RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16241
         (186 letters)



>2g9z_A Thiamine pyrophosphokinase; thiamin-PNP, TPK, thiamin
           pyrophosphokinase, structural GENO profun, bacterial
           targets at IGS-CNRS, france, BIGS; HET: VNP; 1.96A
           {Candida albicans} PDB: 2hh9_A*
          Length = 348

 Score =  125 bits (315), Expect = 3e-35
 Identities = 53/240 (22%), Positives = 90/240 (37%), Gaps = 57/240 (23%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPAL-------YWPDLVTGDFDSVSSNSMGRFLALGSD 53
           +I    D G +    + N +N            Y PD + GDFDS+S +    + + GS 
Sbjct: 85  EIIVCADGGANSLYEYFNDNNHHHHHENLQRSDYIPDYIVGDFDSISPDVKTYYESHGSK 144

Query: 54  IVPTPDQSYTDFQKAVMEITKR----------------------------------EKID 79
           I+    Q Y DF K++  I                                       ID
Sbjct: 145 IIRQSSQYYNDFTKSIHCIQLHYQLNHTKENWFESIDEVDGLAKLWNGLNNSSDVVVDID 204

Query: 80  YLISIV-EFNGRLDHCMSNINTLYKSS-----LPIYLLSAKYMSWVLRANAGLHRIHLNP 133
             I ++    GR D  + +IN LY  +     + ++ ++   + ++L+   G++ I    
Sbjct: 205 ITIYVLNAIGGRFDQTVQSINQLYIMNEDYPKVTVFFITTNDIIFLLKK--GVNYISYKN 262

Query: 134 GFTSGK-------KTLGLIPVGSPVQQVYST-GLKWNLNNHTLAFGGMVSSSNTYENETT 185
                K        T GL+P+ +    + ++ GLK+++ N      G VSSSN    ET 
Sbjct: 263 RLMFHKDNGSSPTPTCGLLPLSNKTPIILNSYGLKYDMRNWKTEMLGQVSSSNRISGETG 322


>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural
           genomics consortium, transferase; HET: TPP; 1.80A {Homo
           sapiens} PDB: 1ig3_A* 2f17_A*
          Length = 247

 Score =  120 bits (302), Expect = 2e-34
 Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 16/194 (8%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQ 60
            +R   D G +R              + P+ + GDFDS+       +   G +++ TPDQ
Sbjct: 44  LLRACADGGANRLYDITEGERES---FLPEFINGDFDSIRPEVREYYATKGCELISTPDQ 100

Query: 61  SYTDFQKAVMEITKRE-----KIDYLISIVEFNGRLDHCMSNINTLYK----SSLPIYLL 111
            +TDF K +  + K+      K+D ++++    GR D  M+++NTL++    +  PI ++
Sbjct: 101 DHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIII 160

Query: 112 SAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFG 171
             + + ++L+     HR+H++ G        GLIPVG P  QV +TGLKWNL N  LAFG
Sbjct: 161 QEESLIYLLQPGK--HRLHVDTGME--GDWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFG 216

Query: 172 GMVSSSNTYENETT 185
            +VS+SNTY+    
Sbjct: 217 TLVSTSNTYDGSGV 230


>1ig0_A Thiamin pyrophosphokinase; protein-substrate complex, compound
           active site, alpha-beta- alpha, beta sandwich,
           transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae}
           SCOP: b.82.6.1 c.100.1.1
          Length = 319

 Score =  119 bits (298), Expect = 5e-33
 Identities = 45/234 (19%), Positives = 78/234 (33%), Gaps = 52/234 (22%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQ 60
            ++   D   +R   +L+        Y P+ + GD DS+S      +      I+    Q
Sbjct: 63  DLKVCADGAANRLYDYLDDDETLRIKYLPNYIIGDLDSLSEKVYKYYRKNKVTIIKQTTQ 122

Query: 61  SYTDFQKAVMEI-------------------------------------------TKREK 77
             TDF K V  I                                             +  
Sbjct: 123 YSTDFTKCVNLISLHFNSPEFRSLISNKDNLQSNHGIELEKGIHTLYNTMTESLVFSKVT 182

Query: 78  IDYLISIVEFNGRLDHCMSNINTLYK-----SSLPIYLLSAKYMSWVLRANAGLHRIHLN 132
              L+++    GR D  + +I  LY      S   +  ++   + ++++       I  +
Sbjct: 183 PISLLALGGIGGRFDQTVHSITQLYTLSENASYFKLCYMTPTDLIFLIKK--NGTLIEYD 240

