Query psy16241
Match_columns 186
No_of_seqs 109 out of 1024
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 16:25:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01378 thi_PPkinase thiamin 100.0 1.1E-52 2.4E-57 340.8 20.8 167 2-184 20-190 (203)
2 PLN02714 thiamin pyrophosphoki 100.0 6.2E-52 1.3E-56 342.0 20.8 181 1-184 21-214 (229)
3 cd07995 TPK Thiamine pyrophosp 100.0 8.5E-52 1.8E-56 336.4 21.0 167 1-184 23-193 (208)
4 KOG3153|consensus 100.0 1.6E-47 3.4E-52 308.4 13.9 177 1-183 48-232 (250)
5 COG1564 THI80 Thiamine pyropho 100.0 1.7E-46 3.6E-51 304.5 18.6 163 2-183 26-192 (212)
6 PF04263 TPK_catalytic: Thiami 100.0 2.2E-36 4.7E-41 227.6 11.2 103 1-112 17-122 (123)
7 PF04265 TPK_B1_binding: Thiam 99.6 2.4E-15 5.3E-20 101.9 4.3 57 125-184 1-57 (68)
8 COG4825 Uncharacterized membra 98.7 4.1E-08 8.9E-13 83.2 7.8 81 2-95 209-309 (395)
9 COG1634 Uncharacterized Rossma 98.0 2.9E-05 6.4E-10 63.8 7.9 77 2-89 75-183 (232)
10 PF01973 MAF_flag10: Protein o 94.6 0.18 3.9E-06 39.2 7.2 27 2-38 51-77 (170)
11 cd00886 MogA_MoaB MogA_MoaB fa 92.4 0.5 1.1E-05 36.3 6.3 66 36-101 18-86 (152)
12 smart00852 MoCF_biosynth Proba 91.3 0.83 1.8E-05 34.1 6.3 65 36-102 16-83 (135)
13 cd00758 MoCF_BD MoCF_BD: molyb 90.6 2 4.3E-05 32.1 7.8 65 36-102 17-84 (133)
14 TIGR00177 molyb_syn molybdenum 90.4 0.82 1.8E-05 34.8 5.6 65 36-102 25-92 (144)
15 TIGR02667 moaB_proteo molybden 89.3 1.4 2.9E-05 34.5 6.2 65 36-101 20-88 (163)
16 PF00994 MoCF_biosynth: Probab 88.5 0.61 1.3E-05 35.3 3.6 65 36-103 15-83 (144)
17 cd00885 cinA Competence-damage 87.9 1.4 3E-05 34.7 5.4 66 36-104 17-86 (170)
18 cd00887 MoeA MoeA family. Memb 82.6 8.9 0.00019 34.1 8.6 63 37-101 194-259 (394)
19 PRK03670 competence damage-ind 81.1 4.2 9.1E-05 34.2 5.6 66 37-104 19-88 (252)
20 PRK08621 galactose-6-phosphate 80.9 13 0.00027 28.7 7.7 47 42-88 17-66 (142)
21 COG4558 ChuT ABC-type hemin tr 79.7 2.8 6.1E-05 36.0 4.1 39 26-64 97-135 (300)
22 COG1058 CinA Predicted nucleot 79.6 4.8 0.0001 34.0 5.5 51 45-98 28-82 (255)
23 PRK12613 galactose-6-phosphate 78.2 17 0.00036 28.0 7.7 48 42-89 17-67 (141)
24 TIGR02133 RPI_actino ribose 5- 76.8 19 0.00042 27.8 7.7 47 42-88 17-69 (148)
25 PF02502 LacAB_rpiB: Ribose/Ga 73.1 16 0.00035 27.9 6.4 47 42-88 16-67 (140)
26 PRK01215 competence damage-ind 72.8 12 0.00025 31.7 6.1 63 37-102 22-88 (264)
27 PRK03604 moaC bifunctional mol 72.5 7.7 0.00017 33.7 5.0 70 31-102 161-241 (312)
28 TIGR01118 lacA galactose-6-pho 72.4 30 0.00065 26.6 7.7 47 42-88 17-66 (141)
29 PRK12615 galactose-6-phosphate 72.2 27 0.00059 27.7 7.7 47 42-88 17-68 (171)
30 TIGR01120 rpiB ribose 5-phosph 71.8 32 0.0007 26.4 7.8 47 42-88 16-67 (143)
31 cd03522 MoeA_like MoeA_like. T 70.4 9 0.0002 33.2 5.0 65 36-101 177-244 (312)
32 TIGR01119 lacB galactose-6-pho 70.2 31 0.00068 27.4 7.6 47 42-88 17-68 (171)
33 COG0698 RpiB Ribose 5-phosphat 69.8 32 0.00069 26.8 7.4 49 41-89 16-71 (151)
34 PRK08622 galactose-6-phosphate 68.7 35 0.00077 27.1 7.6 47 42-88 17-68 (171)
35 TIGR00200 cinA_nterm competenc 68.2 13 0.00029 33.4 5.7 63 36-101 18-84 (413)
36 PRK14498 putative molybdopteri 66.8 28 0.0006 32.9 7.8 64 36-101 211-277 (633)
37 PRK05571 ribose-5-phosphate is 66.0 44 0.00094 25.9 7.5 47 42-88 17-69 (148)
38 PRK14491 putative bifunctional 65.0 34 0.00074 32.3 8.0 61 37-99 393-456 (597)
39 PRK14690 molybdopterin biosynt 64.7 35 0.00075 30.8 7.7 63 37-101 219-284 (419)
40 PTZ00215 ribose 5-phosphate is 64.7 46 0.00099 25.9 7.4 47 42-88 19-72 (151)
41 PRK09417 mogA molybdenum cofac 63.9 20 0.00044 28.9 5.5 66 37-103 22-93 (193)
42 PRK10680 molybdopterin biosynt 62.3 38 0.00082 30.5 7.5 63 37-101 203-268 (411)
43 PRK00549 competence damage-ind 61.7 22 0.00047 32.0 5.9 61 37-100 19-83 (414)
44 cd01141 TroA_d Periplasmic bin 61.2 28 0.00061 26.7 5.8 49 26-74 67-116 (186)
45 COG0303 MoeA Molybdopterin bio 60.9 25 0.00054 31.7 6.1 62 36-99 201-265 (404)
46 PRK14497 putative molybdopteri 60.8 33 0.00072 32.1 7.0 63 37-101 205-270 (546)
47 COG2604 Uncharacterized protei 59.8 6.7 0.00015 36.9 2.3 24 2-34 251-274 (594)
48 COG0412 Dienelactone hydrolase 59.5 9.4 0.0002 31.4 2.9 64 26-91 57-125 (236)
49 PRK03673 hypothetical protein; 56.5 23 0.00049 31.8 5.0 63 37-102 20-86 (396)
50 PRK03379 vitamin B12-transport 55.9 34 0.00074 28.2 5.8 46 26-71 70-115 (260)
51 PF06057 VirJ: Bacterial virul 53.3 22 0.00047 28.8 4.0 37 56-93 45-81 (192)
52 PRK13347 coproporphyrinogen II 53.0 1.4E+02 0.003 27.0 9.6 71 34-105 145-232 (453)
53 PLN02699 Bifunctional molybdop 52.4 26 0.00057 33.5 5.0 62 37-99 208-272 (659)
54 cd00382 beta_CA Carbonic anhyd 51.4 34 0.00073 25.1 4.5 57 31-88 6-68 (119)
55 PRK08007 para-aminobenzoate sy 51.3 43 0.00093 26.4 5.4 57 31-93 3-59 (187)
56 PF13344 Hydrolase_6: Haloacid 51.3 80 0.0017 22.3 6.3 74 6-88 16-90 (101)
57 cd00883 beta_CA_cladeA Carboni 49.9 24 0.00052 28.0 3.7 62 26-88 22-90 (182)
58 cd00884 beta_CA_cladeB Carboni 49.0 27 0.00058 28.0 3.9 61 26-87 23-95 (190)
59 PLN02335 anthranilate synthase 48.7 38 0.00083 27.6 4.9 53 31-90 22-75 (222)
60 KOG3849|consensus 48.0 28 0.0006 30.1 3.9 54 31-104 304-359 (386)
61 PF00484 Pro_CA: Carbonic anhy 47.3 37 0.0008 25.6 4.3 57 31-88 2-64 (153)
62 PF12367 PFO_beta_C: Pyruvate 46.2 34 0.00073 22.9 3.4 30 42-74 8-38 (67)
63 TIGR00689 rpiB_lacA_lacB sugar 46.1 53 0.0012 25.3 5.0 49 41-89 14-68 (144)
64 COG2374 Predicted extracellula 45.4 38 0.00083 32.9 4.8 72 27-112 674-747 (798)
65 PRK07379 coproporphyrinogen II 45.4 1.5E+02 0.0034 26.2 8.6 71 34-105 108-195 (400)
66 cd03378 beta_CA_cladeC Carboni 44.5 52 0.0011 25.5 4.8 62 26-88 36-101 (154)
67 KOG2371|consensus 44.5 45 0.00097 29.8 4.8 59 32-95 211-273 (411)
68 TIGR01508 rib_reduct_arch 2,5- 44.1 68 0.0015 25.7 5.6 44 41-86 102-145 (210)
69 PRK05628 coproporphyrinogen II 43.5 1.9E+02 0.0042 25.2 8.8 71 34-105 101-188 (375)
70 COG0288 CynT Carbonic anhydras 42.9 52 0.0011 26.8 4.7 61 26-88 33-101 (207)
71 PRK05904 coproporphyrinogen II 42.7 2.3E+02 0.005 24.7 9.3 73 32-105 94-183 (353)
72 PRK08207 coproporphyrinogen II 41.7 2.6E+02 0.0055 25.8 9.6 72 33-105 261-349 (488)
73 PRK08208 coproporphyrinogen II 41.4 2E+02 0.0044 25.7 8.7 71 34-105 134-221 (430)
74 cd06167 LabA_like LabA_like pr 41.2 95 0.0021 22.9 5.7 63 27-89 39-111 (149)
75 KOG4357|consensus 40.2 20 0.00044 27.2 1.8 47 106-164 106-152 (164)
76 cd01144 BtuF Cobalamin binding 40.0 69 0.0015 25.6 5.1 32 26-57 55-86 (245)
77 PRK15219 carbonic anhydrase; P 40.0 51 0.0011 27.6 4.4 62 26-88 87-152 (245)
78 COG1587 HemD Uroporphyrinogen- 39.4 93 0.002 25.5 5.9 55 40-95 86-142 (248)
79 PRK06294 coproporphyrinogen II 39.4 2.5E+02 0.0055 24.5 8.9 72 33-105 95-183 (370)
80 KOG1252|consensus 39.4 1.1E+02 0.0023 27.3 6.3 82 36-121 135-255 (362)
81 PF13271 DUF4062: Domain of un 39.2 47 0.001 22.6 3.4 53 33-90 8-63 (83)
82 COG1731 Archaeal riboflavin sy 38.8 76 0.0016 24.4 4.7 55 35-93 15-73 (154)
83 cd08181 PPD-like 1,3-propanedi 38.5 93 0.002 27.1 6.0 65 28-94 26-99 (357)
84 PRK12595 bifunctional 3-deoxy- 37.9 2.8E+02 0.006 24.5 8.9 83 27-110 201-292 (360)
85 PF01497 Peripla_BP_2: Peripla 37.8 79 0.0017 24.9 5.1 49 26-74 58-107 (238)
86 cd01143 YvrC Periplasmic bindi 37.5 1.1E+02 0.0023 23.4 5.6 48 26-74 58-106 (195)
87 PRK05660 HemN family oxidoredu 37.4 2.9E+02 0.0062 24.3 9.5 72 33-105 99-187 (378)
88 PF04723 GRDA: Glycine reducta 37.4 1.1E+02 0.0024 23.6 5.4 57 30-86 8-75 (150)
89 cd08186 Fe-ADH8 Iron-containin 37.0 1.1E+02 0.0024 26.9 6.3 66 27-94 26-100 (383)
90 PLN02154 carbonic anhydrase 37.0 45 0.00097 28.8 3.6 62 25-87 103-174 (290)
91 cd08551 Fe-ADH iron-containing 36.9 1.6E+02 0.0034 25.6 7.2 59 27-86 23-89 (370)
92 PRK11914 diacylglycerol kinase 36.8 65 0.0014 27.2 4.6 47 42-89 30-76 (306)
93 PRK06455 riboflavin synthase; 36.6 86 0.0019 24.5 4.8 50 41-93 18-71 (155)
94 PF00532 Peripla_BP_1: Peripla 36.5 1.5E+02 0.0032 24.6 6.7 64 45-114 25-88 (279)
95 PRK08446 coproporphyrinogen II 36.5 2.8E+02 0.0061 24.0 8.7 72 33-105 90-178 (350)
96 cd03379 beta_CA_cladeD Carboni 36.3 73 0.0016 24.0 4.4 56 31-87 6-64 (142)
97 KOG3043|consensus 36.0 91 0.002 26.1 5.1 66 25-97 69-139 (242)
98 COG1504 Uncharacterized conser 35.3 82 0.0018 23.4 4.2 46 31-82 65-114 (121)
99 COG1985 RibD Pyrimidine reduct 34.9 77 0.0017 25.9 4.6 53 29-86 99-151 (218)
100 PRK09860 putative alcohol dehy 34.6 1.8E+02 0.0039 25.6 7.2 66 26-94 30-104 (383)
101 PRK06774 para-aminobenzoate sy 34.5 91 0.002 24.4 4.9 56 31-92 3-58 (191)
102 TIGR00566 trpG_papA glutamine 34.4 92 0.002 24.5 4.9 53 31-89 3-55 (188)
103 PRK13057 putative lipid kinase 34.2 78 0.0017 26.5 4.7 47 40-88 15-61 (287)
104 PRK10624 L-1,2-propanediol oxi 33.8 1.7E+02 0.0036 25.8 6.9 65 26-94 29-103 (382)
105 TIGR00147 lipid kinase, YegS/R 33.7 83 0.0018 26.2 4.8 47 42-89 23-69 (293)
106 PRK05625 5-amino-6-(5-phosphor 32.9 1.9E+02 0.0042 23.0 6.6 44 41-86 106-149 (217)
107 PRK07649 para-aminobenzoate/an 32.6 98 0.0021 24.6 4.8 53 31-89 3-55 (195)
108 PRK10437 carbonic anhydrase; P 32.3 73 0.0016 26.3 4.0 61 26-87 32-99 (220)
109 COG0299 PurN Folate-dependent 32.3 1.3E+02 0.0027 24.6 5.3 56 29-86 30-88 (200)
110 PF10087 DUF2325: Uncharacteri 31.8 99 0.0021 21.5 4.2 77 31-112 3-82 (97)
111 PRK13265 glycine/sarcosine/bet 31.4 1.5E+02 0.0033 22.9 5.3 58 29-86 8-76 (154)
112 PF01884 PcrB: PcrB family; I 31.4 1.2E+02 0.0025 25.3 5.1 53 53-110 10-64 (230)
113 PLN03006 carbonate dehydratase 31.1 53 0.0012 28.5 3.1 62 25-87 109-180 (301)
114 TIGR03659 IsdE heme ABC transp 30.2 1.4E+02 0.003 24.8 5.6 31 26-57 89-119 (289)
115 TIGR02530 flg_new flagellar op 30.0 70 0.0015 23.0 3.1 41 39-83 17-57 (96)
116 TIGR02638 lactal_redase lactal 29.5 2.4E+02 0.0051 24.8 7.1 66 26-94 28-102 (379)
117 TIGR00538 hemN oxygen-independ 29.4 4.2E+02 0.0092 23.8 10.1 73 32-105 142-231 (455)
118 PF00885 DMRL_synthase: 6,7-di 29.3 1.3E+02 0.0027 23.1 4.7 51 42-94 24-80 (144)
119 PRK15454 ethanol dehydrogenase 28.8 2.3E+02 0.0051 25.1 7.0 66 26-94 48-122 (395)
120 COG0521 MoaB Molybdopterin bio 28.6 1.1E+02 0.0025 24.2 4.4 60 34-95 22-86 (169)
121 cd01567 NAPRTase_PncB Nicotina 28.5 31 0.00066 30.0 1.3 47 26-74 266-314 (343)
122 PF00465 Fe-ADH: Iron-containi 28.4 1.3E+02 0.0029 26.0 5.3 63 26-93 22-93 (366)
123 PF05706 CDKN3: Cyclin-depende 28.4 1.4E+02 0.0029 23.8 4.8 30 42-71 91-122 (168)
124 cd01149 HutB Hemin binding pro 28.2 1.8E+02 0.004 23.0 5.8 33 26-58 56-88 (235)
125 PF12000 Glyco_trans_4_3: Gkyc 28.0 45 0.00097 26.4 2.0 10 26-35 64-73 (171)
126 COG1488 PncB Nicotinic acid ph 27.9 33 0.00072 30.9 1.4 59 24-86 264-322 (405)
127 TIGR03702 lip_kinase_YegS lipi 27.2 1.3E+02 0.0027 25.3 4.8 46 42-89 18-64 (293)
128 PRK13337 putative lipid kinase 27.1 1.3E+02 0.0027 25.5 4.8 47 42-89 23-69 (304)
129 PF04273 DUF442: Putative phos 26.7 1.6E+02 0.0035 21.3 4.7 48 45-93 51-101 (110)
130 cd08190 HOT Hydroxyacid-oxoaci 26.3 3.2E+02 0.0068 24.4 7.4 66 26-93 22-95 (414)
131 COG3494 Uncharacterized protei 26.3 1.7E+02 0.0037 25.0 5.3 28 64-92 56-83 (279)
132 cd08172 GlyDH-like1 Glycerol d 25.5 79 0.0017 27.3 3.3 80 4-93 6-91 (347)
133 PRK09534 btuF corrinoid ABC tr 25.4 1.9E+02 0.0041 25.2 5.7 32 26-58 117-148 (359)
134 cd01147 HemV-2 Metal binding p 25.4 1.6E+02 0.0035 23.6 5.0 47 26-72 72-120 (262)
135 PF05735 TSP_C: Thrombospondin 25.3 1.8E+02 0.0039 23.7 5.1 50 106-166 150-199 (201)
136 cd08185 Fe-ADH1 Iron-containin 25.1 1.9E+02 0.0042 25.3 5.8 64 29-94 27-99 (380)
137 cd08193 HVD 5-hydroxyvalerate 24.8 1.7E+02 0.0036 25.6 5.3 51 41-94 44-99 (376)
138 PRK06267 hypothetical protein; 24.8 4.6E+02 0.01 22.8 9.0 62 33-105 132-195 (350)
139 PLN03019 carbonic anhydrase 24.4 85 0.0018 27.6 3.2 62 25-87 151-223 (330)
140 PLN02699 Bifunctional molybdop 24.2 2.7E+02 0.0058 26.8 6.8 61 40-101 480-549 (659)
141 TIGR00227 ribD_Cterm riboflavi 24.0 2.4E+02 0.0052 22.2 5.7 40 45-86 111-150 (216)
142 PRK09249 coproporphyrinogen II 24.0 5.3E+02 0.012 23.2 9.5 72 33-105 143-231 (453)
143 TIGR00539 hemN_rel putative ox 23.6 4.8E+02 0.01 22.5 9.3 71 34-105 93-180 (360)
144 COG1751 Uncharacterized conser 23.4 1.4E+02 0.0031 23.6 4.0 32 57-89 6-39 (186)
145 PRK13054 lipid kinase; Reviewe 23.4 1.7E+02 0.0037 24.6 4.9 46 43-89 23-68 (300)
146 cd08182 HEPD Hydroxyethylphosp 23.4 2.9E+02 0.0064 23.9 6.5 63 28-93 24-92 (367)
147 cd00861 ProRS_anticodon_short 23.3 1.4E+02 0.0029 20.0 3.6 21 64-85 42-62 (94)
148 cd08179 NADPH_BDH NADPH-depend 23.0 4.2E+02 0.0091 23.1 7.5 63 30-94 26-97 (375)
149 PF04244 DPRP: Deoxyribodipyri 22.8 1.5E+02 0.0033 24.3 4.4 68 46-115 57-127 (224)
150 PRK03202 6-phosphofructokinase 22.7 4.4E+02 0.0094 22.9 7.4 61 39-105 52-116 (320)
151 cd01148 TroA_a Metal binding p 22.4 1.7E+02 0.0036 24.0 4.6 34 26-59 77-114 (284)
152 PRK08857 para-aminobenzoate sy 22.2 2.3E+02 0.0049 22.2 5.1 53 31-89 3-55 (193)
153 COG3946 VirJ Type IV secretory 22.1 1.5E+02 0.0033 27.1 4.4 56 37-93 273-339 (456)
154 PF07859 Abhydrolase_3: alpha/ 21.9 73 0.0016 24.6 2.2 65 33-103 11-89 (211)
155 COG1597 LCB5 Sphingosine kinas 21.8 1.3E+02 0.0028 25.7 3.9 53 34-88 16-69 (301)
156 PF06506 PrpR_N: Propionate ca 21.6 1.7E+02 0.0037 22.6 4.3 55 26-81 75-129 (176)
157 PRK09058 coproporphyrinogen II 21.6 6E+02 0.013 22.9 9.6 73 32-105 154-243 (449)
158 COG3510 CmcI Cephalosporin hyd 21.5 4.7E+02 0.01 21.6 7.8 53 53-105 118-170 (237)
159 cd08189 Fe-ADH5 Iron-containin 21.3 4E+02 0.0086 23.2 7.0 66 26-94 25-99 (374)
160 PLN03014 carbonic anhydrase 21.1 1.1E+02 0.0025 27.0 3.4 62 25-87 156-228 (347)
161 cd07020 Clp_protease_NfeD_1 No 21.0 4.1E+02 0.0088 20.7 6.7 48 61-109 14-62 (187)
162 PF03102 NeuB: NeuB family; I 20.9 3.5E+02 0.0077 22.5 6.2 61 28-89 90-151 (241)
163 COG1433 Uncharacterized conser 20.8 1.6E+02 0.0034 22.0 3.7 33 39-74 74-106 (121)
164 PRK05799 coproporphyrinogen II 20.8 5.6E+02 0.012 22.2 8.9 72 33-105 91-179 (374)
165 PRK13059 putative lipid kinase 20.7 2.1E+02 0.0045 24.1 4.9 45 42-89 23-68 (295)
166 COG1454 EutG Alcohol dehydroge 20.7 2.4E+02 0.0051 25.3 5.4 66 26-93 28-101 (377)
167 TIGR02634 xylF D-xylose ABC tr 20.4 3.7E+02 0.0081 22.1 6.4 72 38-113 15-87 (302)
168 cd01743 GATase1_Anthranilate_S 20.3 2.3E+02 0.0049 21.9 4.7 52 32-90 3-55 (184)
169 PRK10444 UMP phosphatase; Prov 20.3 2.8E+02 0.0061 22.8 5.5 58 26-86 33-90 (248)
170 cd03028 GRX_PICOT_like Glutare 20.3 2.9E+02 0.0063 18.7 4.9 44 41-85 27-71 (90)
171 cd08187 BDH Butanol dehydrogen 20.2 2.7E+02 0.006 24.3 5.7 52 41-94 47-102 (382)
172 PF12982 DUF3866: Protein of u 20.2 4.9E+02 0.011 22.8 7.0 73 30-105 91-170 (320)
173 COG0285 FolC Folylpolyglutamat 20.1 1.2E+02 0.0026 27.6 3.4 26 68-94 129-154 (427)
174 cd03332 LMO_FMN L-Lactate 2-mo 20.1 2.6E+02 0.0056 25.0 5.5 63 38-105 239-302 (383)
175 PF04122 CW_binding_2: Putativ 20.0 2.1E+02 0.0045 19.4 4.0 37 49-89 48-84 (92)
No 1
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=100.00 E-value=1.1e-52 Score=340.83 Aligned_cols=167 Identities=28% Similarity=0.468 Sum_probs=155.1
Q ss_pred EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCCE
Q psy16241 2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKIDY 80 (186)
Q Consensus 2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~ 80 (186)
++|||||||++|+++ +++||++||||||++++.+++|++++++++++| +||+||+|+||+++.+ +++++
T Consensus 20 ~~i~aDgGa~~l~~~---------gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~~~eKD~TD~e~Al~~~~~-~~~~~ 89 (203)
T TIGR01378 20 LVIAADGGANHLLKL---------GLTPDLIVGDFDSIDEEELDFYKKAGVKIIVFPPEKDTTDLELALKYALE-RGADE 89 (203)
T ss_pred EEEEEChHHHHHHHC---------CCCCCEEEeCcccCCHHHHHHHHHcCCceEEcCCCCCCCHHHHHHHHHHH-CCCCE
Confidence 689999999999999 899999999999999999999999999998875 9999999999999998 69999
Q ss_pred EEEEEcCCCchhHHHHHHHHHHhcC---CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeeeEEe
Q psy16241 81 LISIVEFNGRLDHCMSNINTLYKSS---LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYST 157 (186)
Q Consensus 81 i~v~G~~GgR~DH~l~ni~~l~~~~---~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~~ 157 (186)
|+++||+|||+||+|+|+++|+++. .+++++++++++++++ +|.+.+..+. .+++|||||+++++++||++
T Consensus 90 i~i~Ga~GgR~DH~lani~~L~~~~~~~~~i~l~d~~~~i~~l~--~g~~~~~~~~----~~~~~Sl~pl~~~~~~vt~~ 163 (203)
T TIGR01378 90 ITILGATGGRLDHTLANLNLLLEYAKRGIKVRLIDEQNVIRLLL--PGKYQIFKEP----KGTYISLLPFGGDAHGLTTK 163 (203)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCcEEEEEc--CCCEEEecCC----CCCEEEEEECCCCcccEEee
Confidence 9999999999999999999999864 7899999999999998 8988775432 47999999999888889999
Q ss_pred cceEecCCcccccCCcceeeeeEecCC
Q psy16241 158 GLKWNLNNHTLAFGGMVSSSNTYENET 184 (186)
Q Consensus 158 Glky~L~~~~l~~~~~~~~SNe~~~~~ 184 (186)
||||||+++.|.++.++++|||+.+++
T Consensus 164 Glky~L~~~~l~~~~~~~~SNe~~~~~ 190 (203)
T TIGR01378 164 GLKYPLNNAHLKFGGSRGISNEFIGNK 190 (203)
T ss_pred CCEeecCCceeeCCCeeEECeeEECCc
Confidence 999999999999999999999998764
No 2
>PLN02714 thiamin pyrophosphokinase
Probab=100.00 E-value=6.2e-52 Score=341.98 Aligned_cols=181 Identities=33% Similarity=0.562 Sum_probs=155.9
Q ss_pred CEEEEEchhHHHHHHhhhc----C--CCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHH
Q psy16241 1 KIRCTVDQGTDRWLLFLNQ----H--NLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEIT 73 (186)
Q Consensus 1 ~~~IaaDgGa~~l~~~~~~----~--~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~ 73 (186)
.++|||||||++|++++.. + ..++.+++||++||||||++++++++|++++++++++| +||+||+|+||+++.
