RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16241
(186 letters)
>gnl|CDD|153431 cd07995, TPK, Thiamine pyrophosphokinase. Thiamine
pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin
pyrophosphokinase) catalyzes the transfer of a
pyrophosphate group from ATP to vitamin B1 (thiamine) to
form the coenzyme thiamine pyrophosphate (TPP). TPP is
required for central metabolic functions, and thiamine
deficiency is associated with potentially fatal human
diseases. The structure of thiamine pyrophosphokinase
suggests that the enzyme may operate by a mechanism of
pyrophosphoryl transfer similar to those described for
pyrophosphokinases functioning in nucleotide
biosynthesis.
Length = 208
Score = 122 bits (309), Expect = 2e-35
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 21/187 (11%)
Query: 2 IRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPD-Q 60
+ D G + L + PDL+ GDFDS+S + + + G +I+ PD +
Sbjct: 24 LIIAADGGANHLL----DLGI-----VPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEK 74
Query: 61 SYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYK---SSLPIYLLSAKYMS 117
+TDF+KA+ +R D ++ + GRLDH ++N+N L K + I L+ +
Sbjct: 75 DFTDFEKALKLALER-GADEIVILGATGGRLDHTLANLNLLLKYAKDGIKIVLIDEQNEI 133
Query: 118 WVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSS 177
++L G H + L K + LIP+G V + GLK+ L+N TL+FG + +S
Sbjct: 134 FLL--LPGSHTLELEEE----GKYVSLIPLG-EVTGLTLKGLKYPLDNATLSFGSSLGTS 186
Query: 178 NTYENET 184
N + E
Sbjct: 187 NEFTGEK 193
>gnl|CDD|233386 TIGR01378, thi_PPkinase, thiamine pyrophosphokinase. This model
has been revised. Originally, it described strictly
eukaryotic thiamine pyrophosphokinase. However, it is
now expanded to include also homologous enzymes,
apparently functionally equivalent, from species that
rely on thiamine pyrophosphokinase rather than
thiamine-monophosphate kinase (TIGR01379) to produce the
active TPP cofactor. This includes the thiamine
pyrophosphokinase from Bacillus subtilis, previously
designated YloS [Biosynthesis of cofactors, prosthetic
groups, and carriers, Thiamine].
Length = 205
Score = 111 bits (280), Expect = 4e-31
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 29 PDLVTGDFDSVSSNSMGRFLALGSDIVP-TPDQSYTDFQKAVMEITKREKIDYLISIVEF 87
PDL+ GDFDS+ + + G I+ P++ TD + A+ +R D + +
Sbjct: 40 PDLIVGDFDSIDEEELDFYKETGVKIIVFPPEKDTTDLELALKYALER-GADEITILGAT 98
Query: 88 NGRLDHCMSNINTLYKSSLP---IYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGL 144
GRLDH ++N+N L + + + L+ + + +L G ++I P T + L
Sbjct: 99 GGRLDHTLANLNLLLEYAKRGIEVRLIDEQNVIRLLLP--GKYQIFKEPKGT----YISL 152
Query: 145 IPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENET 184
+P G V + + GLK+ LNN L FGG SN +
Sbjct: 153 LPFGGDVHGLTTKGLKYPLNNADLKFGGTRGISNEFIGNK 192
>gnl|CDD|178316 PLN02714, PLN02714, thiamin pyrophosphokinase.
