RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16242
(383 letters)
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 301 bits (772), Expect = 9e-99
Identities = 103/306 (33%), Positives = 158/306 (51%), Gaps = 11/306 (3%)
Query: 59 ERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIP 118
+ + ++ F + +W I P+ +N + D Y D+TF + ++RK LFY V I+P
Sbjct: 195 KEIMINQDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVP 251
Query: 119 CMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFA 178
C+ IS L +L FYLP D+GEK++LSIS L++L VF LL+ + +P TSL VP++ YL+F
Sbjct: 252 CILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETSLSVPIIISYLMFI 311
Query: 179 MILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADG 238
MILV+ S+ ++VVVLN+H RSP TH M W++++FI+ LP L ++RP+ P
Sbjct: 312 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTI 371
Query: 239 PLIGGSGGSCKI--HGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFC 296
+ V + A+ + K P + +
Sbjct: 372 ISRANDEYFIRKPAGDFVCPVDNARVAVQPERLFSEMKWHLNGLTQPVTLPQDLKEAVEA 431
Query: 297 VRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSL 356
+++IAE + +K+DW+YVA+V DRLFL+IF GT I L A
Sbjct: 432 IKYIAEQLESASEF------DDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHN 485
Query: 357 YDDRVP 362
P
Sbjct: 486 VPPDNP 491
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 300 bits (769), Expect = 5e-98
Identities = 97/330 (29%), Positives = 153/330 (46%), Gaps = 21/330 (6%)
Query: 59 ERVGVDLSEFYMSVEWDILEVPAVRNEKFYTC-CDEPYLDITFNITMRRKTLFYTVNIII 117
E + +D F + EW+I+ PA +N Y D+TF + +RRK LFY +N I
Sbjct: 196 EWIIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFIT 255
Query: 118 PCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIF 177
PC+ ISFL L FYLP++SGEK++ +I +L++ VF LL + +P T+L VPL+GKYL+F
Sbjct: 256 PCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMF 315
Query: 178 AMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLAD 237
M LV+ + +VLN HFR+P TH ++ VK++F++ LPRIL M R D
Sbjct: 316 IMSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRVDEIEQPDWQND 375
Query: 238 GPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAF-------------SHA 284
L S NI + + L Q + L P +
Sbjct: 376 LKLRRSSSVGYISKAQEY-FNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNNENIAASD 434
Query: 285 QCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLG 344
Q + +I + + ++ +W V +DRL ++I T ++
Sbjct: 435 QLHDEIKSGIDSTNYIVKQIKEKNAYD------EEVGNWNLVGQTIDRLSMFIITPVMVL 488
Query: 345 GTAGIILQAPSLYDDRVPIDSKFAEIANSN 374
GT I + P + + ++ +
Sbjct: 489 GTIFIFVMGNFNRPPAKPFEGDPFDYSSDH 518
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 296 bits (759), Expect = 3e-97
Identities = 112/296 (37%), Positives = 161/296 (54%), Gaps = 28/296 (9%)
Query: 59 ERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDE-PYLDITFNITMRRKTLFYTVNIII 117
E DLS F S EW + + ++ +YTCC + PYLDIT++ M+R L++ VN+II
Sbjct: 185 ESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVII 244
Query: 118 PCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIF 177
PC+ SFLTVL FYLP+DSGEK+TLSIS+L+SL VF L++VE+IP TS VPL+GKY++F
Sbjct: 245 PCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLF 304
Query: 178 AMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLAD 237
MI V SI VTVVV+N H RSP TH M WV+++FI +P ++
Sbjct: 305 TMIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTM----------- 353
Query: 238 GPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCV 297
+ + I + I S + P + + V
Sbjct: 354 ----------KRASKEKQENKIFADDIDISDISGKQVTGEVIFQTPLIKNPDVKSAIEGV 403
Query: 298 RFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQA 353
++IAEH + ++S+ E+WKYVA+V+D + L +F L + GT +
Sbjct: 404 KYIAEHMKSDEESS------NAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFAGR 453
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 295 bits (755), Expect = 2e-96
