Query psy16242
Match_columns 383
No_of_seqs 226 out of 1764
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 16:26:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3646|consensus 100.0 2.6E-66 5.6E-71 504.1 17.7 319 17-357 153-485 (486)
2 TIGR00860 LIC Cation transport 100.0 9.8E-55 2.1E-59 443.3 18.9 310 6-351 145-457 (459)
3 KOG3645|consensus 100.0 4.4E-49 9.6E-54 400.5 18.4 296 9-339 147-448 (449)
4 PF02932 Neur_chan_memb: Neuro 100.0 7.1E-39 1.5E-43 288.9 -7.4 229 115-350 1-237 (237)
5 KOG3643|consensus 100.0 3.2E-33 6.9E-38 271.9 5.9 169 17-198 162-332 (459)
6 KOG3644|consensus 100.0 1.7E-30 3.7E-35 261.8 3.5 170 16-198 171-341 (457)
7 KOG3642|consensus 99.9 1.8E-28 3.9E-33 240.1 4.1 179 4-197 160-339 (466)
8 PF02931 Neur_chan_LBD: Neurot 99.3 3.3E-12 7.2E-17 117.6 9.6 87 18-108 129-217 (217)
9 PF14494 DUF4436: Domain of un 87.7 0.22 4.7E-06 47.4 0.8 91 96-187 152-247 (256)
10 PRK13743 conjugal transfer pro 43.6 48 0.001 28.1 4.6 33 316-349 23-55 (141)
11 PF13721 SecD-TM1: SecD export 42.0 15 0.00033 29.7 1.5 35 332-366 3-37 (101)
12 PRK14762 membrane protein; Pro 27.4 61 0.0013 19.3 2.0 19 332-350 2-20 (27)
13 KOG4647|consensus 20.9 1.3E+02 0.0028 28.0 3.8 32 319-350 91-123 (263)
No 1
>KOG3646|consensus
Probab=100.00 E-value=2.6e-66 Score=504.11 Aligned_cols=319 Identities=35% Similarity=0.584 Sum_probs=256.4
Q ss_pred CCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCCCCcc
Q psy16242 17 HPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYL 96 (383)
Q Consensus 17 ~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~~y~ 96 (383)
-|+++||||.|.|.+ +||||+|++..++++.... ++++|++.|..||||++.+.++++.+..|.||+++|+
T Consensus 153 iDItwFPFD~Q~C~m----KFGSWTY~G~~lDL~~~~~-----~g~~Dls~yi~NGEW~Ll~~pakr~~~~y~cC~epY~ 223 (486)
T KOG3646|consen 153 IDITWFPFDDQVCYL----KFGSWTYAGILLDLRIDDE-----DGGIDLSTYIPNGEWDLLGTPAKREEKTYDCCPEPYP 223 (486)
T ss_pred EEEEEecccccEEEE----EeeeEEEcceeeeeeeccc-----cCCcchhhcccCCceeeccccccceeeecccCCCCcc
Confidence 399999999999999 9999999999999997532 4458999999999999999999999999999999999
Q ss_pred eEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhhhh
Q psy16242 97 DITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLI 176 (383)
Q Consensus 97 ~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f~~ 176 (383)
+++|++++|||.+||.+|+++||++++++++++|-+|+|+|||+++++|++|+.++|+.++++..|+||+++|+||.||.
T Consensus 224 dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~gEKitL~iTilLsvc~FL~mvse~~PpTSeaVPllg~fFs 303 (486)
T KOG3646|consen 224 DVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDAGEKITLQITILLSVCFFLTMVSEMTPPTSEAVPLLGAFFS 303 (486)
T ss_pred eeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccccceeeeeeehHHHHHHHHHHHHhhcCCccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhheeeEEEEEEeecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCCCCCCCCC--CCCCCC-CccccCC
Q psy16242 177 FAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPL--IGGSGG-SCKIHGH 253 (383)
Q Consensus 177 ~~~~~v~~sli~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~~~--~~~~~~-~~~~~~~ 253 (383)
+||++|++|++.||+|+|+|||+|++|.|++|.|++|+.|+|++|+|+||........ ..++. ...... ..+....