Length = 229
Score = 110 bits (277), Expect = 2e-30
Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 10/164 (6%)
Query: 27 YWPDLVTGDFDSVSSNSMGRFLALGSDIVP-TPDQSYTDFQKAVMEITKR----EKIDYL 81
Y PD++ GD DS+ + + LG+ IV + DQ TD K + I +K +
Sbjct: 53 YKPDVIKGDMDSIRPEVLDFYSNLGTKIVDESHDQDTTDLHKCIAYIRDSTPDLDKSNLC 112
Query: 82 ISIV-EFNGRLDHCMSNINTLYK-SSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGK 139
I ++ GR DH NIN LY+ L I LLS + +L A H IH++
Sbjct: 113 ILVLGALGGRFDHEAGNINVLYRFPDLRIVLLSDDCLIRLLPAT-HRHEIHIDSSVEG-- 169
Query: 140 KTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENE 183
GLIP+G P +TGL+WNL+N + FGG++S+SN + +
Sbjct: 170 PHCGLIPIGGPSASTTTTGLQWNLDNTEMRFGGLISTSNIVKED 213
>gnl|CDD|217995 pfam04263, TPK_catalytic, Thiamin pyrophosphokinase, catalytic
domain. Family of thiamin pyrophosphokinase
(EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyzes
the transfer of a pyrophosphate group from ATP to
vitamin B1 (thiamin) to form the coenzyme thiamin
pyrophosphate (TPP). Thus, TPK is important for the
formation of a coenzyme required for central metabolic
functions. The structure of thiamin pyrophosphokinase
suggest that the enzyme may operate by a mechanism of
pyrophosphoryl transfer similar to those described for
pyrophosphokinases functioning in nucleotide
biosynthesis.
Length = 122
Score = 83.2 bits (206), Expect = 5e-21
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 1 KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQ 60
+R D G +R FL PD + GDFDS++ + G ++V P++
Sbjct: 16 DLRVAADGGANRLRDFL--------GLKPDFIVGDFDSITEELRALYKEAGVNLVHFPEK 67
Query: 61 SYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYK---SSLPIYLLS 112
TD + A+ E + D ++ + GRLDH ++N+N L + + I+LL
Sbjct: 68 DDTDLELALKEALQLG-ADEIVILGALGGRLDHALANLNLLLRLAYTDNTIFLLD 121
>gnl|CDD|224480 COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].
Length = 212
Score = 81.9 bits (203), Expect = 1e-19
Identities = 51/173 (29%), Positives = 72/173 (41%), Gaps = 17/173 (9%)
Query: 9 GTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKA 68
D L + L P DL GDFDSVS + + I ++ TD + A
Sbjct: 29 AADGGANHLLELGLVP-----DLAVGDFDSVSEELLAYYKEKTVTIKFPAEKDSTDLELA 83
Query: 69 VMEITKREKIDYLISIVEFNGRLDHCMSNINTLY---KSSLPIYLLSAKYMSWVLRANAG 125
+ E +R + +I + GRLDH ++N+ L KS I L+S + + L G
Sbjct: 84 LDEALERGADEIVI-LGALGGRLDHALANLFLLLRPAKSGFKITLISGQNLITPLP--PG 140
Query: 126 LHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSN 178
H I +PG+ I G V + G K+ L N L FG S SN
Sbjct: 141 QHTIEKDPGYLY------SIFGGEDVAGLTIKGAKYPLKNADLPFGSSRSISN 187
>gnl|CDD|217997 pfam04265, TPK_B1_binding, Thiamin pyrophosphokinase, vitamin B1
binding domain. Family of thiamin pyrophosphokinase
(EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyzes
the transfer of a pyrophosphate group from ATP to
vitamin B1 (thiamin) to form the coenzyme thiamin
pyrophosphate (TPP). Thus, TPK is important for the
formation of a coenzyme required for central metabolic
functions. The structure of thiamin pyrophosphokinase
suggest that the enzyme may operate by a mechanism of
pyrophosphoryl transfer similar to those described for
pyrophosphokinases functioning in nucleotide
biosynthesis.
Length = 66
Score = 59.5 bits (145), Expect = 1e-12
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 125 GLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENET 184
G H I P K +P+G PV + + GLK+ L N L+FG +S+SN + +ET
Sbjct: 1 GKHLIKKEPD----YKYCSFLPLGEPVN-LTTKGLKYPLTNQDLSFGSSISTSNEFIDET 55
>gnl|CDD|214953 smart00983, TPK_B1_binding, Thiamin pyrophosphokinase, vitamin B1
binding domain. Thiamin pyrophosphokinase (TPK)
catalyzes the transfer of a pyrophosphate group from ATP
to vitamin B1 (thiamin) to form the coenzyme thiamin
pyrophosphate (TPP). Thus, TPK is important for the
formation of a coenzyme required for central metabolic
functions. The structure of thiamin pyrophosphokinase
suggest that the enzyme may operate by a mechanism of
pyrophosphoryl transfer similar to those described for
pyrophosphokinases functioning in nucleotide
biosynthesis.
