RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16241
         (186 letters)



>d1ig3a2 c.100.1.1 (A:10-178) Thiamin pyrophosphokinase, catalytic
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 169

 Score = 86.5 bits (214), Expect = 2e-22
 Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 12/121 (9%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQ 60
            +R   D G +      +    +   + P+ V+GDFDS+       +   G D++ TPDQ
Sbjct: 51  LLRACADGGANHLY---DLTEGERESFLPEFVSGDFDSIRPEVKEYYTKKGCDLISTPDQ 107

Query: 61  SYTDFQKAVMEITKRE-----KIDYLISIVEFNGRLDHCMSNINTLYKSS----LPIYLL 111
            +TDF K +  + ++      ++D ++++    GR D  M+++NTL++++    +PI ++
Sbjct: 108 DHTDFTKCLQVLQRKIEEKELQVDVIVTLGGLGGRFDQIMASVNTLFQATHITPVPIIII 167

Query: 112 S 112
            
Sbjct: 168 Q 168


>d1ig0a2 c.100.1.1 (A:3-223) Thiamin pyrophosphokinase, catalytic
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 221

 Score = 78.2 bits (192), Expect = 9e-19
 Identities = 26/148 (17%), Positives = 41/148 (27%), Gaps = 43/148 (29%)

Query: 1   KIRCTVDQGTDRWLLFLNQHNLDPALYWPDLVTGDFDSVSSNSMGRFLALGSDIVPTPDQ 60
            ++   D   +R   +L+        Y P+ + GD DS+S      +      I+    Q
Sbjct: 61  DLKVCADGAANRLYDYLDDDETLRIKYLPNYIIGDLDSLSEKVYKYYRKNKVTIIKQTTQ 120

Query: 61  SYTDFQKAVMEITKREKIDYLISIVEFN-------------------------------- 88
             TDF K V  I+         S++                                   
Sbjct: 121 YSTDFTKCVNLISLHFNSPEFRSLISNKDNLQSNHGIELEKGIHTLYNTMTESLVFSKVT 180

Query: 89  -----------GRLDHCMSNINTLYKSS 105
                      GR D  + +I  LY  S
Sbjct: 181 PISLLALGGIGGRFDQTVHSITQLYTLS 208


>d1ig0a1 b.82.6.1 (A:224-319) Thiamin pyrophosphokinase,
           substrate-binding domain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 96

 Score = 66.7 bits (163), Expect = 1e-15
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 116 MSWVLRANAGLHRIHLNPGFTSGK-KTLGLIPVGSPVQQVYSTGLKWNLNNHTLAF-GGM 173
           + ++++       I  +P F +      GL+P+G       + GLKW++ N   +   G 
Sbjct: 3   LIFLIKK--NGTLIEYDPQFRNTCIGNCGLLPIGEATLVKETRGLKWDVKNWPTSVVTGR 60

Query: 174 VSSSNTYENET 184
           VSSSN +  + 
Sbjct: 61  VSSSNRFVGDN 71


>d1ig3a1 b.82.6.1 (A:179-263) Thiamin pyrophosphokinase,
           substrate-binding domain {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 85

 Score = 66.3 bits (162), Expect = 1e-15
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 116 MSWVLRANAGLHRIHLNPGFTSGKKTLGLIPVGSPVQQVYSTGLKWNLNNHTLAFGGMVS 175
           + ++L+   G HR+H++ G        GLIPVG P  QV +TGLKWNL N  L FG +VS
Sbjct: 3   LIYLLQP--GKHRLHVDTGME--GSWCGLIPVGQPCNQVTTTGLKWNLTNDVLGFGTLVS 58

Query: 176 SSNTYENETT 185
           +SNTY+    
Sbjct: 59  TSNTYDGSGL 68


>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 1449

 Score = 25.6 bits (55), Expect = 4.9
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 68 AVMEITKREKIDYLISIVEFNGRLD 92
          +V +I   E +D   +  +  G  D
Sbjct: 30 SVAKIRFPETMDETQTRAKIGGLND 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 692,914
Number of extensions: 29823
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 7
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)