T Consensus 21 ~~~i~aDgGa~~l~~~~~~~~~~~~~~~~~~gi~Pd~iiGDfDSi~~e~~~~~~~~~~~i~~~~~eKD~TD~e~Al~~~~ 100 (229)
T PLN02714 21 KLRVCADGGANRLYDEMPLLFPDEDPLAVRNRYKPDVIKGDMDSIRPEVLDFYSNLGTKIVDESHDQDTTDLHKCIAYIR 100 (229)
T ss_pred cEEEEecCcHHHHHhhhhhccccccccccccCcCCCEEEeeccCCCHHHHHHHHHCCCEEEECCCCcccCHHHHHHHHHH
Confidence 4789999999999994211 0 00234899999999999999999999999999998875 999999999999998
Q ss_pred hh-----cCCCEEEEEEcCCCchhHHHHHHHHHHhcC-CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEec
Q psy16241 74 KR-----EKIDYLISIVEFNGRLDHCMSNINTLYKSS-LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPV 147 (186)
Q Consensus 74 ~~-----~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~-~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl 147 (186)
++ .++++|+|+||+|||+||+|+||++|+++. .++++++++++++++++ ++.+.++..... .+++|||||+
T Consensus 101 ~~~~~~~~~~~~I~v~Ga~GGRlDH~laNi~~L~~~~~~~i~lid~~~~i~~l~~-~~~~~i~~~~~~--~~~~~Slipl 177 (229)
T PLN02714 101 DSTPDLDKSNLCILVLGALGGRFDHEAGNINVLYRFPDLRIVLLSDDCLIRLLPA-THRHEIHIDSSV--EGPHCGLIPI 177 (229)
T ss_pred HhccccccCCceEEEEcccCCchHHHHHHHHHHHhcCCceEEEEcCCcEEEEEcC-CCeEEEeecCCC--CCCEEEEEEC
Confidence 63 245899999999999999999999999976 78999999999999972 356777654333 5899999999
Q ss_pred CCceeeeEEecceEecCCcccccCCcceeeeeEecCC
Q psy16241 148 GSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENET 184 (186)
Q Consensus 148 ~~~~~~vt~~Glky~L~~~~l~~~~~~~~SNe~~~~~ 184 (186)
++++++||++||||||++..|.++.++|+|||+.+++
T Consensus 178 ~~~~~~vt~~Glky~L~~~~l~~~~~~~vSNe~~~~~ 214 (229)
T PLN02714 178 GGPSASTTTTGLQWNLDNTEMRFGGLISTSNIVKEDK 214 (229)
T ss_pred CCCcceEEeeCceeeCCCCeeeCCCceEEeeEEcCCE
Confidence 9887789999999999999999999999999998653
No 3
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=100.00 E-value=8.5e-52 Score=336.44 Aligned_cols=167 Identities=32% Similarity=0.549 Sum_probs=156.3
Q ss_pred CEEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCC
Q psy16241 1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKID 79 (186)
Q Consensus 1 ~~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~ 79 (186)
.++||||||+++|+++ |++||++||||||+++++++++++++++++++| +||+||+|+||+++.+ ++++
T Consensus 23 ~~~i~aDgGa~~l~~~---------gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~KD~TD~e~Al~~~~~-~~~~ 92 (208)
T cd07995 23 DLIIAADGGANHLLDL---------GIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEKDFTDFEKALKLALE-RGAD 92 (208)
T ss_pred CEEEEEChHHHHHHHc---------CCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHHH-cCCC
Confidence 3789999999999999 899999999999999999999999999999998 5999999999999998 6999
Q ss_pred EEEEEEcCCCchhHHHHHHHHHHhcC---CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeeeEE
Q psy16241 80 YLISIVEFNGRLDHCMSNINTLYKSS---LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYS 156 (186)
Q Consensus 80 ~i~v~G~~GgR~DH~l~ni~~l~~~~---~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~ 156 (186)
+|+++||+|||+||+|+|+++|+++. .+++|+++++.+++++ +|.++++.+. .+++|||||++++ ++||+
T Consensus 93 ~i~i~Ga~GgR~DH~lani~~l~~~~~~~~~~~l~d~~~~i~~l~--~g~~~i~~~~----~~~~~Sl~pl~~~-~~vt~ 165 (208)
T cd07995 93 EIVILGATGGRLDHTLANLNLLLKYAKDGIKIVLIDEQNEIFLLL--PGSHTLELEE----EGKYVSLIPLGEV-TGLTL 165 (208)
T ss_pred EEEEEccCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCcEEEEEc--CCCEEEeecC----CCCEEEEEeccCC-cceEE
Confidence 99999999999999999999999974 7899999999999998 8999887653 4799999999998 68999
Q ss_pred ecceEecCCcccccCCcceeeeeEecCC
Q psy16241 157 TGLKWNLNNHTLAFGGMVSSSNTYENET 184 (186)
Q Consensus 157 ~Glky~L~~~~l~~~~~~~~SNe~~~~~ 184 (186)
+||||||+++++.++.++++|||+.+++
T Consensus 166 ~Glky~L~~~~l~~~~~~~~SNe~~~~~ 193 (208)
T cd07995 166 KGLKYPLDNATLSFGSSLGTSNEFTGEK 193 (208)
T ss_pred eCCEEecCCceEeCCCeEEEeEEEeCCe
Confidence 9999999999999999999999999853
No 4
>KOG3153|consensus
Probab=100.00 E-value=1.6e-47 Score=308.41 Aligned_cols=177 Identities=40% Similarity=0.663 Sum_probs=161.8
Q ss_pred CEEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhh-----
Q psy16241 1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKR----- 75 (186)
Q Consensus 1 ~~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~----- 75 (186)
++++|||||||+++++.. ++...+||+|+|||||+++++.++|++.|+++++.|+||.|||.||++++.++
T Consensus 48 ~lRvcaDGgaNrlyd~~~----~~~~~~Pd~I~GDfDSi~~ev~~yy~~~g~~vV~~pdQd~TDftKcv~~i~~~~~~~e 123 (250)
T KOG3153|consen 48 KLRVCADGGANRLYDYLS----DRTSEKPDYICGDFDSITEEVDDYYKKNGVTVVHTPDQDTTDFTKCVKWIQEHKTLTE 123 (250)
T ss_pred heeEeccCchhhhhhhcc----cccccCCceeecchhhhhHHHHHHHHhcCCeeEeCCCcCcchHHHHHHHHHHhccccc
Confidence 579999999999999953 45579999999999999999999999999999999999999999999999885
Q ss_pred cCCCEEEEEEcCCCchhHHHHHHHHHHhcC---CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCcee
Q psy16241 76 EKIDYLISIVEFNGRLDHCMSNINTLYKSS---LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQ 152 (186)
Q Consensus 76 ~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~---~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~ 152 (186)
+.+..|+++|++|||+||+|+|+.+|+++. .++.++.+.+.+++++ ||.|+++++....-.++.|||+|++.++.
T Consensus 124 ~~~~~IvvlgglgGRfDq~m~nln~Ly~~~~~~~~i~llt~~~li~Ll~--pg~h~ie~~v~~~~~~~~CGLiPIGq~~~ 201 (250)
T KOG3153|consen 124 WKFLNIVVLGGLGGRFDQTMANLNTLYRAVDIQFPIFLLTEDSLIDLLQ--PGKHRIELHVNLGMTGKWCGLIPIGQPET 201 (250)
T ss_pred ceeeeEEEecccCccHHHHHHhHHHhhehhccccceEEecCCchHhhhc--CCCceEEeccccccccCceeeeeccccee
Confidence 234569999999999999999999999998 6799999999999999 89998777755433678899999999999
Q ss_pred eeEEecceEecCCcccccCCcceeeeeEecC
Q psy16241 153 QVYSTGLKWNLNNHTLAFGGMVSSSNTYENE 183 (186)
Q Consensus 153 ~vt~~Glky~L~~~~l~~~~~~~~SNe~~~~ 183 (186)
.+|+.||||+|.|..+.||+.+|+||.+.++
T Consensus 202 ~ktT~GLkWnl~n~~~~fgglvStsN~~~~~ 232 (250)
T KOG3153|consen 202 VKTTTGLKWNLSNRRMKFGGLVSTSNTYDGE 232 (250)
T ss_pred eeeecccccccccceeecceEEeecceeecc
Confidence 9999999999999999999999999998875
No 5
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=100.00 E-value=1.7e-46 Score=304.46 Aligned_cols=163 Identities=27% Similarity=0.387 Sum_probs=150.4
Q ss_pred EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCCE
Q psy16241 2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKIDY 80 (186)
Q Consensus 2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~ 80 (186)
.+||||||+++|+++ +++|+++||||||++++++++|++..+. +++| +||+||+|+|+++|.+ +++++
T Consensus 26 ~~v~aDgGa~~l~~~---------gl~P~~~vGDfDSv~~e~~~~~~~~~~~-~~f~~eKd~TD~elAl~~a~e-~g~d~ 94 (212)
T COG1564 26 KIVAADGGANHLLEL---------GLVPDLAVGDFDSVSEELLAYYKEKTVT-IKFPAEKDSTDLELALDEALE-RGADE 94 (212)
T ss_pred eEEEECcHHHHHHHc---------CCCccEEEecccccCHHHHHHHhhcCcc-eecChhhccchHHHHHHHHHH-cCCCE
Confidence 489999999999999 8999999999999999999999998766 7776 9999999999999999 79999
Q ss_pred EEEEEcCCCchhHHHHHHHHHHhcC---CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeeeEEe
Q psy16241 81 LISIVEFNGRLDHCMSNINTLYKSS---LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYST 157 (186)
Q Consensus 81 i~v~G~~GgR~DH~l~ni~~l~~~~---~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~~ 157 (186)
|+++||+|||+||+|+|+.+++++. .++.+++++|.++.++ +|.|.+..+ .+..+|+|+.. .+.++|++
T Consensus 95 i~i~Ga~GGR~DH~l~nl~ll~~~~~~~~~i~l~~~~n~~~~l~--~g~~~i~~~-----~~~~~s~f~~~-~~~~Lti~ 166 (212)
T COG1564 95 IVILGALGGRLDHALANLFLLLRPAKSGFKITLISGQNLITPLP--PGQHTIEKD-----PGYLYSIFGGE-DVAGLTIK 166 (212)
T ss_pred EEEEecCCChHHHHHHHHHHHHhhhhccceEEEecCCceEEEeC--CCceEeccC-----CCccEEEEecc-cccceEec
Confidence 9999999999999999999999986 7899999999999999 899988876 45677777744 46789999
Q ss_pred cceEecCCcccccCCcceeeeeEecC
Q psy16241 158 GLKWNLNNHTLAFGGMVSSSNTYENE 183 (186)
Q Consensus 158 Glky~L~~~~l~~~~~~~~SNe~~~~ 183 (186)
|+||||+++.+.++..+++|||+.+.
T Consensus 167 g~KypL~~~~~~~g~~~siSN~~~~~ 192 (212)
T COG1564 167 GAKYPLKNADLPFGSSRSISNEFIGD 192 (212)
T ss_pred cceeeccCccccccceeEEeeeeeCC
Confidence 99999999999999999999999985
No 6
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=100.00 E-value=2.2e-36 Score=227.65 Aligned_cols=103 Identities=32% Similarity=0.564 Sum_probs=89.6
Q ss_pred CEEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCE
Q psy16241 1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDY 80 (186)
Q Consensus 1 ~~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~ 80 (186)
+++||||||+++++++. +++||++||||||++++++++|+++|++++++|+||+||+|+||+++.+ .++++
T Consensus 17 ~~~i~aDgGa~~l~~~~--------g~~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~-~~~~~ 87 (123)
T PF04263_consen 17 DFIIAADGGANRLYELF--------GIKPDLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIE-QGPDE 87 (123)
T ss_dssp SEEEEETTHHHHHHHTT--------TT--SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHH-TTTSE
T ss_pred CEEEEEchHHHHHHHhc--------CCCCCEEEecCCCCChHHHHHHHhhccceecccccccCHHHHHHHHHHH-CCCCE
Confidence 47999999999999982 4999999999999999999999999999999999999999999999987 79999
Q ss_pred EEEEEcCCCchhHHHHHHHHHHhcC---CCEEEEc
Q psy16241 81 LISIVEFNGRLDHCMSNINTLYKSS---LPIYLLS 112 (186)
Q Consensus 81 i~v~G~~GgR~DH~l~ni~~l~~~~---~~i~l~~ 112 (186)
|+++||+|||+||+|+|+++|+++. .+++|+|
T Consensus 88 i~v~Ga~GgR~DH~lanl~~l~~~~~~~~~i~lid 122 (123)
T PF04263_consen 88 IIVLGALGGRFDHTLANLNLLYKYKKRGIKIVLID 122 (123)
T ss_dssp EEEES-SSSSHHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 9999999999999999999999886 6777765
No 7
>PF04265 TPK_B1_binding: Thiamin pyrophosphokinase, vitamin B1 binding domain; InterPro: IPR007373 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0009229 thiamine diphosphate biosynthetic process; PDB: 3LM8_B 1IG0_A 3CQ9_A 3L8M_B 3IHK_B 3MEL_B 2HH9_A 2F17_B 1IG3_B 2G9Z_A ....
Probab=99.57 E-value=2.4e-15 Score=101.86 Aligned_cols=57 Identities=39% Similarity=0.710 Sum_probs=50.6
Q ss_pred CeEEEEeCCCCCCCCCEEEEEecCCceeeeEEecceEecCCcccccCCcceeeeeEecCC
Q psy16241 125 GLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENET 184 (186)
Q Consensus 125 g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~~Glky~L~~~~l~~~~~~~~SNe~~~~~ 184 (186)
|+|+|+.+..+ .|++|||||+++.+. ||++|+||||+++.|.++.++++|||+.+++
T Consensus 1 G~h~i~~~~~~--~g~~~Sl~pl~~~~~-vt~~Glky~L~~~~l~~~~~~~~SNe~~~~~ 57 (68)
T PF04265_consen 1 GTHEIKKDEGY--EGKYVSLFPLGEPVT-VTIKGLKYPLDNYTLSFGSSIGISNEFIEDS 57 (68)
T ss_dssp EEEEEE-BTTC--CEEEEEEEESSSEEE-EEEESBSSEEEEEEEBTTTBTEEEEEBSSSC
T ss_pred CcEEEEECCCc--cCCEEEEEECcCCeE-EEEeCCEEECccceecCCCeeEECeEEECCc
Confidence 67889888765 679999999999876 9999999999999999999999999998654
No 8
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=98.72 E-value=4.1e-08 Score=83.19 Aligned_cols=81 Identities=23% Similarity=0.325 Sum_probs=67.6
Q ss_pred EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHH-------------------HHHhcCCceeeCC-CCC
Q psy16241 2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMG-------------------RFLALGSDIVPTP-DQS 61 (186)
Q Consensus 2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~-------------------~~~~~g~~i~~~p-dkD 61 (186)
+.|+|||+|+.+.++ |++|++||||.|||+.+++. .+...|+--+.|| .-.
T Consensus 209 vlIgVdGaAD~l~~~---------GykP~lIvGdp~~i~~~aLR~ga~vvlpad~dGhApGleRiQdLGvgAmTFP~~gs 279 (395)
T COG4825 209 VLIGVDGAADVLRKA---------GYKPQLIVGDPDQISTEALRCGAKVVLPADADGHAPGLERIQDLGVGAMTFPAAGS 279 (395)
T ss_pred EEEEccchHHHHHHc---------CCCcceeecCcchhhHHHHhcccceeeccCCCCCCchHHHHHhcCcceeeccCCCc
Confidence 579999999999999 89999999999999999854 6677788888888 345
Q ss_pred ccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHHH
Q psy16241 62 YTDFQKAVMEITKREKIDYLISIVEFNGRLDHCM 95 (186)
Q Consensus 62 ~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~l 95 (186)
+|| +|+.+|.+ .|+..++.+|+.-+ +|-+|
T Consensus 280 stD--lAllLAd~-hga~~lv~vG~~~~-~~~ff 309 (395)
T COG4825 280 STD--LALLLADH-HGAALLVTVGHRAN-IETFF 309 (395)
T ss_pred hhh--HHHHHhhc-cCcceeEecCCccc-HHHHH
Confidence 555 78888887 69999999998876 55555
No 9
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=98.00 E-value=2.9e-05 Score=63.78 Aligned_cols=77 Identities=21% Similarity=0.163 Sum_probs=56.2
Q ss_pred EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHHhcCCceee-------------------------
Q psy16241 2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVP------------------------- 56 (186)
Q Consensus 2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~------------------------- 56 (186)
.+|+|||+++.+++. |+.||++|+|+|-= ++.+-...++|..++.
T Consensus 75 ~vi~AdgA~~~l~~~---------gi~pDiiVTDlDgd-~e~~~~~~~~g~i~VVHAHGDNi~~i~~~~~~~~~vigTtQ 144 (232)
T COG1634 75 VVIAADGAVSALLER---------GIRPDIIVTDLDGD-PEDLLSCTAKGSIVVVHAHGDNIWRIPKVVPVLDRVIGTTQ 144 (232)
T ss_pred eEEeccHHHHHHHHc---------CCCCcEEEecCCCC-HHHHHHhhccCCEEEEEecCcCHHHhhccccccceeecccc
Confidence 689999999999999 89999999999983 3333333333321110
Q ss_pred -CC-C-----CCccHHHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241 57 -TP-D-----QSYTDFQKAVMEITKREKIDYLISIVEFNG 89 (186)
Q Consensus 57 -~p-d-----kD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg 89 (186)
.| + --+||..-|.-+|.. +|+.+|++.|...+
T Consensus 145 ~~P~~~v~NfgGFTDGDRAa~LA~~-lgA~~I~l~GfdF~ 183 (232)
T COG1634 145 VRPFDRVYNFGGFTDGDRAAFLAYY-LGAEKIRLVGFDFG 183 (232)
T ss_pred cCCCcceeccCCCCCchHHHHHHHH-hCCCeEEEeeecCC
Confidence 01 1 246999999999987 89999999997765
No 10
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=94.57 E-value=0.18 Score=39.23 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=24.5
Q ss_pred EEEEEchhHHHHHHhhhcCCCCCCCccccEEEccCCC
Q psy16241 2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDS 38 (186)
Q Consensus 2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDS 38 (186)
++||||..+..+.+. |++||++|- +|.
T Consensus 51 ~iia~~sa~~~L~~~---------gI~Pd~~v~-~D~ 77 (170)
T PF01973_consen 51 IIIAVNSALKALLKN---------GIKPDFVVS-IDP 77 (170)
T ss_pred EEEEecHHHHHHHHc---------CceEEEEEE-cCC
Confidence 689999999999998 899999998 666
No 11
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=92.38 E-value=0.5 Score=36.31 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=50.0
Q ss_pred CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241 36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL 101 (186)
Q Consensus 36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l 101 (186)
.||-.+-..+.+++.|+++.... ..|.-++..+|+.+.+..+++-|+..|+.| |+.|++-.-+.-+
T Consensus 18 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~ 86 (152)
T cd00886 18 EDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPL 86 (152)
T ss_pred ccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHH
Confidence 68888888888999998877643 235566888888876522689999999999 7999977665544
No 12
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=91.28 E-value=0.83 Score=34.13 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=50.7
Q ss_pred CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHH
Q psy16241 36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLY 102 (186)
Q Consensus 36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~ 102 (186)
.|+-.+...+++++.|..+.... ..|..+.+.+++.+.+ .++-|+..|++| |+-|++-..+.-+.
T Consensus 16 ~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~--~~dliittGG~g~g~~D~t~~~l~~~~ 83 (135)
T smart00852 16 YDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALE--RADLVITTGGTGPGPDDVTPEAVAEAL 83 (135)
T ss_pred ccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHh--CCCEEEEcCCCCCCCCcCcHHHHHHHh
Confidence 47777777889999997765431 2477778899988875 488999999999 89999988776654
No 13
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=90.55 E-value=2 Score=32.14 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=49.8
Q ss_pred CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHH
Q psy16241 36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLY 102 (186)
Q Consensus 36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~ 102 (186)
.||-.+-..+++++.|.++...+ ..|.-.+..+++.+.+ .++-|++.|++| |+.||+-.-+.-+.
T Consensus 17 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~--~~DlvittGG~g~g~~D~t~~ai~~~g 84 (133)
T cd00758 17 EDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASR--EADLVLTTGGTGVGRRDVTPEALAELG 84 (133)
T ss_pred EEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHh--cCCEEEECCCCCCCCCcchHHHHHHhc
Confidence 47777777788999998777643 3355668888888876 389999999999 79999887665543
No 14
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=90.39 E-value=0.82 Score=34.80 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=51.1
Q ss_pred CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHH
Q psy16241 36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLY 102 (186)
Q Consensus 36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~ 102 (186)
.||-.+-..+.+++.|+++.... ..|..++..+++.+.+ +++-|++.|++| |+-|++-..+.-+.
T Consensus 25 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~--~~DliIttGG~g~g~~D~t~~ai~~~g 92 (144)
T TIGR00177 25 YDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVD--EADVVLTTGGTGVGPRDVTPEALEELG 92 (144)
T ss_pred EeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHh--CCCEEEECCCCCCCCCccHHHHHHHhC
Confidence 47877888889999998887642 3366778999988764 699999999999 68999887766543
No 15
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=89.30 E-value=1.4 Score=34.50 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=49.6
Q ss_pred CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241 36 FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL 101 (186)
Q Consensus 36 fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l 101 (186)
.|+-.+-....+++.|.++..+ || |.-++..+++.+.+..+++-|++.|++| |.-|++-..+.-+
T Consensus 20 ~d~n~~~l~~~L~~~G~~v~~~~iv~D-d~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l 88 (163)
T TIGR02667 20 DDTSGQYLVERLTEAGHRLADRAIVKD-DIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPL 88 (163)
T ss_pred CCCcHHHHHHHHHHCCCeEEEEEEcCC-CHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHH
Confidence 5776666777889999877654 44 6677889998876424799999999999 7999887766554
No 16
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=88.47 E-value=0.61 Score=35.27 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=49.7
Q ss_pred CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHHh
Q psy16241 36 FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLYK 103 (186)
Q Consensus 36 fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~~ 103 (186)
.||-..-..+++++.|.++... || |..+.+.++..+.+ ..+-|+..|++| |+-|++.-.+.-+..
T Consensus 15 ~d~n~~~l~~~l~~~G~~v~~~~~v~D-d~~~i~~~l~~~~~--~~D~VittGG~g~~~~D~t~~a~~~~~~ 83 (144)
T PF00994_consen 15 RDSNGPFLAALLEELGIEVIRYGIVPD-DPDAIKEALRRALD--RADLVITTGGTGPGPDDVTPEALAEAGG 83 (144)
T ss_dssp EBHHHHHHHHHHHHTTEEEEEEEEEES-SHHHHHHHHHHHHH--TTSEEEEESSSSSSTTCHHHHHHHHHSS
T ss_pred EEhHHHHHHHHHHHcCCeeeEEEEECC-CHHHHHHHHHhhhc--cCCEEEEcCCcCcccCCcccHHHHHhcC
Confidence 4565566678888999877653 44 88899999988876 359999999999 799998866654443
No 17
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=87.93 E-value=1.4 Score=34.70 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=49.9
Q ss_pred CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHHhc
Q psy16241 36 FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLYKS 104 (186)
Q Consensus 36 fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~~~ 104 (186)
.|+-.+-..+.+++.|..+... || |...+..++..+.+ .++-|++.|++| ++-|++-..+.-+...