Identities = 95/318 (29%), Positives = 149/318 (46%), Gaps = 19/318 (5%)
Query: 59 ERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDE-PYLDITFNITMRRKTLFYTVNIII 117
E + +D +F + EW I PA +N + D+ + +I F + ++RK LFY +NII
Sbjct: 168 EWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIA 227
Query: 118 PCMGISFLTVLTFYLPSDS-GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLI 176
PC+ IS L VL ++LP+ + G+K TLSIS+L++ +F L+ + +P TSL VPL+GKYLI
Sbjct: 228 PCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLI 287
Query: 177 FAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYN--PDGSH 234
F M + + + V+VLNV R+P TH ++ +K +F++FLP+ L M P+
Sbjct: 288 FVMFVSLVIVTNCVIVLNVSLRTPNTHSLSEKIKHLFLEFLPKYLGMHLEPSEETPEKPQ 347
Query: 235 LADGPLIGGSGGSCKIHGHVSLSNILTE---------AILSSSPQDDSKHLRPPAFSHAQ 285
G + + S ++ E + + D A
Sbjct: 348 PRRRSSFGIMIKAEEYILKKPRSELMFEEQKDRHGLKRVNKMTSDIDIGTTVDLYKDLAN 407
Query: 286 CPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGG 345
P + FIA+ T+ Q+DS E+W + V+D+ WI L G
Sbjct: 408 FAPEIKSCVEACNFIAKSTKEQNDS------GSENENWVLIGKVIDKACFWIALLLFSLG 461
Query: 346 TAGIILQAPSLYDDRVPI 363
T I L P
Sbjct: 462 TLAIFLTGHLNQVPEFPF 479
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 223 bits (569), Expect = 6e-70
Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 61 VGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCM 120
++ F + +W I P+ +N + D Y D+TF + ++RK LFY V I+PC+
Sbjct: 164 AMINQDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCI 220
Query: 121 GISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMI 180
IS L +L FYLP D+GEK++LSIS L++L VF LL+ + +P TSL VP++ YL+F MI
Sbjct: 221 LISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETSLSVPIIISYLMFIMI 280
Query: 181 LVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRP 226
LV+ S+ ++VVVLN+H RSP TH+ +K + Q
Sbjct: 281 LVAFSVILSVVVLNLHHRSPNTHEAVEAIKYIAEQLESASEFDDLK 326
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 220 bits (562), Expect = 8e-69
Identities = 86/162 (53%), Positives = 110/162 (67%), Gaps = 1/162 (0%)
Query: 59 ERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCC-DEPYLDITFNITMRRKTLFYTVNIII 117
E DLS F S EW + + ++ +YTCC D PYLDIT++ M+R L++ VN+II
Sbjct: 161 ESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVII 220
Query: 118 PCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIF 177
PC+ SFLTVL FYLP+DSGEK+TLSIS+L+SL VF L++VE+IP TS VPL+GKY++F
Sbjct: 221 PCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLF 280
Query: 178 AMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPR 219
MI V SI VTVVV+N H RSP TH VK +
Sbjct: 281 TMIFVISSIIVTVVVINTHHRSPSTHSAIEGVKYIAEHMKSD 322
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 215 bits (548), Expect = 2e-68
Identities = 83/259 (32%), Positives = 125/259 (48%), Gaps = 20/259 (7%)
Query: 109 LFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 168
LFY +N I PC+ ISFL L FYLP++SGEK++ +IS+L++ VF LL + +P T+L V
Sbjct: 2 LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 169 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLY 228
PL+GKYL+F M LV+ I +VLN HFR+P TH ++ VK++F++ LPRIL M R
Sbjct: 62 PLIGKYLMFIMSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADE 121
Query: 229 NPDGSHLADGPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAF------- 281
+ D L S I NI + + L Q + L P
Sbjct: 122 SEQPDWQNDLKLRRSS-SVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGN 180
Query: 282 ------SHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFL 335
+ Q + +I + + ++ +W V +DRL +
Sbjct: 181 NNENIAASDQLHDEIKSGIDSTNYIVKQIKEKNAYD------EEVGNWNLVGQTIDRLSM 234
Query: 336 WIFTLAVLGGTAGIILQAP 354
+I T ++ GT I +
Sbjct: 235 FIITPVMVLGTIFIFVMGN 253
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 214 bits (546), Expect = 4e-68
Identities = 90/248 (36%), Positives = 134/248 (54%), Gaps = 8/248 (3%)
