Query psy16242
Match_columns 383
No_of_seqs 226 out of 1764
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 16:26:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aq5_E Acetylcholine receptor 100.0 5.8E-66 2E-70 528.2 -2.9 338 16-364 128-480 (488)
2 4aq5_C Acetylcholine receptor 100.0 5.3E-66 1.8E-70 532.2 -5.8 337 16-364 152-508 (522)
3 4aq5_A Acetylcholine receptor 100.0 3.2E-65 1.1E-69 519.1 -5.0 299 16-355 153-455 (461)
4 4aq5_B Acetylcholine receptor 100.0 1.1E-64 3.8E-69 519.3 -2.6 327 16-362 153-491 (493)
5 2bg9_B Acetylcholine receptor 100.0 1.2E-54 4E-59 431.0 -1.5 241 16-363 129-369 (370)
6 2bg9_C Acetylcholine receptor 100.0 4.9E-54 1.7E-58 426.4 -2.0 237 16-360 131-368 (369)
7 2bg9_E Acetylcholine receptor 100.0 1.2E-53 4.1E-58 423.8 -3.7 240 16-359 128-369 (370)
8 2bg9_A Acetylcholine receptor 100.0 3.8E-52 1.3E-56 413.0 -3.3 232 16-352 129-361 (370)
9 1oed_B Acetylcholine receptor 100.0 1.3E-51 4.6E-56 385.8 -12.2 243 108-360 1-249 (250)
10 1oed_C Acetylcholine receptor 100.0 5.2E-51 1.8E-55 383.9 -15.0 246 108-360 1-259 (260)
11 1oed_E Acetylcholine receptor 100.0 8.8E-51 3E-55 382.3 -14.0 246 108-359 1-258 (260)
12 1oed_A Acetylcholine receptor 100.0 3.7E-49 1.3E-53 364.3 -12.7 215 108-352 1-218 (227)
13 3rqw_A ELIC pentameric ligand 100.0 5.5E-43 1.9E-47 341.0 -6.6 193 16-221 113-312 (322)
14 3tlw_A GLR4197 protein, GLIC; 100.0 5.3E-42 1.8E-46 333.9 -6.8 187 16-215 117-305 (321)
15 3rhw_A Avermectin-sensitive gl 100.0 2E-40 6.7E-45 326.2 -7.7 196 16-224 131-330 (347)
16 2ksr_A Neuronal acetylcholine 100.0 2.2E-38 7.7E-43 277.9 -6.8 118 87-204 7-124 (164)
17 2lly_A Neuronal acetylcholine 100.0 1.4E-32 4.9E-37 234.7 -5.1 99 103-201 2-100 (137)
18 2lkg_A Acetylcholine receptor; 99.9 8.9E-32 3E-36 230.0 -20.1 118 82-199 15-140 (140)
19 4aoe_A Acetylcholine-binding p 99.7 1.5E-18 5.1E-23 158.0 7.2 77 17-106 128-204 (205)
20 3igq_A GLR4197 protein; plgic 99.7 4.4E-18 1.5E-22 154.5 7.2 85 16-111 113-197 (201)
21 4aod_A Acetylcholine-binding p 99.7 3.9E-18 1.3E-22 155.3 6.6 87 7-106 116-204 (205)
22 2qc1_B Acetylcholine receptor 99.7 4.2E-17 1.4E-21 149.2 9.1 82 16-108 130-212 (212)
23 2wn9_A Soluble acetylcholine r 99.7 1.2E-16 4.2E-21 147.7 9.0 82 25-117 145-226 (228)
24 3sq6_A ACHBP, neuronal acetylc 99.7 1.2E-16 4.2E-21 145.3 8.3 78 16-107 126-203 (204)
25 4afh_A ACHBP; acetylcholine-bi 99.6 1.2E-16 4.1E-21 147.9 6.4 82 23-115 140-221 (230)
26 1uw6_A Acetylcholine-binding p 99.6 2E-15 6.8E-20 137.9 8.2 78 25-113 133-211 (211)
27 2bj0_A Acetylcholine-binding p 99.5 1.7E-14 5.7E-19 131.0 8.4 78 18-107 126-203 (203)
28 1vry_A Glycine receptor alpha- 98.9 9.3E-12 3.2E-16 94.1 -8.1 62 137-199 2-63 (76)
29 1mot_A Glycine receptor alpha- 84.1 0.015 5.1E-07 34.9 -5.1 27 137-163 2-28 (28)
No 1
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=100.00 E-value=5.8e-66 Score=528.23 Aligned_cols=338 Identities=29% Similarity=0.448 Sum_probs=226.3
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCC-CccccccccccccccceEEecccCeEEeeeeeccC-CC
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPH-RRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCC-DE 93 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~-~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~-~~ 93 (383)
..|+++||||+|+|+| +|+||+|+.+++++.|..++. ......+|.++|..+|||++.+.+++++...+.|| ++
T Consensus 128 ~mdl~~FPfD~Q~C~l----~f~S~~y~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ 203 (488)
T 4aq5_E 128 PIAVTYFPFDWQNCSL----VFRSQTYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDI 203 (488)
T ss_dssp CCSSSSSSSSCCCCCE----EEEESSSCSSSCCEECCCSCC-------CGGGSCCTTCSEEEEECCCEEECCCCTTCCCS
T ss_pred ccccccCCCcCceeeE----EeeeeccccceEEEEeccCCCcceeeeeccHHHccccceEEEEeeEEEEEEeeeccCCCC
Confidence 4488999999999999 999999999999999875432 11223468889999999999999988776644455 45
Q ss_pred CcceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCC-CCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccch
Q psy16242 94 PYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSD-SGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLG 172 (383)
Q Consensus 94 ~y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~-s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~ 172 (383)
.|++++|+|++||+++||++++++||+++++|+|++||||++ +|||++||+|+||++++|++.+++.+|++|+.+|+||
T Consensus 204 ~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~~v~~~LP~tS~~vPlI~ 283 (488)
T 4aq5_E 204 DFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIG 283 (488)
T ss_dssp CCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred CcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHHHHHhhCCccccCccHHH
Confidence 799999999999999999999999999999999999999999 7999999999999999999999999999997799999
Q ss_pred hhhhHHHhhhhheeeEEEEEEeecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCCCCCCCCCC--CCCCCC---
Q psy16242 173 KYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLI--GGSGGS--- 247 (383)
Q Consensus 173 ~f~~~~~~~v~~sli~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~--~~~~~~--- 247 (383)
+|+++||+++++|++++++|+|+|||++.+|+||+|+|++|++++|++|||++|..+........++.. +.....
T Consensus 284 ~y~~~~m~lv~~Sll~tv~Vlnl~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (488)
T 4aq5_E 284 KYLIFVMFVSLVIVTNCVIVLNVSLRTPNTHSLSEKIKHLFLEFLPKYLGMHLEPSEETPEKPQPRRRSSFGIMIKAEEY 363 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSTTTCC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhEEEEEccCCCCCcCChhHhhhhHhhCcceeEecCCcccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999654211110000000 000000
Q ss_pred --ccccCCC---cccccccccccCC--CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhh
Q psy16242 248 --CKIHGHV---SLSNILTEAILSS--SPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVK 320 (383)
Q Consensus 248 --~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~ 320 (383)
.+..... ...+. .+..... ....................++++++++++++|++|+++||++++ ++
T Consensus 364 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ia~~~~~~~~~~~------~~ 436 (488)
T 4aq5_E 364 ILKKPRSELMFEEQKDR-HGLKRVNKMTSDIDIGTTVDLYKDLANFAPEIKSCVEACNFIAKSTKEQNDSGS------EN 436 (488)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHHH------HH
T ss_pred cccCCcccccccccccc-CcccccccccCccccCCCccccccccccCHHHHHHHHHHHHHHHHHhhhhHHhh------hh
Confidence 0000000 00000 0000000 000000000000001112356899999999999999999999999 99
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcCCccccCCCccc
Q psy16242 321 EDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYDDRVPID 364 (383)
Q Consensus 321 ~EWk~vA~VlDRlfL~iF~l~~~v~T~~i~~~~p~~~~~~~~~~ 364 (383)
+|||+||||+||+|||+|++++++||++||++++..+.+++|.+
T Consensus 437 ~dWk~va~V~DR~~l~~f~~~~~~gt~~i~~~~~~~~~~~~p~~ 480 (488)
T 4aq5_E 437 ENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHLNQVPEFPFP 480 (488)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred hcceEEEeeHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Confidence 99999999999999999999999999999999988777666654
No 2
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=100.00 E-value=5.3e-66 Score=532.16 Aligned_cols=337 Identities=28% Similarity=0.426 Sum_probs=225.8
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCC-----CccccccccccccccceEEecccCeEEeeeeecc
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPH-----RRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTC 90 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~-----~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~ 90 (383)
..|+++||||+|+|+| +|+||+|+.+++++.|..++. ......+|.++|..||||++.+.+++++...+.|
T Consensus 152 ~mdl~~FPfD~Q~C~L----~f~S~~Y~~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~gEW~l~~~~~~~~~~~~~~ 227 (522)
T 4aq5_C 152 PINVLYFPFDWQNCSL----KFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDKF 227 (522)
T ss_dssp CCTTTSCSTTCCEEEE----EEEETTCCTTTCCEEC---------------CCSTTSCCTTCSEEEEECCEEEEECCCSS
T ss_pred ccccCcCCCcCceEeE----EEecccccCceeEEEeccCcccccCccceeeeccHHHceecceEEEeeeEEEEEeeeccc
Confidence 3488999999999999 999999999999999865421 1112236888999999999999998877664444
Q ss_pred C-CCCcceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccc
Q psy16242 91 C-DEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVP 169 (383)
Q Consensus 91 ~-~~~y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP 169 (383)
| ++.|++++|+|++||+++||++++++||+++++|+|++||||+++|||+++|+|+||++++|++.+++.+|++|+.+|
T Consensus 228 ~~~~~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d~~eRisLgIT~LLt~tvfl~~v~~~LP~tS~~vP 307 (522)