T Consensus 304 c~m~iv~~SvvfTv~vLn~h~R~p~~h~m~p~~r~vfL~wlpwll~M~rP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 382 (486)
T KOG3646|consen 304 CCMFIVAASVVFTVIVLNLHHRTPETHEMSPWTRSVFLEWLPWLLRMKRPFILRRTHP-SLRMKELDRKLKRGEHKSAEA 382 (486)
T ss_pred HHHHHHHhhheeEEEEEeeeccCccccccCHHHHHHHHHHHHHHHHhcCCCccccCCc-hhhhhhhhhhcccccccchhh
Confidence 9999999999999999999999999999999999999999999999999933222111 00000 000000 0000000
Q ss_pred CcccccccccccCC--CCCCCCCCCC--CC-CCC---CCC---CchHHHHHHHHHHHHHHHhhccccccccccchhhhhh
Q psy16242 254 VSLSNILTEAILSS--SPQDDSKHLR--PP-AFS---HAQ---CPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKED 322 (383)
Q Consensus 254 ~~~~~~~~~~~~~~--~~~~~~~~~~--~~-~~~---~~~---~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~E 322 (383)
... ....... ..+...+... +. ..+ ... ...+++.+.++++.|.+++++++++++ +++|
T Consensus 383 --~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~~~~------~~~d 452 (486)
T KOG3646|consen 383 --NGL--DGFDLFNQRVSQSLTPRGRTASLPVISEHVSTATQFILKELHLILKELRAILDRMEEDDKEEA------LQSD 452 (486)
T ss_pred --hcc--ccccCCCccccCCCCCcccccCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH------HHhh
Confidence 000 0000000 0000000000 00 000 000 124567888999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhhhcCCccc
Q psy16242 323 WKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLY 357 (383)
Q Consensus 323 Wk~vA~VlDRlfL~iF~l~~~v~T~~i~~~~p~~~ 357 (383)
|||+|||+||+||++|+++++++ +|++.+|++.
T Consensus 453 WkFAAmvVDRlCL~~Fs~fiii~--~i~~~~p~l~ 485 (486)
T KOG3646|consen 453 WKFAAMVVDRLCLLAFSVFIVMC--GILLSAPHLV 485 (486)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH--HHhhcCCccC
Confidence 99999999999999999999888 8899999875
No 2
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=100.00 E-value=9.8e-55 Score=443.30 Aligned_cols=310 Identities=25% Similarity=0.301 Sum_probs=247.2
Q ss_pred cccCCcceee--cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEE
Q psy16242 6 SCVPAKDEHH--HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVR 83 (383)
Q Consensus 6 ~~~p~~~~~~--~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~ 83 (383)
.|.|+....+ ..|+++||||+|+|++ +||||+|+.+++++.|... + ....+.+.|..++||++.+....+
T Consensus 145 ~~~~~~~~~~~C~~d~~~FPfD~Q~C~l----~fgSw~y~~~~i~l~~~~~-~---~v~~~~~~~~~~~eW~l~~~~~~~ 216 (459)
T TIGR00860 145 LYSPRITLTLACPMDLRNFPFDVQNCSL----KFESWGYTTNDIKLEWKEQ-G---AVQVDDSLFISLPEFELLGVYGTR 216 (459)
T ss_pred EEecCceEEecccceeccCCCCCccccE----EEhhhccccceEEEEECCC-C---ceEechhhccccCceEEEeeeeee
Confidence 3555555555 4599999999999999 9999999999999998543 1 234567778899999999987776
Q ss_pred eeeeeccCCCCcceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCC-CCCeEEehhhHHHHHHHHHHHHHhhCC
Q psy16242 84 NEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSD-SGEKVTLSISILISLHVFFLLVVEIIP 162 (383)
Q Consensus 84 ~~~~y~~~~~~y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~-s~eRv~l~it~lLs~~vfl~~v~~~lP 162 (383)
+. .|.||+++|++++|+++++|+++||++++++||+++++++|++||+|++ +|||+++|+|+||++++|+..+++.+|
T Consensus 217 ~~-~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf~~~v~~~lP 295 (459)
T TIGR00860 217 YC-TSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLP 295 (459)
T ss_pred eE-ecccCCCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHHHHHHHhhCC
Confidence 65 6889999999999999999999999999999999999999999999999 699999999999999999999999999
Q ss_pred CCccccccchhhhhHHHhhhhheeeEEEEEEeecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCCCCCCCCCCC
Q psy16242 163 PTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIG 242 (383)
Q Consensus 163 ~tS~~iP~i~~f~~~~~~~v~~sli~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~ 242 (383)
++| ++|+||+|+++||+++++|++++++|+|+|||++.+++ |++|++++|+++||++|+......... ..+.