Query: 109 LFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 168
LFY V IIPC+ IS L +L FYLP D+GEK++LSIS L+++ VF LL+ + +P TSL V
Sbjct: 2 LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 169 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLY 228
P++ +YL+F MILV+ S+ ++VVVLN+H RSP TH M W++++FI+ LP L ++RP+
Sbjct: 62 PIIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVT 121
Query: 229 N--PDGSHLADGPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQC 286
PD V + A+ + K
Sbjct: 122 TPSPDSKPTIISRANDEYFIRKPAGDFVCPVDNARVAVQPERLFSEMKWHLNGLTQPVTL 181
Query: 287 PPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGT 346
P + + +++IAE + +K+DW+YVA+V DRLFL++F + GT
Sbjct: 182 PQDLKEAVEAIKYIAEQLESASEF------DDLKKDWQYVAMVADRLFLYVFFVICSIGT 235
Query: 347 AGIILQAP 354
I L A
Sbjct: 236 FSIFLDAS 243
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 216 bits (552), Expect = 2e-67
Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 1/159 (0%)
Query: 62 GVDLSEFYMSVEWDILEVPAVRNEKFYTC-CDEPYLDITFNITMRRKTLFYTVNIIIPCM 120
+D F + EW+I+ PA +N Y D+TF + +RRK LFY +N I PC+
Sbjct: 163 IIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCV 222
Query: 121 GISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMI 180
ISFL L FYLP++SGEK++ +I +L++ VF LL + +P T+L VPL+GKYL+F M
Sbjct: 223 LISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMS 282
Query: 181 LVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPR 219
LV+ + +VLN HFR+P TH + Q +
Sbjct: 283 LVTGVVVNCGIVLNFHFRTPSTHSGIDSTNYIVKQIKEK 321
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 214 bits (546), Expect = 1e-66
Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 2/167 (1%)
Query: 62 GVDLSEFYMSVEWDILEVPAVRNEKFYTCCDE-PYLDITFNITMRRKTLFYTVNIIIPCM 120
G+D +F + EW I PA +N + D+ + +I F + ++RK LFY +NII PC+
Sbjct: 164 GIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCV 223
Query: 121 GISFLTVLTFYLPSD-SGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAM 179
IS L VL ++LP+ G+K TLSIS+L++ +F L+ + +P TSL VPL+GKYLIF M
Sbjct: 224 LISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVM 283
Query: 180 ILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRP 226
+ + + V+VLNV R+P TH + +
Sbjct: 284 FVSLVIVTNCVIVLNVSLRTPNTHSCVEACNFIAKSTKEQNDSGSEN 330
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 206 bits (526), Expect = 2e-65
Identities = 87/245 (35%), Positives = 124/245 (50%), Gaps = 27/245 (11%)
Query: 109 LFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 168
L++ VN+IIPC+ SFLT L FYLP+DSGEK+TLSIS+L+SL VF L++VE+IP TS V
Sbjct: 2 LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 169 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLY 228
PL+GKY++F MI V SI +TVVV+N H RSP TH M WV+++FI +P ++
Sbjct: 62 PLIGKYMLFTMIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKR 121
Query: 229 NPDGSHLADGPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPP 288
+ P
Sbjct: 122 ASKEKQENKIFADDIDISDISGK---------------------QVTGEVIFQTPLIKNP 160
Query: 289 VMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAG 348
+ + V++IAEH + ++S E+WKYVA+V+D + L +F L + GT
Sbjct: 161 DVKSAIEGVKYIAEHMKSDEES------SNAAEEWKYVAMVIDHILLCVFMLICIIGTVS 214
Query: 349 IILQA 353
+
Sbjct: 215 VFAGR 219
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 200 bits (510), Expect = 7e-64
Identities = 70/151 (46%), Positives = 93/151 (61%), Gaps = 7/151 (4%)
Query: 83 RNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTL 142
+ T D ++ F RRK LFYT+N+IIPC+ I+ L +L FYLPSD GEK+TL
Sbjct: 3 HHHHHSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTL 62
Query: 143 SISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQT 202
IS+L++L VF LL+ +I+PPTSL VPL+GKYL+F M+LV+ SI +V VLNVH RSP T
Sbjct: 63 CISVLLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTT 122