T 4aq5_C 228 PNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAVP 307 (522)
T ss_dssp CSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cCCCCcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCCcCceEEehHHHHHHHHHHHHHHHhcCCcccCCcc
Confidence 4 457999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred cchhhhhHHHhhhhheeeEEEEEEeecccCCCCCCCCcchhhhhcccccceeeec-CCCCCCCCCC--CCCCCCCCCCCC
Q psy16242 170 LLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMR-RPLYNPDGSH--LADGPLIGGSGG 246 (383)
Q Consensus 170 ~i~~f~~~~~~~v~~sli~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~-~p~~~~~~~~--~~~~~~~~~~~~ 246 (383)
+||+|+++||+++++|++++++|+|+|||++.+|+||+|+|++|++++|++|||+ +|..+..... ...++... .+
T Consensus 308 lI~~y~~~~m~lv~lSll~tviVlnl~~r~~~~~~mp~wvr~~fl~~l~~~l~m~~~p~~~~~~~~~~~~~~~~~~-~~- 385 (522)
T 4aq5_C 308 LIGKYLMFIMSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRVDEIEQPDWQNDLKLRRSSS-VG- 385 (522)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHheEEEEEccCCCCCCCChHHHHHHHHhCchheEEecCCCccccccccccccccccc-cc-
Confidence 9999999999999999999999999999999999999999999999999999999 9865411110 00000000 00
Q ss_pred CccccCCC----cccc----c---ccccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcccccccccc
Q psy16242 247 SCKIHGHV----SLSN----I---LTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKEST 315 (383)
Q Consensus 247 ~~~~~~~~----~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~ 315 (383)
.....++. ..++ + ..+.........................++++++++++++|++|+++||++++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ia~~~~~~~~~~~--- 462 (522)
T 4aq5_C 386 YISKAQEYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNNENIAASDQLHDEIKSGIDSTNYIVKQIKEKNAYDE--- 462 (522)
T ss_dssp --------------------------------------------------------CCTTTTTHHHHHHHHHHHHHH---
T ss_pred cccccccccccCCccccccccccccCcccccccCccccCCcccccccccccCHHHHHHHHHHHHHHHHHhhhhhhhh---
Confidence 00000000 0000 0 00000000000000000000001112346788999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcCCccccCCCccc
Q psy16242 316 LIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYDDRVPID 364 (383)
Q Consensus 316 ~~~~~~EWk~vA~VlDRlfL~iF~l~~~v~T~~i~~~~p~~~~~~~~~~ 364 (383)
+++|||+||||+||+|||+|++++++||++||++++..+.+++|.+
T Consensus 463 ---~~~dWk~va~V~DRl~l~~f~~~~~~gt~~i~~~~~~~~~~~~p~~ 508 (522)
T 4aq5_C 463 ---EVGNWNLVGQTIDRLSMFIITPVMVLGTIFIFVMGNFNRPPAKPFE 508 (522)
T ss_dssp ---HHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCC---
T ss_pred ---hccceeEeeeeHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Confidence 9999999999999999999999999999999999998887777665
No 3
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=100.00 E-value=3.2e-65 Score=519.12 Aligned_cols=299 Identities=39% Similarity=0.707 Sum_probs=225.7
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCCC-C
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDE-P 94 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~-~ 94 (383)
..|+++||||+|+|++ +|+||+|+.+++++.+. ..++++++|..+|||++.+.+..++...|.||++ +
T Consensus 153 ~mdl~~FPfD~Q~C~l----~f~S~~y~~~~v~l~~~-------~~~~~l~~~~~~~eW~l~~~~~~~~~~~y~~~~~~~ 221 (461)
T 4aq5_A 153 EIIVTHFPFDQQNCTM----KLGIWTYDGTKVSISPE-------SDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTP 221 (461)
T ss_dssp CCCGGGSSSSCEEEEE----EEEESSCCTTTEEEECC-------CCCCSGGGCCTTCSSEEEEEEEEEEECCCSSSSSCC
T ss_pred cccccCCCCccCccCe----EEeccccCCceEEEEec-------cccccHHhhhccCceEEeeeeeEEEEEeecCcCCCC
Confidence 4488999999999999 99999999999999974 4567889999999999999999988888999988 9
Q ss_pred cceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhh
Q psy16242 95 YLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKY 174 (383)
Q Consensus 95 y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f 174 (383)
|++++|+|++||+++||++++++||+++++++|++||+|++++||+++|+|+||++++|+..+++.+|++|+++|+||+|
T Consensus 222 y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vplI~~y 301 (461)
T 4aq5_A 222 YLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKY 301 (461)
T ss_dssp CEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGG
T ss_pred cceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccccceeehhHHHHHHHHHHHHHHHhhcCcccCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred hhHHHhhhhheeeEEEEEEeecccCCCCCCCCcchhhhhcccccceee---ecCCCCCCCCCCCCCCCCCCCCCCCcccc
Q psy16242 175 LIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILV---MRRPLYNPDGSHLADGPLIGGSGGSCKIH 251 (383)
Q Consensus 175 ~~~~~~~v~~sli~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (383)
+.+||+++++|++++++|+|+|||++.+|+||+|+|++|++++|++|| |++|+.+.+..+. .+ +. .+.+
T Consensus 302 ~~~~m~~v~~sll~tv~Vl~l~~r~~~~~~mp~w~r~~~l~~l~~~l~~~~~~~p~~~~~~~~~--~~----~~--~~~~ 373 (461)
T 4aq5_A 302 MLFTMIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTMKRASKEKQENKI--FA----DD--IDIS 373 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTTC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhheeeeccCCCCCCCCHHHHHHHHHhhHHHhhhhhcCCCCcccccccC--Cc----cc--cCcc
Confidence 999999999999999999999999999999999999999999999999 9998653221100 00 00 0000
Q ss_pred CCCcccccccccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhhHHHHHHHHH
Q psy16242 252 GHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLD 331 (383)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~EWk~vA~VlD 331 (383)
. ..+. ... .. ... ... ....++++++++++++|++|+++||++++ .++|||+||+|+|
T Consensus 374 ~---~~~~---~~~----~~-~~~-~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~dWk~va~v~D 431 (461)
T 4aq5_A 374 D---ISGK---QVT----GE-VIF-QTP----LIKNPDVKSAIEGVKYIAEHMKSDEESSN------AAEEWKYVAMVID 431 (461)
T ss_dssp ----------------------------------------CCHHHHHHHHHHHHHHHHHHH------HHHHTTSCSSSHH
T ss_pred c---ccCC---CCC----Cc-ccc-ccc----cccCHHHHHHHHHHHHHHHHHHhhHHHHh------hhhhheeeeeeHH
Confidence 0 0000 000 00 000 000 11246788999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHhhhHhhhhcCCc
Q psy16242 332 RLFLWIFTLAVLGGTAGIILQAPS 355 (383)
Q Consensus 332 RlfL~iF~l~~~v~T~~i~~~~p~ 355 (383)
|+|||+|++++++||++||++++.
T Consensus 432 r~~l~~f~~~~~~gt~~i~~~~~~ 455 (461)
T 4aq5_A 432 HILLCVFMLICIIGTVSVFAGRLI 455 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998653
No 4
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=100.00 E-value=1.1e-64 Score=519.32 Aligned_cols=327 Identities=32% Similarity=0.523 Sum_probs=226.8
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCC---ccccccccccccccceEEecccCeEEeeeeeccCC
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHR---RERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCD 92 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~---~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~ 92 (383)
..|+++||||+|+|++ +|+||+|+.+++++.|..+++. .....+|+++|..+|||++.+.++.++...|.|
T Consensus 153 ~mdl~~FPfD~Q~C~l----~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~l~~f~~~~eW~l~~~~~~~~~~~~~~-- 226 (493)
T 4aq5_B 153 TIKVMYFPFDWQNCTM----VFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRKNWRSDDP-- 226 (493)
T ss_dssp SCTTCSSSTTCCCCEE----EEECSSCCBTSCEEECCCCC---------CCSGGGCCTTCSSBCCCCCCEECCCTTSS--
T ss_pred cccccCCCccceeEEE----EEeeecCccccEEEEeccCCCCccceecccccHHHhccccceeeeeeeEEEEeecCCC--
Confidence 3488999999999999 9999999999999999654321 124557889999999999999999888776754
Q ss_pred CCcceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccch
Q psy16242 93 EPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLG 172 (383)
Q Consensus 93 ~~y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~ 172 (383)
+|++++|+|++||+++||++++++||+++++++|++||||+++|||+++|+|+||++++|+..+++.+|++|+.+|+||
T Consensus 227 -~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s~eRvsLgiT~LLt~tvfl~~v~~~LP~tS~~vPlI~ 305 (493)
T 4aq5_B 227 -SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETSLSVPIII 305 (493)
T ss_dssp -SBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTCGGGGTHHHHHHHHHHHHHHHHHHHTTTTTTSSCCCC
T ss_pred -CccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCCCceEEehHHHHHHHHHHHHHHHhcCCccccCCCchH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999997799999
Q ss_pred hhhhHHHhhhhheeeEEEEEEeecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCCCCCCC---CCCCC-CCCCc
Q psy16242 173 KYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADG---PLIGG-SGGSC 248 (383)
Q Consensus 173 ~f~~~~~~~v~~sli~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~---~~~~~-~~~~~ 248 (383)
+|+.+||+++++|++++++|+|+|||++.+++||+|+|++|++++|++|||++|+....+.....+ +..+. ...+.