Query: 133 PGF-TSGKKTLGLIPVGSPVQQVYSTGLKWNLNN-HTLAFGGMVSSSNTYENET 184
           P F  +     GL+P+G       + GLKW++ N  T    G VSSSN +  + 
Sbjct: 241 PQFRNTCIGNCGLLPIGEATLVKETRGLKWDVKNWPTSVVTGRVSSSNRFVGDN 294


>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein
           structure initiative, northeast structural genomics
           consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
          Length = 222

 Score = 95.2 bits (236), Expect = 8e-25
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 20/188 (10%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVP-TPD 59
            +   VD+GT      L    + P         GDFDS++     R       +     +
Sbjct: 26  TLWIGVDKGTVT----LLDAGIIP-----VEAFGDFDSITEQERRRIEKAAPALHVYQAE 76

Query: 60  QSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYK---SSLPIYLLSAKYM 116
           +  TD   A+    ++ + D +       GR DH + NI  LYK   +++ I L+  +  
Sbjct: 77  KDQTDLDLALDWALEK-QPDIIQIFGITGGRADHFLGNIQLLYKGVKTNIKIRLIDKQNH 135

Query: 117 SWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSS 176
             +     G + I  +      K+ +  IP    + ++  TG K+ LNN  +  G  +  
Sbjct: 136 IQMFPP--GEYDIEKDEN----KRYISFIPFSEDIHELTLTGFKYPLNNCHITLGSTLCI 189

Query: 177 SNTYENET 184
           SN   +  
Sbjct: 190 SNELIHSR 197


>3mel_A Thiamin pyrophosphokinase family protein; structural genomics,
           PSI-2, protein structure initiative, no structural
           genomics consortium; HET: TPP; 2.79A {Enterococcus
           faecalis}
          Length = 222

 Score = 94.1 bits (233), Expect = 2e-24
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 6   VDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTD 64
           +D+G       L + +L        L  GDFDS+S             ++  P ++  TD
Sbjct: 29  IDRGCLH----LLEADLPL-----QLAVGDFDSLSREEYHFVQETTETLIQAPAEKDDTD 79

Query: 65  FQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYK-----SSLPIYLLSAKYMSWV 119
            Q A+ E  +R     +  I    GR+DH ++N+   ++         I L   +     
Sbjct: 80  TQLALQEALQRFPQAEMTIIGATGGRIDHLLANLWLPFEPRFQGVLRQIRLCDRQNSIQY 139

Query: 120 LRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNT 179
                G + +   P      + L    +  PV+ +     K+ L N  + +    +S+  
Sbjct: 140 YA--PGSYIVPKEPDK----EYLAYCCLT-PVENLTLRRSKYLLTNQDVPYPTSYASNEF 192

Query: 180 YENETT 185
            E    
Sbjct: 193 IEEAAA 198


>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein
           structure initiative, no structural genomics consortium,
           NESG; 2.10A {Geobacillus thermodenitrificans}
          Length = 223

 Score = 94.1 bits (233), Expect = 2e-24
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 18/181 (9%)

Query: 6   VDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTD 64
           VD+GT      L +    P         GDFDS+ +  + +      D+   P ++  TD
Sbjct: 30  VDRGTMT----LLEAGFRP-----VRAFGDFDSLPAEDVVKLQQAFPDLDVWPAEKDKTD 80

Query: 65  FQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYK-SSLPIYLLSAKYMSWVLRAN 123
            + A+    ++     +       GRLDH   N+  L K +  PI ++  + +  V    
Sbjct: 81  MEIALDWAVEQ-TARCIRLFGATGGRLDHLFGNVELLLKYADRPIEIVDRQNVLTVHLP- 138

Query: 124 AGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENE 183
            G + +  +         +  IPV   V +   TG K+ L N  ++ G  +  SN     
Sbjct: 139 -GTYTVMYDAR----YCYVSYIPVSETVAEFTLTGFKYPLTNCHISRGSTLCISNELIQS 193

Query: 184 T 184
           +
Sbjct: 194 S 194


>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein
           structure initiative, northeast structural genomics
           consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus
           mutans}
          Length = 218

 Score = 90.9 bits (225), Expect = 4e-23
 Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 20/182 (10%)

Query: 9   GTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTP-DQSYTDFQK 67
           G D+   FL ++ L       DL  GDFDSVS+    +  A    +V  P +++ TD + 
Sbjct: 24  GIDKGSSFLLKNQLPL-----DLAIGDFDSVSAEEFKQIKAKAKKLVMAPAEKNDTDTEL 78

Query: 68  AVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSL-----PIYLLSAKYMSWVLRA 122
           A+  I        +I    F GR+DH +SNI       L        L   + +      
Sbjct: 79  ALKTIFDCFGRVEIIVFGAFGGRIDHMLSNIFLPSDPDLAPFMRCFKLRDEQNLVEFF-- 136