T Consensus 17 ~d~n~~~l~~~L~~~G~~v~~~~~v~D-d~~~I~~~l~~~~~--~~dlVIttGG~G~t~~D~t~ea~~~~~~~ 86 (170)
T cd00885 17 VDTNAAFLAKELAELGIEVYRVTVVGD-DEDRIAEALRRASE--RADLVITTGGLGPTHDDLTREAVAKAFGR 86 (170)
T ss_pred EEhHHHHHHHHHHHCCCEEEEEEEeCC-CHHHHHHHHHHHHh--CCCEEEECCCCCCCCCChHHHHHHHHhCC
Confidence 3665666667888889877653 44 66678899988875 589999999999 7999998777765543
No 18
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=82.65 E-value=8.9 Score=34.08 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=50.1
Q ss_pred CCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241 37 DSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL 101 (186)
Q Consensus 37 DSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l 101 (186)
||-+.-....+++.|.++..+. ..|...+..+|+.+.+ .++-|+..|+.| |+.|++-..+.-+
T Consensus 194 dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~--~~DliittGG~s~g~~D~~~~al~~~ 259 (394)
T cd00887 194 DSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALE--EADVVITSGGVSVGDYDFVKEVLEEL 259 (394)
T ss_pred EChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhh--CCCEEEEeCCCCCCcchhHHHHHHhC
Confidence 7777777788999998887753 3356778899998875 489999999998 8999988776654
No 19
>PRK03670 competence damage-inducible protein A; Provisional
Probab=81.12 E-value=4.2 Score=34.16 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=48.8
Q ss_pred CCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHHhc
Q psy16241 37 DSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLYKS 104 (186)
Q Consensus 37 DSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~~~ 104 (186)
|+-..-..+++.+.|+.+... || |.-+...+++.+.. ..++-|++.|++| +.-|.+...++-++..
T Consensus 19 dtN~~~la~~L~~~G~~v~~~~iV~D-d~~~I~~~l~~a~~-~~~DlVIttGGlGpt~dD~T~eava~a~g~ 88 (252)
T PRK03670 19 DSNSAFIAQKLTEKGYWVRRITTVGD-DVEEIKSVVLEILS-RKPEVLVISGGLGPTHDDVTMLAVAEALGR 88 (252)
T ss_pred ehhHHHHHHHHHHCCCEEEEEEEcCC-CHHHHHHHHHHHhh-CCCCEEEECCCccCCCCCchHHHHHHHhCC
Confidence 554455557788899877653 44 67778888888765 4689999999999 6899988776665543
No 20
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=80.88 E-value=13 Score=28.71 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCceeeC-CC--CCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 42 NSMGRFLALGSDIVPT-PD--QSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~-pd--kD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
.+.++++++|.+++.+ |+ -|+.|+..++-........+.=++++++|
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~~~GIliCGTG 66 (142)
T PRK08621 17 VVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYG 66 (142)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCC
Confidence 4567888888888875 42 48899888887777544567778888888
No 21
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=79.68 E-value=2.8 Score=36.01 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=35.4
Q ss_pred CccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccH
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTD 64 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD 64 (186)
..+||++||+=++-.+.+++.+++.|++++..|++++-|
T Consensus 97 slkPdlvi~~~~aGP~~vl~qLraagV~vv~v~~~~~~~ 135 (300)
T COG4558 97 SLKPDLVIGSEGAGPATVLDQLRAAGVPVVTVPEQPTLD 135 (300)
T ss_pred ecCCCEEEeecccCcHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 479999999999999999999999999999999877655
No 22
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=79.64 E-value=4.8 Score=33.99 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=39.7
Q ss_pred HHHHhcCCceee---CCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCch-hHHHHHH
Q psy16241 45 GRFLALGSDIVP---TPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRL-DHCMSNI 98 (186)
Q Consensus 45 ~~~~~~g~~i~~---~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~-DH~l~ni 98 (186)
+++.++|+.+.+ .+| |..+...+|+.+.+ . ++-|++.|++|=-- |+|.-.+
T Consensus 28 ~~L~~~G~~v~~~~~VgD-~~~~I~~~l~~a~~-r-~D~vI~tGGLGPT~DDiT~e~v 82 (255)
T COG1058 28 DELTELGVDLARITTVGD-NPDRIVEALREASE-R-ADVVITTGGLGPTHDDLTAEAV 82 (255)
T ss_pred HHHHhcCceEEEEEecCC-CHHHHHHHHHHHHh-C-CCEEEECCCcCCCccHhHHHHH
Confidence 677788987765 356 89999999999998 4 99999999999644 4554333
No 23
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=78.21 E-value=17 Score=27.98 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCceeeC-C-CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-C
Q psy16241 42 NSMGRFLALGSDIVPT-P-DQSYTDFQKAVMEITKREKIDYLISIVEFN-G 89 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~-p-dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-g 89 (186)
.++++++++|.+++.+ | .-|+.|+..++-.+......+.=++++++| |
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG 67 (141)
T PRK12613 17 LIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAG 67 (141)
T ss_pred HHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCHh
Confidence 4567888889888876 4 358899888888777645577778888888 5
No 24
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=76.77 E-value=19 Score=27.82 Aligned_cols=47 Identities=21% Similarity=0.148 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCceeeC-C-C----CCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 42 NSMGRFLALGSDIVPT-P-D----QSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~-p-d----kD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
.++++++++|.+++.+ | + .|+.|+..++-.+.....++.-++++++|
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtG 69 (148)
T TIGR02133 17 ALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSG 69 (148)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCC
Confidence 4567888888888775 4 1 25778777777666545577788888888
No 25
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=73.07 E-value=16 Score=27.90 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCceeeC-C-C---CCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 42 NSMGRFLALGSDIVPT-P-D---QSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~-p-d---kD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
..+++++++|.+++.+ | + -|+.|+..++-.+.....++.-++++++|
T Consensus 16 ~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgtG 67 (140)
T PF02502_consen 16 AIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILICGTG 67 (140)
T ss_dssp HHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEEESSS
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCCC
Confidence 4567888889888875 3 2 25666766666666545678888888888
No 26
>PRK01215 competence damage-inducible protein A; Provisional
Probab=72.83 E-value=12 Score=31.68 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=48.2
Q ss_pred CCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHH
Q psy16241 37 DSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLY 102 (186)
Q Consensus 37 DSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~ 102 (186)
|+-..-..+.+.+.|+++... || |.-+...+|+.+.+ .++-|++.|++| +.-|.+...+.-+.
T Consensus 22 dtn~~~l~~~L~~~G~~v~~~~~v~D-d~~~I~~~l~~a~~--~~DlVIttGG~g~t~dD~t~eaia~~~ 88 (264)
T PRK01215 22 NTNASWIARRLTYLGYTVRRITVVMD-DIEEIVSAFREAID--RADVVVSTGGLGPTYDDKTNEGFAKAL 88 (264)
T ss_pred EhhHHHHHHHHHHCCCeEEEEEEeCC-CHHHHHHHHHHHhc--CCCEEEEeCCCcCChhhhHHHHHHHHh
Confidence 665556667888899887653 44 67778999999876 469999999999 78999886666553
No 27
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=72.50 E-value=7.7 Score=33.68 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=53.8
Q ss_pred EEEcc-------CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHH
Q psy16241 31 LVTGD-------FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNIN 99 (186)
Q Consensus 31 ~iiGD-------fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~ 99 (186)
+++|| .||-.+...+.+++.|..+..+ || |.-.+..+++.+.. .+++-|+..|++| |.-|++--.+.
T Consensus 161 ltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpD-D~~~I~~al~~a~~-~~~DlIITTGGtg~g~~D~tpeAl~ 238 (312)
T PRK03604 161 LVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPD-EPAEIAAAVAAWIA-EGYALIITTGGTGLGPRDVTPEALA 238 (312)
T ss_pred EEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCC-CHHHHHHHHHHhhh-CCCCEEEECCCCCCCCCccHHHHHH
Confidence 55888 5777777788899999877653 44 66668888887754 4689999999999 79999887766
Q ss_pred HHH
Q psy16241 100 TLY 102 (186)
Q Consensus 100 ~l~ 102 (186)
-+.
T Consensus 239 ~lg 241 (312)
T PRK03604 239 PLL 241 (312)
T ss_pred Hhc
Confidence 554
No 28
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=72.44 E-value=30 Score=26.60 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCceeeC-C-C-CCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 42 NSMGRFLALGSDIVPT-P-D-QSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~-p-d-kD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
..+++++++|.+++.+ + + -|+.|+...+-.......++.=++++++|
T Consensus 17 ~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~e~~~GIliCGtG 66 (141)
T TIGR01118 17 VIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQKDEQNLGIVIDAYG 66 (141)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCC
Confidence 4567888888888875 4 2 48888887777766545677778888888
No 29
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=72.23 E-value=27 Score=27.72 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCceeeC-C----CCCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 42 NSMGRFLALGSDIVPT-P----DQSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~-p----dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
.++++++++|.+++.+ + .-|+.|+..++-.+......+.-++++++|
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTG 68 (171)
T PRK12615 17 AVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGTG 68 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 4567888888888874 3 137788877777776545577888888888
No 30
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=71.78 E-value=32 Score=26.44 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCceeeC-C---C-CCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 42 NSMGRFLALGSDIVPT-P---D-QSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~-p---d-kD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
.++++++++|.+++.+ + + -|+.|+...+-.+.....++.-++++++|
T Consensus 16 ~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtG 67 (143)
T TIGR01120 16 EIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGTG 67 (143)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcCCc
Confidence 3557788888888764 3 2 26777777766666544577888888888
No 31
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=70.40 E-value=9 Score=33.22 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=50.7
Q ss_pred CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241 36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL 101 (186)
Q Consensus 36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l 101 (186)
.|+-.+-..+++++.|+++.... ..|...+..|++.+.+ .+++-|++.|+.| |+-|++-..+.-+
T Consensus 177 ~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~-~g~DlIItTGGtsvg~~D~tp~Ai~~~ 244 (312)
T cd03522 177 EDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALE-AGAELLILTGGASVDPDDVTPAAIRAA 244 (312)
T ss_pred EEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhc-CCCCEEEEeCCcccCCcchHHHHHHhc
Confidence 38878888889999998876532 2366778899988876 5799999999998 7999987766543
No 32
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=70.19 E-value=31 Score=27.39 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCceeeC-C-C---CCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 42 NSMGRFLALGSDIVPT-P-D---QSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~-p-d---kD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
.++++++++|.+++.+ + + -|+.|+..++-.+.....++.-++++++|
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGTG 68 (171)
T TIGR01119 17 EVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTG 68 (171)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 4567888889888874 3 2 26777777777666544577888888888
No 33
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=69.82 E-value=32 Score=26.82 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=36.2
Q ss_pred hHHHHHHHhcCCceeeC----CC--CCccHHHHHHHHHHhhcCCCEEEEEEcCC-C
Q psy16241 41 SNSMGRFLALGSDIVPT----PD--QSYTDFQKAVMEITKREKIDYLISIVEFN-G 89 (186)
Q Consensus 41 ~~~~~~~~~~g~~i~~~----pd--kD~TD~e~Al~~~~~~~~~~~i~v~G~~G-g 89 (186)
....++++++|.+++.+ ++ -|++|+.+.+-........+.-++++++| |
T Consensus 16 ~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTGiG 71 (151)
T COG0698 16 EIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTGIG 71 (151)
T ss_pred HHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCChh
Confidence 34567889999988863 33 58899988888776533567788888888 5
No 34
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=68.70 E-value=35 Score=27.09 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCceeeC-C-C---CCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 42 NSMGRFLALGSDIVPT-P-D---QSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~-p-d---kD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
.++++++++|.+++.+ + + -|+.|+..++-.+......+.-++++++|
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIliCGTG 68 (171)
T PRK08622 17 AVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTG 68 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEEcCCc
Confidence 4567888888888875 3 1 36777777777666544577888888888
No 35
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=68.16 E-value=13 Score=33.44 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=48.2
Q ss_pred CCCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241 36 FDSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL 101 (186)
Q Consensus 36 fDSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l 101 (186)
.||-..-..+.+++.|..+... || |..++..+|+.+.+ .++-|++.|++| ++-|++-..+.-+
T Consensus 18 ~dtN~~~l~~~L~~~G~~v~~~~~v~D-d~~~i~~~l~~a~~--~~DlVIttGGlgpt~dD~t~eava~~ 84 (413)
T TIGR00200 18 VNTNAQWLADFLAHQGLPLSRRTTVGD-NPERLKTIIRIASE--RADVLIFNGGLGPTSDDLTAETIATA 84 (413)
T ss_pred EEchHHHHHHHHHHCCCeEEEEEEeCC-CHHHHHHHHHHHhc--CCCEEEEcCCCCCCCcccHHHHHHHH
Confidence 3665666667888899877653 44 77788999998874 589999999999 7999988666433
No 36
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=66.78 E-value=28 Score=32.87 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=49.3
Q ss_pred CCCCChHHHHHHHhcCCceeeCC-CC-CccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241 36 FDSVSSNSMGRFLALGSDIVPTP-DQ-SYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL 101 (186)
Q Consensus 36 fDSi~~~~~~~~~~~g~~i~~~p-dk-D~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l 101 (186)
.||-.+-....+++.|..+..+. -+ |.-++..+|+.+.+ +++-|++.|+.| |+-|++-.-+.-+
T Consensus 211 ~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~--~~D~iIttGG~s~g~~D~~~~~l~~~ 277 (633)
T PRK14498 211 YDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALK--ECDLVLLSGGTSAGAGDVTYRVIEEL 277 (633)
T ss_pred EEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh--cCCEEEECCCCcCCCcccHHHHHHhc
Confidence 37777777788999998887653 33 55668899988874 699999999999 7999987655443
No 37
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=66.04 E-value=44 Score=25.88 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCceeeC-C--CC---CccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 42 NSMGRFLALGSDIVPT-P--DQ---SYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~-p--dk---D~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
.+.++++++|.+++.+ + ++ |+.|+...+-.......++.=++++++|
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtG 69 (148)
T PRK05571 17 EIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTG 69 (148)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 4557888888888874 3 23 6677777776666534577888888888
No 38
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=64.96 E-value=34 Score=32.32 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=47.6
Q ss_pred CCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHH
Q psy16241 37 DSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNIN 99 (186)
Q Consensus 37 DSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~ 99 (186)
||-++-....+++.|..+..+. ..|...++.+|+.+.+ .++-|+..|+.| |+.|++-.-+.
T Consensus 393 dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~--~~DlIIttGG~s~G~~D~~~~al~ 456 (597)
T PRK14491 393 DSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAA--QADVVISSGGVSVGDADYIKTALA 456 (597)
T ss_pred eCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhh--cCCEEEEcCCccCCCcccHHHHHH
Confidence 7777777888999998876542 3477778999988874 689999999988 79999765444
No 39
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=64.72 E-value=35 Score=30.79 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=46.8
Q ss_pred CCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241 37 DSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL 101 (186)
Q Consensus 37 DSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l 101 (186)
||-+.-....+++.|++++.+. ..|.-.+..+|+.+.+ .++-|++.|+.+ |+.|++-.-+.-+
T Consensus 219 dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~--~~DlIItTGG~S~G~~D~v~~~l~~~ 284 (419)
T PRK14690 219 DANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAA--EADVILTSGGASAGDEDHVSALLREA 284 (419)
T ss_pred eCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCc--cCCEEEEcCCccCCCcchHHHHHHhc
Confidence 6766667778999998887653 2355567888887764 588888888887 8999977766544
No 40
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=64.71 E-value=46 Score=25.86 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=32.0
Q ss_pred HHHHHHHh--cCCceeeC-C-C---CCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 42 NSMGRFLA--LGSDIVPT-P-D---QSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 42 ~~~~~~~~--~g~~i~~~-p-d---kD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
.+++++++ +|.+++.+ | + -|+.|+...+-.+.....++.-++++++|
T Consensus 19 ~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGtG 72 (151)
T PTZ00215 19 EIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGSG 72 (151)
T ss_pred HHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 45677888 88888875 4 2 26666666666555534577788888888
No 41
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=63.93 E-value=20 Score=28.86 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=46.0
Q ss_pred CCCChHHHHHHHhcCCc---ee--eCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHHh
Q psy16241 37 DSVSSNSMGRFLALGSD---IV--PTPDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLYK 103 (186)
Q Consensus 37 DSi~~~~~~~~~~~g~~---i~--~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~~ 103 (186)
|+-.+...+.+++.|.. +. ..|| |.-++..+|..+.+..+++-|+..|++| |.-|++--.+.-+..
T Consensus 22 D~ng~~L~~~L~~~G~~g~~v~~~iVpD-d~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rDvTpeAv~~l~~ 93 (193)
T PRK09417 22 DKGIPALEEWLASALTSPFEIETRLIPD-EQDLIEQTLIELVDEMGCDLVLTTGGTGPARRDVTPEATLAVAD 93 (193)
T ss_pred echHHHHHHHHHHcCCCCceEEEEECCC-CHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCcHHHHHHHHhC
Confidence 55555666778877532 22 2465 5567889998877534789999999999 799998866554443
No 42
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=62.26 E-value=38 Score=30.45 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=47.1
Q ss_pred CCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241 37 DSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL 101 (186)
Q Consensus 37 DSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l 101 (186)
||-+.-...++++.|+++..+. ..|.-.+..+++.+. ..++-|++.|+.+ |..|++--.+.-+
T Consensus 203 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~--~~~DlvIttGG~S~G~~D~~~~al~~l 268 (411)
T PRK10680 203 DTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEAD--SQADVVISSGGVSVGEADYTKTILEEL 268 (411)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhc--cCCCEEEEcCCCCCCCcchHHHHHHhc
Confidence 6666666778899998877643 236666888888764 4689999999988 8999987766544
No 43
>PRK00549 competence damage-inducible protein A; Provisional
Probab=61.71 E-value=22 Score=31.99 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=45.4
Q ss_pred CCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHH
Q psy16241 37 DSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINT 100 (186)
Q Consensus 37 DSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~ 100 (186)
|+-..-..+.+.+.|..+... || |.-+...+++.+. ..++-|++.|++| +.-|++-..+.-
T Consensus 19 DtN~~~L~~~L~~~G~~v~~~~~v~D-d~~~I~~~l~~a~--~~~DlVItTGGlGpt~dD~t~ea~a~ 83 (414)
T PRK00549 19 NTNAQFLSEKLAELGIDVYHQTVVGD-NPERLLSALEIAE--ERSDLIITTGGLGPTKDDLTKETVAK 83 (414)
T ss_pred EhhHHHHHHHHHHCCCeEEEEEEeCC-CHHHHHHHHHHhc--cCCCEEEECCCCCCCCCccHHHHHHH
Confidence 665555667788899877653 44 5566788888765 3689999999999 688988766555
No 44
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=61.20 E-value=28 Score=26.75 Aligned_cols=49 Identities=14% Similarity=-0.013 Sum_probs=31.6
Q ss_pred CccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHh
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITK 74 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~ 74 (186)
...||+|++.-.+...+..+.+++.|++++.++ ..+..+...+++.+.+
T Consensus 67 ~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~ 116 (186)
T cd01141 67 ALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAA 116 (186)
T ss_pred ccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHH
Confidence 489999998654434347788999998887764 3333344444544443
No 45
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=60.94 E-value=25 Score=31.66 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=50.7
Q ss_pred CCCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHH
Q psy16241 36 FDSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNIN 99 (186)
Q Consensus 36 fDSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~ 99 (186)
+||-+.-+...+++.|++++.+. ..|...+..|++.+.+ .++-|++.|+.+ |..|++-.-+.
T Consensus 201 ~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~--~~DviItsGG~SvG~~D~v~~~l~ 265 (404)
T COG0303 201 YDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALS--EADVIITSGGVSVGDADYVKAALE 265 (404)
T ss_pred EecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhh--cCCEEEEeCCccCcchHhHHHHHH
Confidence 58877777888999999888763 3477889999998886 499999999888 89999877666
No 46
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=60.83 E-value=33 Score=32.15 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=46.4
Q ss_pred CCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241 37 DSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL 101 (186)
Q Consensus 37 DSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l 101 (186)
||-+.-....+++.|.++..++ ..|..++..+|+.+.+ .++-|++.|+.+ |+.|++-..+.-+
T Consensus 205 dsNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~--~~DlVIttGGtS~G~~D~~~~al~~l 270 (546)
T PRK14497 205 ESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAIS--VADVLILTGGTSAGEKDFVHQAIREL 270 (546)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhh--cCCEEEEcCCccCCCCccHHHHHhhc
Confidence 5545555567888898776653 2366678888888874 589999999888 8999987765544
No 47
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.84 E-value=6.7 Score=36.85 Aligned_cols=24 Identities=17% Similarity=-0.002 Sum_probs=22.0
Q ss_pred EEEEEchhHHHHHHhhhcCCCCCCCccccEEEc
Q psy16241 2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTG 34 (186)
Q Consensus 2 ~~IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiG 34 (186)
.|+|||+.+..|.+. |+.||++|=
T Consensus 251 ~IFcadsal~~L~k~---------GIkPDyVc~ 274 (594)
T COG2604 251 TIFCADSALPILAKH---------GIKPDYVCS 274 (594)
T ss_pred EEEECCCcchHHHhc---------CCCCCeEEE
Confidence 589999999999999 899999983
No 48
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.49 E-value=9.4 Score=31.45 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=42.8
Q ss_pred CccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcC---CCEEEEEE-cCCCch
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREK---IDYLISIV-EFNGRL 91 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~---~~~i~v~G-~~GgR~ 91 (186)
-+.||+.-..-++..........+.+ .+.+.+ .+-..|...++.++.. .+ ..+|.++| ++||++
T Consensus 57 v~~Pdl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~a~~~~L~~-~~~~~~~~ig~~GfC~GG~~ 125 (236)
T COG0412 57 VLAPDLYGRQGDPTDIEDEPAELETG-LVERVDPAEVLADIDAALDYLAR-QPQVDPKRIGVVGFCMGGGL 125 (236)
T ss_pred EEechhhccCCCCCcccccHHHHhhh-hhccCCHHHHHHHHHHHHHHHHh-CCCCCCceEEEEEEcccHHH
Confidence 47888888666665554222222222 333443 6788999999999987 34 67899999 888864
No 49
>PRK03673 hypothetical protein; Provisional
Probab=56.48 E-value=23 Score=31.82 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=46.6
Q ss_pred CCCChHHHHHHHhcCCceeeC---CCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHHH
Q psy16241 37 DSVSSNSMGRFLALGSDIVPT---PDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTLY 102 (186)
Q Consensus 37 DSi~~~~~~~~~~~g~~i~~~---pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l~ 102 (186)
||-..-..+.+.+.|+.+... +| |.-.+..+++.+.+ .++-|++.|++| +.-|++-..++-.+
T Consensus 20 dtN~~~la~~L~~~G~~v~~~~~v~D-~~~~i~~~l~~a~~--~~DlVI~tGGlGpt~dD~t~~avA~a~ 86 (396)
T PRK03673 20 DTNAAWLADFFFHQGLPLSRRNTVGD-NLDALVAILRERSQ--HADVLIVNGGLGPTSDDLSALAAATAA 86 (396)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEcCC-CHHHHHHHHHHHhc--cCCEEEEcCCCCCCCcccHHHHHHHHc
Confidence 564455556788889877653 44 67778889998875 589999999999 78999875555443
No 50
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=55.86 E-value=34 Score=28.19 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=30.9
Q ss_pred CccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHH
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVME 71 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~ 71 (186)
...||+|++.-..-.++..+.+++.|++++.+..+..-|....++.
T Consensus 70 ~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~ 115 (260)
T PRK03379 70 ALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQ 115 (260)
T ss_pred hcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHH
Confidence 4789999996544346677889999999887643344444444443
No 51
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=53.31 E-value=22 Score=28.82 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=31.9
Q ss_pred eCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhH
Q psy16241 56 PTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDH 93 (186)
Q Consensus 56 ~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH 93 (186)
+.|+|-..|++..++...++++.++++++|-.-| .|=
T Consensus 45 rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFG-ADv 81 (192)
T PF06057_consen 45 RTPEQTAADLARIIRHYRARWGRKRVVLIGYSFG-ADV 81 (192)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCC-chh
Confidence 5678888999999999888899999999998888 443
No 52
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=52.97 E-value=1.4e+02 Score=27.00 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=55.1
Q ss_pred ccCCCCChHHHHHHHhcCCceeeCCCCCc--------------cHHHHHHHHHHhhcCCCEE---EEEEcCCCchhHHHH
Q psy16241 34 GDFDSVSSNSMGRFLALGSDIVPTPDQSY--------------TDFQKAVMEITKREKIDYL---ISIVEFNGRLDHCMS 96 (186)
Q Consensus 34 GDfDSi~~~~~~~~~~~g~~i~~~pdkD~--------------TD~e~Al~~~~~~~~~~~i---~v~G~~GgR~DH~l~ 96 (186)
.+.++++++.++.+++.|+..+.+--|++ -+...|++.+.+ .|++.| +++|-.|--.++...