T Consensus 306 ~y~~~~m~~v~lsll~tv~Vl~l~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (493)
T 4aq5_B 306 SYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTIISRANDEYFIRKPA 385 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTTTC-------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHhheeeeccCCCCCcCCHHHHHHHHHhCcceEEecCCcccccccccccccccccccccccCCC
Confidence 999999999999999999999999999999999999999999999999999999654321110000 00000 00000
Q ss_pred cc-cCCCcc----cccccccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhhH
Q psy16242 249 KI-HGHVSL----SNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDW 323 (383)
Q Consensus 249 ~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~EW 323 (383)
.. ..+... .+. .+... . ........... ....++++++++++++|++|+++||++++ +++||
T Consensus 386 ~~~~~~~~~~~~~~~~-~~~~~--~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~dW 452 (493)
T 4aq5_B 386 GDFVCPVDNARVAVQP-ERLFS--E---MKWHLNGLTQP-VTLPQDLKEAVEAIKYIAEQLESASEFDD------LKKDW 452 (493)
T ss_dssp ------------------------------------------------CCHHHHHHHHHHHHHHHHHHH------HHHHH
T ss_pred cccccccccccccccc-ccccc--c---ccccccCcccc-cccCHHHHHHHHHHHHHHHHHHhhhHhhh------hhcce
Confidence 00 000000 000 00000 0 00000000001 12346789999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhhhcCCccccCCCc
Q psy16242 324 KYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYDDRVP 362 (383)
Q Consensus 324 k~vA~VlDRlfL~iF~l~~~v~T~~i~~~~p~~~~~~~~ 362 (383)
|+||+|+||+|||+|++++++||++||+++|..+.+++|
T Consensus 453 k~va~V~DR~~l~~f~~~~~~gt~~i~~~~~~~~~~~~p 491 (493)
T 4aq5_B 453 QYVAMVADRLFLYIFITMCSIGTFSIFLDASHNVPPDNP 491 (493)
T ss_dssp HSCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSSSSTT
T ss_pred EEEEEehhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Confidence 999999999999999999999999999998876665544
No 5
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=1.2e-54 Score=431.00 Aligned_cols=241 Identities=39% Similarity=0.666 Sum_probs=222.7
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCCCCc
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPY 95 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~~y 95 (383)
..|+++||||+|+|++ +||||+|+.+++++.|.. ..++++++|..+|||++.+.++.++ |.||+++|
T Consensus 129 ~mdl~~FPfD~Q~C~l----~f~S~~y~~~~i~l~~~~------~~~~~~~~~~~~~eW~l~~~~~~~~---y~~~~~~y 195 (370)
T 2bg9_B 129 TIKVMYFPFDWQNCTM----VFKSYTYDTSEVILQHAL------DAMINQDAFTENGQWSIEHKPSRKN---WRSDDPSY 195 (370)
T ss_dssp CCTTCSSSTTCCCCEE----EEEESSCCBTSCEEECSC------CCCCSTTSCCTTCSSEECCCCEEEC---CCTTSSSB
T ss_pred cCcccCCCCCceeeeE----EEEeccccccEEEEEecc------CCccccccccccceEEEeccceEEe---ecCCCCCc
Confidence 4488999999999999 999999999999999831 3457888999999999999988776 88999999
Q ss_pred ceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhhh
Q psy16242 96 LDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 175 (383)
Q Consensus 96 ~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f~ 175 (383)
++++++|++||+++||++++++||+++++++|++||||++++||+++|+|++|++++|+..+++.+|++|+++|+||+|+
T Consensus 196 ~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~ 275 (370)
T 2bg9_B 196 EDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETSLSVPIIISYL 275 (370)
T ss_dssp CCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHH
T ss_pred cEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCCCCceEEEEehHHHHHHHHHHHHHhhCCCccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997799999999
Q ss_pred hHHHhhhhheeeEEEEEEeecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCCCCCCCCCCCCCCCCccccCCCc
Q psy16242 176 IFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIGGSGGSCKIHGHVS 255 (383)
Q Consensus 176 ~~~~~~v~~sli~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (383)
.+||+++++|++++++++|+|+|++.+++
T Consensus 276 ~~~~~~v~~sll~~v~v~~~~~r~~~~~~--------------------------------------------------- 304 (370)
T 2bg9_B 276 MFIMILVAFSVILSVVVLNLHHRSPNTHE--------------------------------------------------- 304 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTTCC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCc---------------------------------------------------
Confidence 99999999999999999999988655432
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhhHHHHHHHHHHHHH
Q psy16242 256 LSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFL 335 (383)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~EWk~vA~VlDRlfL 335 (383)
+.+++++|+++++++++.++ .++|||++|+|+||+||
T Consensus 305 -------------------------------------~~~~~~~i~~~~~~~~~~~~------~~~~W~~~a~v~Dr~~~ 341 (370)
T 2bg9_B 305 -------------------------------------AVEAIKYIAEQLESASEFDD------LKKDWQYVAMVADRLFL 341 (370)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHHH------HHHHHHSCSHHHHHHHH
T ss_pred -------------------------------------chhhHHHHHHHHHhhhHHhh------hHHHHHHHHHHHHHHHH
Confidence 23457788999998888888 99999999999999999
Q ss_pred HHHHHHHHhhhHhhhhcCCccccCCCcc
Q psy16242 336 WIFTLAVLGGTAGIILQAPSLYDDRVPI 363 (383)
Q Consensus 336 ~iF~l~~~v~T~~i~~~~p~~~~~~~~~ 363 (383)
|+|+++++++|++|+++||++++++.|+
T Consensus 342 ~~f~~~~~~~t~~i~~~~~~~~~~~~~~ 369 (370)
T 2bg9_B 342 YIFITMCSIGTFSIFLDASHNVPPDNPF 369 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSGGGCCC
T ss_pred HHHHHHHHHHHHHHHhcCcccCCCCCCC
Confidence 9999999999999999999999988876
No 6
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=4.9e-54 Score=426.36 Aligned_cols=237 Identities=33% Similarity=0.557 Sum_probs=219.9
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeee-eccCCCC
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKF-YTCCDEP 94 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~-y~~~~~~ 94 (383)
..|+++||||+|+|++ +||||+|+.+++++.| +.|+++|..++||++.+.++.++... |.||+++
T Consensus 131 ~mdl~~FPfD~Q~C~l----~f~S~~y~~~~i~l~~----------~~~~~~~~~~~ew~l~~~~~~~~~~~~y~~~~~~ 196 (369)
T 2bg9_C 131 PINVLYFPFDWQNCSL----KFTALNYNANEISMDL----------IIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTN 196 (369)
T ss_dssp SCGGGSSSTTCCEEEE----EEEESSCCTTTCEEEC----------CCGGGSCCTTSSEEEEECCEEEEECCCSSCSSCC
T ss_pred cCcccCCCCCceEeeE----EEEEecccCceEEEEE----------ecccccceeCCEEEEeeeeEEEEEEecCCCCCCC
Confidence 3488999999999999 9999999999999997 24677888999999999999888877 9999999
Q ss_pred cceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhh
Q psy16242 95 YLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKY 174 (383)
Q Consensus 95 y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f 174 (383)
|++++++|++||+++||++++++||+++++++|++||||+++|||+++|+|+||++++|+..+++.+|++|+++|+||+|
T Consensus 197 y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~ 276 (369)
T 2bg9_C 197 YQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKY 276 (369)
T ss_dssp CEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHH
T ss_pred ccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCCCCCeEEEEhHHHHHHHHHHHHHHHhCCCCccCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999779999999
Q ss_pred hhHHHhhhhheeeEEEEEEeecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q psy16242 175 LIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIGGSGGSCKIHGHV 254 (383)
Q Consensus 175 ~~~~~~~v~~sli~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (383)
+.+||+++++|++++++++|+|+|++.+++
T Consensus 277 ~~~~~~~v~~sll~~v~v~~~~~r~~~~~~-------------------------------------------------- 306 (369)
T 2bg9_C 277 LMFIMSLVTGVVVNCGIVLNFHFRTPSTHS-------------------------------------------------- 306 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTTTCC--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhheeeeeccCCCCCc--------------------------------------------------
Confidence 999999999999999999999998765543
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhhHHHHHHHHHHHH
Q psy16242 255 SLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLF 334 (383)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~EWk~vA~VlDRlf 334 (383)
+.+++++|++++++++++++ .++|||++|+|+||+|
T Consensus 307 --------------------------------------~~~~~~~i~~~~~~~~~~~~------~~~~W~~~a~vlDr~~ 342 (369)
T 2bg9_C 307 --------------------------------------GIDSTNYIVKQIKEKNAYDE------EVGNWNLVGQTIDRLS 342 (369)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHH------HHHHHHHCCTTHHHHH
T ss_pred --------------------------------------cccchhHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHH
Confidence 13456678889988888888 9999999999999999
Q ss_pred HHHHHHHHHhhhHhhhhcCCccccCC
Q psy16242 335 LWIFTLAVLGGTAGIILQAPSLYDDR 360 (383)
Q Consensus 335 L~iF~l~~~v~T~~i~~~~p~~~~~~ 360 (383)
||+|+++++++|++|+++||++++++
T Consensus 343 ~~~f~~~~~~~~~~i~~~~~~~~~~~ 368 (369)
T 2bg9_C 343 MFIITPVMVLGTIFIFVMGNFNRPPA 368 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 99999999999999999999998765
No 7
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=1.2e-53 Score=423.82 Aligned_cols=240 Identities=35% Similarity=0.607 Sum_probs=220.1
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeee-eccCCCC
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKF-YTCCDEP 94 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~-y~~~~~~ 94 (383)
..|+++||||+|+|++ +||||+|+.+++++.|... .++++++|..++||++.+.+..++... |.||+++