Query: 123 NAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYEN 182
            AG H+I              +  + +    +     K+ L      F   + SSN +++
Sbjct: 137 PAGQHQIEQATDMVY------ISFMAANGAHLSIQDAKYELTEENY-FQKKIYSSNEFKD 189

Query: 183 ET 184
           + 
Sbjct: 190 KP 191


>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase,
           thiamine pyrophosphokinase, NESG, LPR114, structural
           genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}
          Length = 227

 Score = 86.4 bits (213), Expect = 2e-21
 Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 24/185 (12%)

Query: 6   VDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVP-TPDQSYTD 64
            D+G  R +    +  + P      +V GDFDS+ +  +          +   PDQ +TD
Sbjct: 30  ADRGALRLV----KRGIQP-----VMVVGDFDSIDAAELQTVKDALVGAIVVKPDQDHTD 80

Query: 65  FQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSL-----PIYLLSAKYMSWV 119
            Q A+  I ++ + D +       GRLDH ++N+  +           I L+  +     
Sbjct: 81  TQLAIKSIFEQLQPDEVHLYGATGGRLDHLLANMWLVLDPVFRQWAPQIKLIDKQNSVRF 140

Query: 120 LRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVSSSNT 179
                G ++I         K+ L  +P+      +     K+ L+    A+  +  +SN 
Sbjct: 141 FL--PGDYQITKEA----DKRYLAFVPLMP--MHLTLPDEKYQLDAAYNAY-PISWASNE 191

Query: 180 YENET 184
           +   T
Sbjct: 192 FSGNT 196


>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate
           biosynthetic process, ATP binding, structural genomics,
           PSI-2; 2.40A {Staphylococcus saprophyticus}
          Length = 212

 Score = 85.6 bits (211), Expect = 4e-21
 Identities = 40/189 (21%), Positives = 62/189 (32%), Gaps = 22/189 (11%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQ 60
           +    +D+GT   L    +  + P         GDFDS+S +                ++
Sbjct: 23  EHWIGIDRGTLILL----ESGITP-----QFAVGDFDSISDSERNFIQQQIEINPYNSEK 73

Query: 61  SYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINTLYKSSL-----PIYLLSAKY 115
             TD    + +  KR     +       GRLDH M  +  L K         I L+    
Sbjct: 74  DDTDLALGIDQAVKR-GYRNIDVYGATGGRLDHFMGALQILEKPEYAKMNINIKLIDDTN 132

Query: 116 MSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVS 175
               +    G   +  +  F      +  IPV      +   G K+NL N TL  G  ++
Sbjct: 133 EIQFI--QKGQFNVTYSEQF----PYISFIPVI-YPTVISLKGFKYNLQNETLKLGSTLT 185

Query: 176 SSNTYENET 184
            SN      
Sbjct: 186 ISNELSQSC 194


>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase,
           structural genomics, protein structure initiative; 1.80A
           {Bacteroides thetaiotaomicron}
          Length = 231

 Score = 73.3 bits (179), Expect = 2e-16
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 14/156 (8%)

Query: 29  PDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVEFN 88
           PD++ GD DS+      RF    S I+   DQ   D  K  +   + + I  +  +    
Sbjct: 75  PDVIIGDGDSLLPEYKKRF---SSIILQISDQETNDQTK-AVHYLQSKGIRKIAIVGATG 130

Query: 89  GRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVG 148
            R DH + NI+ L +       +            +        PG     + + +I  G
Sbjct: 131 KREDHTLGNISLLVEYMRSGMEVRTVTDYGTFIPVSDTQSFASYPG-----QQVSIINFG 185

Query: 149 SPVQQVYSTGLKWNLNNHTLAFGGMVSSSNTYENET 184
              + + + GL + L++ T  + G   + N    + 
Sbjct: 186 --AKGLKAEGLFYPLSDFTNWWQG---TLNEAIADE 216


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.35
 Identities = 38/181 (20%), Positives = 57/181 (31%), Gaps = 75/181 (41%)

Query: 1   KIRC--TVDQ----GTDRWLLFLNQ--------HN--LDPALYWPDLVTGDFDSVSSNSM 44
           K +    +DQ     ++R L F N+        H+  L PA    DL+  D    +    
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS---DLINKDLVKNN---- 447

Query: 45  GRFLALGSDI-VP---TPDQSYTDFQKAVMEITKREKIDYLISIVEFNGRLDHCMSNINT 100
                   DI +P   T D S  D +     I++R        IV+       C+     
Sbjct: 448 --VSFNAKDIQIPVYDTFDGS--DLRVLSGSISER--------IVD-------CII---- 484

