RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16243
(782 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 145 bits (368), Expect = 2e-37
Identities = 55/327 (16%), Positives = 96/327 (29%), Gaps = 74/327 (22%)
Query: 243 KFFDPMRKRCPHYLSKMVAVTGDCLKPGVGINSEDRQTLVDNIHVVFHCAATVRFDAHLK 302
+ +R ++ V GD +P +G++ + L + + ++ AA V + +
Sbjct: 126 GDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHE 185
Query: 303 VAVSINLRATKALLEMAKEMKQLKSFVHVSTAYSNCRQPIIEERFYEPPVNPNHLIQITE 362
N+ T L+ +A K LK F +VSTA F E
Sbjct: 186 -LFGPNVAGTAELIRIALTTK-LKPFTYVSTADVGAAIE--PSAFTEDA----------- 230
Query: 363 LLNDDMIDKITPGIVDYWPNTYALTKQVAEDMVRRGGA--GMPVAMVRPSIVIATNKEPI 420
D + T + W Y +K E ++R +PVA+ R +++A
Sbjct: 231 ---DIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSY-- 285
Query: 421 PGWINNHYGPTVIATNKEPIPGWINNHYGPTGIVAGA-GLGLL-------RSMHADPELV 472
G +N T +V G+ S
Sbjct: 286 --------------------AGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAH 325
Query: 473 ADMVPADNVINCIISAAWNVHQTWNEKKAAGKLVADSLDKNYPDDTDIEIYNYVSSTQKP 532
D +P V I V + Y+ ++
Sbjct: 326 FDGLPVTFVAEAIAVLGARVAGS--------------------SLAGFATYHVMNPHDDG 365
Query: 533 IKWKEFMALNEKA---VPEIPSTFAIW 556
I E++ +A + I FA W
Sbjct: 366 IGLDEYVDWLIEAGYPIRRIDD-FAEW 391
Score = 73.8 bits (181), Expect = 8e-14
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 161 FFDPMRKRCPHYLSKMVAVTGDCLKPGVGINSEDRQTLVDNIHVVFHCAATVRFDAHLKV 220
+ +R ++ V GD +P +G++ + L + + ++ AA V + +
Sbjct: 127 DPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHE- 185
Query: 221 AVSINLRATKALLEMAKEMKQLKFFDPMRKRCPHYLS 257
N+ T L+ +A K LK F Y+S
Sbjct: 186 LFGPNVAGTAELIRIALTTK-LKPF--------TYVS 213
Score = 48.8 bits (116), Expect = 5e-06
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 18/87 (20%)
Query: 66 SFVHVSTAYSNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYAL 125
F +VSTA F E D + T + W Y
Sbjct: 208 PFTYVSTADVGAAIE--PSAFTEDA--------------DIRVISPTRTVDGGWAGGYGT 251
Query: 126 TKQVAEDMVRRGGA--GMPVAMVRPSI 150
+K E ++R +PVA+ R +
Sbjct: 252 SKWAGEVLLREANDLCALPVAVFRCGM 278
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 74.6 bits (184), Expect = 2e-14
Identities = 24/182 (13%), Positives = 48/182 (26%), Gaps = 42/182 (23%)
Query: 277 DRQTL---VDNIHVVFHCAATVRFDA-HLKVAVSINLRATKALLEMAKEMKQLKSFVHVS 332
D L + + V A + V+ L T + + + ++V
Sbjct: 67 DHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQAR-VPRILYVG 125
Query: 333 T----AYSNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALTK 388
+ P E FY+ + ++Y L K
Sbjct: 126 SAYAMPRHPQGLPGHEGLFYDSLPSGK--------------------------SSYVLCK 159
Query: 389 QVAEDMVRRGGA-GMPVAMVRPSIVIATNKEPIPGWINNHYGPTVIATNKEPIPGWINNH 447
++ R G+PV + P +V+ I G + A + ++
Sbjct: 160 WALDEQAREQARNGLPVVIGIPGMVLG------ELDIGPTTGRVITAIGNGEMTHYVAGQ 213
Query: 448 YG 449
Sbjct: 214 RN 215
Score = 39.6 bits (93), Expect = 0.003
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 4/51 (7%)
Query: 194 DRQTL---VDNIHVVFHCAATVRFDA-HLKVAVSINLRATKALLEMAKEMK 240