T Consensus 128 ~mdl~~FPfD~Q~C~l----~f~S~~y~~~~i~l~~~~~------~~~~~~~~~~~~eW~l~~~~~~~~~~~~y~~~~~~ 197 (370)
T 2bg9_E 128 PIAVTYFPFDWQNCSL----VFRSQTYNAHEVNLQLSAE------EGIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDID 197 (370)
T ss_dssp CCSSCSSSSSCCBCCE----EEEESSSCTTSCCEECCCS------CCCGGGSCCTTSSEEEEECCCCEECCCCTTCCCSC
T ss_pred cccccCCCCCeEEEEE----EEEeeccccceeEEEecCC------CcccHhhcccccEEEEecceeEEEEEecccCCCCC
Confidence 3488999999999999 9999999999999998632 157888999999999999998888776 8999999
Q ss_pred cceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCC-CCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchh
Q psy16242 95 YLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSD-SGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGK 173 (383)
Q Consensus 95 y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~-s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~ 173 (383)
|++++++|++||+++||++++++||+++++++|++||||++ +|||+++|+|+||++++|+..+++.||++|+.+|+||+
T Consensus 198 y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~ 277 (370)
T 2bg9_E 198 FQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGK 277 (370)
T ss_dssp CCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSH
T ss_pred CcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHHHHHHHHHhCCCccCCCChHHH
Confidence 99999999999999999999999999999999999999999 69999999999999999999999999999966999999
Q ss_pred hhhHHHhhhhheeeEEEEEEeecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCCCCCCCCCCCCCCCCccccCC
Q psy16242 174 YLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIGGSGGSCKIHGH 253 (383)
Q Consensus 174 f~~~~~~~v~~sli~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (383)
|+.+||+++++|++++++|+|+|+|++.+++
T Consensus 278 ~~~~~~~~v~~sll~~v~v~~~~~r~~~~~~------------------------------------------------- 308 (370)
T 2bg9_E 278 YLIFVMFVSLVIVTNCVIVLNVSLRTPNTHS------------------------------------------------- 308 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSTTTCC-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhheeeeccCCCCCc-------------------------------------------------
Confidence 9999999999999999999999988755442
Q ss_pred CcccccccccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhhHHHHHHHHHHH
Q psy16242 254 VSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRL 333 (383)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~EWk~vA~VlDRl 333 (383)
+.+++++|+++++++++.++ .++|||++|+|+||+
T Consensus 309 ---------------------------------------~~~~~~~i~~~~~~~~~~~~------~~~~W~~~a~vlDr~ 343 (370)
T 2bg9_E 309 ---------------------------------------CVEACNFIAKSTKEQNDSGS------ENENWVLIGKVIDKA 343 (370)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHHH------HHHHHHHCCHHHHHH
T ss_pred ---------------------------------------chhhhhhhHHHHHhhhHHHH------HHHHHHHHHHHHHHH
Confidence 23357788889988888888 999999999999999
Q ss_pred HHHHHHHHHHhhhHhhhhcCCccccC
Q psy16242 334 FLWIFTLAVLGGTAGIILQAPSLYDD 359 (383)
Q Consensus 334 fL~iF~l~~~v~T~~i~~~~p~~~~~ 359 (383)
|||+|+++++++|++||++||.++++
T Consensus 344 ~~~~f~~~~~~~t~~i~~~~~~~~~~ 369 (370)
T 2bg9_E 344 CFWIALLLFSLGTLAIFLTGHLNQVP 369 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhcCccccCC
Confidence 99999999999999999999987653
No 8
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=3.8e-52 Score=413.03 Aligned_cols=232 Identities=45% Similarity=0.797 Sum_probs=214.6
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCC-CC
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCD-EP 94 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~-~~ 94 (383)
..|+++||||+|+|++ +||||+|+.+++++.|. ...+++++|..++||++.+.+..++...|.||+ ++
T Consensus 129 ~mdl~~FPfD~Q~C~l----~f~S~~y~~~~v~l~~~-------~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~~ 197 (370)
T 2bg9_A 129 EIIVTHFPFDQQNCTM----KLGIWTYDGTKVSISPE-------SDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTP 197 (370)
T ss_dssp CCCTTSSSSSCEEEEE----EEEESSCCTTTEEEECC-------CCCCSTTSCCTTCSSEEEEEEEEEEECCCSSSSSCC
T ss_pred CCCcCCCCCCcceeeE----EEEEecccCcEEEEEec-------CCCcccccccccceEEEEcceEEEEEEecCCCCCCC
Confidence 4488999999999999 99999999999999985 345688899999999999999988888899998 68
Q ss_pred cceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhh
Q psy16242 95 YLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKY 174 (383)
Q Consensus 95 y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f 174 (383)
|++++++|++||+++||++++++||+++++++|++||+|+++|||+++|+|++|++++|+..+++.+|++|+++|+||+|
T Consensus 198 y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~ 277 (370)
T 2bg9_A 198 YLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKY 277 (370)
T ss_dssp CEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGG
T ss_pred eeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCCCCeEEEeHHHHHHHHHHHHHHHhhCCCCcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999679999999
Q ss_pred hhHHHhhhhheeeEEEEEEeecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q psy16242 175 LIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIGGSGGSCKIHGHV 254 (383)
Q Consensus 175 ~~~~~~~v~~sli~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (383)
+.+||+++++|++++++|+|+|+|++.+|
T Consensus 278 ~~~~~~~v~~sl~~~~~v~~~~~r~~~~~--------------------------------------------------- 306 (370)
T 2bg9_A 278 MLFTMIFVISSIIVTVVVINTHHRSPSTH--------------------------------------------------- 306 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTTTC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcccc---------------------------------------------------
Confidence 99999999999999999999999875543
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhhHHHHHHHHHHHH
Q psy16242 255 SLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLF 334 (383)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~EWk~vA~VlDRlf 334 (383)
++.+++++|+++++++++.++ .++|||++|+|+||+|
T Consensus 307 -------------------------------------~~~~~~~~i~~~~~~~~~~~~------~~~~W~~~a~vlDr~~ 343 (370)
T 2bg9_A 307 -------------------------------------SAIEGVKYIAEHMKSDEESSN------AAEEWKYVAMVIDHIL 343 (370)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHHHHHHH------HHHHTTSCSSSHHHHH
T ss_pred -------------------------------------hHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHH
Confidence 023457888899999998888 9999999999999999
Q ss_pred HHHHHHHHHhhhHhhhhc
Q psy16242 335 LWIFTLAVLGGTAGIILQ 352 (383)
Q Consensus 335 L~iF~l~~~v~T~~i~~~ 352 (383)
||+|.+++++||++||++
T Consensus 344 ~~~f~~~~~~~t~~i~~~ 361 (370)
T 2bg9_A 344 LCVFMLICIIGTVSVFAG 361 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999975
No 9
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=100.00 E-value=1.3e-51 Score=385.81 Aligned_cols=243 Identities=37% Similarity=0.617 Sum_probs=123.2
Q ss_pred cceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhhhhHHHhhhhheee
Q psy16242 108 TLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISIC 187 (383)
Q Consensus 108 ~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f~~~~~~~v~~sli 187 (383)
|+||++|+++||+++++|+|++||||+|+|||+++|+|++|++++|+..+++.+|++|+++|+||+|+.+||+++++|++
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~dsgerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl~ 80 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVI 80 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCCCCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred EEEEEEeecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCC-CCCCCCCCCCC---CCCccccCCCccccccccc
Q psy16242 188 VTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGS-HLADGPLIGGS---GGSCKIHGHVSLSNILTEA 263 (383)
Q Consensus 188 ~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 263 (383)
++++|+|+|||++.+|+||+|+|++|++++|++|||++|+++.... .....+..... ........ ....+. ...
T Consensus 81 ~tv~Vln~~~r~~~~~~mp~wvr~~~l~~l~~~l~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~ 158 (250)
T 1oed_B 81 LSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTIISRANDEYFIRKPAGDFV-CPVDNA-RVA 158 (250)
T ss_dssp HHHHHHHHHHTC--------------------------------------------------------------------
T ss_pred HHhheeeeeccCCCCCCcchHHHHHHHHhhhHHhEecCCCccccccccccccccccchhcccCCccccC-CCCCcc-ccc
Confidence 9999999999999999999999999999999999999997632211 10000000000 00000000 000000 000
Q ss_pred ccCCCCCCCCCCCCCCCCCC--CCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy16242 264 ILSSSPQDDSKHLRPPAFSH--AQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLA 341 (383)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~EWk~vA~VlDRlfL~iF~l~ 341 (383)
.........+. ....... ....++++++++++++|++|+++||++++ +++|||+||||+||+|||+|+++
T Consensus 159 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~v~~Ia~~~~~~d~~~~------~~~dWk~vAmVlDRlfL~iF~i~ 230 (250)
T 1oed_B 159 VQPERLFSEMK--WHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESASEFDD------LKKDWQYVAMVADRLFLYVFFVI 230 (250)
T ss_dssp -----------------------------------------------------------------CHHHHHHHHHHHHHH
T ss_pred cccCCCCcccc--ccccccccccccCHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000 0000000 12345789999999999999999999999 99999999999999999999999
Q ss_pred HHhhhHhhhhcCCccccCC
Q psy16242 342 VLGGTAGIILQAPSLYDDR 360 (383)
Q Consensus 342 ~~v~T~~i~~~~p~~~~~~ 360 (383)
+++||++||++||+++++.