Length = 66
Score = 52.2 bits (126), Expect = 9e-10
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 138 GKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTY 180
K LIP+G V + + GLK+ L N L+FG +S+SN +
Sbjct: 10 DGKYCSLIPLG-DVAGLTTKGLKYPLENADLSFGSSLSTSNEF 51
>gnl|CDD|185092 PRK15138, PRK15138, aldehyde reductase; Provisional.
Length = 387
Score = 31.3 bits (71), Expect = 0.28
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 33 TGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISI 84
TG D V G + I P P +Y KAV ++ + EKI +L+++
Sbjct: 44 TGVLDQVLDALKGMDVLEFGGIEPNP--TYETLMKAV-KLVREEKITFLLAV 92
>gnl|CDD|235876 PRK06849, PRK06849, hypothetical protein; Provisional.
Length = 389
Score = 30.8 bits (70), Expect = 0.40
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 55 VPTPDQSYTDFQKAVMEITKREKIDYLISIVE 86
+P+P + +A++ I +RE ID LI E
Sbjct: 54 IPSPRWDPDAYIQALLSIVQRENIDLLIPTCE 85
>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of
methylene-tetrahydrofolate
dehydrogenase/cyclohydrolase. NADP binding domain of
the Methylene-Tetrahydrofolate
Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase)
bifunctional enzyme. Tetrahydrofolate is a versatile
carrier of activated one-carbon units. The major
one-carbon folate donors are N-5
methyltetrahydrofolate, N5,N10-m-THF, and
N10-formayltetrahydrofolate. The oxidation of metabolic
intermediate m-THF to m-THF requires the enzyme m-THF
DH. In addition, most DHs also have an associated
cyclohydrolase activity which catalyzes its hydrolysis
to N10-formyltetrahydrofolate. m-THF DH is typically
found as part of a multifunctional protein in
eukaryotes. NADP-dependent m-THF DH in mammals, birds
and yeast are components of a trifunctional enzyme with
DH, cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, monofucntional DH,
as well as bifunctional m-THF m-THF DHm-THF
DHDH/cyclodrolase are found. In addition, yeast (S.
cerevisiae) also express an monofunctional DH. This
family contains the bifunctional DH/cyclohydrolase.
M-THF DH, like other amino acid DH-like NAD(P)-binding
domains, is a member of the Rossmann fold superfamily
which includes glutamate, leucine, and phenylalanine
DHs, m-THF DH, methylene-tetrahydromethanopterin DH,
m-THF DH/cyclohydrolase, Shikimate DH-like proteins,
malate oxidoreductases, and glutamyl tRNA reductase.
Amino acid DHs catalyze the deamination of amino acids
to keto acids with NAD(P)+ as a cofactor. The
NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
Length = 168
Score = 28.7 bits (65), Expect = 1.2
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 35 DFDSVSSNSMGRFLALGSDIVP-TPDQSYTDFQKAVMEITKREKIDY 80
D D + ++GR +P TP ++E+ KR ID
Sbjct: 4 DVDGLHPVNLGRLALGRPGFIPCTP--------AGILELLKRYGIDL 42
>gnl|CDD|222575 pfam14160, FAM110_C, Centrosome-associated C terminus. This is the
C-terminus of a family of proteins that colocalise with
the centrosome/microtubule organisation centre in
interphase and at the spindle poles in mitosis.