D L + + V A + V+ L T + +
Sbjct: 67 DHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQAR 117
Score = 39.2 bits (92), Expect = 0.004
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 31/92 (33%)
Query: 67 FVHVST----AYSNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNT 122
++V + P E FY+ + ++
Sbjct: 121 ILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGK--------------------------SS 154
Query: 123 YALTKQVAEDMVRRGGA-GMPVAMVRPSIDLG 153
Y L K ++ R G+PV + P + LG
Sbjct: 155 YVLCKWALDEQAREQARNGLPVVIGIPGMVLG 186
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.2 bits (148), Expect = 1e-09
Identities = 80/512 (15%), Positives = 140/512 (27%), Gaps = 229/512 (44%)
Query: 36 KSGPISASKNSTASLNSCLPG---------ERLDHYTT-----ESFVHVSTA--YSNCRQ 79
S A A L + G E D Y T + S R
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 80 PIIEERFY-----------EPPVNPNH-----------LIQITELLNDDMIDKI---TPG 114
+ E+ + P P+ LI + +L + + K+ TPG
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 115 IVDYWPNTYALTKQVAEDMVRRGGAGMPVAMVRPSID---------LGILFY----SEQF 161
+ T ++ +V + +A S + + +LF+ +
Sbjct: 262 --ELRSYLKGATG-HSQGLV----TAVAIAET-DSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 162 FDPMRKRCPHYL-----------SKMVAVTGDCLKPGVGINSEDRQTLVDNIHVVFHCAA 210
+ P P L S M++++ + E Q V+
Sbjct: 314 Y-PNTSLPPSILEDSLENNEGVPSPMLSIS--------NLTQEQVQDYVN---------- 354
Query: 211 TVRFDAHL----KVAVS-IN--------------------LRATKALLEMAKEMKQLKFF 245
+ ++HL +V +S +N LR KA + Q +
Sbjct: 355 --KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA----PSGLDQSRI- 407
Query: 246 DPMRKR------------CP---HYLSKMVA-VTGDCLKPGVGINSEDRQTLVDNIHVVF 289
P +R P H L + D +K V N++D + I V+
Sbjct: 408 -PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD---I--QIP-VY 460
Query: 290 HCAATVRFDAHLKVAVSINLRATKALLEMAKEMKQLKSFVHVSTAYSNCRQPIIEERFYE 349
T FD +LR + +++ II
Sbjct: 461 D---T--FDGS-------DLRVLSGSI-----SERI------------VDC-IIRL---- 486
Query: 350 PPVN--------PNHLIQITELLNDDMIDKITPGIVDYWPNTYA----LTKQVAEDMVRR 397
PV H I+D+ P + LT + +
Sbjct: 487 -PVKWETTTQFKATH-------------------ILDFGPGGASGLGVLTHRNKD----- 521
Query: 398 GGAGMPVAMVRPSIVIATNKEPIPGWINNHYG 429
G G VR +++A + P ++ YG
Sbjct: 522 -GTG-----VR--VIVAGTLDINP---DDDYG 542
Score = 51.2 bits (122), Expect = 1e-06
Identities = 85/587 (14%), Positives = 165/587 (28%), Gaps = 199/587 (33%)
Query: 59 LDHYTTESFVHVSTA-YSNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVD 117
L H + E + V TA + Q ++E+F + L + TE D D+ T
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQ--LQEQFNK------ILPEPTEGFAAD--DEPT----- 55
Query: 118 YWPNTYALTKQVAEDMVRRGGAGMPVAMVRPSIDLGILFYSEQFFDPMRKRCPHYLSKMV 177
AE + + L Y +P + +
Sbjct: 56 ----------TPAELVGK------------------FLGYVSSLVEP--SKVGQFD---- 81
Query: 178 AVTGDCLKPGVGINSEDRQTLVDN-IHVVFHCAAT---------------VR--FDAHLK 219
L + + + L N IH + AA ++ A +
Sbjct: 82 ----QVLN--LCLTEFENCYLEGNDIHAL---AAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 220 VAVSINLRATKALLEMAKEMK---------Q---LKFFDPMR---KRCPHYLSKMVAVTG 264