T Consensus 231 ~i~gT~~I~l~ap~~~~~~ 249 (250)
T 1oed_B 231 CSIGTFSIFLDASHNVPPD 249 (250)
T ss_dssp HHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCcccCCCC
Confidence 9999999999999998764
No 10
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=100.00 E-value=5.2e-51 Score=383.89 Aligned_cols=246 Identities=31% Similarity=0.451 Sum_probs=122.9
Q ss_pred cceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhhhhHHHhhhhheee
Q psy16242 108 TLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISIC 187 (383)
Q Consensus 108 ~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f~~~~~~~v~~sli 187 (383)
|+||++|+++||+++++|+|++||||+|+|||+++|+|++|++++|++.+++.+|++|+++|+||+|+.+||+++++|++
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~~ 80 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIV 80 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred EEEEEEeecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCC-CC--CCCCCCC-CCCCCcc--ccC-CCc-c-cc
Q psy16242 188 VTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGS-HL--ADGPLIG-GSGGSCK--IHG-HVS-L-SN 258 (383)
Q Consensus 188 ~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~-~~--~~~~~~~-~~~~~~~--~~~-~~~-~-~~ 258 (383)
+|++|+|+|||++.+++||+|+|++|++++|++|+|++|++..... +. ..++..+ ....... ... ... . .+
T Consensus 81 ~tv~vl~~~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (260)
T 1oed_C 81 NCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQNDLKLRRSSSVGYISKAQEYFNIKSRSELMFE 160 (260)
T ss_dssp HHHHHHHHHHHC--------------------------------------------------------------------
T ss_pred HHHheeeeeccCCCCCCccHHHHHHHHHhhhHHhEecCCcccccccccccccccccccccccccchhhcccccccccccc
Confidence 9999999999999999999999999999999999999997641100 00 0000000 0000000 000 000 0 00
Q ss_pred cccccccCCCCCC----CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhhHHHHHHHHHHHH
Q psy16242 259 ILTEAILSSSPQD----DSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLF 334 (383)
Q Consensus 259 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~EWk~vA~VlDRlf 334 (383)
............+ ........ .......++++++++++++|++|+++||++++ +++|||+||||+||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~v~~Ia~~~~~~d~~~~------~~~dWk~vAmVlDRlf 233 (260)
T 1oed_C 161 KQSERHGLVPRVTPRIGFGNNNENI-AASDQLHDEIKSGIDSTNYIVKQIKEKNAYDE------EVGNWNLVGQTIDRLS 233 (260)
T ss_dssp ------------------------------------------------------------------------CCSHHHHH
T ss_pred ccccCCCcccccccCCCCCcccccc-ccccccCHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHH
Confidence 0000000000000 00000000 00012345789999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHhhhHhhhhcCCccccCC
Q psy16242 335 LWIFTLAVLGGTAGIILQAPSLYDDR 360 (383)
Q Consensus 335 L~iF~l~~~v~T~~i~~~~p~~~~~~ 360 (383)
||+|++++++||++||++||++++++
T Consensus 234 L~iF~i~~i~gT~~I~l~ap~~~~~~ 259 (260)
T 1oed_C 234 MFIITPVMVLGTIFIFVMGNFNHPPA 259 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCC
Confidence 99999999999999999999988754
No 11
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=100.00 E-value=8.8e-51 Score=382.33 Aligned_cols=246 Identities=32% Similarity=0.483 Sum_probs=121.9
Q ss_pred cceEEEEEeccchhhhhheeeEEeccCC-CCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhhhhHHHhhhhhee
Q psy16242 108 TLFYTVNIIIPCMGISFLTVLTFYLPSD-SGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISI 186 (383)
Q Consensus 108 ~~~y~~~liiP~~li~~Ls~~~F~lp~~-s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f~~~~~~~v~~sl 186 (383)
|+||++|+++||+++++|+|++||||+| +|||+++|+|++|++++|+..+++.+|++|+++|+||+|+.+||+++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl 80 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV 80 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999 799999999999999999999999999999899999999999999999999
Q ss_pred eEEEEEEeecccCCCCCCCCcchhhhhcccccceeeec-CCCCCCC-C-CCCCCCCCC-CCCCCCccccCCCc-cc-ccc
Q psy16242 187 CVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMR-RPLYNPD-G-SHLADGPLI-GGSGGSCKIHGHVS-LS-NIL 260 (383)
Q Consensus 187 i~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~-~p~~~~~-~-~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~ 260 (383)
+++++|+|+|||++.+++||+|+|++|++++|++|||+ +|++... . ......... ...........+.. .. ++.
T Consensus 81 ~~tv~vln~~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (260)
T 1oed_E 81 MNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEETPEKPQPRRRSSFGIMIKAEEYILKKPRSELMFEEQ 160 (260)
T ss_dssp HHHHHHHHHHHHC-------------------------------------------------------------------
T ss_pred HHHhheeeeeccCCCCCCcchHHHHHHHHhhhHHhEeccCCccccccccccccccccccccccchhhccCcccccccccC
Confidence 99999999999999999999999999999999999999 8865411 0 000000000 00000000000000 00 000
Q ss_pred cccccCCCCCCCC-----CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhhHHHHHHHHHHHHH
Q psy16242 261 TEAILSSSPQDDS-----KHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFL 335 (383)
Q Consensus 261 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~EWk~vA~VlDRlfL 335 (383)
.........+... ..............++++++++++++|++|+++||++++ +++|||+||+|+||+||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~Ia~~~~~~d~~~~------~~~dWk~vAmVlDRlfL 234 (260)
T 1oed_E 161 KDRHGLKRVNKMTSDIDIGTTVDLYKDLANFAPEIKSCVEACNFIAKSTKEQNDSGS------ENENWVLIGKVIDKACF 234 (260)
T ss_dssp -----------------------------------------------------------------------CCHHHHHHH
T ss_pred CcccccccccccccCCCCcccccccccccccCHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHH
Confidence 0000000000000 000000000012335789999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHhhhHhhhhcCCccccC
Q psy16242 336 WIFTLAVLGGTAGIILQAPSLYDD 359 (383)
Q Consensus 336 ~iF~l~~~v~T~~i~~~~p~~~~~ 359 (383)
|+|++++++||++||++||+++++
T Consensus 235 ~iF~i~~i~gT~~I~l~ap~~~~~ 258 (260)
T 1oed_E 235 WIALLLFSIGTLAIFLTGHFNQVP 258 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccc
Confidence 999999999999999999998764
No 12
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=100.00 E-value=3.7e-49 Score=364.32 Aligned_cols=215 Identities=42% Similarity=0.782 Sum_probs=116.1
Q ss_pred cceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhhhhHHHhhhhheee
Q psy16242 108 TLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISIC 187 (383)
Q Consensus 108 ~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f~~~~~~~v~~sli 187 (383)
|+||++|+++||+++++|+|++||+|+|+|||+++|+|++|++++|+..+++.+|++|+++|+||+|+.+||+++++|++
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~sgerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl~ 80 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSII 80 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCCCCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred EEEEEEeecccCCCCCCCCcchhhhhcccccceeeec---CCCCCCCCCCCCCCCCCCCCCCCccccCCCcccccccccc
Q psy16242 188 VTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMR---RPLYNPDGSHLADGPLIGGSGGSCKIHGHVSLSNILTEAI 264 (383)
Q Consensus 188 ~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (383)
++++|+|+|||++.+++||+|+|++|++++|+++||+ +|+++..... .. +...... . .++. . .