Query: 203 HKMAPWVK-------RVFIQFLPRILVMRRP 226
H R+F+ + V
Sbjct: 123 HTPRGGGGYVAMVIDRLFLWIFVFVCVFGTI 153
Score = 29.4 bits (66), Expect = 1.3
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 318 MVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQ 352
+ YVA+V+DRLFLWIF + GT G+ LQ
Sbjct: 124 TPRGGGGYVAMVIDRLFLWIFVFVCVFGTIGMFLQ 158
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 199 bits (506), Expect = 5e-62
Identities = 81/259 (31%), Positives = 122/259 (47%), Gaps = 20/259 (7%)
Query: 109 LFYTVNIIIPCMGISFLTVLTFYLPSDSG-EKVTLSISILISLHVFFLLVVEIIPPTSLV 167
LFY +NII PC+ IS L VL ++LP+ +G +K TLSIS+L++ +F L+ + +P TSL
Sbjct: 2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLN 61
Query: 168 VPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPL 227
VPL+GKYLIF M + + + V+VLNV R+P TH ++ +K +F+ FLP+ L M+
Sbjct: 62 VPLIGKYLIFVMFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEP 121
Query: 228 Y------------NPDGSHLADGPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKH 275
+ G + I S + + L +S D
Sbjct: 122 SEETPEKPQPRRRSSFGIMIKAEEYILKKPRSELMFEEQKDRHGLKRVNKMTSDIDIGTT 181
Query: 276 LRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFL 335
+ A P + FIA+ T+ Q+DS E+W + V+D+
Sbjct: 182 VDLYKD-LANFAPEIKSCVEACNFIAKSTKEQNDS------GSENENWVLIGKVIDKACF 234
Query: 336 WIFTLAVLGGTAGIILQAP 354
WI L GT I L
Sbjct: 235 WIALLLFSIGTLAIFLTGH 253
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 193 bits (492), Expect = 6e-59
Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 8/168 (4%)
Query: 63 VDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGI 122
V ++ WDI AV + D + + + + R+ Y NII+P + I
Sbjct: 153 VGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFI 212
Query: 123 SFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILV 182
F++ F+ S VTL +S LI+ F +LV +P T + G + +
Sbjct: 213 LFISWTAFWSTS-YEANVTLVVSTLIAHIAFNILVETCLPKTPY-MTYTGAIIFMIYLFY 270
Query: 183 SISICVTVVV--LNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLY 228
+++ V L V + + + + F P + ++ +
Sbjct: 271 FVAVIEVTVQHYLKVESQPARAASITRASRIAF----PVVFLLANIIL 314
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 183 bits (465), Expect = 2e-57
Identities = 64/124 (51%), Positives = 84/124 (67%)
Query: 104 MRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPP 163
LFYT+N+IIPC+ IS LTVL FYLPS+ GEK+TL IS+L+SL VF LL+ EIIP
Sbjct: 3 AEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPS 62
Query: 164 TSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVM 223
TS V P +G+YL+F MI V++SI +TV VLNVH RSP+TH ++ I+ +
Sbjct: 63 TSSVSPSIGEYLLFTMIFVTLSIVITVFVLNVHHRSPETHTGGGGGIDRIFLWMFIIVCL 122
Query: 224 RRPL 227
+
Sbjct: 123 LGTV 126
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR
{Torpedo marmorata} PDB: 2lkh_A
Length = 140
Score = 157 bits (398), Expect = 2e-47
Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 73 EWDILEVPAVRNEKFYTCC-DEPYLDITFNITMRRKT------LFYTVNIIIPCMGISFL 125
++ ++ C ++ I + ++ L++ VN+I PC S L
Sbjct: 7 HHAMVIDHILKCVFDKICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSEL 66
Query: 126 TVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSIS 185
T L FYLP+DSGEK+T S S+L SL +VE+IP TS VPL+GKY++F V S
Sbjct: 67 TGLVFYLPTDSGEKMTESKSVLKSLTEKLKKIVELIPSTSSAVPLIGKYMLFTKEFVESS 126
Query: 186 ICVTVVVLNVHFRS 199
I +T V+N H RS
Sbjct: 127 IKITEEVINTHHRS 140
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 149 bits (379), Expect = 2e-42
Identities = 26/174 (14%), Positives = 60/174 (34%), Gaps = 10/174 (5%)
Query: 59 ERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCC-------DEPYLDITFNITMRRKTLFY 111
+V + + EW I + + IT I R +Y
Sbjct: 145 IQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYY 204
Query: 112 TVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLL 171
+ I+P I + F+L S S E++ S ++++++ + I+P ++