Length = 112
Score = 28.1 bits (63), Expect = 1.2
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 30 DLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFNG 89
D+V+ F S S S SD + D Q E E++ Y +S++E N
Sbjct: 52 DIVSLSFRSASVVS--------SDSSRSRDSGEGLDQ----EEALAERVPYGVSVIERNA 99
Query: 90 R 90
R
Sbjct: 100 R 100
>gnl|CDD|215099 PLN00197, PLN00197, beta-amylase; Provisional.
Length = 573
Score = 28.8 bits (64), Expect = 1.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 32 VTGDFDSVSSNSMGR----FLALGSDIVP-----TPDQSYTDFQKA 68
V D D ++ GR +++LG D +P TP Q Y DF +A
Sbjct: 209 VDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRA 254
>gnl|CDD|224849 COG1938, COG1938, Archaeal enzymes of ATP-grasp superfamily
[General function prediction only].
Length = 244
Score = 28.1 bits (63), Expect = 2.7
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 43 SMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISI--VEFNGRLD 92
S LAL SD+ P P + AV+E + ++ +IS+ + R +
Sbjct: 74 SSDGVLALVSDV-PIPPAVIYEISNAVVEWAEENGVEEVISLGGMPARLREE 124
>gnl|CDD|197317 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain;
uncharacterized family 1. This family of
uncharacterized proteins belongs to a superfamily that
includes the catalytic domain
(exonuclease/endonuclease/phosphatase, EEP, domain) of a
diverse set of proteins including the ExoIII family of
apurinic/apyrimidinic (AP) endonucleases, inositol
polyphosphate 5-phosphatases (INPP5), neutral
sphingomyelinases (nSMases), deadenylases (such as the
vertebrate circadian-clock regulated nocturnin),
bacterial cytolethal distending toxin B (CdtB),
deoxyribonuclease 1 (DNase1), the endonuclease domain of
the non-LTR retrotransposon LINE-1, and related domains.
These diverse enzymes share a common catalytic mechanism
of cleaving phosphodiester bonds. Their substrates range
from nucleic acids to phospholipids and perhaps,
proteins.
Length = 252
Score = 28.0 bits (63), Expect = 2.8
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 29 PDLVTGDFDSVSSNSMGRFLALG-----SDIVPTPDQ----SYTDFQKAVMEITKREKID 79
P ++TGDF++ + + L G D T D ++ F+ +ID
Sbjct: 162 PVILTGDFNAEPDSEPYKTLTSGGLKDARDTAATTDGGPEGTFHGFKG----PPGGSRID 217
Query: 80 Y 80
Y
Sbjct: 218 Y 218
>gnl|CDD|145208 pfam01916, DS, Deoxyhypusine synthase. Eukaryotic initiation
factor 5A (eIF-5A) contains an unusual amino acid,
hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The
first step in the post-translational formation of
hypusine is catalyzed by the enzyme deoxyhypusine
synthase (DS) EC:1.1.1.249. The modified version of
eIF-5A, and DS, are required for eukaryotic cell
proliferation.
Length = 297
Score = 27.8 bits (62), Expect = 3.6
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 57 TPDQSYTDFQKAVMEI---------TKREKIDYLISIVEFNGRLDHCMSNINTLYKSSLP 107
P+++Y F++ +M I + + I E ++ S + +K+++P
Sbjct: 112 VPNENYEAFEEWLMPIFEKMLEEQEKEGKIWTPSEFIHELGKEINDERSVLYWAHKNNIP 171
Query: 108 IY 109
I+
Sbjct: 172 IF 173
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate
transferase; Reviewed.
Length = 307
Score = 27.0 bits (61), Expect = 5.8
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 53 DIVPTPDQSYT------DFQKAVMEITKREKI 78
DI+ P +SY+ D A+ +I R K+
Sbjct: 65 DILD-PTESYSVADFQRDALAAIADILARGKL 95
>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase
component YidC; Provisional.
