RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16242
(383 letters)
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 250
Score = 204 bits (519), Expect = 1e-64
Identities = 89/251 (35%), Positives = 134/251 (53%), Gaps = 8/251 (3%)
Query: 109 LFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 168
LFY V IIPC+ IS L +L FYLP D+GEK++LSIS L+++ VF LL+ + +P TSL V
Sbjct: 2 LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 169 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLY 228
P++ +YL+F MILV+ S+ ++VVVLN+H RSP TH M W++++FI+ LP L ++RP+
Sbjct: 62 PIIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVT 121
Query: 229 NPDGSHLADGPLIGGSGGSCK--IHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQC 286
P + V + A+ + K
Sbjct: 122 TPSPDSKPTIISRANDEYFIRKPAGDFVCPVDNARVAVQPERLFSEMKWHLNGLTQPVTL 181
Query: 287 PPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGT 346
P + + +++IAE + +K+DW+YVA+V DRLFL++F + GT
Sbjct: 182 PQDLKEAVEAIKYIAEQLESASEFDD------LKKDWQYVAMVADRLFLYVFFVICSIGT 235
Query: 347 AGIILQAPSLY 357
I L A
Sbjct: 236 FSIFLDASHNV 246
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 201 bits (512), Expect = 3e-63
Identities = 80/257 (31%), Positives = 129/257 (50%), Gaps = 18/257 (7%)
Query: 109 LFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 168
LFY +N I PC+ ISFL L FYLP++SGEK++ +IS+L++ VF LL + +P T+L V
Sbjct: 2 LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 169 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLY 228
PL+GKYL+F M LV+ I +VLN HFR+P TH ++ VK++F++ LPRIL M R
Sbjct: 62 PLIGKYLMFIMSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADE 121
Query: 229 NPDGSHLADGPL-----IGGSGGSCKIHGHVSLSNILTE-------AILSSSPQDDSKHL 276
+ D L +G + + S S ++ E + +P+ +
Sbjct: 122 SEQPDWQNDLKLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNN 181
Query: 277 RPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLW 336
+ Q + +I + + ++ + +W V +DRL ++
Sbjct: 182 NENIAASDQLHDEIKSGIDSTNYIVKQIKEKNAYDE------EVGNWNLVGQTIDRLSMF 235
Query: 337 IFTLAVLGGTAGIILQA 353
I T ++ GT I +
Sbjct: 236 IITPVMVLGTIFIFVMG 252
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 192 bits (488), Expect = 7e-60
Identities = 82/267 (30%), Positives = 126/267 (47%), Gaps = 23/267 (8%)
Query: 109 LFYTVNIIIPCMGISFLTVLTFYLPSDS-GEKVTLSISILISLHVFFLLVVEIIPPTSLV 167
LFY +NII PC+ IS L VL ++LP+ + G+K TLSIS+L++ +F L+ + +P TSL
Sbjct: 2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLN 61
Query: 168 VPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRP- 226
VPL+GKYLIF M + + + V+VLNV R+P TH ++ +K +F+ FLP+ L M+
Sbjct: 62 VPLIGKYLIFVMFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEP 121
Query: 227 -----------LYNPDGSHLADGPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKH 275
+ G + I S + + L + + D
Sbjct: 122 SEETPEKPQPRRRSSFGIMIKAEEYILKKPRSELMFEEQKDRHGLK-RVNKMTSDIDIGT 180
Query: 276 LRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFL 335
A P + FIA+ T+ Q+DS E+W + V+D+
Sbjct: 181 TVDLYKDLANFAPEIKSCVEACNFIAKSTKEQNDSGS------ENENWVLIGKVIDKACF 234
Query: 336 WIFTLAVLGGTAGIILQAPSLYDDRVP 362
WI L GT I L + ++VP
Sbjct: 235 WIALLLFSIGTLAIFLTG---HFNQVP 258
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 227
Score = 182 bits (462), Expect = 3e-56
Identities = 89/244 (36%), Positives = 132/244 (54%), Gaps = 27/244 (11%)
Query: 109 LFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 168
L++ VN+IIPC+ SFLT L FYLP+DSGEK+TLSIS+L+SL VF L++VE+IP TS V
Sbjct: 2 LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 169 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLY 228
PL+GKY++F MI V SI +TVVV+N H RSP TH M WV+++FI +P ++
Sbjct: 62 PLIGKYMLFTMIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTM-- 119
Query: 229 NPDGSHLADGPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPP 288
+ + I G ++ + + P
Sbjct: 120 KRASKEKQENKIFADDIDISDISGKQVTGEVIFQ-------------------TPLIKNP 160
Query: 289 VMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAG 348
+ + V++IAEH + ++S+ E+WKYVA+V+D + L +F L + GT
Sbjct: 161 DVKSAIEGVKYIAEHMKSDEESSN------AAEEWKYVAMVIDHILLCVFMLICIIGTVS 214
Query: 349 IILQ 352
+
Sbjct: 215 VFAG 218
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
pond snail (Lymnaea stagnalis) [TaxId: 6523]}
Length = 208
Score = 71.7 bits (175), Expect = 3e-15
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 62 GVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRK 107
D F ++IL+V +N Y+CC E Y D+ ++ R+K
Sbjct: 160 SDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 205
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 196
Score = 28.6 bits (63), Expect = 0.92
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 8/62 (12%)
Query: 252 GHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDST 311
G V + SS P P F + + R + M++
Sbjct: 110 GSVHIL--------SSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFA 161
Query: 312 KE 313
E
Sbjct: 162 GE 163
>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 236
Score = 28.7 bits (64), Expect = 1.0
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 300 IAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLW 336
IAE + ++S K+STLIM L+ D L LW
Sbjct: 205 IAELDTLGEESYKDSTLIM--------QLLRDNLTLW 233
>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId:
9913]}
Length = 230
Score = 26.7 bits (59), Expect = 4.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 300 IAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLW 336
IAE + ++S K+STLIM L+ D L LW
Sbjct: 200 IAELDTLSEESYKDSTLIM--------QLLRDNLTLW 228
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 25.2 bits (55), Expect = 4.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 38 KRESSRKNKDDLSPRRPP 55
K+ ++RK KD +P+R
Sbjct: 8 KKRTTRKKKDPNAPKRAL 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.432
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,474,694
Number of extensions: 68633
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 11
Length of query: 383
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,213,086
Effective search space: 359073456
Effective search space used: 359073456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.8 bits)