T Consensus 145 ~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~-~G~~~v~~dli~GlPgqt~e~~~~ 223 (453)
T PRK13347 145 IDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRA-AGFESINFDLIYGLPHQTVESFRE 223 (453)
T ss_pred eccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHh-cCCCcEEEeEEEeCCCCCHHHHHH
Confidence 68889999999999999977665443333 356778888877 688743 578888889999999
Q ss_pred HHHHHHhcC
Q psy16241 97 NINTLYKSS 105 (186)
Q Consensus 97 ni~~l~~~~ 105 (186)
.+..+....
T Consensus 224 tl~~~~~l~ 232 (453)
T PRK13347 224 TLDKVIALS 232 (453)
T ss_pred HHHHHHhcC
Confidence 999888887
No 53
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=52.42 E-value=26 Score=33.52 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=47.1
Q ss_pred CCCChHHHHHHHhcCCceeeCC--CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHH
Q psy16241 37 DSVSSNSMGRFLALGSDIVPTP--DQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNIN 99 (186)
Q Consensus 37 DSi~~~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~ 99 (186)
||-..-....+++.|+.+..+. ..|...++.+|+.+.+ ..++-|++.|+.| |..|++-.-+.
T Consensus 208 dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~-~~~DlvItTGGts~G~~D~v~~~l~ 272 (659)
T PLN02699 208 DSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAIS-SGVDILLTSGGVSMGDRDFVKPLLE 272 (659)
T ss_pred eChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhc-CCCCEEEECCCCCCCCCccHHHHHH
Confidence 6666667788999998887643 3377778999988765 4689999999998 69999655444
No 54
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=51.39 E-value=34 Score=25.14 Aligned_cols=57 Identities=18% Similarity=0.082 Sum_probs=37.0
Q ss_pred EEEccCCC-CChHHHHHHHhcC-CceeeCC----CCCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 31 LVTGDFDS-VSSNSMGRFLALG-SDIVPTP----DQSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 31 ~iiGDfDS-i~~~~~~~~~~~g-~~i~~~p----dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
++++-.|| +.++..-. ...| ..+++-. .+.+.+..-+|+++....+.++|+|+|=.+
T Consensus 6 ~vltC~DsRv~~~~~~~-~~~Gd~fv~Rn~Gn~v~~~~~~~~~sl~~av~~l~v~~ivV~gHt~ 68 (119)
T cd00382 6 LIIGCSDSRVPPELIFG-LGPGDLFVVRNAGNLVPPYDLDVLASLEYAVEVLGVKHIIVCGHTD 68 (119)
T ss_pred EEEEeeCCCCCHHHHhC-CCCCCEEEEeccCCcCCCCcccHHHHHHHHHHhhCCCEEEEEccCC
Confidence 57888888 44442211 1122 2334422 245678889999999888999999998664
No 55
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=51.31 E-value=43 Score=26.40 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=40.5
Q ss_pred EEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhH
Q psy16241 31 LVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDH 93 (186)
Q Consensus 31 ~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH 93 (186)
++|=..||.+-+..++++++|+++...+..+. +. +.+.. ..++-|++-|+-|.--|-
T Consensus 3 l~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~-~~----~~~~~-~~~d~iils~GPg~p~~~ 59 (187)
T PRK08007 3 LLIDNYDSFTWNLYQYFCELGADVLVKRNDAL-TL----ADIDA-LKPQKIVISPGPCTPDEA 59 (187)
T ss_pred EEEECCCccHHHHHHHHHHCCCcEEEEeCCCC-CH----HHHHh-cCCCEEEEcCCCCChHHC
Confidence 46777999999999999999988877664222 22 22222 467889999999874443
No 56
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=51.25 E-value=80 Score=22.26 Aligned_cols=74 Identities=11% Similarity=-0.006 Sum_probs=49.2
Q ss_pred EchhHHHHHHhhhcCCCCCCCccccEEEccCCCCC-hHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEE
Q psy16241 6 VDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVS-SNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISI 84 (186)
Q Consensus 6 aDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~-~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~ 84 (186)
..|+.+.+..+.+ .=.|-+++-.=-|-+ .+..+++++.|..+ .+++=.|-...|..++.++.+..+++++
T Consensus 16 ipga~e~l~~L~~-------~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~--~~~~i~ts~~~~~~~l~~~~~~~~v~vl 86 (101)
T PF13344_consen 16 IPGAVEALDALRE-------RGKPVVFLTNNSSRSREEYAKKLKKLGIPV--DEDEIITSGMAAAEYLKEHKGGKKVYVL 86 (101)
T ss_dssp -TTHHHHHHHHHH-------TTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHHHHHHHHHHHTTSSEEEEE
T ss_pred CcCHHHHHHHHHH-------cCCCEEEEeCCCCCCHHHHHHHHHhcCcCC--CcCEEEChHHHHHHHHHhcCCCCEEEEE
Confidence 3455555555432 236667777766666 44557888888763 3477889999999999986788999999
Q ss_pred EcCC
Q psy16241 85 VEFN 88 (186)
Q Consensus 85 G~~G 88 (186)
|.-+
T Consensus 87 G~~~ 90 (101)
T PF13344_consen 87 GSDG 90 (101)
T ss_dssp S-HH
T ss_pred cCHH
Confidence 8753
No 57
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=49.87 E-value=24 Score=27.96 Aligned_cols=62 Identities=18% Similarity=0.077 Sum_probs=39.4
Q ss_pred Cccc-cEEEccCCC-CChHHHHHHHhcC-CceeeCC-C---CCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 26 LYWP-DLVTGDFDS-VSSNSMGRFLALG-SDIVPTP-D---QSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 26 ~~~P-d~iiGDfDS-i~~~~~~~~~~~g-~~i~~~p-d---kD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
+-.| -++||-.|| +.++..-. ...| ..+++-. . .+..+..-+|+|+..+.+.+.|+|+|=.+
T Consensus 22 gQ~P~~~vi~CsDSRv~pe~if~-~~~GdlFViRnaGN~v~~~~~~~~asleyAv~~L~v~~IvV~GHs~ 90 (182)
T cd00883 22 GQTPEYLWIGCSDSRVPENTILG-LLPGEVFVHRNIANLVSPTDLNCLSVLQYAVDVLKVKHIIVCGHYG 90 (182)
T ss_pred CCCCCEEEEEecCCCCCHHHhcC-CCCCCEEEEEeeccccCCCCcchhhhHHHHHHhcCCCEEEEecCCC
Confidence 4555 578999999 66654321 1123 3333321 1 23456789999998888999999997443
No 58
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=48.95 E-value=27 Score=28.00 Aligned_cols=61 Identities=16% Similarity=0.087 Sum_probs=39.0
Q ss_pred Cccc-cEEEccCCC-CChHHHHHHHhcC-CceeeC-----C-C-C--CccHHHHHHHHHHhhcCCCEEEEEEcC
Q psy16241 26 LYWP-DLVTGDFDS-VSSNSMGRFLALG-SDIVPT-----P-D-Q--SYTDFQKAVMEITKREKIDYLISIVEF 87 (186)
Q Consensus 26 ~~~P-d~iiGDfDS-i~~~~~~~~~~~g-~~i~~~-----p-d-k--D~TD~e~Al~~~~~~~~~~~i~v~G~~ 87 (186)
+-.| -++||-.|| +.++.+-. ...| +.+++- | . . +++....+|+|+..+.+.+.|+|+|=.
T Consensus 23 gQ~P~~~~i~C~DsRv~~~~i~~-~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleyav~~l~v~~ivV~GH~ 95 (190)
T cd00884 23 GQSPKALFIACSDSRVVPALITQ-TQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYAVAVLKVEHIVVCGHS 95 (190)
T ss_pred CCCCCeEEEeeeCCCCCHHHHcC-CCCCCEEEEeccCCcCCcccccccccchhhhHHHHHHHhCCCEEEEeCCC
Confidence 5666 568999999 66654321 1123 222231 2 1 1 345578899999988899999999744
No 59
>PLN02335 anthranilate synthase
Probab=48.69 E-value=38 Score=27.58 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=36.4
Q ss_pred EEEccC-CCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCc
Q psy16241 31 LVTGDF-DSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGR 90 (186)
Q Consensus 31 ~iiGDf-DSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR 90 (186)
++| |+ ||.+-...++++++|+.+...+. |..+.+. ... ..++-|++.|+-|.=
T Consensus 22 lvi-D~~dsft~~i~~~L~~~g~~~~v~~~-~~~~~~~----~~~-~~~d~iVisgGPg~p 75 (222)
T PLN02335 22 IVI-DNYDSFTYNLCQYMGELGCHFEVYRN-DELTVEE----LKR-KNPRGVLISPGPGTP 75 (222)
T ss_pred EEE-ECCCCHHHHHHHHHHHCCCcEEEEEC-CCCCHHH----HHh-cCCCEEEEcCCCCCh
Confidence 444 76 99999999999999988877653 2222222 122 457788888888863
No 60
>KOG3849|consensus
Probab=48.00 E-value=28 Score=30.08 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=0.0
Q ss_pred EEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHHHHH-HHHHHhc
Q psy16241 31 LVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSN-INTLYKS 104 (186)
Q Consensus 31 ~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~l~n-i~~l~~~ 104 (186)
.+--|-|++=++.-+.+...++++.+.+ |.-+||+..- ||.||+++| ++++..+
T Consensus 304 fVAsDs~hmi~Eln~aL~~~~i~vh~l~pdd~y~dLaIl--------------------GqadhFiGNCvSsfsaf 359 (386)
T KOG3849|consen 304 FVASDSDHMIDELNEALKPYEIEVHRLEPDDMYTDLAIL--------------------GQADHFIGNCVSSFSAF 359 (386)
T ss_pred EEeccchhhhHHHHHhhcccceeEEecCcccchhhhhhh--------------------cccchhhhhhHHHHHHH
No 61
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=47.28 E-value=37 Score=25.59 Aligned_cols=57 Identities=12% Similarity=0.017 Sum_probs=35.1
Q ss_pred EEEccCCC-CChHHHHHHHhcC-CceeeCC-C---CCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 31 LVTGDFDS-VSSNSMGRFLALG-SDIVPTP-D---QSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 31 ~iiGDfDS-i~~~~~~~~~~~g-~~i~~~p-d---kD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
+++|-.|| +.++..-... .| .-+++-. . ..+.++.-+|+++....+.++|+|+|=.+
T Consensus 2 ~vi~C~DsR~~~~~~~~~~-~Gd~fviRnaGn~v~~~~~~~~~sle~av~~l~v~~IiV~gHt~ 64 (153)
T PF00484_consen 2 LVITCSDSRVPPEEIFGLK-PGDLFVIRNAGNRVPPPDDSALASLEYAVYHLGVKEIIVCGHTD 64 (153)
T ss_dssp EEEEETTTTSTHHHHHTS--TTSEEEEEETTG---TT-HHHHHHHHHHHHTST-SEEEEEEETT
T ss_pred EEEEEcCCCCCHHHHhCCC-CcceeeeeEEeeecCccccchhhheeeeeecCCCCEEEEEcCCC
Confidence 46777788 4444332111 22 3334422 2 23778889999999889999999999766
No 62
>PF12367 PFO_beta_C: Pyruvate ferredoxin oxidoreductase beta subunit C terminal
Probab=46.16 E-value=34 Score=22.88 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHh
Q psy16241 42 NSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITK 74 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~ 74 (186)
+..+||+++ +.+++ +-|-+|.+.|++.|.+
T Consensus 8 nT~~wY~~r---vy~l~e~~Dp~d~~~A~~~a~e 38 (67)
T PF12367_consen 8 NTYDWYKER---VYKLDEDHDPSDREAAMEKARE 38 (67)
T ss_pred chHHHHHHh---eEECCCCCCchhHHHHHHHHHh
Confidence 346788875 44554 7899999999999987
No 63
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=46.09 E-value=53 Score=25.26 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=35.9
Q ss_pred hHHHHHHHhcCCceeeC-C----CCCccHHHHHHHHHHhhcCCCEEEEEEcCC-C
Q psy16241 41 SNSMGRFLALGSDIVPT-P----DQSYTDFQKAVMEITKREKIDYLISIVEFN-G 89 (186)
Q Consensus 41 ~~~~~~~~~~g~~i~~~-p----dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-g 89 (186)
+.++++++++|.+++.+ + .-|+.|+..++-.+.....++.-++++++| |
T Consensus 14 ~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG 68 (144)
T TIGR00689 14 SEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIG 68 (144)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHH
Confidence 34567888889888874 3 237888888887777645577888888888 5
No 64
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=45.43 E-value=38 Score=32.94 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=44.5
Q ss_pred ccccEEEccCCCCChHH-HHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHHHHHHHHHHhcC
Q psy16241 27 YWPDLVTGDFDSVSSNS-MGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSS 105 (186)
Q Consensus 27 ~~Pd~iiGDfDSi~~~~-~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~ 105 (186)
=.|-+|+|||-|...+. ++.++..| +..++++..- .+-..=+++-+.-|-|||.|+|-++..+-.
T Consensus 674 d~~~viLGD~N~y~~edpI~~l~~aG------------y~~l~~~~~~--~~~~YSY~f~G~~gtLDhaLas~sl~~~v~ 739 (798)
T COG2374 674 DADIVILGDFNDYAFEDPIQALEGAG------------YMNLAARFHD--AGDRYSYVFNGQSGTLDHALASASLAAQVS 739 (798)
T ss_pred CCCEEEEeccchhhhccHHHHHhhcC------------chhhhhhccC--CCCceEEEECCccchHhhhhhhhhhhhhcc
Confidence 46778999999965443 34455433 2223333321 134456888888899999999977666555
Q ss_pred -CCEEEEc
Q psy16241 106 -LPIYLLS 112 (186)
Q Consensus 106 -~~i~l~~ 112 (186)
...|=|.
T Consensus 740 ~a~ewHIN 747 (798)
T COG2374 740 GATEWHIN 747 (798)
T ss_pred Cceeeeec
Confidence 3344333
No 65
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=45.38 E-value=1.5e+02 Score=26.23 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=53.1
Q ss_pred ccCCCCChHHHHHHHhcCCceeeCCCCCc--------------cHHHHHHHHHHhhcCCCEE---EEEEcCCCchhHHHH
Q psy16241 34 GDFDSVSSNSMGRFLALGSDIVPTPDQSY--------------TDFQKAVMEITKREKIDYL---ISIVEFNGRLDHCMS 96 (186)
Q Consensus 34 GDfDSi~~~~~~~~~~~g~~i~~~pdkD~--------------TD~e~Al~~~~~~~~~~~i---~v~G~~GgR~DH~l~ 96 (186)
.+.++++++.++.+++.|+..+.+--|.+ -|...|++.+.+ .|++.+ +++|.-|--.++...
T Consensus 108 ~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~-~G~~~v~~dlI~GlPgqt~e~~~~ 186 (400)
T PRK07379 108 IDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQ-AGIENFSLDLISGLPHQTLEDWQA 186 (400)
T ss_pred eCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHH-cCCCeEEEEeecCCCCCCHHHHHH
Confidence 57789999999999998877666544444 346667887776 688744 456767778889888
Q ss_pred HHHHHHhcC
Q psy16241 97 NINTLYKSS 105 (186)
Q Consensus 97 ni~~l~~~~ 105 (186)
.+..+....
T Consensus 187 tl~~~~~l~ 195 (400)
T PRK07379 187 SLEAAIALN 195 (400)
T ss_pred HHHHHHcCC
Confidence 888888776
No 66
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=44.50 E-value=52 Score=25.51 Aligned_cols=62 Identities=13% Similarity=-0.003 Sum_probs=39.7
Q ss_pred CccccE-EEccCCC-CChHHHHHHHhcC-CceeeCC-CCCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 26 LYWPDL-VTGDFDS-VSSNSMGRFLALG-SDIVPTP-DQSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 26 ~~~Pd~-iiGDfDS-i~~~~~~~~~~~g-~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
+-.|++ +|+..|| +.++.+-- .+.| +.+++-. ..=..+.--+|+++....+.++|+|+|=++
T Consensus 36 ~q~P~~~vitC~DsRv~~~~i~~-~~~Gd~fviRn~gn~v~~~~~~sl~yav~~l~v~~IvV~GHt~ 101 (154)
T cd03378 36 GQKPFAVILSCSDSRVPPEIIFD-QGLGDLFVVRVAGNIVDDDVLGSLEYAVEVLGVPLVVVLGHES 101 (154)
T ss_pred CCCCcEEEEEcCCCCCCHHHHcC-CCCCCEEEEeccccccChhHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 456755 5999999 55543321 1223 3344432 332235677888888878999999999777
No 67
>KOG2371|consensus
Probab=44.46 E-value=45 Score=29.84 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=44.5
Q ss_pred EEccCCCCChHHHHHHHhcCCceee---CCCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHH
Q psy16241 32 VTGDFDSVSSNSMGRFLALGSDIVP---TPDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCM 95 (186)
Q Consensus 32 iiGDfDSi~~~~~~~~~~~g~~i~~---~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l 95 (186)
.++|+|+ ..+++.+.++|...+. .|| |.|+++.+|..+.+ -.+-|+-.|+.| |+-|-+=
T Consensus 211 ~v~~~n~--s~l~~l~~~~Gf~~i~~gvv~D-~~~~i~e~L~e~~~--~aDvIlTtGGvsm~~~D~~~ 273 (411)
T KOG2371|consen 211 MVRDSNR--SQLLELFQEHGFTAIDAGVVPD-DVTRIKEKLREASS--FADVILTTGGVSMGPRDVTK 273 (411)
T ss_pred eeeecch--HHHHHHHHHhCccccccccccC-cHHHHHHHHHHhhh--hccEEEecCCccccchhhhh
Confidence 4667766 6777888888877665 355 99999999999886 367778888888 6777643
No 68
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=44.11 E-value=68 Score=25.74 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=31.5
Q ss_pred hHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEc
Q psy16241 41 SNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVE 86 (186)
Q Consensus 41 ~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~ 86 (186)
++..+.++++|+.++..++ ...|+..+++.+.+ .|..+|.|-|+
T Consensus 102 ~~~~~~l~~~gv~vi~~~~-~~~dl~~~l~~L~~-~g~~~vlveGG 145 (210)
T TIGR01508 102 EEKVEELEDKGVEVVKFGE-GRVDLKKLLDILYD-KGVRRLMVEGG 145 (210)
T ss_pred HHHHHHHHHCCCEEEEeCC-CCcCHHHHHHHHHH-CCCCEEEEeeC
Confidence 4445667777887765543 24788889998876 79999888774
No 69
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=43.48 E-value=1.9e+02 Score=25.17 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=53.5
Q ss_pred ccCCCCChHHHHHHHhcCCceeeCCCCCccH--------------HHHHHHHHHhhcCCCEE---EEEEcCCCchhHHHH
Q psy16241 34 GDFDSVSSNSMGRFLALGSDIVPTPDQSYTD--------------FQKAVMEITKREKIDYL---ISIVEFNGRLDHCMS 96 (186)
Q Consensus 34 GDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD--------------~e~Al~~~~~~~~~~~i---~v~G~~GgR~DH~l~ 96 (186)
.+.++++++.++.+++.|+..+.+.-|...| ...|++.+.+ .|++.+ +++|-.|--.++...
T Consensus 101 ~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~-~g~~~v~~dli~GlPgqt~~~~~~ 179 (375)
T PRK05628 101 ANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARA-AGFEHVNLDLIYGTPGESDDDWRA 179 (375)
T ss_pred eCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHH-cCCCcEEEEEeccCCCCCHHHHHH
Confidence 5889999999999999998877776555543 4456666665 577744 567777778888888
Q ss_pred HHHHHHhcC
Q psy16241 97 NINTLYKSS 105 (186)
Q Consensus 97 ni~~l~~~~ 105 (186)
.+..+....
T Consensus 180 tl~~~~~l~ 188 (375)
T PRK05628 180 SLDAALEAG 188 (375)
T ss_pred HHHHHHhcC
Confidence 888888776
No 70
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=42.92 E-value=52 Score=26.80 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=37.8
Q ss_pred Cccc-cEEEccCCC-CChHHHHHHHhcC-Cceee-----CCCCCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 26 LYWP-DLVTGDFDS-VSSNSMGRFLALG-SDIVP-----TPDQSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 26 ~~~P-d~iiGDfDS-i~~~~~~~~~~~g-~~i~~-----~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
+-.| -++||-.|| +.++...... .| ..+++ .|. ++-+.--+|++|....+.++|+|+|=.+
T Consensus 33 ~Q~P~~lii~C~DSRv~~e~i~~~~-pGdlfV~RNaGniV~~-~~~~~l~sleyAv~~L~v~~IiV~GH~~ 101 (207)
T COG0288 33 GQSPKALIITCSDSRVPPELITGLG-PGDLFVIRNAGNIVTH-PDGSVLRSLEYAVYVLGVKEIIVCGHTD 101 (207)
T ss_pred CCCCcEEEEEEccCCCCHHHHhCCC-CccEEEEeecccccCC-CccchhHHHHHHHHHcCCCEEEEecCCC
Confidence 3556 578999999 5544432111 12 33333 121 2246667788888878999999998554
No 71
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=42.73 E-value=2.3e+02 Score=24.73 Aligned_cols=73 Identities=12% Similarity=0.052 Sum_probs=54.0
Q ss_pred EEccCCCCChHHHHHHHhcCCceeeCCCCCcc--------------HHHHHHHHHHhhcCCCEE---EEEEcCCCchhHH
Q psy16241 32 VTGDFDSVSSNSMGRFLALGSDIVPTPDQSYT--------------DFQKAVMEITKREKIDYL---ISIVEFNGRLDHC 94 (186)
Q Consensus 32 iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~T--------------D~e~Al~~~~~~~~~~~i---~v~G~~GgR~DH~ 94 (186)
+-.+-++++++.++.+++.|+..+.+.-|... |...|++.+.+ .|+..| +++|..|--.++.
T Consensus 94 iE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~-~G~~~v~~dlI~GlPgqt~e~~ 172 (353)
T PRK05904 94 IECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHK-NGIYNISCDFLYCLPILKLKDL 172 (353)
T ss_pred EEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHH-cCCCcEEEEEeecCCCCCHHHH
Confidence 44577888999999999888776665544443 56667787776 576633 5778888888888
Q ss_pred HHHHHHHHhcC
Q psy16241 95 MSNINTLYKSS 105 (186)
Q Consensus 95 l~ni~~l~~~~ 105 (186)
...+..+.+..
T Consensus 173 ~~tl~~~~~l~ 183 (353)
T PRK05904 173 DEVFNFILKHK 183 (353)
T ss_pred HHHHHHHHhcC
Confidence 88888888776
No 72
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=41.72 E-value=2.6e+02 Score=25.79 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=55.8
Q ss_pred EccCCCCChHHHHHHHhcCCceeeCCCCCcc--------------HHHHHHHHHHhhcCCCEE---EEEEcCCCchhHHH
Q psy16241 33 TGDFDSVSSNSMGRFLALGSDIVPTPDQSYT--------------DFQKAVMEITKREKIDYL---ISIVEFNGRLDHCM 95 (186)
Q Consensus 33 iGDfDSi~~~~~~~~~~~g~~i~~~pdkD~T--------------D~e~Al~~~~~~~~~~~i---~v~G~~GgR~DH~l 95 (186)
.|.-|+++++.++.+++.|+..+.+.-|... +...|++.+.+ .|++.| +++|-.|-..++..
T Consensus 261 ~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~-~Gf~~In~DLI~GLPgEt~ed~~ 339 (488)
T PRK08207 261 AGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLARE-MGFDNINMDLIIGLPGEGLEEVK 339 (488)
T ss_pred cCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHh-CCCCeEEEEEEeCCCCCCHHHHH
Confidence 3899999999999999999877776544444 45667777776 688643 46777787899988
Q ss_pred HHHHHHHhcC
Q psy16241 96 SNINTLYKSS 105 (186)
Q Consensus 96 ~ni~~l~~~~ 105 (186)
..+..+....
T Consensus 340 ~tl~~l~~L~ 349 (488)
T PRK08207 340 HTLEEIEKLN 349 (488)
T ss_pred HHHHHHHhcC
Confidence 8899888876
No 73
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=41.43 E-value=2e+02 Score=25.74 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=53.9
Q ss_pred ccCCCCChHHHHHHHhcCCceeeCCCCCcc--------------HHHHHHHHHHhhcCCCEE---EEEEcCCCchhHHHH
Q psy16241 34 GDFDSVSSNSMGRFLALGSDIVPTPDQSYT--------------DFQKAVMEITKREKIDYL---ISIVEFNGRLDHCMS 96 (186)
Q Consensus 34 GDfDSi~~~~~~~~~~~g~~i~~~pdkD~T--------------D~e~Al~~~~~~~~~~~i---~v~G~~GgR~DH~l~ 96 (186)
.+-++++++.++.+++.|+..+.+.-|... +...|++.+.+ .|++.| +++|..|--.++...
T Consensus 134 ~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~-~g~~~i~~dlI~GlP~qt~e~~~~ 212 (430)
T PRK08208 134 TSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRA-AGFPILNIDLIYGIPGQTHASWME 212 (430)
T ss_pred eCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHH-cCCCeEEEEeecCCCCCCHHHHHH
Confidence 678889999999999988777665544443 46667888776 687764 567778878888888
Q ss_pred HHHHHHhcC
Q psy16241 97 NINTLYKSS 105 (186)
Q Consensus 97 ni~~l~~~~ 105 (186)
.+..+....