Length = 795
Score = 27.5 bits (61), Expect = 6.0
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 142 LGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGM 173
L L+ G VYS+G W+ T F +
Sbjct: 80 LLLLTQGGSAPSVYSSGTSWSFIEQTSTFDNI 111
>gnl|CDD|219225 pfam06905, FAIM1, Fas apoptotic inhibitory molecule (FAIM1). This
family consists of several fas apoptotic inhibitory
molecule (FAIM1) proteins. FAIM expression is
upregulated in B cells by anti-Ig treatment that induces
Fas-resistance, and overexpression of FAIM diminishes
sensitivity to Fas-mediated apoptosis of B and non-B
cell lines. FAIM1 is highly evolutionarily conserved and
is widely expressed in murine tissues, suggesting that
FAIM plays an important role in cellular physiology.
Length = 178
Score = 26.7 bits (59), Expect = 6.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 118 WVLRANAGLHRIHLNPGFTSGKK 140
W + + G+HRI G TSGK+
Sbjct: 9 WDVALSDGVHRIEFEHGTTSGKR 31
>gnl|CDD|183683 PRK12686, PRK12686, carbamate kinase; Reviewed.
Length = 312
Score = 26.9 bits (60), Expect = 7.3
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 48 LALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVE 86
+ALG + + + + Q AV E + +L+ ++E
Sbjct: 7 IALGGNAILQTEATAEAQQTAVREAAQ-----HLVDLIE 40
>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like. 2-enoyl
thioester reductase (ETR) catalyzes the NADPH-dependent
conversion of trans-2-enoyl acyl carrier
protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty
acid synthesis. 2-enoyl thioester reductase activity has
been linked in Candida tropicalis as essential in
maintaining mitiochondrial respiratory function. This
ETR family is a part of the medium chain
dehydrogenase/reductase family, but lack the zinc
coordination sites characteristic of the alcohol
dehydrogenases in this family. NAD(P)(H)-dependent
oxidoreductases are the major enzymes in the
interconversion of alcohols and aldehydes, or ketones.
Alcohol dehydrogenase in the liver converts ethanol and
NAD+ to acetaldehyde and NADH, while in yeast and some
other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation. ADH
is a member of the medium chain alcohol dehydrogenase
family (MDR), which has a NAD(P)(H)-binding domain in a
Rossmann fold of a beta-alpha form. The NAD(H)-binding
region is comprised of 2 structurally similar halves,
each of which contacts a mononucleotide. The N-terminal
catalytic domain has a distant homology to GroES.
These proteins typically form dimers (typically higher
plants, mammals) or tetramers (yeast, bacteria), and
have 2 tightly bound zinc atoms per subunit, a catalytic
zinc at the active site and a structural zinc in a lobe
of the catalytic domain. NAD(H) binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
Candida tropicalis enoyl thioester reductase (Etr1p)
catalyzes the NADPH-dependent reduction of trans-2-enoyl
thioesters in mitochondrial fatty acid synthesis. Etr1p
forms homodimers with each subunit containing a
nucleotide-binding Rossmann fold domain and a catalytic
domain.
Length = 323
Score = 26.9 bits (60), Expect = 7.3
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 46 RFLALGSDIVPTPDQSYTDFQKAVMEITKREKID 79
ALG+D V D S D + V E T
Sbjct: 178 ELKALGADEVI--DSSPEDLAQRVKEATGGAGAR 209
>gnl|CDD|179460 PRK02693, PRK02693, apocytochrome f; Reviewed.
Length = 312
Score = 26.9 bits (60), Expect = 7.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 153 QVYSTGLKWNLNNHTLAFGGMVSSSNTYENETT 185
QVY TG K N N T + G ++S T E+
Sbjct: 186 QVYPTGEKSNNNVFTASAAGTITSIETGEDGGY 218
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 26.5 bits (59), Expect = 8.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 105 SLPIYLLSAKYMSWVLRANAGL 126
S+P+Y Y+SW N GL
Sbjct: 526 SIPVYFKWLSYLSWFRYGNEGL 547
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.413
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,406,146
Number of extensions: 847282
Number of successful extensions: 666
Number of sequences better than 10.0: 1
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 24
Length of query: 186
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 95
Effective length of database: 6,901,388
Effective search space: 655631860
Effective search space used: 655631860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)