LL+ +
Sbjct: 431 TTDFMKC-HKIIKEHGIDTIFVLCGMGGRVDHAIGNLNHLFWAASISEKNEVFLLTELNV 489
Query: 117 SWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSS 176
S +L+ H N G G L+PVG V ++GL+WN+ + FGG+VSS
Sbjct: 490 STLLQPGINHVDCHDNIGLHCG-----LLPVGQSVYVKKTSGLEWNIEDRICQFGGLVSS 544
Query: 177 SNTYENETT 185
N T
Sbjct: 545 CNVVTKATV 553
>sp|P30636|TPK1_CAEEL Thiamin pyrophosphokinase 1 OS=Caenorhabditis elegans GN=tpk-1 PE=1
SV=3
Length = 243
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 16/159 (10%)
Query: 28 WPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKRE-----KIDYLI 82
WP ++ GDFDS++ + + +V PDQ YTD K+V +++ + + ++
Sbjct: 62 WPHIICGDFDSINKQIDTK----NAKVVHLPDQDYTDLSKSVQWCLEQKTLTSWEFENIV 117
Query: 83 SIVEFNGRLDHCMSNINTLYK---SSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGK 139
+ NGR DH MS +++L + S P+ +L ++ + VL G + +N T+
Sbjct: 118 VLGGLNGRFDHTMSTLSSLIRFVDSQTPVIVLDSRNL--VLAVPTGDSNLDVNLEMTT-- 173
Query: 140 KTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSN 178
K G+IP+ V S GLK+ + N L FG ++S+SN
Sbjct: 174 KMCGIIPIVQKETIVSSIGLKYEMENLALEFGKLISTSN 212
>sp|O34664|THIN_BACSU Thiamine pyrophosphokinase OS=Bacillus subtilis (strain 168)
GN=thiN PE=1 SV=1
Length = 214
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 13/150 (8%)
Query: 34 GDFDSVSSNSMGRFLALGSDI-VPTPDQSYTDFQKAV-MEITKREKIDYLISIVEFNGRL 91
GDFDS++ R + V ++ TD A+ + K+ I + I GR
Sbjct: 50 GDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGIT--GGRA 107
Query: 92 DHCMSNINTLYK---SSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVG 148
DH + NI LYK +++ I L+ + + + G + I + K+ + IP
Sbjct: 108 DHFLGNIQLLYKGVKTNIKIRLIDKQ--NHIQMFPPGEYDIEKD----ENKRYISFIPFS 161
Query: 149 SPVQQVYSTGLKWNLNNHTLAFGGMVSSSN 178
+ ++ TG K+ LNN + G + SN
Sbjct: 162 EDIHELTLTGFKYPLNNCHITLGSTLCISN 191
>sp|P35202|THI80_YEAST Thiamine pyrophosphokinase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=THI80 PE=1 SV=1
Length = 319
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 81/229 (35%), Gaps = 52/229 (22%)
Query: 2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQS 61
++ D +R +L+ Y P+ + GD DS+S + I+ Q
Sbjct: 64 LKVCADGAANRLYDYLDDDETLRIKYLPNYIIGDLDSLSEKVYKYYRKNKVTIIKQTTQY 123
Query: 62 YTDFQKAV---------------------------MEITKREKIDY-------------- 80
TDF K V +E+ K Y
Sbjct: 124 STDFTKCVNLISLHFNSPEFRSLISNKDNLQSNHGIELEKGIHTLYNTMTESLVFSKVTP 183
Query: 81 --LISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMS-----WVLRANAGLHRIHLNP 133
L+++ GR D + +I LY S YM+ ++++ N L I +P
Sbjct: 184 ISLLALGGIGGRFDQTVHSITQLYTLSENASYFKLCYMTPTDLIFLIKKNGTL--IEYDP 241
Query: 134 GF-TSGKKTLGLIPVGSPVQQVYSTGLKWNLNN-HTLAFGGMVSSSNTY 180
F + GL+P+G + GLKW++ N T G VSSSN +
Sbjct: 242 QFRNTCIGNCGLLPIGEATLVKETRGLKWDVKNWPTSVVTGRVSSSNRF 290
>sp|A6LXU8|ALF1_CLOB8 Fructose-bisphosphate aldolase class 1 OS=Clostridium beijerinckii
(strain ATCC 51743 / NCIMB 8052) GN=fda PE=3 SV=1
Length = 295
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 77 KIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFT 136
K+D ++ +E +L +SN++ L K ++ + K S + ANA ++ +N F
Sbjct: 102 KVDKGLTEIENGVQLMKPISNLDDLLKHAVEKNIFGTKMRSVIKEANAKGIKMLVNQQFE 161
Query: 137 SGKKTL--GLIPVGSPVQQVYST 157
GK+ + GL+P+ P ++ST
Sbjct: 162 IGKQIVEAGLVPIIEPEVDIHST 184
>sp|A9N8L3|DDL_COXBR D-alanine--D-alanine ligase OS=Coxiella burnetii (strain RSA 331 /
Henzerling II) GN=ddl PE=3 SV=1
Length = 372
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 46 RFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSS 105
+ ++LGS + P ++ T+F KAV E+ + + D L+ GR C N K+S
Sbjct: 186 KAVSLGSSVATLPVKTETEFTKAVKEVFRYD--DRLMVEPRIRGREIECAVLGNGAPKAS 243
Query: 106 LP 107
LP
Sbjct: 244 LP 245
>sp|Q83BZ9|DDL_COXBU D-alanine--D-alanine ligase OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=ddl PE=1 SV=1
Length = 372
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 46 RFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSS 105
+ ++LGS + P ++ T+F KAV E+ + + D L+ GR C N K+S
Sbjct: 186 KAVSLGSSVATLPVKTETEFTKAVKEVFRYD--DRLMVEPRIRGREIECAVLGNGAPKAS 243
Query: 106 LP--------IYLLSAKYM 116
LP Y AKY+
Sbjct: 244 LPGEIIPHHDYYSYDAKYL 262
>sp|A9KGD2|DDL_COXBN D-alanine--D-alanine ligase OS=Coxiella burnetii (strain Dugway
5J108-111) GN=ddl PE=3 SV=1
Length = 372
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 46 RFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSS 105
+ ++LGS + P ++ T+F KAV E+ + + D L+ GR C N K+S
Sbjct: 186 KAVSLGSSVATLPVKTETEFTKAVKEVFRYD--DRLMVEPRIRGREIECAVLGNGAPKAS 243
Query: 106 LP--------IYLLSAKYM 116
LP Y AKY+
Sbjct: 244 LPGEIIPHHDYYSYDAKYL 262
>sp|B6J7Z1|DDL_COXB1 D-alanine--D-alanine ligase OS=Coxiella burnetii (strain CbuK_Q154)
GN=ddl PE=3 SV=1
Length = 372
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 46 RFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSS 105
+ ++LGS + P ++ T+F KAV E+ + + D L+ GR C N K+S
Sbjct: 186 KAVSLGSSVATLPVKTETEFTKAVKEVFRYD--DRLMVEPRIRGREIECAVLGNGAPKAS 243
Query: 106 LP 107
LP
Sbjct: 244 LP 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,421,361
Number of Sequences: 539616
Number of extensions: 3036442
Number of successful extensions: 5957
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5940
Number of HSP's gapped (non-prelim): 14
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)