Sbjct: 205 LWSFILPLGLIIAASWSVFWLESFS-ERLQTSFTLMLTVVAYAFYTSNILPRLPY-TTVI 262
Query: 172 GKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVF-IQFLPRILVMR 224
+ +I + +I + + + + + + F + FL V+
Sbjct: 263 DQMIIAGYGSIFAAILLIIFAHHRQANGVEDDLLIQRCRLAFPLGFLAIGCVLV 316
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 117 bits (296), Expect = 2e-30
Identities = 21/170 (12%), Positives = 62/170 (36%), Gaps = 5/170 (2%)
Query: 61 VGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCM 120
+ + + + + Y + I ++R+ FY + + IP
Sbjct: 168 LQLKVGLSSSLPSFQLTNT--STTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSC 225
Query: 121 GISFLTVLTFYLPSDS-GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAM 179
+ ++ ++F+ + +VTL ++ L+++ + +PP S + + ++ M
Sbjct: 226 MLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVS-YIKAIDVWIGACM 284
Query: 180 ILVSISICVTVVVLNVHFRSPQTHK-MAPWVKRVFIQFLPRILVMRRPLY 228
+ ++ +V ++ ++ V + P + + LY
Sbjct: 285 TFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFVFNILY 334
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 96.0 bits (239), Expect = 3e-23
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 62 GVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIII 117
VDLS +Y S +++IL R + Y+CC EPY+D+ + R + +
Sbjct: 171 QVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL 226
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 91.9 bits (228), Expect = 8e-22
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 62 GVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVN--IIIPC 119
++ + +ILE A R E Y CC+ Y+++ + + +R + T + +
Sbjct: 168 KAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYSRDLAHHH 227
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 89.2 bits (221), Expect = 5e-21
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 62 GVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTV 113
D F ++IL+V +N Y+CC E Y D+ ++ R+K +
Sbjct: 160 SDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 211
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 82.5 bits (204), Expect = 1e-18
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 62 GVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRK 107
V+++E++ S ++D+L N K Y+CC+ Y DI R+K
Sbjct: 158 VVNIAEYFDSPKFDLLSATQSLNRKKYSCCENMYDDIEITFAFRKK 203
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 77.5 bits (191), Expect = 7e-17
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 62 GVDLSEFYMSVEWDILEVPAVRNEKFYTCC-DEPYLDITFNITMRRK 107
DLS F S EW I E ++ FY+CC PYLDIT++ M+R
Sbjct: 165 QPDLSNFMESGEWVIKEARGWKHWVFYSCCPTTPYLDITYHFVMQRL 211
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 74.1 bits (182), Expect = 1e-15
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 62 GVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRK 107
D+S + ++++ V R+E+FY CC EPY D+TF +T R+K
Sbjct: 158 EADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKK 203
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 66.2 bits (162), Expect = 6e-13
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 59 ERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFY 111
+ V ++ WDI AV + D + + + + R+ +
Sbjct: 145 DLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQGGHH 197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 65/409 (15%), Positives = 114/409 (27%), Gaps = 157/409 (38%)
Query: 22 YPYHTAA---RSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILE 78
Y S E LS R + K + + G+++ +EW LE
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEK--VFTQ---------GLNI------LEW--LE 220
Query: 79 VPAVRNEKFYTCCDEPYLD---ITFNITMRRKTLFYTVNIIIPC--MGISFLTVLTFYLP 133
P+ D+ YL I+ + + + ++ +G + + + YL
Sbjct: 221 NPSNTP-------DKDYLLSIPISCPLI----GVIQLAHYVVTAKLLGFTPGELRS-YLK 268
Query: 134 SDSGEKVTLSISILIS---------------LHVFFLLVV---EIIPPTSLVVPLLGKYL 175
+G L ++ I+ + V F + V E P TSL P +