T Consensus 81 ~tv~vln~~~r~~~~~~mp~wvr~~~l~~l~~~l~m~~~~rp~~~~~~~~-----~~---~~~~~~~-~--~~~~-~--~ 146 (227)
T 1oed_A 81 ITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASKEKQENK-----IF---ADDIDIS-D--ISGK-Q--V 146 (227)
T ss_dssp HHHHHHHHHHHC--------------------------------------------------------------------
T ss_pred HHHHHHhhhccCCCCCCcchHHHHHHHHhccHhheeccccCCcccccccc-----cc---ccccccc-c--cCCC-C--C
Confidence 9999999999999999999999999999999999996 6643211100 00 0000000 0 0000 0 0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy16242 265 LSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLG 344 (383)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~EWk~vA~VlDRlfL~iF~l~~~v 344 (383)
. . ......+ ....++++++++++++|++|+++||++++ .++|||++|+|+||+|||+|++++++
T Consensus 147 ~----~--~~~~~~~----~~~~~~l~~~~~~v~~I~~~~~~~~~~~~------~~~dWk~vA~VlDRl~l~iF~~~~i~ 210 (227)
T 1oed_A 147 T----G--EVIFQTP----LIKNPDVKSAIEGVKYIAEHMKSDEESSN------AAEEWKYVAMVIDHILLCVFMLICII 210 (227)
T ss_dssp --------------------------------------------------------------CCHHHHHHHHHHHHHHHH
T ss_pred C----C--CCCcccc----ccccHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0000000 11235789999999999999999999999 99999999999999999999999999
Q ss_pred hhHhhhhc
Q psy16242 345 GTAGIILQ 352 (383)
Q Consensus 345 ~T~~i~~~ 352 (383)
||++||++
T Consensus 211 gT~~i~~~ 218 (227)
T 1oed_A 211 GTVSVFAG 218 (227)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999987
No 13
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=100.00 E-value=5.5e-43 Score=341.02 Aligned_cols=193 Identities=13% Similarity=0.130 Sum_probs=175.3
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEe-cccCeE------Eeeeee
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDI-LEVPAV------RNEKFY 88 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l-~~~~~~------~~~~~y 88 (383)
..|+++||||+|+|++ +|+||+|+.+++++.|..+.. ..+.++ .++||++ .+.+.+ ++...|
T Consensus 113 ~~dl~~FPfD~Q~C~l----~f~S~~y~~~~v~l~~~~~~~-----~~~~~~--~~~ew~l~~~~~~~~~~~~y~~~~~~ 181 (322)
T 3rqw_A 113 DMDFRLFPFDRQQFVL----ELEPFSYNNQQLRFSDIQVYT-----ENIDNE--EIDEWWIRGKASTHISDIRYDHLSSV 181 (322)
T ss_dssp CCCCTTTTSCEEEEEE----EEEESSCSSEEEEEEEEECCS-----CSSSSC--SSSSEEECCSCEECCEEEECTTSCCS
T ss_pred cccccCCCCCCcEEEE----EEEEcccCcceEEEEECCCcc-----cccCCC--CCCceEEEeeeEEEeeccccceeeec
Confidence 3489999999999999 999999999999999853210 123333 6799999 998877 666678
Q ss_pred ccCCCCcceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCcccc
Q psy16242 89 TCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 168 (383)
Q Consensus 89 ~~~~~~y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~i 168 (383)
.||+++|+++++++++||+++||++++++||+++++++|++||+| +++||+++|+|++|++++|+..+++.+|++| ++
T Consensus 182 ~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp-~~~~Rv~l~it~lL~~~~~~~~~~~~lP~~s-~v 259 (322)
T 3rqw_A 182 QPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE-SFSERLQTSFTLMLTVVAYAFYTSNILPRLP-YT 259 (322)
T ss_dssp SSSCCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS-SHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS-SC
T ss_pred cCCCCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC-CCCCcEEEEEehHHHHHHHHHHHhhhCCCcc-ch
Confidence 899999999999999999999999999999999999999999999 8899999999999999999999999999999 59
Q ss_pred ccchhhhhHHHhhhhheeeEEEEEEeecccCCCCCCCCcchhhhhccccccee
Q psy16242 169 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRIL 221 (383)
Q Consensus 169 P~i~~f~~~~~~~v~~sli~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l 221 (383)
|+||+|+.+||+++++|++++++++++++|++.+++||+|+|++|+..+..++
T Consensus 260 p~i~~~~~~~~~~v~~sll~~~~v~~l~~~~~~~~~~p~w~r~~fl~~~~~~~ 312 (322)
T 3rqw_A 260 TVIDQMIIAGYGSIFAAILLIIFAHHRQANGVEDDLLIQRCRLAFPLGFLAIG 312 (322)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSCCCHHHHTCTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998875443
No 14
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=100.00 E-value=5.3e-42 Score=333.93 Aligned_cols=187 Identities=19% Similarity=0.256 Sum_probs=174.3
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCCCCc
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPY 95 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~~y 95 (383)
..|+++||||+|+|++ +|+||+|+.+++++.|. .+..+.+++..++||++.+.+..++...|.||+++|
T Consensus 117 ~~dl~~FPfD~Q~C~l----~f~S~~y~~~~v~l~~~-------~~~~~~~~~~~~~ew~l~~~~~~~~~~~~~~~~~~y 185 (321)
T 3tlw_A 117 PLDFRRYPFDSQTLHI----YLIVRSVDTRNIVLAVD-------LEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLE 185 (321)
T ss_dssp CCCCTTTTSCEEEEEE----EEEEECCSSCCEEEEEC-------GGGCEECTTCCBTTEEEEEEEEEEEEEEEEETTEEE
T ss_pred EeecccCCCCceeEeE----EEecccCChhhEEEEEc-------CCcccccccccccceEEEeeEeEEeeEEecCCCCce
Confidence 3489999999999999 99999999999999986 234566778899999999999988888889999999
Q ss_pred ceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhhh
Q psy16242 96 LDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 175 (383)
Q Consensus 96 ~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f~ 175 (383)
+++++++++||+++||++++++||+++++++|++|| |+++|||+++|+|+||++++|+..+++.+|++| ++|+||+|+
T Consensus 186 ~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~~~~Rv~l~it~lL~~t~~~~~~~~~lP~~s-~vp~i~~~~ 263 (321)
T 3tlw_A 186 SKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STSYEANVTLVVSTLIAHIAFNILVETCLPKTP-YMTYTGAII 263 (321)
T ss_dssp EEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCS-SCCHHHHHH
T ss_pred eEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCCCCCcEEEEhhHHHHHHHHHHHHHhhCCCcc-ccHHHHHHH
Confidence 999999999999999999999999999999999999 888899999999999999999999999999999 599999999
Q ss_pred hHHHhhhhheeeEEEEEEeecccCCCCC--CCCcchhhhhcc
Q psy16242 176 IFAMILVSISICVTVVVLNVHFRSPQTH--KMAPWVKRVFIQ 215 (383)
Q Consensus 176 ~~~~~~v~~sli~tv~v~~l~~r~~~~~--~~p~w~r~~~l~ 215 (383)
.+||+++++|++++++|+++++|+++.+ ++|+|+|++|.-
T Consensus 264 ~~~~~~v~~sll~~v~v~~l~~~~~~~~a~~~p~w~r~~fp~ 305 (321)
T 3tlw_A 264 FMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPV 305 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCCccccccccChhheeeehH
Confidence 9999999999999999999999987764 899999998753
No 15
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=100.00 E-value=2e-40 Score=326.17 Aligned_cols=196 Identities=12% Similarity=0.194 Sum_probs=173.3
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCcccccccccc--ccccceEEecccCeEEeeeeeccCCC
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSE--FYMSVEWDILEVPAVRNEKFYTCCDE 93 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~--~~~~~EW~l~~~~~~~~~~~y~~~~~ 93 (383)
..|+++||||+|+|++ +||||+|+.+++++.|..+. .++.+. ....+||++.+.........+ .++
T Consensus 131 ~~dl~~FPfD~Q~C~l----~f~S~~y~~~~v~l~~~~~~------~~~~~~~~~~~~~e~~l~~~~~~~~~~~~--~~~ 198 (347)
T 3rhw_A 131 PMYLQYYPMDVQQCSI----DLASYAYTTKDIEYLWKEHS------PLQLKVGLSSSLPSFQLTNTSTTYCTSVT--NTG 198 (347)
T ss_dssp CCCCTTGGGCEEEEEE----EEEESSCCTTTEEEEECSSC------SEEECTTSGGGCCSEEEEEEEEEECCEEC--SSC
T ss_pred eeeeccCCCcceeEEE----EeccCcCChhhEEEEecCCC------ceeecCcceeEccceEEeeEEeeEeeeee--ccc
Confidence 3488999999999999 99999999999999986432 222222 456789999998765544433 357
Q ss_pred CcceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCC-CCeEEehhhHHHHHHHHHHHHHhhCCCCccccccch
Q psy16242 94 PYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDS-GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLG 172 (383)
Q Consensus 94 ~y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s-~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~ 172 (383)
.|++++++|++||+++||++++++||+++++++|++||||+++ |||+++|+|+||++++|+..+++.+|++| ++|+||
T Consensus 199 ~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~~~~lP~~S-~v~~id 277 (347)
T 3rhw_A 199 IYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVS-YIKAID 277 (347)
T ss_dssp EECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCS-SCCHHH
T ss_pred ceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHHHhhCCCcc-ceeHHH
Confidence 8999999999999999999999999999999999999999999 89999999999999999999999999999 699999
Q ss_pred hhhhHHHhhhhheeeEEEEEEeecccCCCC-CCCCcchhhhhcccccceeeec
Q psy16242 173 KYLIFAMILVSISICVTVVVLNVHFRSPQT-HKMAPWVKRVFIQFLPRILVMR 224 (383)
Q Consensus 173 ~f~~~~~~~v~~sli~tv~v~~l~~r~~~~-~~~p~w~r~~~l~~l~~~l~~~ 224 (383)
+|+.+||+++++|++++++|.+++++++.. ++||+|++++++..+|.++++-
T Consensus 278 ~~~~~~~~~v~~slle~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~ 330 (347)