T Consensus 213 ~l~~~~~l~ 221 (430)
T PRK08208 213 SLDQALVYR 221 (430)
T ss_pred HHHHHHhCC
Confidence 888888776
No 74
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=41.23 E-value=95 Score=22.87 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=43.9
Q ss_pred ccccEEEccCCC--CChHHHHHHHhcCCceeeCC------CCCccHHHHHHHHHHhh--cCCCEEEEEEcCCC
Q psy16241 27 YWPDLVTGDFDS--VSSNSMGRFLALGSDIVPTP------DQSYTDFQKAVMEITKR--EKIDYLISIVEFNG 89 (186)
Q Consensus 27 ~~Pd~iiGDfDS--i~~~~~~~~~~~g~~i~~~p------dkD~TD~e~Al~~~~~~--~~~~~i~v~G~~Gg 89 (186)
+.--.+.++++. ......+.+++.|..++..| .|..+|..+|++..... ..++.|+++.+-+.
T Consensus 39 ~~~~r~y~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~D 111 (149)
T cd06167 39 IVLARAYGNWTSPERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSD 111 (149)
T ss_pred EEEEEEEEecCCchhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCcc
Confidence 334456677764 45556678888998887643 58999999997754332 46788888887663
No 75
>KOG4357|consensus
Probab=40.23 E-value=20 Score=27.20 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=34.0
Q ss_pred CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeeeEEecceEecC
Q psy16241 106 LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLN 164 (186)
Q Consensus 106 ~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~~Glky~L~ 164 (186)
....+++++..||+++ .|.+.+..+.-+ .++ +.|..||++|--|+=.
T Consensus 106 lq~fii~ddraifm~k--dge~a~e~k~fl--l~q--------d~~advtiegq~f~g~ 152 (164)
T KOG4357|consen 106 LQRFIIDDDRAIFMFK--DGEQAFEAKDFL--LGQ--------DFCADVTIEGQSFDGK 152 (164)
T ss_pred eEEEEecCCeEEEEEe--ChhHHHHHHHHh--hcc--------chheeeeecceeccCC
Confidence 7888999999999999 998766544222 222 3356799999888754
No 76
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.03 E-value=69 Score=25.59 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=21.6
Q ss_pred CccccEEEccCCCCChHHHHHHHhcCCceeeC
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLALGSDIVPT 57 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~ 57 (186)
.+.||+|++.--+-.....+.+++.|+.++..
T Consensus 55 ~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~ 86 (245)
T cd01144 55 ALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVS 86 (245)
T ss_pred hCCCCEEEEecCCCHHHHHHHHHHcCCcEEEe
Confidence 47899999864332333477888888776654
No 77
>PRK15219 carbonic anhydrase; Provisional
Probab=39.98 E-value=51 Score=27.60 Aligned_cols=62 Identities=10% Similarity=0.057 Sum_probs=41.0
Q ss_pred Cccc-cEEEccCCC-CChHHHHHHHhcC-CceeeCC-CCCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 26 LYWP-DLVTGDFDS-VSSNSMGRFLALG-SDIVPTP-DQSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 26 ~~~P-d~iiGDfDS-i~~~~~~~~~~~g-~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
|-.| -++||=.|| +.++.+-- ...| .-+++-. ..-.+|..-+|+|+....+.+.|+|+|=.+
T Consensus 87 gQ~P~a~vi~CsDSRV~pe~ifd-~~~GdlFvvRnaGN~v~~~~~~slEyAv~~L~v~~IvVlGHt~ 152 (245)
T PRK15219 87 GQYPAAVILSCIDSRAPAEIILD-TGIGETFNSRVAGNISNDDLLGSMEFACAVAGAKVVLVMGHTA 152 (245)
T ss_pred CCCCeEEEEecccCCCCHHHHhC-CCCCcEEEEeccccccCcchhhHHHHHHHHcCCCEEEEecCCc
Confidence 5566 468899999 66655421 2233 3334432 332356778999999989999999997553
No 78
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=39.43 E-value=93 Score=25.51 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=37.6
Q ss_pred ChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCc--hhHHH
Q psy16241 40 SSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGR--LDHCM 95 (186)
Q Consensus 40 ~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR--~DH~l 95 (186)
.+...+.+++.|......|+ +++..+++........+-++|.++.+.+|| +.+.|
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~-~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L 142 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPE-DGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKL 142 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCC-ccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHH
Confidence 37777888888987777777 555555555544432224799999999999 44444
No 79
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=39.42 E-value=2.5e+02 Score=24.55 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=54.0
Q ss_pred EccCCCCChHHHHHHHhcCCceeeCCCCCc--------------cHHHHHHHHHHhhcCCCEE---EEEEcCCCchhHHH
Q psy16241 33 TGDFDSVSSNSMGRFLALGSDIVPTPDQSY--------------TDFQKAVMEITKREKIDYL---ISIVEFNGRLDHCM 95 (186)
Q Consensus 33 iGDfDSi~~~~~~~~~~~g~~i~~~pdkD~--------------TD~e~Al~~~~~~~~~~~i---~v~G~~GgR~DH~l 95 (186)
=.+.++++++.++.+++.|+..+.+--|.. .+...|++.+.+ .|+..| +++|-.|-..++..
T Consensus 95 E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~-~g~~~v~~Dli~GlPgqt~~~~~ 173 (370)
T PRK06294 95 EANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSE-HGFSNLSIDLIYGLPTQSLSDFI 173 (370)
T ss_pred EeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHH-cCCCeEEEEeecCCCCCCHHHHH
Confidence 346788999999999998877666544443 346667887776 687643 56788888999998
Q ss_pred HHHHHHHhcC
Q psy16241 96 SNINTLYKSS 105 (186)
Q Consensus 96 ~ni~~l~~~~ 105 (186)
..+..+....
T Consensus 174 ~~l~~~~~l~ 183 (370)
T PRK06294 174 VDLHQAITLP 183 (370)
T ss_pred HHHHHHHccC
Confidence 8898888776
No 80
>KOG1252|consensus
Probab=39.38 E-value=1.1e+02 Score=27.28 Aligned_cols=82 Identities=12% Similarity=0.117 Sum_probs=53.5
Q ss_pred CCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhh----------------------------------cCCCE
Q psy16241 36 FDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKR----------------------------------EKIDY 80 (186)
Q Consensus 36 fDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~----------------------------------~~~~~ 80 (186)
-++++.+-...++..|.++++.| .+-.+--|.|+..+.+- .+...
T Consensus 135 P~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vD 214 (362)
T KOG1252|consen 135 PEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVD 214 (362)
T ss_pred chhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCC
Confidence 46788887888999999999965 55444436666655332 13347
Q ss_pred EEEEE-cCCCchhHHHHHHHHHHh-cC--CCEEEEcCCeEEEEEe
Q psy16241 81 LISIV-EFNGRLDHCMSNINTLYK-SS--LPIYLLSAKYMSWVLR 121 (186)
Q Consensus 81 i~v~G-~~GgR~DH~l~ni~~l~~-~~--~~i~l~~~~~~i~~l~ 121 (186)
++|.| ++|| |+.-+.=.++ +. ++|+..|++.-+++-.
T Consensus 215 i~V~gaGTGG----TitgvGRylke~~~~~kVv~vdp~~S~~~~~ 255 (362)
T KOG1252|consen 215 IFVAGAGTGG----TITGVGRYLKEQNPNIKVVGVDPQESIVLSG 255 (362)
T ss_pred EEEeccCCCc----eeechhHHHHHhCCCCEEEEeCCCcceeccC
Confidence 88888 5666 3344443333 22 8899999988876543
No 81
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=39.21 E-value=47 Score=22.58 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=33.9
Q ss_pred EccCCCCChHHHHHHHhcCCce---eeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCc
Q psy16241 33 TGDFDSVSSNSMGRFLALGSDI---VPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGR 90 (186)
Q Consensus 33 iGDfDSi~~~~~~~~~~~g~~i---~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR 90 (186)
..||...+..+.+.+.+.|... ..+|..+.+-.+.|++.+.+ ++ +.+|-+|+|
T Consensus 8 ~~Dl~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~---cD--ifI~ilG~r 63 (83)
T PF13271_consen 8 FRDLKEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDE---CD--IFILILGNR 63 (83)
T ss_pred hhhHHHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhh---CC--EEEEeeccc
Confidence 3566666777777777666333 23576688889999998854 44 334455554
No 82
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=38.84 E-value=76 Score=24.37 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=35.4
Q ss_pred cCCCCChHHHHHHHhcCCceee--CC-CCCccHHHHHHHHHHhhcCCCEEEEEEcCCCc-hhH
Q psy16241 35 DFDSVSSNSMGRFLALGSDIVP--TP-DQSYTDFQKAVMEITKREKIDYLISIVEFNGR-LDH 93 (186)
Q Consensus 35 DfDSi~~~~~~~~~~~g~~i~~--~p-dkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR-~DH 93 (186)
|+-|+-...++... .|+++.+ .| -|| +--|-+.+.+..||+-++.+|.-|.+ .|.
T Consensus 15 dMg~vai~~lk~~~-~~~~i~R~TVPGIKd---lpvaakrLieeeGCd~Vi~lG~~G~t~~Dk 73 (154)
T COG1731 15 DMGSVAIDELKKLL-PGIKIKRYTVPGIKD---LPVAAKRLIEEEGCDIVIALGWVGPTEKDK 73 (154)
T ss_pred cchHHHHHHHHhhC-CCCceEEeeCCCccc---ChHHHHHHHHhcCCcEEEEccCcCcchhhH
Confidence 55565555544332 3567776 46 565 44555555555899999999999985 443
No 83
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=38.49 E-value=93 Score=27.08 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=43.8
Q ss_pred cccEEEccCCCCC-----hHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHH
Q psy16241 28 WPDLVTGDFDSVS-----SNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHC 94 (186)
Q Consensus 28 ~Pd~iiGDfDSi~-----~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~ 94 (186)
+.-++|.|=.+.. +.+.+.+++.|+.+..+ |+....+.+.+++.+.+ .+++-|+-+|+ |.-+|-.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGG-GSviD~a 99 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKK-FNADFVIGIGG-GSPLDAA 99 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-chHHHHH
Confidence 4556777644422 55667787778777654 46777888999999887 68887766653 3357764
No 84
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=37.93 E-value=2.8e+02 Score=24.51 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=65.0
Q ss_pred ccccEEEccCCCCChHHHHHHHhcCCceeeCCC--CCccHHHHHHHHHHhhcCCCEEEEE--EcCC----CchhHHHHHH
Q psy16241 27 YWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPD--QSYTDFQKAVMEITKREKIDYLISI--VEFN----GRLDHCMSNI 98 (186)
Q Consensus 27 ~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pd--kD~TD~e~Al~~~~~~~~~~~i~v~--G~~G----gR~DH~l~ni 98 (186)
+.+=+-||=++...-..++...+.|.+|+...- -+-.|.+.|++++.+ .|.++|+++ |... +|-+==|..|
T Consensus 201 ~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~-~Gn~~i~L~erg~s~yp~~~~~~ldl~~i 279 (360)
T PRK12595 201 YVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMS-QGNGQIILCERGIRTYEKATRNTLDISAV 279 (360)
T ss_pred hCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHH-CCCCCEEEECCccCCCCCCCCCCcCHHHH
Confidence 477788999999999999999999988887543 488899999999997 698888888 6554 5666656777
Q ss_pred HHHHh-cCCCEEE
Q psy16241 99 NTLYK-SSLPIYL 110 (186)
Q Consensus 99 ~~l~~-~~~~i~l 110 (186)
..|-. +..+|.+
T Consensus 280 ~~lk~~~~~PV~~ 292 (360)
T PRK12595 280 PILKQETHLPVMV 292 (360)
T ss_pred HHHHHHhCCCEEE
Confidence 77766 3366665
No 85
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=37.84 E-value=79 Score=24.88 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=33.0
Q ss_pred CccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCc-cHHHHHHHHHHh
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSY-TDFQKAVMEITK 74 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~-TD~e~Al~~~~~ 74 (186)
...||+|++....-..+......+.+++++.+..... .|....++.+-+
T Consensus 58 ~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~ 107 (238)
T PF01497_consen 58 ALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGK 107 (238)
T ss_dssp HT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHH
Confidence 3789999998777445555667778999988765444 677777766554
No 86
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=37.51 E-value=1.1e+02 Score=23.38 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=30.3
Q ss_pred CccccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHh
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITK 74 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~ 74 (186)
...||+|++.- +..+...+.+++.|.+++.++ ..+.-|....++.+-+
T Consensus 58 ~l~PDlii~~~-~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~ 106 (195)
T cd01143 58 ALKPDLVIVSS-SSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGK 106 (195)
T ss_pred ccCCCEEEEcC-CcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 47899999853 233456678888888776654 3334455555555444
No 87
>PRK05660 HemN family oxidoreductase; Provisional
Probab=37.38 E-value=2.9e+02 Score=24.28 Aligned_cols=72 Identities=8% Similarity=0.114 Sum_probs=53.7
Q ss_pred EccCCCCChHHHHHHHhcCCceeeCCCCCcc--------------HHHHHHHHHHhhcCCCEE---EEEEcCCCchhHHH
Q psy16241 33 TGDFDSVSSNSMGRFLALGSDIVPTPDQSYT--------------DFQKAVMEITKREKIDYL---ISIVEFNGRLDHCM 95 (186)
Q Consensus 33 iGDfDSi~~~~~~~~~~~g~~i~~~pdkD~T--------------D~e~Al~~~~~~~~~~~i---~v~G~~GgR~DH~l 95 (186)
-.+-++++++.++.+++.|+..+.+--|... +...|++.+.+ .|++.| +++|-.|--.++..
T Consensus 99 e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~-~G~~~v~~dli~Glpgqt~~~~~ 177 (378)
T PRK05660 99 EANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQG-LGLRSFNLDLMHGLPDQSLEEAL 177 (378)
T ss_pred EeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHH-cCCCeEEEEeecCCCCCCHHHHH
Confidence 3467888888889999888776665444443 44557777776 688754 67888888899999
Q ss_pred HHHHHHHhcC
Q psy16241 96 SNINTLYKSS 105 (186)
Q Consensus 96 ~ni~~l~~~~ 105 (186)
..+..+....
T Consensus 178 ~~l~~~~~l~ 187 (378)
T PRK05660 178 DDLRQAIALN 187 (378)
T ss_pred HHHHHHHhcC
Confidence 9999888876
No 88
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=37.37 E-value=1.1e+02 Score=23.57 Aligned_cols=57 Identities=14% Similarity=0.320 Sum_probs=35.4
Q ss_pred cEEEccCCCCChHHHH-HHHhcCCceeeCCCC-------CccHHH--HHHHHHHhhcCCCEEEE-EEc
Q psy16241 30 DLVTGDFDSVSSNSMG-RFLALGSDIVPTPDQ-------SYTDFQ--KAVMEITKREKIDYLIS-IVE 86 (186)
Q Consensus 30 d~iiGDfDSi~~~~~~-~~~~~g~~i~~~pdk-------D~TD~e--~Al~~~~~~~~~~~i~v-~G~ 86 (186)
-+||||-|-|...+++ .++..|.+++...-+ -..|+| +=++.+.+++|.+.++| +|+
T Consensus 8 viiiGdRDGiPgpAie~c~~~~gaevvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~ 75 (150)
T PF04723_consen 8 VIIIGDRDGIPGPAIEECVKTAGAEVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGA 75 (150)
T ss_pred EEEEecCCCCCcHHHHHHHHhcCceEEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecC
Confidence 4789999999988885 566667766643322 235554 34444555577766544 443
No 89
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=37.03 E-value=1.1e+02 Score=26.88 Aligned_cols=66 Identities=12% Similarity=0.043 Sum_probs=43.8
Q ss_pred ccccEEEccCCCCC-----hHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHH
Q psy16241 27 YWPDLVTGDFDSVS-----SNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHC 94 (186)
Q Consensus 27 ~~Pd~iiGDfDSi~-----~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~ 94 (186)
...=++|.|=-+.. +...+.+++.|+++..+ |+++..+.+.+++.+.+ .+++-|+-+|+ |.-+|=.
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~iD~a 100 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGRE-FGAQAVIAIGG-GSPIDSA 100 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCC-ccHHHHH
Confidence 45667777744432 45567777778766654 46788889999999887 68876555553 2356653
No 90
>PLN02154 carbonic anhydrase
Probab=36.98 E-value=45 Score=28.77 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=40.0
Q ss_pred CCccc-cEEEccCCC-CChHHHHHHHhcC-CceeeC------C-CCCccHHHHHHHHHHhhcCCCEEEEEEcC
Q psy16241 25 ALYWP-DLVTGDFDS-VSSNSMGRFLALG-SDIVPT------P-DQSYTDFQKAVMEITKREKIDYLISIVEF 87 (186)
Q Consensus 25 ~~~~P-d~iiGDfDS-i~~~~~~~~~~~g-~~i~~~------p-dkD~TD~e~Al~~~~~~~~~~~i~v~G~~ 87 (186)
.+-.| -++||-.|| +.++.+-- ...| +-+++- | +..++.+..+|+|+....+.+.|+|+|=.
T Consensus 103 ~GQ~P~~lvi~C~DSRV~pe~if~-~~pGdlFvvRN~GNiv~~~~~g~~~~~aslEyAv~~L~v~~IvV~GHs 174 (290)
T PLN02154 103 IAQSPKVMVIGCADSRVCPSYVLG-FQPGEAFTIRNVANLVTPVQNGPTETNSALEFAVTTLQVENIIVMGHS 174 (290)
T ss_pred cCCCCCEEEEEecCCCCCHHHHcC-CCCCCEEEEeccCCccCCccCCccchhhHHHHHHHHhCCCEEEEecCC
Confidence 35556 578999999 66655421 1122 222221 2 23345678889999988899999999755
No 91
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=36.88 E-value=1.6e+02 Score=25.62 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=38.6
Q ss_pred ccccEEEccCCCCC----hHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEc
Q psy16241 27 YWPDLVTGDFDSVS----SNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVE 86 (186)
Q Consensus 27 ~~Pd~iiGDfDSi~----~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~ 86 (186)
...=++|.|=.+.. +.+.+.++++|+.+..+ ++.+..+.+.+++.+.+ .+++-|+-+|+
T Consensus 23 ~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~IiaiGG 89 (370)
T cd08551 23 GRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYRE-EGCDGVIAVGG 89 (370)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC
Confidence 33446676654443 35556777777766643 36788889999999887 67887554443
No 92
>PRK11914 diacylglycerol kinase; Reviewed
Probab=36.75 E-value=65 Score=27.20 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241 42 NSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNG 89 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg 89 (186)
+..+.+++.|.++..+..+..-|.+...+.+.+ .+++-|++.|+-|-
T Consensus 30 ~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~-~~~d~vvv~GGDGT 76 (306)
T PRK11914 30 RAIARLHHRGVDVVEIVGTDAHDARHLVAAALA-KGTDALVVVGGDGV 76 (306)
T ss_pred HHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHh-cCCCEEEEECCchH
Confidence 344567777877655443334566666665555 57888877777653
No 93
>PRK06455 riboflavin synthase; Provisional
Probab=36.62 E-value=86 Score=24.54 Aligned_cols=50 Identities=18% Similarity=0.297 Sum_probs=32.8
Q ss_pred hHHHHHHHhcC--Cce--eeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhH
Q psy16241 41 SNSMGRFLALG--SDI--VPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDH 93 (186)
Q Consensus 41 ~~~~~~~~~~g--~~i--~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH 93 (186)
..+++.+++++ ..+ ++.|- .=|+-.|++.+.+..+++-|+.+|+- ||-+|
T Consensus 18 ~gAi~~L~~~g~~~~I~v~~VPG--a~ELP~aakkL~~~~~yDaVIaLG~V-G~t~h 71 (155)
T PRK06455 18 SAAIDELRKLDPSAKIIRYTVPG--IKDLPVAAKKLIEEEGCDIVMALGMP-GPTEK 71 (155)
T ss_pred HHHHHHHHhcCCCCceEEEECCC--HHHHHHHHHHHHhcCCCCEEEEecce-eccCc
Confidence 34556666633 333 34572 33566777777765789999999999 55666
No 94
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=36.53 E-value=1.5e+02 Score=24.61 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=45.0
Q ss_pred HHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHHHHHHHHHHhcCCCEEEEcCC
Q psy16241 45 GRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAK 114 (186)
Q Consensus 45 ~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~~~i~l~~~~ 114 (186)
+..+++|-.++.....+..+.|.+++.+.+ +.++-+++.+.... .+| +..+.+...++++++..
T Consensus 25 ~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~-~~vDGiI~~s~~~~-~~~----l~~~~~~~iPvV~~~~~ 88 (279)
T PF00532_consen 25 QEAREHGYQLLLCNTGDDEEKEEYIELLLQ-RRVDGIILASSEND-DEE----LRRLIKSGIPVVLIDRY 88 (279)
T ss_dssp HHHHHTTCEEEEEEETTTHHHHHHHHHHHH-TTSSEEEEESSSCT-CHH----HHHHHHTTSEEEEESS-
T ss_pred HHHHHcCCEEEEecCCCchHHHHHHHHHHh-cCCCEEEEecccCC-hHH----HHHHHHcCCCEEEEEec
Confidence 455677877777776677888899999887 79999998844333 444 45555556688888776
No 95
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=36.49 E-value=2.8e+02 Score=24.01 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=51.8
Q ss_pred EccCCCCChHHHHHHHhcCCceeeCCCCCc--------------cHHHHHHHHHHhhcCCCEE---EEEEcCCCchhHHH
Q psy16241 33 TGDFDSVSSNSMGRFLALGSDIVPTPDQSY--------------TDFQKAVMEITKREKIDYL---ISIVEFNGRLDHCM 95 (186)
Q Consensus 33 iGDfDSi~~~~~~~~~~~g~~i~~~pdkD~--------------TD~e~Al~~~~~~~~~~~i---~v~G~~GgR~DH~l 95 (186)
=.+-++++++.++.+++.|+..+.+.-|.+ -+...|++.+.+ .|++.| +++|-.|--.+...
T Consensus 90 E~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~-~g~~~v~iDli~GlPgqt~~~~~ 168 (350)
T PRK08446 90 EANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKK-AGFENISIDLIYDTPLDNKKLLK 168 (350)
T ss_pred EeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHH-cCCCEEEEEeecCCCCCCHHHHH
Confidence 357788999999999988876665433333 345667777777 688755 56777776788888
Q ss_pred HHHHHHHhcC
Q psy16241 96 SNINTLYKSS 105 (186)
Q Consensus 96 ~ni~~l~~~~ 105 (186)
..+..+....
T Consensus 169 ~~l~~~~~l~ 178 (350)
T PRK08446 169 EELKLAKELP 178 (350)
T ss_pred HHHHHHHhcC
Confidence 8888877776
No 96
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=36.35 E-value=73 Score=24.04 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=33.1
Q ss_pred EEEccCCC-CChHHHHHHHhcC-CceeeCC-CCCccHHHHHHHHHHhhcCCCEEEEEEcC
Q psy16241 31 LVTGDFDS-VSSNSMGRFLALG-SDIVPTP-DQSYTDFQKAVMEITKREKIDYLISIVEF 87 (186)
Q Consensus 31 ~iiGDfDS-i~~~~~~~~~~~g-~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~i~v~G~~ 87 (186)
++++-+|| +.++..- =...| ..+++-. ..=..|.--+|.++....+.++|+|+|=.
T Consensus 6 ~vitC~DsRv~~e~i~-~~~~GdlfviRnaGn~V~~~~~~sl~~av~~l~~~~IiV~gHt 64 (142)
T cd03379 6 AIVTCMDARLDPEKAL-GLKLGDAKVIRNAGGRVTDDAIRSLVVSVYLLGTREIIVIHHT 64 (142)
T ss_pred EEEEEeCCCCCHHHHc-CCCCCcEEEEeccCCccCHhHHHHHHHHHHHhCCCEEEEEeec
Confidence 57788888 4443221 11122 2333433 22223677788888887899999999854
No 97
>KOG3043|consensus
Probab=35.99 E-value=91 Score=26.14 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=43.9
Q ss_pred CCccccEEEccCCCCChH--HH-HHHHhcCCceeeCCCCCccHHHHHHHHHHhhcC-CCEEEEEE-cCCCchhHHHHH
Q psy16241 25 ALYWPDLVTGDFDSVSSN--SM-GRFLALGSDIVPTPDQSYTDFQKAVMEITKREK-IDYLISIV-EFNGRLDHCMSN 97 (186)
Q Consensus 25 ~~~~Pd~iiGDfDSi~~~--~~-~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~-~~~i~v~G-~~GgR~DH~l~n 97 (186)
.-++||+.-||-=|.+.. .. +|.+. +.|++-.-|+..-++++.. .| ...|=++| ++||-+=+++.+
T Consensus 69 ~v~vPD~~~Gdp~~~~~~~~~~~~w~~~------~~~~~~~~~i~~v~k~lk~-~g~~kkIGv~GfCwGak~vv~~~~ 139 (242)
T KOG3043|consen 69 TVLVPDFFRGDPWSPSLQKSERPEWMKG------HSPPKIWKDITAVVKWLKN-HGDSKKIGVVGFCWGAKVVVTLSA 139 (242)
T ss_pred EEEcchhhcCCCCCCCCChhhhHHHHhc------CCcccchhHHHHHHHHHHH-cCCcceeeEEEEeecceEEEEeec
Confidence 348999999987776622 22 23332 3456666677777777776 56 78888888 788755554444
No 98
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=35.28 E-value=82 Score=23.42 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=33.8
Q ss_pred EEEcc----CCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEE
Q psy16241 31 LVTGD----FDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLI 82 (186)
Q Consensus 31 ~iiGD----fDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~ 82 (186)
+++|- +=|+++++.++++++++.++..|- --||+.-.+.++..+|.