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-PSI---- 323
Query: 176 IFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFL-PRILVMRRPLYNPDGSH 234
+ + N SP M + + + + + L P G
Sbjct: 324 --------LEDSLEN---NEGVPSP----MLS-ISNLTQEQVQDYVNKTNSHL--PAGKQ 365
Query: 235 LADGPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQD---DSKHLR----PPAFSHAQCP 287
+ +SL N ++S PQ + LR P ++ P
Sbjct: 366 V-----------------EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 288 -----PVMHRSCFCVRF--IAE--HT--------RMQDDSTKESTLIMVK---------E 321
F RF +A H+ + D K + K
Sbjct: 409 FSERKLK-----FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 322 DWK----YVALVLDRLFLWIFTLAVL-----------------GGTAGI 349
D + +R+ I L V GG +G+
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Score = 37.0 bits (85), Expect = 0.011
Identities = 30/211 (14%), Positives = 62/211 (29%), Gaps = 69/211 (32%)
Query: 141 TLSISILI--SLHVF-------FLLVVEIIP-----------PTSLVVPLLGKYLIFAMI 180
+L +L+ + F +I+P PT+ L+GK+L +
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFN---KILPEPTEGFAADDEPTT-PAELVGKFLGYVSS 70
Query: 181 LVSISIC-----VTVVVLNVHFRS----------------PQTHKMAPWVKRVFIQFLPR 219
LV S V + L F + + K + ++
Sbjct: 71 LVEPSKVGQFDQVLNLCLT-EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 220 ILVMRRPLYNPDGSHL----ADG-----PLIGGSGGSC-------KIHGHVSLSNILTEA 263
++ +RP S L +G + GG G + ++ ++L
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY---QTYHVLVGD 186
Query: 264 ILSSSPQDDSKHLRPPAFSHAQCPPVMHRSC 294
++ S ++ L + V +
Sbjct: 187 LIKFS----AETLSELIRTTLDAEKVFTQGL 213
Score = 35.8 bits (82), Expect = 0.024
Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 30/168 (17%)
Query: 21 FYPYHTAARST-EDLSRFKRESSRKNKDDLSPRRPP----HRRERVGVDLSEFYMSVEWD 75
Y AA+ +++ + D+ P H G + E Y ++ ++
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 76 ILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVN--IIIPCMGISFLTVL--TFY 131
+ ++ EK + +E TF + L T + M + L
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 132 LPSDS-------GE--------KVTLSISILISLHVFF--LLVVEIIP 162
+P+D+ GE V +SI L+ + VF+ + + +P
Sbjct: 1753 IPADATFAGHSLGEYAALASLADV-MSIESLVEV-VFYRGMTMQVAVP 1798
Score = 35.4 bits (81), Expect = 0.039
Identities = 45/310 (14%), Positives = 77/310 (24%), Gaps = 146/310 (47%)
Query: 120 MGISFLTVLTFYLPSDSGEKV----------TLSISILISLHVFFLLVVEIIP--PTSLV 167
MG + Y S + + V T SIL +I+ P +L
Sbjct: 1631 MG------MDLYKTSKAAQDVWNRADNHFKDTYGFSIL-----------DIVINNPVNLT 1673
Query: 168 VPLLGK--------Y--LIFAMILVSISIC------VTVVVLNVHFRSP-----QTHKMA 206
+ G+ Y +IF I+ + + FRS T
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ--- 1730
Query: 207 PWVKRVFIQFLPRILVMRRPLYN--------PDGSHLADGPLIGGSGGSCKIHGH----- 253
F Q P + +M + + P + A GH
Sbjct: 1731 ------FTQ--PALTLMEKAAFEDLKSKGLIPADATFA---------------GHSLGEY 1767
Query: 254 ---VSLSNILT--EAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQD 308
SL+++++ + + V +R + +
Sbjct: 1768 AALASLADVMSIESLV----------EV------------VFYRG------MTMQVAVPR 1799
Query: 309 DSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYD--DRVPIDS- 365
D S M+ A+ G +L +RV +
Sbjct: 1800 DELGRSNYGMI---------------------AINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 366 KFAEIANSNS 375
EI N N
Sbjct: 1839 WLVEIVNYNV 1848
Score = 31.6 bits (71), Expect = 0.61
Identities = 53/278 (19%), Positives = 85/278 (30%), Gaps = 95/278 (34%)
Query: 71 SVEWDILEVPA-------VRNEKF----------YTCCDEPY----LDITFNITMRRKTL 109
S+E +L VP E+F + DEP L F L
Sbjct: 15 SLEHVLL-VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF--------L 65
Query: 110 FYTVNIIIPCMGISFLTVLT-----F---YLPSDSGEKV-TLSISILISLHVFFLLVVEI 160
Y +++ P F VL F YL G + L+ +L + E+
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYL---EGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 161 I------------PPTSLVVPLL------GK---YLIF-------------AMI------ 180