T 3rhw_A 278 VWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFVF 330 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887544 6899999999999999988764
No 16
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=100.00 E-value=2.2e-38 Score=277.85 Aligned_cols=118 Identities=57% Similarity=0.947 Sum_probs=97.1
Q ss_pred eeccCCCCcceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCcc
Q psy16242 87 FYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSL 166 (383)
Q Consensus 87 ~y~~~~~~y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~ 166 (383)
...||+++|++++|++++|||++||++|+++||+++++++|++||+|+|+|||+++|+|++|++++|+..+++.+|++|+
T Consensus 7 ~~~~~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvslgit~LLs~tvfl~~v~~~lP~tS~ 86 (164)
T 2ksr_A 7 HSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPTSL 86 (164)
T ss_dssp ------------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCSHHHHHHHHHHHHHHHHHHHHHHTTCCSSCT
T ss_pred CCCCCCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCCCCeEEEeeehHHHHHHHHHHHHHHCCCCcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccchhhhhHHHhhhhheeeEEEEEEeecccCCCCCC
Q psy16242 167 VVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHK 204 (383)
Q Consensus 167 ~iP~i~~f~~~~~~~v~~sli~tv~v~~l~~r~~~~~~ 204 (383)
++|+||+|+.+||+++++|++++++++|+++|++++++
T Consensus 87 ~vPlI~~y~~~~m~~v~~sll~tv~Vl~~~~r~~~~~~ 124 (164)
T 2ksr_A 87 DVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHT 124 (164)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTHHHHHHHHTSSCCCCS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCC
Confidence 99999999999999999999999999999998876654
No 17
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.96 E-value=1.4e-32 Score=234.70 Aligned_cols=99 Identities=62% Similarity=1.034 Sum_probs=94.2
Q ss_pred EeeeccceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhhhhHHHhhh
Q psy16242 103 TMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILV 182 (383)
Q Consensus 103 ~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f~~~~~~~v 182 (383)
++|||++||++|+++||+++++++|++||+|+|+|||+++|+|++|++++|+..+++.+|++|+++|+||+|+.+|++++
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~v 81 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIFV 81 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCCCCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hheeeEEEEEEeecccCCC
Q psy16242 183 SISICVTVVVLNVHFRSPQ 201 (383)
Q Consensus 183 ~~sli~tv~v~~l~~r~~~ 201 (383)
++|++++++++|+|+|+++
T Consensus 82 ~~sl~~tv~V~~~~~r~~~ 100 (137)
T 2lly_A 82 TLSIVITVFVLNVHHRSPE 100 (137)
T ss_dssp HHHHHHHHHHHHCCSSCSS
T ss_pred HHHhhhhhhhhhHHhcCCc
Confidence 9999999999999987543
No 18
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.94 E-value=8.9e-32 Score=230.03 Aligned_cols=118 Identities=42% Similarity=0.594 Sum_probs=111.6
Q ss_pred EEeeeeeccCCCCc--------ceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHH
Q psy16242 82 VRNEKFYTCCDEPY--------LDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVF 153 (383)
Q Consensus 82 ~~~~~~y~~~~~~y--------~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vf 153 (383)
.++.+.|+||+++| ++++++|.+|||++||++|+++||+++++|+|++||+|+|+|||+++|+|++|++++|
T Consensus 15 ~~~~~~y~cC~~~y~~~~~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvslgit~lLs~tvf 94 (140)
T 2lkg_A 15 ILKCVFDKICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMTESKSVLKSLTEK 94 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSSSHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCccccCCCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCCCCEEEEeeehHHHHHHH
Confidence 34455788998877 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCccccccchhhhhHHHhhhhheeeEEEEEEeecccC
Q psy16242 154 FLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRS 199 (383)
Q Consensus 154 l~~v~~~lP~tS~~iP~i~~f~~~~~~~v~~sli~tv~v~~l~~r~ 199 (383)
+..+++.+|++|+++|+||+|+.+||+++++|++++++++|+++|+
T Consensus 95 l~~v~~~lP~tS~~vPlI~~y~~~~~~~v~~sll~tv~Vln~~~r~ 140 (140)
T 2lkg_A 95 LKKIVELIPSTSSAVPLIGKYMLFTKEFVESSIKITEEVINTHHRS 140 (140)
T ss_dssp HHGGGGTCTTTGGGHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHHHHhheeeeccC
Confidence 9999999999998999999999999999999999999999999874
No 19
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=99.74 E-value=1.5e-18 Score=158.00 Aligned_cols=77 Identities=21% Similarity=0.341 Sum_probs=72.1
Q ss_pred CCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCCCCcc
Q psy16242 17 HPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYL 96 (383)
Q Consensus 17 ~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~~y~ 96 (383)
.| ++||||+|+|+| +||||+|++.++++.. ...+|+++|.+||||++.+++++++...|.||+++|+
T Consensus 128 ~d-~~fPfD~Q~C~l----~fgSw~y~~~~l~l~~--------~~~~dl~~~~~n~EW~l~~~~~~r~~~~Y~CC~~~y~ 194 (205)
T 4aoe_A 128 LE-NVTTEQGAACTL----KFGPWTYDVRDLVLDE--------SQQVDLTTYAGGERFQLIEAKQKVNKKTYPCCPQSFE 194 (205)
T ss_dssp CT-TSSSSSCEEEEE----EEECSSCCTTTEEEEC--------SSSCBCTTSCTTCSEEEEEEEEEEEEEEETTEEEEEE
T ss_pred cC-cCCCccCCeEEE----EEECccCChheEEEec--------CcccchhccccCCcEEEEeeEEEEEEEEeCCCCCCcc
Confidence 36 789999999999 9999999999999975 3567899999999999999999999999999999999
Q ss_pred eEEEEEEeee
Q psy16242 97 DITFNITMRR 106 (383)
Q Consensus 97 ~i~~~~~lrR 106 (383)
+++|+|+|||
T Consensus 195 dit~~i~lrR 204 (205)
T 4aoe_A 195 DIELRVTFKK 204 (205)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEEE
Confidence 9999999999
No 20
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=99.72 E-value=4.4e-18 Score=154.52 Aligned_cols=85 Identities=12% Similarity=0.032 Sum_probs=62.2
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCCCCc
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPY 95 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~~y 95 (383)
..|+++||||+|+|+| +||||+|+.+++++.|. ...++++++.+++||++.++++.++...|.||+++|
T Consensus 113 ~mdl~~FPfD~Q~C~l----~f~S~~y~~~~v~l~~~-------~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~cc~~~y 181 (201)
T 3igq_A 113 PLDGRRTESDSQTLHI----YLIVRSVDTRNIVLAVD-------LEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLE 181 (201)
T ss_dssp CCC------CEEEEEE----EEEECCCSSCCEEEEEC-------GGGCEESCSEEETTEEEEEEEEEEEC--------CC
T ss_pred CcccccCCCCccEeeE----EEeccCCCceEEEEEec-------CCccccccCcccCCeEEEeeEEEEEEEEeCCCCCcc
Confidence 3489999999999999 99999999999999985 346788899999999999999999999999999999
Q ss_pred ceEEEEEEeeeccceE
Q psy16242 96 LDITFNITMRRKTLFY 111 (383)
Q Consensus 96 ~~i~~~~~lrR~~~~y 111 (383)
++|+|+|.||||.+..
T Consensus 182 ~~i~f~i~irR~~~~~ 197 (201)
T 3igq_A 182 SKLDYQLRISRQGGHH 197 (201)
T ss_dssp CEEEEEEEEEEC----
T ss_pred CeEEEEEEEEECCCCC
Confidence 9999999999998764
No 21
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=99.72 E-value=3.9e-18 Score=155.32 Aligned_cols=87 Identities=22% Similarity=0.319 Sum_probs=76.3
Q ss_pred ccCCcceee--cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEe
Q psy16242 7 CVPAKDEHH--HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRN 84 (383)
Q Consensus 7 ~~p~~~~~~--~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~ 84 (383)
+.|+....+ ..++++|||| |+|+| +||||+|+++++++.+. .++|+++|..||||++.+++++++
T Consensus 116 ~~~~~~~~s~C~~d~~~fPfD-Q~C~l----~fgSw~y~~~~i~l~~~--------~~~dl~~~~~n~EW~l~~~~~~~~ 182 (205)
T 4aod_A 116 YVPQLKVRLSCPLADLKLETG-VTCSL----KSGSWTHSTQELTLEVN--------AKVDLGDYASDTRFQLLNATQQVN 182 (205)
T ss_dssp ECCEEEEEEECCCTTSSSSSC-EEEEE----EEEESSCCTTTEEEECS--------SSCBCTTSCTTCSSEEEEEEEEEE
T ss_pred EeccEEEEEEecCccccCCCC-cEEEE----EEECccccccEEEEEEC--------CCcccccccccCCEEEEeeEEEEE
Confidence 334444444 3488999999 99999 99999999999999973 457899999999999999999999
Q ss_pred eeeeccCCCCcceEEEEEEeee
Q psy16242 85 EKFYTCCDEPYLDITFNITMRR 106 (383)
Q Consensus 85 ~~~y~~~~~~y~~i~~~~~lrR 106 (383)
...|.||+++|++++|+|+|||
T Consensus 183 ~~~Y~cc~~~Y~~it~~~~lrR 204 (205)
T 4aod_A 183 RKQYPCCPETYEDTTLSFTFRK 204 (205)
T ss_dssp EEEETTEEEEEEEEEEEEEEEC
T ss_pred EEEeCCCCCCcceEEEEEEEEC
Confidence 9999999999999999999976
No 22
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=99.69 E-value=4.2e-17 Score=149.23 Aligned_cols=82 Identities=29% Similarity=0.541 Sum_probs=75.6
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCC-CC
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCD-EP 94 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~-~~ 94 (383)
..|+++||||+|+|+| +||||+|+.+++++.|.. ..+++++|..+|||++.+.++.++...|.||+ ++