T Consensus 296 ~~S-~vpli~~y~~~~~~~v~~sli~tv~V~~~~~~~~~~~~-----r~~~l~~l~~~l~~~~~~~~~~~~~~~--~~~~ 367 (459)
T TIGR00860 296 AVS-YVKAIDVYFAVCMAFVFLALLETAFVNYVHHKDPAQGK-----RHLLLERCAWRLCKQEPGEDYRRPALD--HASL 367 (459)
T ss_pred Ccc-hHHHHHHHHHHHHHHHHHHHHHHHhheeEEccCCCCCc-----eehHHhhchHHhcccCccccccccccc--cccc
Confidence 999 89999999999999999999999999999999987775 999999999999999987543211100 0000
Q ss_pred CCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhh
Q psy16242 243 GSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKED 322 (383)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~E 322 (383)
...+.... .. .+ ... ...... ... ... ......++++++.+++++| +|++++++.++ .++|
T Consensus 368 ~~~~~~~~--~~--~~---~~~-~~~~~~-~~~-~~~--~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~------~~~~ 428 (459)
T TIGR00860 368 SSVEMRAK--DG--GR---GLE-SPTERQ-RLL-HSP--PPAEGDLDLAGILEEVRIA-HRFRKRDESEE------VVRD 428 (459)
T ss_pred chhccccc--cc--cc---ccC-Cccccc-ccC-CCC--CccccCHHHHHHHhhhhHH-HHHHhhhhhhc------ccch
Confidence 00000000 00 00 000 000000 000 000 0001236899999999999 99999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q psy16242 323 WKYVALVLDRLFLWIFTLAVLGGTAGIIL 351 (383)
Q Consensus 323 Wk~vA~VlDRlfL~iF~l~~~v~T~~i~~ 351 (383)
||++|+|+||+|||+|.++++++|+++++
T Consensus 429 W~~~a~viDr~~~~~f~~~~~~~~~~~~~ 457 (459)
T TIGR00860 429 WKFRAKVIDKLSRMAFPLAFLLFNIGYWM 457 (459)
T ss_pred hhhccchhhHHHHHHHHHHHHHhhhhheE
Confidence 99999999999999999999999999875
No 3
>KOG3645|consensus
Probab=100.00 E-value=4.4e-49 Score=400.54 Aligned_cols=296 Identities=48% Similarity=0.837 Sum_probs=239.7
Q ss_pred CCcceeecC-CcccCcccceeeecCCCCeEeeCCccCCeEE-EecCCCCCCccccc--cccccccccceEEecccCeEEe
Q psy16242 9 PAKDEHHHH-PESFYPYHTAARSTEDLSRFKRESSRKNKDD-LSPRRPPHRRERVG--VDLSEFYMSVEWDILEVPAVRN 84 (383)
Q Consensus 9 p~~~~~~~~-~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~-l~~~~~~~~~~~~~--~~l~~~~~~~EW~l~~~~~~~~ 84 (383)
|+.-..++. |+++||||.|+|.+ .||||.|+.++++ +... ... .++++|.+|+||++.+.++.++
T Consensus 147 p~i~~s~C~idv~~FPfD~Q~C~i----~f~sw~~~~~~i~~~~~~-------~~~~~~~~~~~~~n~eW~l~~~~~~~~ 215 (449)
T KOG3645|consen 147 PAIYKSSCPIDVTYFPFDVQNCSI----KFGSWTYDGSEVDGLDLN-------AQTIEVDLSDFIENSEWELLSVTVVRE 215 (449)
T ss_pred ceEEEeecccccccCCCcceeEeE----EEeccccCccccceeeec-------cccccCCHHHcCCCCcEEEEeeeeEEe
Confidence 444344455 89999999999999 9999999999876 4432 122 7899999999999999999999
Q ss_pred eeeeccCCCCcceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCCC-CeEEehhhHHHHHHHHHHHHHhhCCC
Q psy16242 85 EKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSG-EKVTLSISILISLHVFFLLVVEIIPP 163 (383)
Q Consensus 85 ~~~y~~~~~~y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~-eRv~l~it~lLs~~vfl~~v~~~lP~ 163 (383)
...|.||++.|++++|++++||||+||++++++||++++++++++||+|.+++ ||+++|+|+||++++|++++++.+|+
T Consensus 216 ~~~~~~~~~~~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~ll~vs~~~P~ 295 (449)
T KOG3645|consen 216 EKKYDCCPGPYSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVFLLLVSDKMPP 295 (449)
T ss_pred ecccCCCCCceeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHHHHHHHhhcCC
Confidence 88888999999999999999999999999999999999999999999998886 99999999999999999999999999
Q ss_pred CccccccchhhhhHHHhhhhheeeEEEEEEeecccCCCCC-CCCcchhhhhcccccceeeecCCCCCCCCCCCCCCCCCC
Q psy16242 164 TSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTH-KMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIG 242 (383)
Q Consensus 164 tS~~iP~i~~f~~~~~~~v~~sli~tv~v~~l~~r~~~~~-~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~ 242 (383)
+|..+|+||+|+.++|++++++++.+++++++|+|++.++ ++|.|++++|++.+|+.++++++......... ...
T Consensus 296 ts~~iPLig~y~~~~m~~~~~sv~~tv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-- 371 (449)
T KOG3645|consen 296 TSSVIPLIGKYLLFTMVLVTISVVVTVVILNLHHRSPTTHPPMPPWVRRVFLEKLPRLLLMSRPEDELQVSRL--IVL-- 371 (449)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHheeEEeeecccCCCCCCCchHHHHHHHHHHHHHHhcCCcccccccccc--ccc--
Confidence 9988999999999999999999999999999999999988 89999999999999999999988761111000 000
Q ss_pred CCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhh
Q psy16242 243 GSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKED 322 (383)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~E 322 (383)
......... . . ........ .. .. .........+++++.+.+++|+++++++++.++ .++|
T Consensus 372 --~~~~~~~~~----~---~-~~~~~~~~--~~-~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~ 431 (449)
T KOG3645|consen 372 --GISVKLFKI----T---K-SLGSIPVF--SS-AD-PLLSPELSPELRKAIEGVDFIAEHLKSEDNFQE------IRED 431 (449)
T ss_pred --ccccccccc----c---c-cccccccc--cc-cc-ccccccccHHHHHHHHHHHHHHHHHHhHHHHhh------hhHH
Confidence 000000000 0 0 00000000 00 00 000011346788999999999999999999888 9999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16242 323 WKYVALVLDRLFLWIFT 339 (383)
Q Consensus 323 Wk~vA~VlDRlfL~iF~ 339 (383)
|+++|+|+||+|||+|+
T Consensus 432 w~~va~v~dr~~l~~f~ 448 (449)
T KOG3645|consen 432 WKYVAMVLDRLLLWIFL 448 (449)
T ss_pred HHHHHHHHHHHhhheEe
Confidence 99999999999999986
No 4
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=100.00 E-value=7.1e-39 Score=288.86 Aligned_cols=229 Identities=38% Similarity=0.618 Sum_probs=137.4
Q ss_pred EeccchhhhhheeeEEeccCCCC-CeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhhhhHHHhhhhheeeEEEEEE
Q psy16242 115 IIIPCMGISFLTVLTFYLPSDSG-EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVL 193 (383)
Q Consensus 115 liiP~~li~~Ls~~~F~lp~~s~-eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f~~~~~~~v~~sli~tv~v~ 193 (383)
+|+||++|++++|++||+|+++| ||++||+|+||++++|+..+++.||++|+.+|++++|+.++++++++++..+++++
T Consensus 1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~avv~~ 80 (237)
T PF02932_consen 1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEFAVVVY 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHhhhhhh
Confidence 47999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCCCCCCCCCCCCCCCC--ccccCC---CcccccccccccCCC
Q psy16242 194 NVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIGGSGGS--CKIHGH---VSLSNILTEAILSSS 268 (383)
Q Consensus 194 ~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~ 268 (383)
++|+|++..+++|+|+|+++++++|++++++++..................... ...... ...... ........