I P L G IF +
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 181 LVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPL 240
LV I + L+ R+ ++VF Q L + + P PD +L P+
Sbjct: 183 LVGDLIKFSAETLSELIRTTLD------AEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 241 IGGSGGSCKIHGHVSLSNILTEA-ILSSSPQDDSKHLR 277
SC + G + L++ + A +L +P + +L+
Sbjct: 237 ------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.33
Identities = 67/447 (14%), Positives = 121/447 (27%), Gaps = 170/447 (38%)
Query: 14 HHHHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSV- 72
HHHH F + E + KD LS D+ + S+
Sbjct: 2 HHHHHMDF-----------ETG----EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL 46
Query: 73 ---EWD-ILEVPAVRN---------------------------------EKFYTCCDEPY 95
E D I+ + T +P
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 96 LDITFNITMRRKTLFYTVNIIIPCMGIS---FLTVLTFYL----PSD---------SGEK 139
+ I R + Y N + +S L L P+ SG K
Sbjct: 107 MMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-K 163
Query: 140 VTLSISILISL--------HVFFLLVVEIIPPTSLVVPLLGKYLIF-----AMILVSISI 186
+++ + +S +F+L + P +++ L + S +I
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 187 CVTVVVLNVHFRSPQTHKMAP---------WVKRVFIQFLP--RILVMRRPLYNPDGSHL 235
+ + + R K + + F +IL+ R +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-----FKQ-V 277
Query: 236 ADGPLIGGSGGSCKIHGHVSLSNI---LTEA--------ILSSSPQDDSKHLRPPAFSHA 284
D + + + H+SL + LT L PQD L +
Sbjct: 278 TD--FLSAATTT-----HISLDHHSMTLTPDEVKSLLLKYLDCRPQD----LPREVLTTN 326
Query: 285 QCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVAL------------VLD- 331
P + IAE ++D +T ++WK+V VL+
Sbjct: 327 --P-------RRLSIIAE--SIRDGL---ATW----DNWKHVNCDKLTTIIESSLNVLEP 368
Query: 332 ----RLF--LWIF---------TLAVL 343
++F L +F L+++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLI 395
>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody
complex, toxin- system complex; 2.61A {Clostridium
botulinum} PDB: 2nz9_A 3bta_A 3v0a_A* 3v0b_A 3v0c_A
3zus_A 3zur_A
Length = 1295
Score = 30.6 bits (68), Expect = 1.1
Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 19/156 (12%)
Query: 80 PAVRNEKFYTCCDEPYLDITFNITMRRKTL--FYTVNIIIPCMGISFLTVLTFYLPSDSG 137
A F ++ D T + T + IIIP +G + Y G
Sbjct: 595 KATEAAMFLGWVEQLVYDFTDETS-EVSTTDKIADITIIIPYIGPALNIGNMLYKDDFVG 653
Query: 138 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTV----VVL 193
+ IL+ E IP + +P+LG + + + I + T+
Sbjct: 654 ALIFSGAVILL----------EFIP--EIAIPVLGTFALVSYIANKVLTVQTIDNALSKR 701
Query: 194 NVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYN 229
N + + + W+ +V Q M+ L N
Sbjct: 702 NEKWDEVYKYIVTNWLAKVNTQIDLIRKKMKEALEN 737
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 1.1
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 28/82 (34%)
Query: 22 YPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMS-VEWDILEVP 80
Y S + +K + P R +S +E L
Sbjct: 124 YSSEVKENSVDS----------DDKAKVPPL---IR-----------IVSGLE---LSDT 156
Query: 81 AVRNEKFYTCCDEPYLDITFNI 102
+ +KF EP+ +I +
Sbjct: 157 KQKGKKFLVIAYEPFENIAIEL 178
>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron
oxido-reductase, oxidoreductase; HET: CIT; 2.30A
{Streptococcus pneumoniae} PDB: 3qau_A
Length = 458
Score = 30.4 bits (68), Expect = 1.1
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 12 DEHHHHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERV 61
HHHH P + S + R S + + + S + R E +
Sbjct: 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSMKISWNGFSKKSYQERLELL 54
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease,
transmembrane, hydrolase; 1.90A {Clostridium botulinum}
SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A*
1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A
1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 3zuq_A 2etf_A 2xhl_A
1z0h_A 2nm1_A 3g94_A 1f82_A ...