T Consensus 65 ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT------~EAikr~nel~~~krV~ 114 (121)
T COG1504 65 IVVGTGQSGMLELSEEAREFFRKKGCEVIELPT------PEAIKRYNELRGKKRVA 114 (121)
T ss_pred EEEecCceeEEEeCHHHHHHHHhcCCeEEEeCC------HHHHHHHHHHhccceEE
Confidence 45664 567899999999999999998873 15777766555655554
No 99
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=34.86 E-value=77 Score=25.95 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=39.3
Q ss_pred ccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEc
Q psy16241 29 PDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVE 86 (186)
Q Consensus 29 Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~ 86 (186)
|-+++=.-. ++-++.+++.|+.++..| ...-|++.+++.+.+ +++.++.+=|+
T Consensus 99 p~~v~~~~~---~~~~~~~~~~g~~~i~~~-~~~vdl~~~l~~L~~-~~i~~vlvEGG 151 (218)
T COG1985 99 PTIVVTTEP---EEKLRELKEAGVEVILLP-DGRVDLAALLEELAE-RGINSVLVEGG 151 (218)
T ss_pred cEEEEecCc---hhhhhHHHhCCCEEEEcC-CCccCHHHHHHHHHh-CCCcEEEEccC
Confidence 444444333 444567788899999988 678899999999998 78998877554
No 100
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=34.59 E-value=1.8e+02 Score=25.63 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=44.3
Q ss_pred CccccEEEccCCCCC-----hHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHH
Q psy16241 26 LYWPDLVTGDFDSVS-----SNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHC 94 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~-----~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~ 94 (186)
|.+-=++|+| .|+. +.+.+.+++.|+.+..+ |+-..++.+.+++.+.+ .+++-|+-+|+ |.-+|=.
T Consensus 30 g~~~~livt~-~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~-~~~D~IiaiGG-GS~iD~A 104 (383)
T PRK09860 30 GFTRTLIVTD-NMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKE-NNCDSVISLGG-GSPHDCA 104 (383)
T ss_pred CCCEEEEEcC-cchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHH-cCCCEEEEeCC-chHHHHH
Confidence 4455567777 3432 24556777788766554 35677889999999987 68888766663 3367764
No 101
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=34.52 E-value=91 Score=24.41 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=39.6
Q ss_pred EEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchh
Q psy16241 31 LVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLD 92 (186)
Q Consensus 31 ~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~D 92 (186)
++|=..||.+-+..+.+++.|.++...+... ++.+. +.+ ..++-|++.|+-|+-.|
T Consensus 3 l~id~~dsf~~nl~~~l~~~~~~~~v~~~~~-~~~~~----~~~-~~~~~iilsgGP~~~~~ 58 (191)
T PRK06774 3 LLIDNYDSFTYNLYQYFCELGTEVMVKRNDE-LQLTD----IEQ-LAPSHLVISPGPCTPNE 58 (191)
T ss_pred EEEECCCchHHHHHHHHHHCCCcEEEEeCCC-CCHHH----HHh-cCCCeEEEcCCCCChHh
Confidence 5677789999999999999998887766321 22222 222 46788999999987434
No 102
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=34.37 E-value=92 Score=24.48 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=37.7
Q ss_pred EEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241 31 LVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNG 89 (186)
Q Consensus 31 ~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg 89 (186)
++|=-.||.+-+..+++++.|..+...|..+.+ .+ .+.+ ..++-|++.|+-|.
T Consensus 3 l~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~-~~----~~~~-~~~d~iilsgGpg~ 55 (188)
T TIGR00566 3 LMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLT-LQ----EIEA-LLPLLIVISPGPCT 55 (188)
T ss_pred EEEECCcCHHHHHHHHHHHcCCceEEEECCCCC-HH----HHHh-cCCCEEEEcCCCCC
Confidence 456678999999999999999887776643322 22 1222 45778999888886
No 103
>PRK13057 putative lipid kinase; Reviewed
Probab=34.18 E-value=78 Score=26.46 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=31.5
Q ss_pred ChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 40 SSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 40 ~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
-+...+.+++.|.++.....+...|.+.+.+.+. .+++.|++.|+-|
T Consensus 15 ~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~--~~~d~iiv~GGDG 61 (287)
T PRK13057 15 LAAARAALEAAGLELVEPPAEDPDDLSEVIEAYA--DGVDLVIVGGGDG 61 (287)
T ss_pred HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHH--cCCCEEEEECchH
Confidence 3456677888888776665556666666666543 4678777777655
No 104
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=33.80 E-value=1.7e+02 Score=25.77 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=41.3
Q ss_pred CccccEEEccCCCCC-----hHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCC-chhHH
Q psy16241 26 LYWPDLVTGDFDSVS-----SNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNG-RLDHC 94 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~-----~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg-R~DH~ 94 (186)
+.+.=++|+| .|+. +.+.+.+++.|+.+..+ |+....+.+.+++.+.+ .+++-|+-+| || -+|=.
T Consensus 29 g~~~~lvvtd-~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiG--GGS~iD~a 103 (382)
T PRK10624 29 GFKKALIVTD-KTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKA-SGADYLIAIG--GGSPQDTC 103 (382)
T ss_pred CCCEEEEEeC-cchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeC--ChHHHHHH
Confidence 3445577777 3433 34556677778766654 35666778889998887 6888655444 44 56754
No 105
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=33.73 E-value=83 Score=26.23 Aligned_cols=47 Identities=17% Similarity=-0.012 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241 42 NSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNG 89 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg 89 (186)
+..+.+++++.++..++.+...|.+..+..+.+ .+++-|+++|+-|-
T Consensus 23 ~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~d~ivv~GGDGT 69 (293)
T TIGR00147 23 EVIMLLREEGMEIHVRVTWEKGDAARYVEEARK-FGVDTVIAGGGDGT 69 (293)
T ss_pred HHHHHHHHCCCEEEEEEecCcccHHHHHHHHHh-cCCCEEEEECCCCh
Confidence 445667777877655443333333333444443 46777777777664
No 106
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=32.88 E-value=1.9e+02 Score=23.01 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=30.8
Q ss_pred hHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEc
Q psy16241 41 SNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVE 86 (186)
Q Consensus 41 ~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~ 86 (186)
++.++.+++.|+.++...+ ..-|+..+++.+.+ .|..+|.|.|+
T Consensus 106 ~~~~~~l~~~~~~v~~~~~-~~~dl~~~l~~L~~-~g~~~vlveGG 149 (217)
T PRK05625 106 SEKVEELEKKGAEVIVAGG-ERVDLPDLLEDLYE-RGIKRLMVEGG 149 (217)
T ss_pred HHHHHHHHHCCCEEEEeCC-CCcCHHHHHHHHHH-CCCCEEEEecC
Confidence 3444566777777764432 35788889998877 78888887764
No 107
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=32.63 E-value=98 Score=24.61 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=37.8
Q ss_pred EEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241 31 LVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNG 89 (186)
Q Consensus 31 ~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg 89 (186)
++|=..||.+-+..++++++|.++...+. |..+.+ .+.. ..++-|++.|+-|.
T Consensus 3 l~idn~dsft~nl~~~l~~~g~~v~v~~~-~~~~~~----~~~~-~~~d~iIlsgGP~~ 55 (195)
T PRK07649 3 LMIDNYDSFTFNLVQFLGELGQELVVKRN-DEVTIS----DIEN-MKPDFLMISPGPCS 55 (195)
T ss_pred EEEeCCCccHHHHHHHHHHCCCcEEEEeC-CCCCHH----HHhh-CCCCEEEECCCCCC
Confidence 56777899999999999999988877652 112222 2222 46788898888886
No 108
>PRK10437 carbonic anhydrase; Provisional
Probab=32.27 E-value=73 Score=26.26 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=37.8
Q ss_pred Cccc-cEEEccCCC-CChHHHHHHHhcC-CceeeCC-C---CCccHHHHHHHHHHhhcCCCEEEEEEcC
Q psy16241 26 LYWP-DLVTGDFDS-VSSNSMGRFLALG-SDIVPTP-D---QSYTDFQKAVMEITKREKIDYLISIVEF 87 (186)
Q Consensus 26 ~~~P-d~iiGDfDS-i~~~~~~~~~~~g-~~i~~~p-d---kD~TD~e~Al~~~~~~~~~~~i~v~G~~ 87 (186)
+-.| -++||-.|| +.++..-- ...| +.+++-. . .++.+.--+|+++....+.++|+|+|=.
T Consensus 32 ~q~p~~~~i~C~DSRv~p~~i~~-~~~Gd~fv~Rn~gn~v~~~~~~~~~~leyAV~~L~v~~IvV~GHt 99 (220)
T PRK10437 32 AQKPRFLWIGCSDSRVPAERLTG-LEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHY 99 (220)
T ss_pred CCCCCEEEEEecccCCCHHHhcC-CCCCcEEEEeecccccCCCCcchHHHHHHHHHHcCCCEEEEeCCC
Confidence 3444 578999999 56554321 1223 3333321 1 1234567888999888899999999644
No 109
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=32.26 E-value=1.3e+02 Score=24.62 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=37.8
Q ss_pred ccEEEccCCCCChHHHHHHHhcCCceeeCCCCCcc---HHHHHHHHHHhhcCCCEEEEEEc
Q psy16241 29 PDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYT---DFQKAVMEITKREKIDYLISIVE 86 (186)
Q Consensus 29 Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~T---D~e~Al~~~~~~~~~~~i~v~G~ 86 (186)
+..++=| .-+.-.+++-++.|++...+.-|++. +++.+|...+...+++-|++-|.
T Consensus 30 i~~Visd--~~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAGy 88 (200)
T COG0299 30 IVAVISD--KADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGY 88 (200)
T ss_pred EEEEEeC--CCCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcch
Confidence 4444433 34557788999999988766555554 38888887777677777776664
No 110
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.83 E-value=99 Score=21.49 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=46.2
Q ss_pred EEEccCCCCChHHHHHHHhcCCceeeC-CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHHHHHH-HHH-HhcCCC
Q psy16241 31 LVTGDFDSVSSNSMGRFLALGSDIVPT-PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNI-NTL-YKSSLP 107 (186)
Q Consensus 31 ~iiGDfDSi~~~~~~~~~~~g~~i~~~-pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~l~ni-~~l-~~~~~~ 107 (186)
+|||..+.......+.+++.|...+.+ ++...+.-+.-+.... ..++-|+++= +...|.+.+. --. -+..++
T Consensus 3 liVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t---~~vsH~~~~~vk~~akk~~ip 77 (97)
T PF10087_consen 3 LIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFT---DYVSHNAMWKVKKAAKKYGIP 77 (97)
T ss_pred EEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEe---CCcChHHHHHHHHHHHHcCCc
Confidence 689999998888889999999888777 2223333333355444 2466666553 3466876552 222 232366
Q ss_pred EEEEc
Q psy16241 108 IYLLS 112 (186)
Q Consensus 108 i~l~~ 112 (186)
+++..
T Consensus 78 ~~~~~ 82 (97)
T PF10087_consen 78 IIYSR 82 (97)
T ss_pred EEEEC
Confidence 66543
No 111
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=31.43 E-value=1.5e+02 Score=22.86 Aligned_cols=58 Identities=14% Similarity=0.310 Sum_probs=34.3
Q ss_pred ccEEEccCCCCChHHHHH-HHhcCCceeeCCCCC-------ccHHH--HHHHHHHhhcCCCEEE-EEEc
Q psy16241 29 PDLVTGDFDSVSSNSMGR-FLALGSDIVPTPDQS-------YTDFQ--KAVMEITKREKIDYLI-SIVE 86 (186)
Q Consensus 29 Pd~iiGDfDSi~~~~~~~-~~~~g~~i~~~pdkD-------~TD~e--~Al~~~~~~~~~~~i~-v~G~ 86 (186)
--+||||-|-+...+++. ++..|.+++...-.. ..|+| +-++.+.+++|...++ ++|+
T Consensus 8 kviiiGdRDGiPgpAie~c~k~~gaevvfs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGa 76 (154)
T PRK13265 8 KVIIIGDRDGIPGPAIEECVKTTGAEVVFSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGA 76 (154)
T ss_pred EEEEEecCCCCCcHHHHHHHhccCceEEEEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEecc
Confidence 347899999999888854 555677765432222 24543 3444444446666544 3444
No 112
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=31.37 E-value=1.2e+02 Score=25.29 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=28.6
Q ss_pred ceee-CCCCCccHHHHHHHHHHhhcCCCEEEEEEcC-CCchhHHHHHHHHHHhcCCCEEE
Q psy16241 53 DIVP-TPDQSYTDFQKAVMEITKREKIDYLISIVEF-NGRLDHCMSNINTLYKSSLPIYL 110 (186)
Q Consensus 53 ~i~~-~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~-GgR~DH~l~ni~~l~~~~~~i~l 110 (186)
.+.+ .|+|..+ +.+++.+.+ .|.+-|+|=|-. +-.+|.++.-+.-. +..++++
T Consensus 10 h~~liDPdK~~~--~~~~~~~~~-~gtDai~VGGS~~~~~~d~vv~~ik~~--~~lPvil 64 (230)
T PF01884_consen 10 HATLIDPDKPNP--EEALEAACE-SGTDAIIVGGSDTGVTLDNVVALIKRV--TDLPVIL 64 (230)
T ss_dssp EEEEE-TTSS-H--HHHHHHHHC-TT-SEEEEE-STHCHHHHHHHHHHHHH--SSS-EEE
T ss_pred eEEEECCCCCCc--HHHHHHHHh-cCCCEEEECCCCCccchHHHHHHHHhc--CCCCEEE
Confidence 4444 5887544 577777765 688887755555 44666665544433 2356655
No 113
>PLN03006 carbonate dehydratase
Probab=31.06 E-value=53 Score=28.45 Aligned_cols=62 Identities=21% Similarity=0.169 Sum_probs=40.2
Q ss_pred CCccc-cEEEccCCC-CChHHHHHHHhcC-Cceee------CC-CCCccHHHHHHHHHHhhcCCCEEEEEEcC
Q psy16241 25 ALYWP-DLVTGDFDS-VSSNSMGRFLALG-SDIVP------TP-DQSYTDFQKAVMEITKREKIDYLISIVEF 87 (186)
Q Consensus 25 ~~~~P-d~iiGDfDS-i~~~~~~~~~~~g-~~i~~------~p-dkD~TD~e~Al~~~~~~~~~~~i~v~G~~ 87 (186)
.|-.| -++||=.|| +.++.+-.. ..| +-+++ .| +.....+--+|+||..+.+.+.|+|+|=.
T Consensus 109 ~GQ~P~~lvI~CsDSRV~Pe~Ifd~-~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEYAV~~L~V~~IVV~GHs 180 (301)
T PLN03006 109 DAQAPKFLVIACADSRVCPSAVLGF-QPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVIGHS 180 (301)
T ss_pred cCCCCCEEEEEeccCCCCHHHHhCC-CCCCEEEEeccccccCCccccccchhhhHHHHHHHhCCCEEEEecCC
Confidence 35666 578999999 676654321 123 22222 22 22234477899999998999999999754
No 114
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=30.16 E-value=1.4e+02 Score=24.81 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=23.9
Q ss_pred CccccEEEccCCCCChHHHHHHHhcCCceeeC
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLALGSDIVPT 57 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~ 57 (186)
...||+|++. .+..++..+.+++.|+++..+
T Consensus 89 al~PDlIi~~-~~~~~~~~~~l~~~gi~v~~~ 119 (289)
T TIGR03659 89 SLKPTVVLSV-TTLEEDLGPKFKQLGVEATFL 119 (289)
T ss_pred ccCCcEEEEc-CcccHHHHHHHHHcCCcEEEE
Confidence 4789999985 456677778889888877654
No 115
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=30.03 E-value=70 Score=23.01 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=31.5
Q ss_pred CChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEE
Q psy16241 39 VSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLIS 83 (186)
Q Consensus 39 i~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v 83 (186)
++..+.+.+.++|+ .+.+++..-++.|++.|.+ +|.++-+|
T Consensus 17 fSkHA~~RL~~R~I---~l~~~~~~~i~~av~~A~~-KG~kesLv 57 (96)
T TIGR02530 17 LSKHALERMRERNI---SINPDDWKKLLEAVEEAES-KGVKDSLI 57 (96)
T ss_pred EcHHHHHHHHHcCC---CCCHHHHHHHHHHHHHHHh-cCCCceEE
Confidence 57778888888875 3566788889999999998 78765443
No 116
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=29.47 E-value=2.4e+02 Score=24.77 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=42.4
Q ss_pred CccccEEEccCCCCC-----hHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHH
Q psy16241 26 LYWPDLVTGDFDSVS-----SNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHC 94 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~-----~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~ 94 (186)
|.+.=++|.| -|+. +...+.+++.|+.+..+ |+....+.+.+++.+.+ .+++-|+-+|+ |.-+|=.
T Consensus 28 g~~r~lvvt~-~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IiaiGG-GSviD~a 102 (379)
T TIGR02638 28 GFKKALVVTD-KDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKA-SGADYLIAIGG-GSPIDTA 102 (379)
T ss_pred CCCEEEEEcC-cchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-hHHHHHH
Confidence 4455577777 3333 34456677778766654 35677788889998887 68887665554 2256754
No 117
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=29.36 E-value=4.2e+02 Score=23.80 Aligned_cols=73 Identities=4% Similarity=-0.003 Sum_probs=52.5
Q ss_pred EEccCCCCChHHHHHHHhcCCceeeCCCCCcc--------------HHHHHHHHHHhhcCCCE--E-EEEEcCCCchhHH
Q psy16241 32 VTGDFDSVSSNSMGRFLALGSDIVPTPDQSYT--------------DFQKAVMEITKREKIDY--L-ISIVEFNGRLDHC 94 (186)
Q Consensus 32 iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~T--------------D~e~Al~~~~~~~~~~~--i-~v~G~~GgR~DH~ 94 (186)
+-.+.++++++.++.+++.|+..+.+--|..+ +...|++.+.+ .|++. + +++|..|--.++.
T Consensus 142 ie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~-~G~~~v~~dli~GlPgqt~e~~ 220 (455)
T TIGR00538 142 IEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHARE-AGFTSINIDLIYGLPKQTKESF 220 (455)
T ss_pred EEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHh-cCCCcEEEeEEeeCCCCCHHHH
Confidence 34577888999999999988777665433332 45667777776 68763 3 5678788788888
Q ss_pred HHHHHHHHhcC
Q psy16241 95 MSNINTLYKSS 105 (186)
Q Consensus 95 l~ni~~l~~~~ 105 (186)
...+..+....
T Consensus 221 ~~tl~~~~~l~ 231 (455)
T TIGR00538 221 AKTLEKVAELN 231 (455)
T ss_pred HHHHHHHHhcC
Confidence 88888888776
No 118
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=29.34 E-value=1.3e+02 Score=23.05 Aligned_cols=51 Identities=16% Similarity=0.333 Sum_probs=34.1
Q ss_pred HHHHHHHhcCC-----ceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEc-CCCchhHH
Q psy16241 42 NSMGRFLALGS-----DIVPTPDQSYTDFQKAVMEITKREKIDYLISIVE-FNGRLDHC 94 (186)
Q Consensus 42 ~~~~~~~~~g~-----~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~-~GgR~DH~ 94 (186)
.+++.+++.|+ .++..| -.-++=.|++.+.+...++-|+.+|+ .-|.-+|.
T Consensus 24 ~a~~~l~~~g~~~~~i~~~~VP--Ga~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~ 80 (144)
T PF00885_consen 24 GALEELKRHGVAEENIEVIRVP--GAFELPLAAKRLAESGRYDAVIALGCVIRGETDHF 80 (144)
T ss_dssp HHHHHHHHTTTTGGCEEEEEES--SGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHH
T ss_pred HHHHHHHHcCCCccceEEEEcC--CHHHHHHHHHHHhcccCccEEEEeccccCCCchHH
Confidence 34567777776 334456 34567788888887556999999996 34556664
No 119
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=28.76 E-value=2.3e+02 Score=25.09 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=43.6
Q ss_pred CccccEEEccCCCCC-----hHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHH
Q psy16241 26 LYWPDLVTGDFDSVS-----SNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHC 94 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~-----~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~ 94 (186)
|.+-=+++|| .|+. +.+.+.+++.|+.+..+ |+-.....+.+++.+.+ .+++-|+-+|+ |.-+|-.
T Consensus 48 g~~~~lvv~~-~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~-~~~D~IiavGG-GS~iD~A 122 (395)
T PRK15454 48 GLKHLFVMAD-SFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRE-SGCDGVIAFGG-GSVLDAA 122 (395)
T ss_pred CCCEEEEEcC-cchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCcCEEEEeCC-hHHHHHH
Confidence 4555677887 3332 34567788888877654 24455668889999887 68887776663 3367764
No 120
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=28.62 E-value=1.1e+02 Score=24.18 Aligned_cols=60 Identities=12% Similarity=0.273 Sum_probs=40.8
Q ss_pred ccC-CCCChHHHHHHHhcCCceee---CCCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHH
Q psy16241 34 GDF-DSVSSNSMGRFLALGSDIVP---TPDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCM 95 (186)
Q Consensus 34 GDf-DSi~~~~~~~~~~~g~~i~~---~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l 95 (186)
|+- |--.+...+++++.|..+.. .|| |.--.+.++..+.... ++-|+..|++| ++=|-|-
T Consensus 22 ~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D-~~~~I~~~l~~~~~~~-~DvvlttGGTG~t~RDvTp 86 (169)
T COG0521 22 GEYEDKSGPLLVELLEEAGHNVAAYTIVPD-DKEQIRATLIALIDED-VDVVLTTGGTGITPRDVTP 86 (169)
T ss_pred CCccccchhHHHHHHHHcCCccceEEEeCC-CHHHHHHHHHHHhcCC-CCEEEEcCCccCCCCcCCH
Confidence 444 65567778899998866633 243 4444777777766533 89999999999 5556554
No 121
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=28.50 E-value=31 Score=30.01 Aligned_cols=47 Identities=15% Similarity=-0.007 Sum_probs=21.7
Q ss_pred CccccEEEccCCCCChHHHHHHHhcCC--ceeeCCCCCccHHHHHHHHHHh
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLALGS--DIVPTPDQSYTDFQKAVMEITK 74 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~~g~--~i~~~pdkD~TD~e~Al~~~~~ 74 (186)
+++||- ||+=.+..++++.+.+.|. .-.+.--.++-|++.+++...+
T Consensus 266 gvR~DS--Gd~~~~~~~~~~~l~~~g~~~~~~~ii~sg~l~~~~~i~~~~~ 314 (343)
T cd01567 266 GVRLDS--GDPVELIKKVRKHLDELGIDLNKKKIIISGDLDTEEAIELLLE 314 (343)
T ss_pred EEECCC--CCHHHHHHHHHHHHHHcCCCCCCeEEEEECCCCHHHHHHHHHH
Confidence 455554 5555555555555555554 1111112344455555554443
No 122
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=28.42 E-value=1.3e+02 Score=26.01 Aligned_cols=63 Identities=21% Similarity=0.188 Sum_probs=41.9
Q ss_pred CccccEEEccCCCCC-----hHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhH
Q psy16241 26 LYWPDLVTGDFDSVS-----SNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDH 93 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~-----~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH 93 (186)
| +|=+|.|. ++. +.+...+++.++.+..+ ++-+..+.+.+++.+.+ .+++-|+-+|+. .-+|=
T Consensus 22 g-r~lvVt~~--~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIaiGGG-S~~D~ 93 (366)
T PF00465_consen 22 G-RVLVVTDP--SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARK-FGADCIIAIGGG-SVMDA 93 (366)
T ss_dssp T-EEEEEEEH--HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHH-TTSSEEEEEESH-HHHHH
T ss_pred C-CEEEEECc--hHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHh-cCCCEEEEcCCC-CcCcH
Confidence 5 66666665 433 34445677778777553 46788899999999987 799987766642 24554
No 123
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=28.38 E-value=1.4e+02 Score=23.75 Aligned_cols=30 Identities=27% Similarity=0.096 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCceeeCC--CCCccHHHHHHHH
Q psy16241 42 NSMGRFLALGSDIVPTP--DQSYTDFQKAVME 71 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~p--dkD~TD~e~Al~~ 71 (186)
...+.++++|+...++| |..-.|++.+.+.