T Consensus 81 ~~~~~~~~~~~~~~~~r~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (237)
T PF02932_consen 81 NIHHRGPRTRPMPPWVRRLFLEKLARLLCMKRPSEKERKPASSQESRSRSSSSSRKESETDKDPSQSQSSS-NSSSSSQN 159 (237)
T ss_dssp HHHHHSTTT-S---------------------------------------------------------------------
T ss_pred hhcccccccccccchhHHHHhhhhhhhhhhccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 999999888999999999999999999999998765443211100000000000 000000 000000 00000000
Q ss_pred -CC-CCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16242 269 -PQ-DDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGT 346 (383)
Q Consensus 269 -~~-~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~EWk~vA~VlDRlfL~iF~l~~~v~T 346 (383)
.. ...................++++.+++++|++++++++++++ .++||+++|+||||+|+|+|.+++++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~------~~~ew~~~A~viDR~~~~~F~i~f~~~~ 233 (237)
T PF02932_consen 160 SPNSRSSSSSSSNSSSEQSLSPSLRRILEGVRFIAEHLREQDEEEE------IKEEWKFVAMVIDRLFRILFPIAFILFN 233 (237)
T ss_dssp ------------SS---TTGGG----HHHHHHHHHHHHHHHHHHHH------HHHHHHSTSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccHHHhhhhcccceeeccccccccccc------ccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 00 000000000111122346788899999999999999999999 9999999999999999999999999999
Q ss_pred Hhhh
Q psy16242 347 AGII 350 (383)
Q Consensus 347 ~~i~ 350 (383)
++++
T Consensus 234 i~yw 237 (237)
T PF02932_consen 234 IVYW 237 (237)
T ss_dssp HHHH
T ss_pred hhhC
Confidence 8863
No 5
>KOG3643|consensus
Probab=99.97 E-value=3.2e-33 Score=271.86 Aligned_cols=169 Identities=17% Similarity=0.278 Sum_probs=150.4
Q ss_pred CCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccc-cccccccccccceEEecccCeEEeeeeeccCCCCc
Q psy16242 17 HPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRER-VGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPY 95 (383)
Q Consensus 17 ~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~-~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~~y 95 (383)
+|+++||||+|+|+| +++||+|+.++|.+.|..+++.+.. ..+.+ +++.+.+.........+. ++.|
T Consensus 162 MDL~~fPmD~Q~C~L----eiESYGYt~~DI~y~W~~g~~av~~~e~i~L------pqFti~~~~~~s~~~~~s--TG~Y 229 (459)
T KOG3643|consen 162 MDLKLFPMDSQNCKL----EIESYGYTTDDIEYYWSKGDNAVKGDEKIEL------PQFTITEYHVTSRLVSFS--TGNY 229 (459)
T ss_pred cccccCCCcccceeE----EEEecccccccEEEEEcCCCccccceeeeec------cceEEEEEEEEEEEEEEc--cccc
Confidence 488999999999999 9999999999999999866543322 22444 455577776666665554 7899
Q ss_pred ceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCC-CCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhh
Q psy16242 96 LDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDS-GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKY 174 (383)
Q Consensus 96 ~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s-~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f 174 (383)
+++...|.++|+.+||++++++|+.|++++||++||+..|+ ++|+.+|||++|+||+++...++.||++| |+++||+|
T Consensus 230 ~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvS-YVKAiDiY 308 (459)