Length = 1290
Score = 30.2 bits (67), Expect = 1.6
Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 19/156 (12%)
Query: 80 PAVRNEKFYTCCDEPYLDITFNITMRRKTL--FYTVNIIIPCMGISFLTVLTFYLPSDSG 137
V F + D + T+ +++I+P +G++ +
Sbjct: 582 KVVEAGLFAGWVKQIVNDFVIEAN-KSNTMDKIADISLIVPYIGLALNVGNETAKGNFEN 640
Query: 138 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVL---- 193
SIL+ E IP L++P++G +L+ + I I T+
Sbjct: 641 AFEIAGASILL----------EFIP--ELLIPVVGAFLLESYIDNKNKIIKTIDNALTKR 688
Query: 194 NVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYN 229
N + +A W+ V QF M + L
Sbjct: 689 NEKWSDMYGLIVAQWLSTVNTQFYTIKEGMYKALNY 724
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD,
WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Length = 195
Score = 28.7 bits (63), Expect = 2.9
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 30 STEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEV 79
+ D++R + K+ D P H+R +D S+ IL++
Sbjct: 21 NDADMARLLEQWE-KDDDIEEGDLPEHKRPSAPIDFSKLDPGKPESILKM 69
>3ffz_A Botulinum neurotoxin type E; botulinum neurotoxin serotype E,
botulism, domain organization, endopeptidase,
translocation, hydrolase; 2.65A {Clostridium botulinum}
Length = 1252
Score = 28.6 bits (63), Expect = 4.9
Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 22/159 (13%)
Query: 80 PAVRNEKFYTCCDEPYLDITFNITMRRKTL--FYTVNIIIPCMGISFLTVLTFYLPSDSG 137
V+ F + + +D T ++ T+ ++I++P +G++ +
Sbjct: 565 KPVQAALFVSWIQQVLVDFTTEAN-QKSTVDKIADISIVVPYIGLALNIGNEAQKGNFKD 623
Query: 138 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVL---- 193
L IL+ E P L++P + + I + + S + + +
Sbjct: 624 ALELLGAGILL----------EFEP--ELLIPTILVFTIKSFLGSSDNKNKVIKAINNAL 671
Query: 194 ---NVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYN 229
+ ++ + ++ W+ ++ QF R M + L N
Sbjct: 672 KERDEKWKEVYSFIVSNWMTKINTQFNKRKEQMYQALQN 710
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6,
mechanism, cytoplasm, glycosyltransferase, nucleus;
1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A*
3c2v_A* 3c2r_A*
Length = 294
Score = 27.5 bits (62), Expect = 7.2
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 207 PWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIGGSGGSCKIHGHVSLSNILT 261
P+ + VF Q ++ + + +GS L G KI G NIL
Sbjct: 56 PFAQEVFNQCELQVEWLFK-----EGSFLEPSKNDSGKIVVAKITG--PAKNILL 103
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 27.7 bits (62), Expect = 7.8
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 156 LVVEIIPPTSL--VVPLLGKYLIFAMILVSISICVTVVVLNVHFRSP 200
LV V+ +G + I ++ + + + ++V+ R
Sbjct: 226 LVDSTNQVGHFQKVLTAIGNFCICSIAIG---MVIEIIVMYPIQRRK 269
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.432
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,031,613
Number of extensions: 361098
Number of successful extensions: 1036
Number of sequences better than 10.0: 1
Number of HSP's gapped: 993
Number of HSP's successfully gapped: 45
Length of query: 383
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 288
Effective length of database: 4,049,298
Effective search space: 1166197824
Effective search space used: 1166197824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.6 bits)