T Consensus 91 ~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i 122 (168)
T PF05706_consen 91 DLGEAAQARGIAWHHLPIPDGSAPDFAAAWQI 122 (168)
T ss_dssp THHHHHHHTT-EEEE----TTS---HHHHHHH
T ss_pred cHHHHHHHcCCEEEecCccCCCCCCHHHHHHH
Confidence 44578889999998887 6666777665543
No 124
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=28.21 E-value=1.8e+02 Score=23.04 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=24.0
Q ss_pred CccccEEEccCCCCChHHHHHHHhcCCceeeCC
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP 58 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p 58 (186)
...||+|+..-...+....+.+++.|++++.++
T Consensus 56 ~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~ 88 (235)
T cd01149 56 SLKPTLVIASDEAGPPEALDQLRAAGVPVVTVP 88 (235)
T ss_pred ccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEec
Confidence 478999998544444567788888888887654
No 125
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=27.95 E-value=45 Score=26.39 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=9.2
Q ss_pred CccccEEEcc
Q psy16241 26 LYWPDLVTGD 35 (186)
Q Consensus 26 ~~~Pd~iiGD 35 (186)
|+.||+|||=
T Consensus 64 Gf~PDvI~~H 73 (171)
T PF12000_consen 64 GFVPDVIIAH 73 (171)
T ss_pred CCCCCEEEEc
Confidence 8999999984
No 126
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=27.92 E-value=33 Score=30.87 Aligned_cols=59 Identities=15% Similarity=-0.091 Sum_probs=38.3
Q ss_pred CCCccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEc
Q psy16241 24 PALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVE 86 (186)
Q Consensus 24 ~~~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~ 86 (186)
..|++||- ||+-.+.+++++++.++|....+.---|.-+-|.+++.... .|.. +..+|.
T Consensus 264 ~~GVR~DS--Gd~~~~~~kvr~~ld~~G~~~~~Ii~Sdg~lde~~i~~l~~-~g~~-~d~FGv 322 (405)
T COG1488 264 LDGVRLDS--GDPRELSEKVRAHLDKLGYDPVKIIVSDGLLDEKIIALLRA-FGAR-NDAFGV 322 (405)
T ss_pred ceEEECCC--CCHHHHHHHHHHHHHHcCCCceEEEEeCCcchHHHHHHHHH-hCCC-ccEecc
Confidence 34677777 88888888888888888765544322245566677776665 4555 565654
No 127
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=27.17 E-value=1.3e+02 Score=25.33 Aligned_cols=46 Identities=7% Similarity=-0.063 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241 42 NSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKIDYLISIVEFNG 89 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg 89 (186)
+.++.+++.|..+..+. .+.....++|-+.+. .+++.|++.|+-|-
T Consensus 18 ~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~--~~~d~vv~~GGDGT 64 (293)
T TIGR03702 18 EAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALA--LGVSTVIAGGGDGT 64 (293)
T ss_pred HHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHH--cCCCEEEEEcCChH
Confidence 34456777887765444 333334455555443 46777777777663
No 128
>PRK13337 putative lipid kinase; Reviewed
Probab=27.05 E-value=1.3e+02 Score=25.46 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241 42 NSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNG 89 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg 89 (186)
+..+.+++.+.++..+.-+..-|.+...+.+.+ .+.+.|++.|+-|-
T Consensus 23 ~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~-~~~d~vvv~GGDGT 69 (304)
T PRK13337 23 DVLQKLEQAGYETSAHATTGPGDATLAAERAVE-RKFDLVIAAGGDGT 69 (304)
T ss_pred HHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHh-cCCCEEEEEcCCCH
Confidence 445567777776654432234455555554544 57777777777664
No 129
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=26.72 E-value=1.6e+02 Score=21.34 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=22.4
Q ss_pred HHHHhcCCceeeCC-C--CCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhH
Q psy16241 45 GRFLALGSDIVPTP-D--QSYTDFQKAVMEITKREKIDYLISIVEFNGRLDH 93 (186)
Q Consensus 45 ~~~~~~g~~i~~~p-d--kD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH 93 (186)
+..++.|..+++.| . +-.-+.-.++..+.+ .-...|++++.+|.|-=+
T Consensus 51 ~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~-~~~~Pvl~hC~sG~Ra~~ 101 (110)
T PF04273_consen 51 AAAEALGLQYVHIPVDGGAITEEDVEAFADALE-SLPKPVLAHCRSGTRASA 101 (110)
T ss_dssp HHHHHCT-EEEE----TTT--HHHHHHHHHHHH-TTTTSEEEE-SCSHHHHH
T ss_pred HHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH-hCCCCEEEECCCChhHHH
Confidence 45666777777766 2 111112222233333 234578888888888743
No 130
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=26.34 E-value=3.2e+02 Score=24.38 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=41.0
Q ss_pred CccccEEEccCCCCC----hHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhH
Q psy16241 26 LYWPDLVTGDFDSVS----SNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDH 93 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~----~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH 93 (186)
+.+.=++|.|=.... +...+.+++.|+.+..+ |+-.....+.+++.+.+ .+++-|+-+|+ |.-+|=
T Consensus 22 g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GSviD~ 95 (414)
T cd08190 22 GARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKK-GQFDAFVAVGG-GSVIDT 95 (414)
T ss_pred CCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-ccHHHH
Confidence 445556777733222 33455677778777654 35566678888888887 68887665553 225665
No 131
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.32 E-value=1.7e+02 Score=24.97 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEcCCCchh
Q psy16241 64 DFQKAVMEITKREKIDYLISIVEFNGRLD 92 (186)
Q Consensus 64 D~e~Al~~~~~~~~~~~i~v~G~~GgR~D 92 (186)
++-+++++... .++++|++.|+.-.|.+
T Consensus 56 ~vg~lik~l~~-~~v~~vVl~G~v~~Rp~ 83 (279)
T COG3494 56 EVGKLIKLLKT-EGVDRVVLAGGVERRPN 83 (279)
T ss_pred HHHHHHHHHHH-cCCcEEEEecccccCcc
Confidence 46677888877 69999999999987654
No 132
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=25.46 E-value=79 Score=27.34 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=44.5
Q ss_pred EEEchhHHHHHHhhhcCCCCCCCccccEEEccCCCCChHHHHHHH----hcCCceeeCC-CCCccHHHHHHHHHHhhcCC
Q psy16241 4 CTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFL----ALGSDIVPTP-DQSYTDFQKAVMEITKREKI 78 (186)
Q Consensus 4 IaaDgGa~~l~~~~~~~~~~~~~~~Pd~iiGDfDSi~~~~~~~~~----~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~ 78 (186)
+.-+|..+.+-++... .+ .--++|.|=.+. +...+.++ +.++.+..+. .++..+.+.+++.+.+ .++
T Consensus 6 ~~G~g~l~~l~~~~~~-----~~-~~~liv~d~~~~-~~~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~ 77 (347)
T cd08172 6 ISGEGALDELGELLKR-----FG-KRPLIVTGPRSW-AAAKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKE-NGA 77 (347)
T ss_pred EeCcCHHHHHHHHHHH-----hC-CeEEEEECHHHH-HHHHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHh-cCC
Confidence 3344556666554321 02 334666663332 23333333 3455555565 5788889999999887 688
Q ss_pred CEEEEEEcCCC-chhH
Q psy16241 79 DYLISIVEFNG-RLDH 93 (186)
Q Consensus 79 ~~i~v~G~~Gg-R~DH 93 (186)
+-|+-+| || -+|=
T Consensus 78 D~iIavG--GGs~~D~ 91 (347)
T cd08172 78 DVIIGIG--GGKVLDT 91 (347)
T ss_pred CEEEEeC--CcHHHHH
Confidence 8655444 44 4553
No 133
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=25.44 E-value=1.9e+02 Score=25.22 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=24.4
Q ss_pred CccccEEEccCCCCChHHHHHHHhcCCceeeCC
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP 58 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p 58 (186)
.+.||+|++...+ ..+..+.+++.|++++.++
T Consensus 117 ~l~PDLVi~~~~~-~~~~~~~L~~~gi~V~~~~ 148 (359)
T PRK09534 117 GLDPDLVLAPNAV-AGDTVTRLREAGITVFHFP 148 (359)
T ss_pred cCCCCEEEEcCCC-chHHHHHHHHCCCeEEEeC
Confidence 4789999986443 4456788999999887764
No 134
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.43 E-value=1.6e+02 Score=23.56 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=26.0
Q ss_pred CccccEEEccCCCCChHHHHHHHh-cCCceeeCCCCC-ccHHHHHHHHH
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLA-LGSDIVPTPDQS-YTDFQKAVMEI 72 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~-~g~~i~~~pdkD-~TD~e~Al~~~ 72 (186)
...||+|++....-.....+.+++ .|++++.++..+ ..|....++.+
T Consensus 72 ~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~l 120 (262)
T cd01147 72 ALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLL 120 (262)
T ss_pred hcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHH
Confidence 478999998633222234555655 678887764322 33444444433
No 135
>PF05735 TSP_C: Thrombospondin C-terminal region; InterPro: IPR008859 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu. They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. The globular C-terminal domain is a beta sandwich of two curved antiparallel beta-sheets []. The fold is an elaboration of the jelly role topology, with strand B3-B7, B11 and B14-B15 forming the eight-stranded jelly roll motif. The function of the C-terminal domain is not yet known.; GO: 0005509 calcium ion binding, 0007155 cell adhesion, 0005576 extracellular region; PDB: 1UX6_A 1YO8_A 2RHP_A 3FBY_C.
Probab=25.29 E-value=1.8e+02 Score=23.71 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=31.6
Q ss_pred CCEEEEcCCeEEEEEecCCCeEEEEeCCCCCCCCCEEEEEecCCceeeeEEecceEecCCc
Q psy16241 106 LPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNH 166 (186)
Q Consensus 106 ~~i~l~~~~~~i~~l~~~~g~~~i~~~~~~~~~~~~~Sl~pl~~~~~~vt~~Glky~L~~~ 166 (186)
+++++.....++. . .|.. ++..+ .|-.++++.++. +.|.-++|+|..++.
T Consensus 150 irv~~~~g~~l~~--D--sG~v---~D~T~--~gGrlG~y~fSQ--e~Vi~S~l~y~C~~~ 199 (201)
T PF05735_consen 150 IRVRVYEGKQLVA--D--SGNV---YDSTF--KGGRLGVYCFSQ--ENVIWSNLKYKCNDT 199 (201)
T ss_dssp EEEEEEETTEEEE--E---TTE---E--SS--SSEEEEEEEES---SSEEEEEEEEEES-S
T ss_pred EEEEEEeCCEEEE--e--cccE---eeccc--cCCcEEEEEecc--ccEEEEccEEEecCc
Confidence 4555655555532 2 3431 23445 789999999998 579999999998753
No 136
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=25.14 E-value=1.9e+02 Score=25.26 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=40.6
Q ss_pred ccEEEccCCCC-----ChHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHH
Q psy16241 29 PDLVTGDFDSV-----SSNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHC 94 (186)
Q Consensus 29 Pd~iiGDfDSi-----~~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~ 94 (186)
--++|.|=.|. -+.+.+.+++.|+.+..+ |+-...+.+.+++.+.+ .+++-|+-+|+ |.-+|=.
T Consensus 27 r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IiavGG-GS~iD~a 99 (380)
T cd08185 27 KALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALARE-EGCDFVVGLGG-GSSMDTA 99 (380)
T ss_pred eEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHH-cCCCEEEEeCC-ccHHHHH
Confidence 34556654332 144556677778777654 35677778899998887 68887665553 2357764
No 137
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=24.83 E-value=1.7e+02 Score=25.60 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=34.6
Q ss_pred hHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCC-chhHH
Q psy16241 41 SNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNG-RLDHC 94 (186)
Q Consensus 41 ~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg-R~DH~ 94 (186)
+.+.+.+++.++.+..+ |+....+.+.+++.+.+ .+++-|+-+| || -+|=.
T Consensus 44 ~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiG--GGs~iD~a 99 (376)
T cd08193 44 DPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARA-AGADGVIGFG--GGSSMDVA 99 (376)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeC--CchHHHHH
Confidence 34456677777766543 46778889999999887 6888665555 44 56653
No 138
>PRK06267 hypothetical protein; Provisional
Probab=24.82 E-value=4.6e+02 Score=22.76 Aligned_cols=62 Identities=10% Similarity=0.175 Sum_probs=43.2
Q ss_pred EccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCC--EEEEEEcCCCchhHHHHHHHHHHhcC
Q psy16241 33 TGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKID--YLISIVEFNGRLDHCMSNINTLYKSS 105 (186)
Q Consensus 33 iGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~--~i~v~G~~GgR~DH~l~ni~~l~~~~ 105 (186)
.|.+++.+++....+. |.+..-|...+++.+.+ .|.. .-+++| +|...+|....+..+.+..
T Consensus 132 ~g~~ET~~~~~~~~i~---------~~~s~ed~~~~l~~ak~-aGi~v~~g~IiG-lgEt~ed~~~~l~~l~~l~ 195 (350)
T PRK06267 132 VGAVETVNPKLHREIC---------PGKPLDKIKEMLLKAKD-LGLKTGITIILG-LGETEDDIEKLLNLIEELD 195 (350)
T ss_pred eeeeecCCHHHHHhhC---------CCCCHHHHHHHHHHHHH-cCCeeeeeEEEe-CCCCHHHHHHHHHHHHHcC
Confidence 4666777666544322 23567788899998887 6876 446777 6888888888788777775
No 139
>PLN03019 carbonic anhydrase
Probab=24.39 E-value=85 Score=27.58 Aligned_cols=62 Identities=19% Similarity=0.153 Sum_probs=38.4
Q ss_pred CCccc-cEEEccCCC-CChHHHHHHHhcC-Cceee-----CCCCC---ccHHHHHHHHHHhhcCCCEEEEEEcC
Q psy16241 25 ALYWP-DLVTGDFDS-VSSNSMGRFLALG-SDIVP-----TPDQS---YTDFQKAVMEITKREKIDYLISIVEF 87 (186)
Q Consensus 25 ~~~~P-d~iiGDfDS-i~~~~~~~~~~~g-~~i~~-----~pdkD---~TD~e~Al~~~~~~~~~~~i~v~G~~ 87 (186)
.+-.| -++||-.|| +.++.+-. ...| +-+++ .|..| +..+--+|+|+..+.+.+.|+|+|=.
T Consensus 151 ~gQ~P~alvI~CsDSRV~Pe~Ifd-~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs 223 (330)
T PLN03019 151 KGQSPKYMVFACSDSRVCPSHVLD-FHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHS 223 (330)
T ss_pred cCCCCCEEEEEecccCCCHHHHhC-CCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCC
Confidence 45666 578999999 67665421 1123 22222 12212 12455789999888899999999744
No 140
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=24.18 E-value=2.7e+02 Score=26.79 Aligned_cols=61 Identities=11% Similarity=0.266 Sum_probs=42.1
Q ss_pred ChHHHHHHHh----c-CCceee---CCCCCccHHHHHHHHHHhhcCCCEEEEEEcCC-CchhHHHHHHHHH
Q psy16241 40 SSNSMGRFLA----L-GSDIVP---TPDQSYTDFQKAVMEITKREKIDYLISIVEFN-GRLDHCMSNINTL 101 (186)
Q Consensus 40 ~~~~~~~~~~----~-g~~i~~---~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~G-gR~DH~l~ni~~l 101 (186)
.+...+.+++ . |..+.. .|| |..++..+|..+....+++-|++.|+.| |.-|++-..+.-+
T Consensus 480 g~~~~~il~~n~~~l~G~~v~~~~iv~D-d~~~I~~~l~~~~~~~~~DlVItTGGts~g~~D~tpeal~~l 549 (659)
T PLN02699 480 GPRAVSVVNSSSEKLGGAKVVATAVVPD-DVEKIKDVLQKWSDIDRMDLILTLGGTGFTPRDVTPEATKEV 549 (659)
T ss_pred chHHHHHHHhhhhhcCCcEEEEEEEcCC-CHHHHHHHHHHHHhcCCCCEEEECCCccCCCCcchHHHHHHH
Confidence 3454556654 2 655544 354 6678899998875324789999999988 7999987666555
No 141
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=24.05 E-value=2.4e+02 Score=22.24 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=26.6
Q ss_pred HHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEc
Q psy16241 45 GRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVE 86 (186)
Q Consensus 45 ~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~ 86 (186)
+.+.+.|+.++...+ ..-|+..+++.+.+ .|...|+|.|+
T Consensus 111 ~~~~~~g~~~i~~~~-~~~dl~~~l~~L~~-~g~~~llveGG 150 (216)
T TIGR00227 111 KELEDFGVEVLVLET-KRVDLKKLMEILYE-EGINSVMVEGG 150 (216)
T ss_pred HHHHHCCcEEEECCC-CCcCHHHHHHHHHH-cCCCEEEEeeC
Confidence 345555666654433 23478889998877 69999888653
No 142
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=24.01 E-value=5.3e+02 Score=23.17 Aligned_cols=72 Identities=7% Similarity=-0.032 Sum_probs=53.0
Q ss_pred EccCCCCChHHHHHHHhcCCceeeCCCCCcc--------------HHHHHHHHHHhhcCCCEE---EEEEcCCCchhHHH
Q psy16241 33 TGDFDSVSSNSMGRFLALGSDIVPTPDQSYT--------------DFQKAVMEITKREKIDYL---ISIVEFNGRLDHCM 95 (186)
Q Consensus 33 iGDfDSi~~~~~~~~~~~g~~i~~~pdkD~T--------------D~e~Al~~~~~~~~~~~i---~v~G~~GgR~DH~l 95 (186)
-.+-++++++.++.+++.|+..+.+.-|... +...|++.+.+ .|++.| +++|-.|--.++..
T Consensus 143 e~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~-~G~~~v~~dli~GlPgqt~e~~~ 221 (453)
T PRK09249 143 EIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARE-LGFTSINIDLIYGLPKQTPESFA 221 (453)
T ss_pred EecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHH-cCCCcEEEEEEccCCCCCHHHHH
Confidence 3577889999999999988877665433332 56667777776 577544 66788888888888
Q ss_pred HHHHHHHhcC
Q psy16241 96 SNINTLYKSS 105 (186)
Q Consensus 96 ~ni~~l~~~~ 105 (186)
..+..+....
T Consensus 222 ~~l~~~~~l~ 231 (453)
T PRK09249 222 RTLEKVLELR 231 (453)
T ss_pred HHHHHHHhcC
Confidence 8888888776
No 143
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=23.58 E-value=4.8e+02 Score=22.53 Aligned_cols=71 Identities=10% Similarity=0.010 Sum_probs=52.8
Q ss_pred ccCCCCChHHHHHHHhcCCceeeCCCCC--------------ccHHHHHHHHHHhhcCCCEEE---EEEcCCCchhHHHH
Q psy16241 34 GDFDSVSSNSMGRFLALGSDIVPTPDQS--------------YTDFQKAVMEITKREKIDYLI---SIVEFNGRLDHCMS 96 (186)
Q Consensus 34 GDfDSi~~~~~~~~~~~g~~i~~~pdkD--------------~TD~e~Al~~~~~~~~~~~i~---v~G~~GgR~DH~l~ 96 (186)
.+-++++++.++.+++.|+..+.+--|. .-+...|++.+.+ .|++.|. ++|-.|--.+....
T Consensus 93 ~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~-~G~~~v~~dli~GlPgqt~~~~~~ 171 (360)
T TIGR00539 93 ANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALK-SGIENISLDLMYGLPLQTLNSLKE 171 (360)
T ss_pred eCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHH-cCCCeEEEeccCCCCCCCHHHHHH
Confidence 5778899999999998887766543332 2356678888877 6887553 57777888898888
Q ss_pred HHHHHHhcC
Q psy16241 97 NINTLYKSS 105 (186)
Q Consensus 97 ni~~l~~~~ 105 (186)
.+..+....
T Consensus 172 ~l~~~~~l~ 180 (360)
T TIGR00539 172 ELKLAKELP 180 (360)
T ss_pred HHHHHHccC
Confidence 888888776
No 144
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=23.42 E-value=1.4e+02 Score=23.58 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=26.2
Q ss_pred CCCCCccH--HHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241 57 TPDQSYTD--FQKAVMEITKREKIDYLISIVEFNG 89 (186)
Q Consensus 57 ~pdkD~TD--~e~Al~~~~~~~~~~~i~v~G~~Gg 89 (186)
.|-|.-|| +++|++.|.+ .|.++++|-...|-
T Consensus 6 ~pG~eNT~~tle~a~erA~e-lgik~~vVAS~tG~ 39 (186)
T COG1751 6 KPGKENTDETLEIAVERAKE-LGIKHIVVASSTGY 39 (186)
T ss_pred CCcccchHHHHHHHHHHHHh-cCcceEEEEecccH
Confidence 46556666 8899999998 89999999888885
No 145
>PRK13054 lipid kinase; Reviewed
Probab=23.37 E-value=1.7e+02 Score=24.64 Aligned_cols=46 Identities=13% Similarity=-0.018 Sum_probs=24.3
Q ss_pred HHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241 43 SMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNG 89 (186)
Q Consensus 43 ~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg 89 (186)
.++.+++.+.++.....+..-|.+...+.+.+ .+++-|++.|+-|-
T Consensus 23 ~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~-~~~d~vvv~GGDGT 68 (300)
T PRK13054 23 AVGLLREEGHTLHVRVTWEKGDAARYVEEALA-LGVATVIAGGGDGT 68 (300)
T ss_pred HHHHHHHcCCEEEEEEecCCCcHHHHHHHHHH-cCCCEEEEECCccH
Confidence 34557777776554432222333333333333 46777777776663
No 146
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=23.37 E-value=2.9e+02 Score=23.94 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=40.6
Q ss_pred cccEEEccCCCC-ChHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCC-chhH
Q psy16241 28 WPDLVTGDFDSV-SSNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNG-RLDH 93 (186)
Q Consensus 28 ~Pd~iiGDfDSi-~~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg-R~DH 93 (186)
.-=++|.|=.+. .+...+.+++.++.+..+ |+......+.+++.+.+ .+++-|+-+| || -+|=
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavG--GGs~~D~ 92 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLRE-FGPDAVLAVG--GGSVLDT 92 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHh-cCcCEEEEeC--CcHHHHH
Confidence 334667665543 344556677777666553 35667788899998887 6888665444 44 5665
No 147
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.30 E-value=1.4e+02 Score=19.98 Aligned_cols=21 Identities=14% Similarity=0.001 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhcCCCEEEEEE
Q psy16241 64 DFQKAVMEITKREKIDYLISIV 85 (186)
Q Consensus 64 D~e~Al~~~~~~~~~~~i~v~G 85 (186)
.+.+-+++|.. .|++-++++|
T Consensus 42 ~l~k~i~~a~~-~g~~~~iiiG 62 (94)
T cd00861 42 RPGVKFADADL-IGIPYRIVVG 62 (94)
T ss_pred CcccchhHHHh-cCCCEEEEEC
Confidence 34444444443 4555555554
No 148
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=23.01 E-value=4.2e+02 Score=23.10 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=41.3
Q ss_pred cEEEccCCCCC-----hHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHH
Q psy16241 30 DLVTGDFDSVS-----SNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHC 94 (186)
Q Consensus 30 d~iiGDfDSi~-----~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~ 94 (186)
=++|.|=-|+. +.+.+.+++.|+.+..+ |+......+.+++.+.+ .+++-|+-+|+. .=+|=.
T Consensus 26 ~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIavGGG-SviD~A 97 (375)
T cd08179 26 AFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE-FEPDWIIALGGG-SPIDAA 97 (375)
T ss_pred EEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCCc-cHHHHH
Confidence 35666543333 56667788778777654 35666778899998887 688876666543 246754
No 149
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=22.84 E-value=1.5e+02 Score=24.33 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=34.3
Q ss_pred HHHhcCCceee--CCCCCcc-HHHHHHHHHHhhcCCCEEEEEEcCCCchhHHHHHHHHHHhcCCCEEEEcCCe
Q psy16241 46 RFLALGSDIVP--TPDQSYT-DFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKY 115 (186)
Q Consensus 46 ~~~~~g~~i~~--~pdkD~T-D~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~~~i~l~~~~~ 115 (186)
.++++|..|.. +.+.+.+ +++.+|....++.++.+|.++=..-=|+.+.|.++.. ...+++.++....
T Consensus 57 ~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~~~l~~~~~--~~~i~~~~~~~~~ 127 (224)
T PF04244_consen 57 ELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLEQRLESLAQ--QLGIPLEVLEDPH 127 (224)
T ss_dssp HHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHHHHHHH------SSS-EEEE--TT
T ss_pred HHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHhhhc--ccCCceEEeCCCC
Confidence 45667877765 4444444 8899997777667899988887777789888877442 3335566655444
No 150
>PRK03202 6-phosphofructokinase; Provisional
Probab=22.69 E-value=4.4e+02 Score=22.87 Aligned_cols=61 Identities=18% Similarity=0.149 Sum_probs=39.6
Q ss_pred CChHHHHHHHhcCCceee---C-CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHHHHHHHHHHhcC
Q psy16241 39 VSSNSMGRFLALGSDIVP---T-PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSS 105 (186)
Q Consensus 39 i~~~~~~~~~~~g~~i~~---~-pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~ 105 (186)
++.+.++.+...|=.++. + |.++..+.+++++.+.+ ++.+.++++|+.|. +.....|..+.