T Consensus 130 ~mdl~~FPfD~Q~C~l----~f~S~~y~~~~v~l~~~~-------~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~~ 198 (212)
T 2qc1_B 130 EIIVTHFPFDEQNCSM----KLGTRTYDGSAVAINPES-------DQPDLSNFMESGEWVIKEARGWKHWVFYSCCPTTP 198 (212)
T ss_dssp EECCSSSSCCEEEEEE----EEEESSCCTTTEEEEESC-------SSCBCTTCCCCSSEEEEEEEEEEEEEEETTCSSCC
T ss_pred cceeecCCCCceEEeE----EEEcccccCceEEEEecc-------cccchhhCccCCCEEEEEeEEEEEEEecCCCCCCC
Confidence 4488999999999999 999999999999999863 35788899999999999999999888999998 89
Q ss_pred cceEEEEEEeeecc
Q psy16242 95 YLDITFNITMRRKT 108 (383)
Q Consensus 95 y~~i~~~~~lrR~~ 108 (383)
|++++|+|+|||||
T Consensus 199 y~~i~~~~~l~R~p 212 (212)
T 2qc1_B 199 YLDITYHFVMQRLP 212 (212)
T ss_dssp EEEEEEEEEEEECC
T ss_pred eeEEEEEEEEEECc
Confidence 99999999999996
No 23
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=99.66 E-value=1.2e-16 Score=147.73 Aligned_cols=82 Identities=26% Similarity=0.442 Sum_probs=68.6
Q ss_pred cceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCCCCcceEEEEEEe
Q psy16242 25 HTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITM 104 (383)
Q Consensus 25 D~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~~y~~i~~~~~l 104 (383)
|+|+|+| +||||+|+.+++++.|.. ..++++.|..++||++.++++.++...|.||+++|++++|+|+|
T Consensus 145 D~Q~C~l----~f~Sw~y~~~~i~l~~~~-------~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l 213 (228)
T 2wn9_A 145 EGATCAV----KFGSWVYSGFEIDLKTDT-------DQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKF 213 (228)
T ss_dssp TCEEEEE----EEEESSCCTTTEEEECSC-------SBCBCTTCCTTCSEEEEEEEEEEEEECCSSCSSCEEEEEEEEEE
T ss_pred cCcEeeE----EEEeecccccEEEEEecC-------CccchhhceecCCEEEEEEEEEEEEEeecCCCCCeeEEEEEEEE
Confidence 9999999 999999999999999863 35788889999999999999999988999999999999999999
Q ss_pred eeccceEEEEEec
Q psy16242 105 RRKTLFYTVNIII 117 (383)
Q Consensus 105 rR~~~~y~~~lii 117 (383)
||+++||++++++
T Consensus 214 ~R~~~fYii~lil 226 (228)
T 2wn9_A 214 RERRAGNGFFRNL 226 (228)
T ss_dssp EECC---------
T ss_pred EEeccceEEEEEE
Confidence 9999999999875
No 24
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=99.66 E-value=1.2e-16 Score=145.30 Aligned_cols=78 Identities=28% Similarity=0.532 Sum_probs=72.4
Q ss_pred cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCCCCc
Q psy16242 16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPY 95 (383)
Q Consensus 16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~~y 95 (383)
..++ +||||+|+|+| .||||+|+.+++++.+. .+++++|.++|||++.+++++++...|.||+++|
T Consensus 126 ~mdl-~fPfD~Q~C~l----~f~S~~y~~~~v~l~~~---------~~~~~~~~~~~eW~l~~~~~~~~~~~y~~c~~~y 191 (204)
T 3sq6_A 126 DVSG-VDTESGATCKL----KFGSWTHHSRELDLQMQ---------EADISGYIPYSRFELVGVTQKRSERFYECCKEPY 191 (204)
T ss_dssp CCGG-GSSSSCEEEEE----EEEESSCCTTTEEEECC---------CCCCTTSCSSSSEEEEEEEEEEEEEECSSSSSEE
T ss_pred cccc-cCCCCCcEEEE----EEEeecccCeEEEEEec---------cCCHHHcccCCCEEEEEeEEEEEEEeeCCCCCCc
Confidence 4489 99999999999 99999999999999863 3677889999999999999999999999999999
Q ss_pred ceEEEEEEeeec
Q psy16242 96 LDITFNITMRRK 107 (383)
Q Consensus 96 ~~i~~~~~lrR~ 107 (383)
++++|+|+||||
T Consensus 192 ~~i~~~~~lrRr 203 (204)
T 3sq6_A 192 PDVTFTVTFRKK 203 (204)
T ss_dssp EEEEEEEEEEEC
T ss_pred ceEEEEEEEEEC
Confidence 999999999998
No 25
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=99.64 E-value=1.2e-16 Score=147.93 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=68.0
Q ss_pred cccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCCCCcceEEEEE
Q psy16242 23 PYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNI 102 (383)
Q Consensus 23 PfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~~y~~i~~~~ 102 (383)
|||+|+|+| .||||+|+.+++++.|... ..++|+ +|.+|| |++.+++++++...|.||+++|++++|+|
T Consensus 140 PfD~Q~C~l----~f~S~~y~~~~v~l~~~~~-----~~~~d~-~~~~n~-W~l~~~~~~~~~~~y~cc~~~y~~i~f~~ 208 (230)
T 4afh_A 140 QDDVDSCHF----QFGSWVYSVDEVDIHFMDD-----KAEVLL-DFYQDS-LEILENSAQRQEVVYPCCESAYVEMKYLL 208 (230)
T ss_dssp ETTEEEEEE----EEEESSCCTTTEEEEEGGG-----CCSCBC-TTCCCC-CCEEEEEEEEEEECCTTCSSCEEEEEEEE
T ss_pred CCCcccCCE----eeccccccCceEEEEECCC-----Ccccce-eeecCc-EEEEEEEEEEEEEecCCCCCCccEEEEEE
Confidence 999999999 9999999999999998632 124778 899999 99999999999989999999999999999
Q ss_pred EeeeccceEEEEE
Q psy16242 103 TMRRKTLFYTVNI 115 (383)
Q Consensus 103 ~lrR~~~~y~~~l 115 (383)
+||||++||+.+-
T Consensus 209 ~irRrpl~~~~~~ 221 (230)
T 4afh_A 209 ALRSENGNSTYSR 221 (230)
T ss_dssp EEECC--------
T ss_pred EEEEeechhhccc
Confidence 9999999999863
No 26
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=99.58 E-value=2e-15 Score=137.94 Aligned_cols=78 Identities=22% Similarity=0.408 Sum_probs=70.3
Q ss_pred cceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccc-cceEEecccCeEEeeeeeccCCCCcceEEEEEE
Q psy16242 25 HTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYM-SVEWDILEVPAVRNEKFYTCCDEPYLDITFNIT 103 (383)
Q Consensus 25 D~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~-~~EW~l~~~~~~~~~~~y~~~~~~y~~i~~~~~ 103 (383)
|+|+|+| +||||+|+.+++++.|.. ..++++++.. ++||++.+.++.++...|.||+++|++++|+|+
T Consensus 133 D~Q~C~l----~f~S~~y~~~~i~l~~~~-------~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~ 201 (211)
T 1uw6_A 133 SGATCRI----KIGSWTHHSREISVDPTT-------ENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLN 201 (211)
T ss_dssp SCEEEEE----EEEESSCCTTTEEEEECC-------CSSCTTTTSCTTSSEEEEEEEEEEEEEECTTCSSEEEEEEEEEE
T ss_pred cceEeEE----EEEcccccCceEEEEecc-------cccchhhhcccCCCEEEEeeEEEEEEEEeCCCCCCcceEEEEEE
Confidence 9999999 999999999999999863 3567888999 999999999999988899999999999999999
Q ss_pred eeeccceEEE
Q psy16242 104 MRRKTLFYTV 113 (383)
Q Consensus 104 lrR~~~~y~~ 113 (383)
|||+++||++
T Consensus 202 l~R~~~yyil 211 (211)
T 1uw6_A 202 FRKKGRSEIL 211 (211)
T ss_dssp EEECCCC---
T ss_pred EEEccceeEC
Confidence 9999999974
No 27
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=99.52 E-value=1.7e-14 Score=131.03 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=71.0
Q ss_pred CcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCCCCcce
Q psy16242 18 PESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLD 97 (383)
Q Consensus 18 ~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~~y~~ 97 (383)
|+++ ||+|+|+| +||||+|+.+++++.|... .+++++++..++||++.+.++.++...|.||+++|++
T Consensus 126 dl~~--fD~Q~C~l----~f~S~~y~~~~v~l~~~~~------~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~ 193 (203)
T 2bj0_A 126 NVDT--EPGATCRI----KVGSWTHDNKQFALITGEE------GVVNIAEYFDSPKFDLLSATQSLNRKKYSCCENMYDD 193 (203)
T ss_dssp TTTS--SSCEEEEE----EEEESSCCTTTEEEEECTT------TTSCTTTTCCCSSEEEEEEEEEEEEEECTTCSSEEEE
T ss_pred ccCc--cccceeeE----EEEcccccCcEEEEEecCC------CccchhcceecCCEEEEEeEEEEEEEecCCCCCCeeE
Confidence 7777 99999999 9999999999999998631 1267888999999999999999999999999999999
Q ss_pred EEEEEEeeec
Q psy16242 98 ITFNITMRRK 107 (383)
Q Consensus 98 i~~~~~lrR~ 107 (383)
++|+|+||||
T Consensus 194 l~~~~~l~R~ 203 (203)
T 2bj0_A 194 IEITFAFRKK 203 (203)
T ss_dssp EEEEEEEEEC
T ss_pred EEEEEEEEEC
Confidence 9999999997
No 28
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=98.85 E-value=9.3e-12 Score=94.13 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=56.4
Q ss_pred CCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhhhhHHHhhhhheeeEEEEEEeecccC
Q psy16242 137 GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRS 199 (383)
Q Consensus 137 ~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f~~~~~~~v~~sli~tv~v~~l~~r~ 199 (383)
++|++||+|++|+++.....++.++|++| |+++||+|+++|++++|++++|+++|.++.++.
T Consensus 2 paRv~LGittvLtmtt~~~~~~~~lPkVS-YikAiDvw~~~C~~FVF~aLlEya~V~y~~r~~ 63 (76)
T 1vry_A 2 PARVGLGITTVLTLTTQSSGSRASLPKVS-YVKAIDIWLAVCLLFVFSALLEYAAVNFVSRKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCSHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CceEEechHHHHHHHHHhcCcccCCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46899999999999999999999999999 899999999999999999999999988776654
No 29
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=84.06 E-value=0.015 Score=34.91 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=22.6
Q ss_pred CCeEEehhhHHHHHHHHHHHHHhhCCC
Q psy16242 137 GEKVTLSISILISLHVFFLLVVEIIPP 163 (383)
Q Consensus 137 ~eRv~l~it~lLs~~vfl~~v~~~lP~ 163 (383)
++|+++|++.+|+++.+...++..+|+
T Consensus 2 paRv~LGittvLt~tt~~~~~~~~lPk 28 (28)
T 1mot_A 2 PARVGLGITTVLTMTTQSSGSRASLPK 28 (28)
T ss_dssp CHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred CceEEEcchhHHHHHHHHhhHhhhCCC
Confidence 578999999999999888777777774
Done!