T KOG3643|consen 230 SRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVS-YVKAIDVY 308 (459)
T ss_pred eeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCcc-ceeeehhh
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999 89999999
Q ss_pred hhHHHhhhhheeeEEEEEEeeccc
Q psy16242 175 LIFAMILVSISICVTVVVLNVHFR 198 (383)
Q Consensus 175 ~~~~~~~v~~sli~tv~v~~l~~r 198 (383)
+.+|+++||+|++|.++|.++..+
T Consensus 309 L~vCFvfVF~sLLEYA~V~Y~~~~ 332 (459)
T KOG3643|consen 309 LGVCFVFVFLSLLEYAAVNYMFKR 332 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888763
No 6
>KOG3644|consensus
Probab=99.96 E-value=1.7e-30 Score=261.77 Aligned_cols=170 Identities=16% Similarity=0.213 Sum_probs=150.8
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCCCCc
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPY 95 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~~y 95 (383)
..|+++||+|+|+|.+ .++||+|+.+++.+.|...++.....++ ..+++++.+.........|. .|.|
T Consensus 171 ~m~L~~fP~D~Q~C~l----~~eSy~Yn~~~v~~~W~~~~pv~~~~~i------~LPdf~l~~~~~~~~~~~y~--~G~~ 238 (457)
T KOG3644|consen 171 NMDLSKFPMDSQECKL----QLESYAYNTDDVRLEWKEWNPVQVKKDI------KLPDFSLPSFSTEKCTGSYT--TGVY 238 (457)
T ss_pred eeehhhCCCccceeeE----EEEEeccccceEEEEecCCCCcccccCc------cCCceeccceeecccccccc--Ccce
Confidence 3488999999999999 9999999999999999865432223333 34566677776665555665 7889
Q ss_pred ceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCC-CCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhh
Q psy16242 96 LDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDS-GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKY 174 (383)
Q Consensus 96 ~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s-~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f 174 (383)
+++.++|+++|+.+||+++.++|+.+++++||++|||++++ ++|++||+|+||++++....+..+||++| |+++||+|
T Consensus 239 scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLLtLttq~~~i~~~LP~VS-YvKAIDVW 317 (457)
T KOG3644|consen 239 SCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLLTLTTQSGGIRRNLPKVS-YVKAIDVW 317 (457)
T ss_pred EEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHHHHHHHhcchhhcCCchh-hHHHHHHH
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999 79999999
Q ss_pred hhHHHhhhhheeeEEEEEEeeccc
Q psy16242 175 LIFAMILVSISICVTVVVLNVHFR 198 (383)
Q Consensus 175 ~~~~~~~v~~sli~tv~v~~l~~r 198 (383)
+++|++++|+|++|.++|..+.+|
T Consensus 318 m~~C~~FIF~sLlE~A~V~~~~~~ 341 (457)
T KOG3644|consen 318 MGVCMTFIFGSLLELAVVNYVGRR 341 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999888775
No 7
>KOG3642|consensus
Probab=99.94 E-value=1.8e-28 Score=240.10 Aligned_cols=179 Identities=16% Similarity=0.290 Sum_probs=154.1
Q ss_pred cccccCCcceeecCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEE
Q psy16242 4 MRSCVPAKDEHHHHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVR 83 (383)
Q Consensus 4 ~~~~~p~~~~~~~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~ 83 (383)
||-=++|.|- ..+.+||||.|.|++ +||||+|..+|+.+.|... ...++.+......++++++.....