T Consensus 52 l~~~~v~~~~~~gGs~LgtsR~~~~~~~~~~~~~~~~l~~-~~Id~Li~IGGd~s-----~~~a~~L~e~~ 116 (320)
T PRK03202 52 LDLKSVSDIINRGGTILGSARFPEFKDEEGRAKAIENLKK-LGIDALVVIGGDGS-----YMGAKRLTEHG 116 (320)
T ss_pred CCHHHHhhHHhCCCcccccCCCCCcCCHHHHHHHHHHHHH-cCCCEEEEeCChHH-----HHHHHHHHhcC
Confidence 455666555555422332 2 33456689999999887 79999999998554 55555555543
No 151
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=22.36 E-value=1.7e+02 Score=24.00 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=25.5
Q ss_pred CccccEEEccCCCCC----hHHHHHHHhcCCceeeCCC
Q psy16241 26 LYWPDLVTGDFDSVS----SNSMGRFLALGSDIVPTPD 59 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~----~~~~~~~~~~g~~i~~~pd 59 (186)
.+.||+|+.+..... .+..+.+++.|++++.+++
T Consensus 77 ~l~PDlIi~~~~~~~~~~~~~~~~~L~~~gipv~~~~~ 114 (284)
T cd01148 77 AARPDLVFGGWSYGFDKGGLGTPDSLAELGIKTYILPE 114 (284)
T ss_pred cCCCCEEEEecccccCCCCCCCHHHHHHCCCeEEECch
Confidence 589999999864433 3446888888999988753
No 152
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=22.22 E-value=2.3e+02 Score=22.24 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=36.0
Q ss_pred EEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241 31 LVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNG 89 (186)
Q Consensus 31 ~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg 89 (186)
++|=-.||.+-+..++++++|+.+...+... .|++. + .. ..++-+++.|+-|+
T Consensus 3 l~id~~dsft~~~~~~l~~~g~~~~~~~~~~-~~~~~-~---~~-~~~~~iilsgGp~~ 55 (193)
T PRK08857 3 LMIDNYDSFTYNLYQYFCELGAQVKVVRNDE-IDIDG-I---EA-LNPTHLVISPGPCT 55 (193)
T ss_pred EEEECCCCcHHHHHHHHHHCCCcEEEEECCC-CCHHH-H---hh-CCCCEEEEeCCCCC
Confidence 4566789999999999999998887765321 12221 1 12 34677888887765
No 153
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=22.11 E-value=1.5e+02 Score=27.07 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=42.6
Q ss_pred CCCChHHHHHHHhcCCcee-----------eCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhH
Q psy16241 37 DSVSSNSMGRFLALGSDIV-----------PTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDH 93 (186)
Q Consensus 37 DSi~~~~~~~~~~~g~~i~-----------~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH 93 (186)
--++.++-+++.++|++++ +.|++---|+..-++.-.+++|...++++|-.-| .|-
T Consensus 273 r~lDk~v~~~l~~~gvpVvGvdsLRYfW~~rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGySfG-ADv 339 (456)
T COG3946 273 RDLDKEVAEALQKQGVPVVGVDSLRYFWSERTPEQIAADLSRLIRFYARRWGAKRVLLIGYSFG-ADV 339 (456)
T ss_pred hhhhHHHHHHHHHCCCceeeeehhhhhhccCCHHHHHHHHHHHHHHHHHhhCcceEEEEeeccc-chh
Confidence 3455677777788877664 3467777899999998777799999999998777 443
No 154
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=21.91 E-value=73 Score=24.61 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=39.4
Q ss_pred EccCCCCChHHHHHHHhcCCceee--C---CCCCc----cHHHHHHHHHHhh-----cCCCEEEEEEcCCCchhHHHHHH
Q psy16241 33 TGDFDSVSSNSMGRFLALGSDIVP--T---PDQSY----TDFQKAVMEITKR-----EKIDYLISIVEFNGRLDHCMSNI 98 (186)
Q Consensus 33 iGDfDSi~~~~~~~~~~~g~~i~~--~---pdkD~----TD~e~Al~~~~~~-----~~~~~i~v~G~~GgR~DH~l~ni 98 (186)
.|+-++-..-.....++.|..++. + |+-.+ -|...|++++.++ ...++|+|.|...| +++
T Consensus 11 ~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAG------g~l 84 (211)
T PF07859_consen 11 MGSKESHWPFAARLAAERGFVVVSIDYRLAPEAPFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAG------GHL 84 (211)
T ss_dssp SCGTTTHHHHHHHHHHHHTSEEEEEE---TTTSSTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHH------HHH
T ss_pred cCChHHHHHHHHHHHhhccEEEEEeeccccccccccccccccccceeeeccccccccccccceEEeecccc------cch
Confidence 355555433333444457755442 2 54332 5788899998875 34679999998888 555
Q ss_pred HHHHh
Q psy16241 99 NTLYK 103 (186)
Q Consensus 99 ~~l~~ 103 (186)
++.+-
T Consensus 85 a~~~~ 89 (211)
T PF07859_consen 85 ALSLA 89 (211)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 54443
No 155
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=21.82 E-value=1.3e+02 Score=25.68 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=37.3
Q ss_pred ccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCCEEEEEEcCC
Q psy16241 34 GDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKIDYLISIVEFN 88 (186)
Q Consensus 34 GDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~i~v~G~~G 88 (186)
|+..-..+.+.+.+++.|..+.... .+. -|....++.+.. .+++-|++.|+-|
T Consensus 16 ~~~~~~~~~~~~~l~~~g~~~~~~~t~~~-g~a~~~a~~a~~-~~~D~via~GGDG 69 (301)
T COG1597 16 GKAKKLLREVEELLEEAGHELSVRVTEEA-GDAIEIAREAAV-EGYDTVIAAGGDG 69 (301)
T ss_pred cchhhHHHHHHHHHHhcCCeEEEEEeecC-ccHHHHHHHHHh-cCCCEEEEecCcc
Confidence 4555566777788888887776643 444 666666666665 5899988888766
No 156
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=21.60 E-value=1.7e+02 Score=22.63 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=37.7
Q ss_pred CccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEE
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYL 81 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i 81 (186)
...+.+.+=.|.++-+.....-+-.|+++..++-.+..|.+.+++.+.. .|++-|
T Consensus 75 ~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~-~G~~vi 129 (176)
T PF06506_consen 75 KYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKA-EGVDVI 129 (176)
T ss_dssp CCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHH-TT--EE
T ss_pred hcCCcEEEEecccccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHH-cCCcEE
Confidence 5667887777888776554444445888888886678899999999987 686653
No 157
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=21.57 E-value=6e+02 Score=22.88 Aligned_cols=73 Identities=8% Similarity=0.096 Sum_probs=53.8
Q ss_pred EEccCCCCChHHHHHHHhcCCceeeCCCCCcc--------------HHHHHHHHHHhhcCCCEE---EEEEcCCCchhHH
Q psy16241 32 VTGDFDSVSSNSMGRFLALGSDIVPTPDQSYT--------------DFQKAVMEITKREKIDYL---ISIVEFNGRLDHC 94 (186)
Q Consensus 32 iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~T--------------D~e~Al~~~~~~~~~~~i---~v~G~~GgR~DH~ 94 (186)
+=++.++++++.++.+++.|+..+.+--|.+. +...|++.+.+ .|+..| +++|--|--.+..
T Consensus 154 iE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~-~g~~~v~~DlI~GlPgqT~e~~ 232 (449)
T PRK09058 154 LEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVA-RDRAAVVCDLIFGLPGQTPEIW 232 (449)
T ss_pred EEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHh-CCCCcEEEEEEeeCCCCCHHHH
Confidence 44788999999999999999887776555543 34456666665 464433 4578888889999
Q ss_pred HHHHHHHHhcC
Q psy16241 95 MSNINTLYKSS 105 (186)
Q Consensus 95 l~ni~~l~~~~ 105 (186)
..++..+....
T Consensus 233 ~~~l~~~~~l~ 243 (449)
T PRK09058 233 QQDLAIVRDLG 243 (449)
T ss_pred HHHHHHHHhcC
Confidence 99999888876
No 158
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=21.54 E-value=4.7e+02 Score=21.64 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=38.7
Q ss_pred ceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHHHHHHHHHHhcC
Q psy16241 53 DIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSS 105 (186)
Q Consensus 53 ~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~ 105 (186)
+-+.+-+-++||.+.|.+.=+...++.+|.++=..-=-.+|+|+-+-.+...-
T Consensus 118 p~i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pll 170 (237)
T COG3510 118 PDILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLL 170 (237)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHh
Confidence 44556677999999888754433578888888777667888888887766543
No 159
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.29 E-value=4e+02 Score=23.25 Aligned_cols=66 Identities=11% Similarity=0.141 Sum_probs=41.7
Q ss_pred CccccEEEccCCCCC-----hHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHH
Q psy16241 26 LYWPDLVTGDFDSVS-----SNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHC 94 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~-----~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~ 94 (186)
+.+.=++|+|= ++. +.+.+.+++.|+.+..+ |+......+.+++.+.+ .+++-|+-+|+ |.-+|=.
T Consensus 25 g~~~~lvvt~~-~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~d~IIaiGG-GS~~D~a 99 (374)
T cd08189 25 GVKKVLIVTDK-GLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRE-NGCDAILAVGG-GSVIDCA 99 (374)
T ss_pred CCCeEEEEeCc-chhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCC-ccHHHHH
Confidence 44455677662 222 33445677777766653 36777888999999987 68886655553 2357764
No 160
>PLN03014 carbonic anhydrase
Probab=21.09 E-value=1.1e+02 Score=27.01 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=38.7
Q ss_pred CCccc-cEEEccCCC-CChHHHHHHHhcC-Cceee-----CCCCC---ccHHHHHHHHHHhhcCCCEEEEEEcC
Q psy16241 25 ALYWP-DLVTGDFDS-VSSNSMGRFLALG-SDIVP-----TPDQS---YTDFQKAVMEITKREKIDYLISIVEF 87 (186)
Q Consensus 25 ~~~~P-d~iiGDfDS-i~~~~~~~~~~~g-~~i~~-----~pdkD---~TD~e~Al~~~~~~~~~~~i~v~G~~ 87 (186)
.|-.| -++||-.|| +.++.+-. ...| +.+++ .|..| +.+.--+|+|+..+.+.+.|+|+|=.
T Consensus 156 ~GQ~P~alvI~CsDSRV~Pe~Ifd-~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs 228 (347)
T PLN03014 156 KGQSPKYMVFACSDSRVCPSHVLD-FQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHS 228 (347)
T ss_pred cCCCCCEEEEEeccCCCCHHHHhC-CCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCC
Confidence 35556 578999999 66654321 1123 22333 13222 22466799999988899999999744
No 161
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=21.05 E-value=4.1e+02 Score=20.71 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=35.1
Q ss_pred CccHHHHHHHHHHhhcCCCEEEEE-EcCCCchhHHHHHHHHHHhcCCCEE
Q psy16241 61 SYTDFQKAVMEITKREKIDYLISI-VEFNGRLDHCMSNINTLYKSSLPIY 109 (186)
Q Consensus 61 D~TD~e~Al~~~~~~~~~~~i~v~-G~~GgR~DH~l~ni~~l~~~~~~i~ 109 (186)
+...+..+|+.+.+ .+.+.|++. ...||.++....-+..+..+..+++
T Consensus 14 ~~~~l~~~l~~a~~-~~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvi 62 (187)
T cd07020 14 TADYLERAIDQAEE-GGADALIIELDTPGGLLDSTREIVQAILASPVPVV 62 (187)
T ss_pred HHHHHHHHHHHHHh-CCCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEE
Confidence 34567778888776 467777776 8999999998877777776655554
No 162
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.86 E-value=3.5e+02 Score=22.45 Aligned_cols=61 Identities=10% Similarity=0.106 Sum_probs=36.4
Q ss_pred cccEEEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241 28 WPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKIDYLISIVEFNG 89 (186)
Q Consensus 28 ~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg 89 (186)
.|-+=|+=.|......++++.+.|.+++... .-..-+.+.|++.+.+ .+..+++++=+..+
T Consensus 90 ~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~-~~~~~l~llHC~s~ 151 (241)
T PF03102_consen 90 VPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLRE-AGNEDLVLLHCVSS 151 (241)
T ss_dssp -SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHH-HCT--EEEEEE-SS
T ss_pred CCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHh-cCCCCEEEEecCCC
Confidence 5555566667777778888888888887754 6677888888888865 46667766666654
No 163
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=20.82 E-value=1.6e+02 Score=21.97 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=19.4
Q ss_pred CChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHh
Q psy16241 39 VSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITK 74 (186)
Q Consensus 39 i~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~ 74 (186)
+.+..++.++++|+++...|. ++.+.||+...+
T Consensus 74 iG~~a~~~l~~~GIkv~~~~~---~~V~e~i~~~~~ 106 (121)
T COG1433 74 IGPNAYNALKAAGIKVYVAPG---GTVEEAIKAFLE 106 (121)
T ss_pred cCHHHHHHHHHcCcEEEecCC---CCHHHHHHHHhc
Confidence 445566666666666655544 566666665543
No 164
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=20.79 E-value=5.6e+02 Score=22.19 Aligned_cols=72 Identities=10% Similarity=0.160 Sum_probs=51.8
Q ss_pred EccCCCCChHHHHHHHhcCCceeeCCCCC--------------ccHHHHHHHHHHhhcCCCEE---EEEEcCCCchhHHH
Q psy16241 33 TGDFDSVSSNSMGRFLALGSDIVPTPDQS--------------YTDFQKAVMEITKREKIDYL---ISIVEFNGRLDHCM 95 (186)
Q Consensus 33 iGDfDSi~~~~~~~~~~~g~~i~~~pdkD--------------~TD~e~Al~~~~~~~~~~~i---~v~G~~GgR~DH~l 95 (186)
-.+.++++++.++.+++.|+..+.+.-|. ..|...|++.+.+ .|++.| +++|-.|--.+...
T Consensus 91 e~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~-~g~~~v~~dli~GlPgqt~e~~~ 169 (374)
T PRK05799 91 EGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARK-LGFNNINVDLMFGLPNQTLEDWK 169 (374)
T ss_pred EeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHH-cCCCcEEEEeecCCCCCCHHHHH
Confidence 37888999999999999887655433222 2356667777776 677633 45677777888888
Q ss_pred HHHHHHHhcC
Q psy16241 96 SNINTLYKSS 105 (186)
Q Consensus 96 ~ni~~l~~~~ 105 (186)
..+..+....
T Consensus 170 ~~l~~~~~l~ 179 (374)
T PRK05799 170 ETLEKVVELN 179 (374)
T ss_pred HHHHHHHhcC
Confidence 8888887776
No 165
>PRK13059 putative lipid kinase; Reviewed
Probab=20.73 E-value=2.1e+02 Score=24.06 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCceeeC-CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241 42 NSMGRFLALGSDIVPT-PDQSYTDFQKAVMEITKREKIDYLISIVEFNG 89 (186)
Q Consensus 42 ~~~~~~~~~g~~i~~~-pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg 89 (186)
+.++.+++.|.++..+ ..+. -+.+.|.+.+. .+++.|++.|+-|-
T Consensus 23 ~i~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~--~~~d~vi~~GGDGT 68 (295)
T PRK13059 23 KVIRIHQEKGYLVVPYRISLE-YDLKNAFKDID--ESYKYILIAGGDGT 68 (295)
T ss_pred HHHHHHHHCCcEEEEEEccCc-chHHHHHHHhh--cCCCEEEEECCccH
Confidence 4455677777665432 3211 24566665543 47788888887774
No 166
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=20.70 E-value=2.4e+02 Score=25.26 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=46.8
Q ss_pred CccccEEEccCCC----CChHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhH
Q psy16241 26 LYWPDLVTGDFDS----VSSNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDH 93 (186)
Q Consensus 26 ~~~Pd~iiGDfDS----i~~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH 93 (186)
|++--+||-|=.. +-+.+++.++++++.+..| |+-..+..+++++.+.+ .+++-|+-+|+.. =+|-
T Consensus 28 g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~-~~~D~iIalGGGS-~~D~ 101 (377)
T COG1454 28 GAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVARE-FGPDTIIALGGGS-VIDA 101 (377)
T ss_pred CCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCCcc-HHHH
Confidence 5566677777543 3345556778888665442 67888889999999987 7999988777644 4775
No 167
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=20.38 E-value=3.7e+02 Score=22.14 Aligned_cols=72 Identities=8% Similarity=0.110 Sum_probs=36.0
Q ss_pred CCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHHHHHHHHHHhcCCCEEEEcC
Q psy16241 38 SVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSLPIYLLSA 113 (186)
Q Consensus 38 Si~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~~~i~l~~~ 113 (186)
++.+...+..+++|..++..+ +-|......+++.+.. .+++-|++.+......+.. +..+....+++++++.
T Consensus 15 ~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~-~~vDgIIi~~~~~~~~~~~---l~~~~~~~iPvV~~d~ 87 (302)
T TIGR02634 15 KDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIA-RGVDVLVIIPQNGQVLSNA---VQEAKDEGIKVVAYDR 87 (302)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhHHHHH---HHHHHHCCCeEEEecC
Confidence 334444455666676665543 3233344456666665 5777777665332112221 2333333356666654
No 168
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=20.34 E-value=2.3e+02 Score=21.87 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=33.2
Q ss_pred EEccCCCCChHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCCEEEEEEcCCCc
Q psy16241 32 VTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKIDYLISIVEFNGR 90 (186)
Q Consensus 32 iiGDfDSi~~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR 90 (186)
++=.+|+.+....+++++.|+++...| +++..+. ... ..++-|++.|+-|..
T Consensus 3 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~----~~~---~~~dgvil~gG~~~~ 55 (184)
T cd01743 3 LIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEE----LEL---LNPDAIVISPGPGHP 55 (184)
T ss_pred EEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHH----Hhh---cCCCEEEECCCCCCc
Confidence 444567777777888888888877765 4333221 111 346777777887763
No 169
>PRK10444 UMP phosphatase; Provisional
Probab=20.31 E-value=2.8e+02 Score=22.81 Aligned_cols=58 Identities=17% Similarity=0.071 Sum_probs=41.6
Q ss_pred CccccEEEccCCCCChHHHHHHHhcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEc
Q psy16241 26 LYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVE 86 (186)
Q Consensus 26 ~~~Pd~iiGDfDSi~~~~~~~~~~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~ 86 (186)
|...-++.+.--....+..+++++.|.++ .+++-.|-.+.|..++.+ .+..+++++|.
T Consensus 33 g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~--~~~~i~ts~~~~~~~L~~-~~~~~v~~~g~ 90 (248)
T PRK10444 33 GLPLVLLTNYPSQTGQDLANRFATAGVDV--PDSVFYTSAMATADFLRR-QEGKKAYVIGE 90 (248)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHcCCCC--CHhhEecHHHHHHHHHHh-CCCCEEEEEcC
Confidence 67777777776544556667888888653 256778999999999887 35567888776
No 170
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=20.30 E-value=2.9e+02 Score=18.70 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=24.0
Q ss_pred hHHHHHHHhcCCceeeCC-CCCccHHHHHHHHHHhhcCCCEEEEEE
Q psy16241 41 SNSMGRFLALGSDIVPTP-DQSYTDFQKAVMEITKREKIDYLISIV 85 (186)
Q Consensus 41 ~~~~~~~~~~g~~i~~~p-dkD~TD~e~Al~~~~~~~~~~~i~v~G 85 (186)
..+++.++++|+++.... ++| .+...++.....+..++.|++=|
T Consensus 27 ~~ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi~g 71 (90)
T cd03028 27 RKVVQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQLYVNG 71 (90)
T ss_pred HHHHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEECC
Confidence 356677888887776654 444 44444444432223455665433
No 171
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=20.18 E-value=2.7e+02 Score=24.34 Aligned_cols=52 Identities=13% Similarity=0.364 Sum_probs=36.0
Q ss_pred hHHHHHHHhcCCceeeC----CCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHH
Q psy16241 41 SNSMGRFLALGSDIVPT----PDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHC 94 (186)
Q Consensus 41 ~~~~~~~~~~g~~i~~~----pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~ 94 (186)
+.+.+.+++.|+.+..+ |+....+.+.+++.+.+ .+++-|+-+|+ |.-+|-.
T Consensus 47 ~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGG-GS~iD~a 102 (382)
T cd08187 47 DRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKE-EKVDFILAVGG-GSVIDSA 102 (382)
T ss_pred HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHH-cCCCEEEEeCC-hHHHHHH
Confidence 45566777778776654 35566788899999887 68887666653 2367764
No 172
>PF12982 DUF3866: Protein of unknown function (DUF3866); InterPro: IPR024479 This family of proteins is currently functionally uncharacterised.
Probab=20.17 E-value=4.9e+02 Score=22.84 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=46.3
Q ss_pred cEEEccCCCCChHHHHHHHhcC--CceeeC-CCCCc--cHHHHHHHHHHhhcC-CCEEEEEE-cCCCchhHHHHHHHHHH
Q psy16241 30 DLVTGDFDSVSSNSMGRFLALG--SDIVPT-PDQSY--TDFQKAVMEITKREK-IDYLISIV-EFNGRLDHCMSNINTLY 102 (186)
Q Consensus 30 d~iiGDfDSi~~~~~~~~~~~g--~~i~~~-pdkD~--TD~e~Al~~~~~~~~-~~~i~v~G-~~GgR~DH~l~ni~~l~ 102 (186)
=++|||+.|.=+....-+++.. .++... .|.-. -.|...+..+.+ .| .+..+-+| |+|| |..-.|+++-+
T Consensus 91 PVvV~~LHS~Lp~~~a~~k~~~p~~riaYIMtDggALP~~fS~~v~~Lk~-~g~l~~tIT~GqAFGG--D~EaVni~t~L 167 (320)
T PF12982_consen 91 PVVVAELHSMLPPIAAGLKALRPDARIAYIMTDGGALPLAFSRTVAELKE-KGLLDATITCGQAFGG--DLEAVNIYTAL 167 (320)
T ss_pred EEEEEechhhHHHHHHHHHHhCCCCeEEEEEeCCcCccHHHHHHHHHHHh-CCceeeeEEeccccCC--chhhhhHHHHH
Confidence 4789999998888876555432 334332 23221 346677777766 34 45666677 9999 66668877766
Q ss_pred hcC
Q psy16241 103 KSS 105 (186)
Q Consensus 103 ~~~ 105 (186)
-+.
T Consensus 168 laA 170 (320)
T PF12982_consen 168 LAA 170 (320)
T ss_pred HHH
Confidence 554
No 173
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=20.13 E-value=1.2e+02 Score=27.58 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=18.9
Q ss_pred HHHHHHhhcCCCEEEEEEcCCCchhHH
Q psy16241 68 AVMEITKREKIDYLISIVEFNGRLDHC 94 (186)
Q Consensus 68 Al~~~~~~~~~~~i~v~G~~GgR~DH~ 94 (186)
|+.+-.+ .+++-+++=-++|||+|-|
T Consensus 129 Af~~F~~-~~vD~aIlEVGLGGRlDAT 154 (427)
T COG0285 129 AFLYFAE-AKVDVAILEVGLGGRLDAT 154 (427)
T ss_pred HHHHHHh-CCCCEEEEeccccccccch
Confidence 4444333 5788888889999999863
No 174
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=20.10 E-value=2.6e+02 Score=25.05 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=39.6
Q ss_pred CCChHHHHHHHhc-CCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCCchhHHHHHHHHHHhcC
Q psy16241 38 SVSSNSMGRFLAL-GSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSS 105 (186)
Q Consensus 38 Si~~~~~~~~~~~-g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~GgR~DH~l~ni~~l~~~~ 105 (186)
+++=+.++++.+. +.+++.---.+..|.++|+ + .|++-|+|-+..|..+|...+.+..|....
T Consensus 239 ~~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~----~-~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~ 302 (383)
T cd03332 239 SLTWEDLAFLREWTDLPIVLKGILHPDDARRAV----E-AGVDGVVVSNHGGRQVDGSIAALDALPEIV 302 (383)
T ss_pred CCCHHHHHHHHHhcCCCEEEecCCCHHHHHHHH----H-CCCCEEEEcCCCCcCCCCCcCHHHHHHHHH
Confidence 4555666777764 3444432223444444333 3 599999888777778888888888777653
No 175
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=20.00 E-value=2.1e+02 Score=19.40 Aligned_cols=37 Identities=8% Similarity=-0.079 Sum_probs=22.4
Q ss_pred hcCCceeeCCCCCccHHHHHHHHHHhhcCCCEEEEEEcCCC
Q psy16241 49 ALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNG 89 (186)
Q Consensus 49 ~~g~~i~~~pdkD~TD~e~Al~~~~~~~~~~~i~v~G~~Gg 89 (186)
+.+.+++..+++-. +....++.+ .+...++++|+.+-
T Consensus 48 ~~~~PIll~~~~l~---~~~~~~l~~-~~~~~v~iiGg~~~ 84 (92)
T PF04122_consen 48 KNNAPILLVNNSLP---SSVKAFLKS-LNIKKVYIIGGEGA 84 (92)
T ss_pred hcCCeEEEECCCCC---HHHHHHHHH-cCCCEEEEECCCCc
Confidence 34677777673333 333344443 57889999987764
Done!