Query: 101 LYKSSLPIYLLSAKYMSW--VLRANAGLHRIHLNPGFTSGKKTL----------GLIPVG 148
                LP+         W    +  A  H +   PG  SG   L           +I  G
Sbjct: 485 ----RLPVK--------WETTTQFKA-THILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531

Query: 149 S 149
           +
Sbjct: 532 T 532


>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1,
          ATP-grAsp domain, carbamoylphosphate synthase subunit
          (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
          Length = 331

 Score = 29.8 bits (67), Expect = 0.45
 Identities = 8/47 (17%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 40 SSNSMGRFLALGSDIVPTPDQSYTDFQKAVMEITKREKIDYLISIVE 86
          S  +   ++A    IVP  D+   ++   ++ + + E +  L+++++
Sbjct: 37 SPLASALYMADQHYIVPKIDE--VEYIDHLLTLCQDEGVTALLTLID 81


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 27.9 bits (62), Expect = 2.6
 Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 8/37 (21%)

Query: 17   LNQHNLDPALYWPDLV--------TGDFDSVSSNSMG 45
             N  N+D  L   + V        T    +VS  S G
Sbjct: 1410 RNADNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFG 1446


>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR
           initiative, PSI, joint center for structural genomics,
           ELEC transport; HET: MSE; 1.80A {Thermotoga maritima}
           SCOP: c.23.5.1 d.157.1.3
          Length = 410

 Score = 27.1 bits (60), Expect = 3.4
 Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 49/165 (29%)

Query: 23  DPALYW---PDLVTGDFDS-------VSSNSMGRFLALGSD---IVPTPDQSYTD-FQKA 68
           DP +Y     D     F++       +S N+   +L   +    ++     +Y   F  A
Sbjct: 24  DPEIYVLRIDDDRIRYFEAVWEIPEGISYNA---YLVKLNGANVLIDGWKGNYAKEFIDA 80

Query: 69  VMEITKREKIDYLI-SIVEFNGRLDHCMSNINTLYKSSLPIYLLSAKYMSWVLRANAGLH 127
           + +I   ++I ++I +  E     DH           SLP                  L 
Sbjct: 81  LSKIVDPKEITHIIVNHTE----PDHS---------GSLPAT----------------LK 111

Query: 128 RIHLNPGFTSGKKTLGLIP--VGSPVQQVYSTGLKWNLNNHTLAF 170
            I  +    +      L+    G     V   G +  +      F
Sbjct: 112 TIGHDVEIIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKF 156


>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA,
          anti-ANTI-sigma, sporulation, serine kinase,
          transcription; HET: ADP; 2.40A {Geobacillus
          stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B*
          1til_B* 1auz_A 1buz_A
          Length = 116

 Score = 26.4 bits (59), Expect = 3.6
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 70 MEITKREKIDYLISIVEFNGRLDH 93
          + I    K D LI  V  +G LDH
Sbjct: 3  LAIDLEVKQDVLI--VRLSGELDH 24


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 4.2
 Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 36/139 (25%)

Query: 6   VDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPD--QSYT 63
           +  G   W         D    W  +      ++  +S+        +++   +  + + 
Sbjct: 337 IRDGLATW---------D---NWKHVNCDKLTTIIESSL--------NVLEPAEYRKMFD 376

Query: 64  DFQKAVMEITKREKIDY-LISIVEFNGRLDHCMSNINTLYKSSL-------PIYLLSAKY 115
               +V        I   L+S++ F+      M  +N L+K SL           + + Y
Sbjct: 377 RL--SVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 116 MSWVLRAN--AGLHRIHLN 132
           +   ++      LHR  ++
Sbjct: 433 LELKVKLENEYALHRSIVD 451


>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A
           {Homo sapiens}
          Length = 90

 Score = 25.6 bits (56), Expect = 4.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 118 WVLRANAGLHRIHLNPGFTSGKKTL 142
           W +  + G+H+I    G TSGK+ +
Sbjct: 8   WDVALSDGVHKIEFEHGTTSGKRVV 32


>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich,
          JCSG, structural genomics, joint center for structural
          genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1
          PDB: 1t6r_A* 1vc1_A
          Length = 110

 Score = 25.3 bits (56), Expect = 8.0
 Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 2/24 (8%)

Query: 70 MEITKREKIDYLISIVEFNGRLDH 93
          +++   E+ D  I  V   G +D 
Sbjct: 4  LKLDIVEQDDKAI--VRVQGDIDA 25


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0493    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,824,141
Number of extensions: 157358
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 25
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)