T Consensus 160 ~RlTi~A~C~---m~l~~fPMD~haCpl----~fgSy~Y~~~evvY~W~~~-----~VeV~~~~~~~L~Qf~l~g~~~~t 227 (466)
T KOG3642|consen 160 MRLTIPAECP---MHLARFPMDSHACPL----KFGSYAYPGSEVVYKWKKR-----SVEVNETDSWSLDQFDLLGVSVGT 227 (466)
T ss_pred EEEeecccCc---chhhcCCCCcccCcc----eecccCcCCCCEEEEEecc-----cEEEcCCCCccccceeeecccccc
Confidence 3444556543 578899999999999 9999999999999999754 123333344456788899887765
Q ss_pred eeeeeccCCCCcceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCC-CCeEEehhhHHHHHHHHHHHHHhhCC
Q psy16242 84 NEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDS-GEKVTLSISILISLHVFFLLVVEIIP 162 (383)
Q Consensus 84 ~~~~y~~~~~~y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s-~eRv~l~it~lLs~~vfl~~v~~~lP 162 (383)
+... -.+++|+.++..|+++|+.+||+++.++||+|+++|+|++||+..++ ++|.+||||++|+|++.......++|
T Consensus 228 e~i~--t~~gey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVLTMTtLs~~aR~slP 305 (466)
T KOG3642|consen 228 EDIK--TSSGEYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVLTMTTLSTSARKSLP 305 (466)
T ss_pred cceE--ecCCCEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeeeeeeeeeehhccCCC
Confidence 5443 23678999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred CCccccccchhhhhHHHhhhhheeeEEEEEEeecc
Q psy16242 163 PTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHF 197 (383)
Q Consensus 163 ~tS~~iP~i~~f~~~~~~~v~~sli~tv~v~~l~~ 197 (383)
++| |.+++|+|+.+|+++++.+++|...+.++..
T Consensus 306 KVs-y~TAmD~fIavCf~FvFsaliEfa~vNYft~ 339 (466)
T KOG3642|consen 306 KVS-YATALDVFIAVCFIFVFAALVEFAVVNYFTL 339 (466)
T ss_pred ccc-cchhHHHHHHHHHHHHHHHHHHHHheeeeee
Confidence 999 7999999999999999999999999877764
No 8
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=99.35 E-value=3.3e-12 Score=117.63 Aligned_cols=87 Identities=28% Similarity=0.479 Sum_probs=75.3
Q ss_pred CcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCC-CccccccccccccccceEEecccCeEEeeeeeccCCCC-c
Q psy16242 18 PESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPH-RRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEP-Y 95 (383)
Q Consensus 18 ~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~-~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~~-y 95 (383)
++++||||+|+|++ .|+||+|+..++.+.+..... .......+++.+..++||++.++........+.||++. |
T Consensus 129 d~~~fPfD~q~C~i----~~~s~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ew~~~~~~~~~~~~~~~~~~~~~y 204 (217)
T PF02931_consen 129 DLRDFPFDSQNCSI----KFGSWSYNSEEVQLKWENKNPPIDENDEVSLSDFVSNSEWKIVSVTSTRRETTYGCYNEPTY 204 (217)
T ss_dssp TTTSSSSSEEEEEE----EEEESSSSTTTEEEEESCSSS-TTSSTTTSCTTCETTSSEEEEEEEEEEEEEEESTSSSCSE
T ss_pred cccccccccceeEE----EEecccccccceeeeecccCceeeeeccccHHHccccceEEEEeeEEEEEEEccCCcCCCCE
Confidence 77899999999999 999999999999999875321 22235678889999999999999888888878888887 9
Q ss_pred ceEEEEEEeeecc
Q psy16242 96 LDITFNITMRRKT 108 (383)
Q Consensus 96 ~~i~~~~~lrR~~ 108 (383)
+.+.|+|+++|||
T Consensus 205 s~l~~~~~l~R~~ 217 (217)
T PF02931_consen 205 SMLSFTFTLKRRP 217 (217)
T ss_dssp EEEEEEEEEEEST
T ss_pred eeEEEEEEEEECc
Confidence 9999999999996
No 9
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=87.74 E-value=0.22 Score=47.37 Aligned_cols=91 Identities=14% Similarity=0.258 Sum_probs=47.6
Q ss_pred ceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCC---CCeEEehhhHHHHHHHH-HHHHHhhCCCCccccccc
Q psy16242 96 LDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDS---GEKVTLSISILISLHVF-FLLVVEIIPPTSLVVPLL 171 (383)
Q Consensus 96 ~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s---~eRv~l~it~lLs~~vf-l~~v~~~lP~tS~~iP~i 171 (383)
....+.++++|...--.+-+++ ++++..|+.++++.-... ..++.......++-+.| +--+++.+|-.+-.=-.|
T Consensus 152 ~~~~~~i~l~Rs~~~~~F~~~i-~~vm~~L~~~al~~ai~~~~~rr~~~~~~l~w~aA~LFAlp~lRN~lPGaPP~G~~i 230 (256)
T PF14494_consen 152 GGDGVDITLKRSRGVLFFALFI-CLVMWALATLALFVAIQVLRRRRKFEPPMLTWMAAMLFALPPLRNILPGAPPIGSWI 230 (256)
T ss_pred CceeEEEEEEccCcceehHHHH-HHHHHHHHHHHHHHHHHHHhCccccccchHHHHHHHHHhhhhHhccCCCCCCCcceE
Confidence 4567888898887765553333 334444555555554432 34455555554444444 445788888755222233
Q ss_pred hhh-hhHHHhhhhheee
Q psy16242 172 GKY-LIFAMILVSISIC 187 (383)
Q Consensus 172 ~~f-~~~~~~~v~~sli 187 (383)
|.+ ++.+++++.+|++
T Consensus 231 D~~~vlW~~i~l~~~m~ 247 (256)
T PF14494_consen 231 DFAGVLWVLIALVASMV 247 (256)
T ss_pred eeeehHHHHHHHHHHHH
Confidence 331 3334444444443
No 10
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=43.57 E-value=48 Score=28.08 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=25.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHhh
Q psy16242 316 LIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGI 349 (383)
Q Consensus 316 ~~~~~~EWk~vA~VlDRlfL~iF~l~~~v~T~~i 349 (383)
....+.|.++...+.||- +++|+++...|++..
T Consensus 23 Irq~~rd~~y~~R~~~~Y-~~LfiVFl~AG~vLw 55 (141)
T PRK13743 23 IRQTKRDYDYERRVSDIY-FDLFIVFLTAGIVLW 55 (141)
T ss_pred HHhhhhhHHHHHHHHHHH-HHHHHHHHHhhHHHH
Confidence 344888999999999985 578888877777653
No 11
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=42.01 E-value=15 Score=29.71 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhHhhhhcCCccccCCCccchh
Q psy16242 332 RLFLWIFTLAVLGGTAGIILQAPSLYDDRVPIDSK 366 (383)
Q Consensus 332 RlfL~iF~l~~~v~T~~i~~~~p~~~~~~~~~~~~ 366 (383)
|.-+|-|+++.++-.++++...|++|...+-+...
T Consensus 3 ~yp~WKyllil~vl~~~~lyALPnlyge~pAvqIs 37 (101)
T PF13721_consen 3 RYPLWKYLLILVVLLLGALYALPNLYGEDPAVQIS 37 (101)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhccCCCCcEEEe
Confidence 45567777776666777888889999888755443
No 12
>PRK14762 membrane protein; Provisional
Probab=27.38 E-value=61 Score=19.35 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhhHhhh
Q psy16242 332 RLFLWIFTLAVLGGTAGII 350 (383)
Q Consensus 332 RlfL~iF~l~~~v~T~~i~ 350 (383)
|+.+|+-.+..++|.+++.
T Consensus 2 ki~lw~i~iifligllvvt 20 (27)
T PRK14762 2 KIILWAVLIIFLIGLLVVT 20 (27)
T ss_pred eeHHHHHHHHHHHHHHHHH
Confidence 4567777777766666553
No 13
>KOG4647|consensus
Probab=20.90 E-value=1.3e+02 Score=28.01 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=25.6
Q ss_pred hhhhHH-HHHHHHHHHHHHHHHHHHHhhhHhhh
Q psy16242 319 VKEDWK-YVALVLDRLFLWIFTLAVLGGTAGII 350 (383)
Q Consensus 319 ~~~EWk-~vA~VlDRlfL~iF~l~~~v~T~~i~ 350 (383)
+..-|| ++|..+|-++|+.|=++++.||+-++
T Consensus 91 ~~sf~~R~~AE~IDffilf~~K~~Iv~g~~~l~ 123 (263)
T KOG4647|consen 91 AASFLRRLLAELIDFFILFSFKLAIVGGTLSLL 123 (263)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 444564 68999999999999999888887765
Done!