+ ++ AL E Q +F+ +R + + ++ +
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 265 DCLKPGVGINSEDRQTLVDNIHVV--FHCAATVRFDAHLK-VAVSINLRATKALLEMAKE 321
+ L + + + ++++ + +L + +S L L
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 322 MKQL----KSFVHVSTAYSNCRQPII----------EERFYEPPVNPNHLIQITELLNDD 367
K L + Q ++ E F+ + + +L
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV------SVRKAITVL--- 303
Query: 368 MIDKITPGIVDYW---------PNTYALTKQVAEDMVRRGGAGMPVAMVRPSIVIATNKE 418
++ PNT +L + ED + G+P M+ + +E
Sbjct: 304 -----------FFIGVRCYEAYPNT-SLPPSILEDSL-ENNEGVPSPMLS---ISNLTQE 347
Query: 419 PIPGWIN--NHYGPT----VIATNKEPIPGWINNHYGPTG-IVAG-----AGLGL-LRSM 465
+ ++N N + P I+ +N G +V+G GL L LR
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISL--------VN---GAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 466 HADPELVADMVPAD----NVINCI--ISAAWNVHQTWNEKKAAGKLVADSLDKNY---PD 516
A L +P N +++ H A+ + D + N
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASP--FHSHLLV-PASDLINKDLVKNNVSFNAK 453
Query: 517 DTDIEIYN---------YVSS---------TQKPIKWKEFMALNEKA 545
D I +Y+ S + P+KW+ KA
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET--TTQFKA 498
Score = 48.1 bits (114), Expect = 1e-05
Identities = 60/360 (16%), Positives = 116/360 (32%), Gaps = 133/360 (36%)
Query: 486 ISAAWNV-HQTWNEKKAAGKLVADSLDKNYPDDTD-----------IEIY----NYVSST 529
+ V ++ A +L + +K P+ T+ E+ YVSS
Sbjct: 16 LEHVLLVPTASFF---IASQL-QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 530 QKPIKWKEFMALNEKAVPEIPSTFAIWAYCFTLNKYKSIHKLYILFLHLLPALIVDTAAK 589
+P K +F + + E + + L IH L AAK
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCY--------LEG-NDIHAL---------------AAK 107
Query: 590 LMGRQPKLLDAYQKIHKFSEVISFFSTQQFTFTNFNTQRLYTKMTEEDRALFNFDMSQLG 649
L+ L +++ K ++ + + +R + K + ALF G
Sbjct: 108 LLQENDTTLVKTKELIK-----NYITARIMA------KRPFDKKSNS--ALFR--AVGEG 152
Query: 650 SFEVHSTL----NTLVSTRSLKLLDAYQKIHKFSEVISFFST-QQF--TFTNFNTQRLYT 702
+ ++ + NT D Y F E+ + T F+ + L
Sbjct: 153 NAQLVAIFGGQGNT----------DDY-----FEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 703 --KMTEEDRALFNFDMSQLDWEKYMFWHIRGI-----RAYLVKDPLSTVPDGIRLRRRLL 755
+ T + +F ++ L+W + + YL+ P+S P I + +
Sbjct: 198 LIRTTLDAEKVFTQGLNILEW-------LENPSNTPDKDYLLSIPIS-CP-LIGV---IQ 245
Query: 756 IAHYL--------------------------LIAALSVL-------FFFLSVRILTLIFF 782
+AHY+ L+ A+++ FF + +T++FF
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Score = 38.9 bits (90), Expect = 0.009
Identities = 38/214 (17%), Positives = 60/214 (28%), Gaps = 104/214 (48%)
Query: 5 LSLENSRQRFEEIFEGEGLSG-ILSL-GLNLNQKSGPISASKNSTASLNSCLPGERLDHY 62
+SL N + + +SG SL GLNL + + + + +P
Sbjct: 368 ISLVNGAKNL--V-----VSGPPQSLYGLNLTLRKAKAPSGLDQSR-----IP------- 408
Query: 63 TTESFVHVSTAYSNCRQPIIEERFYEPPVN-PNH---LIQITELLNDDMIDK-------- 110
+S R+ RF PV P H L+ ++L+N D++
Sbjct: 409 -----------FSE-RKLKFSNRFL--PVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 111 --------------------ITPGIVD-------YWPNTYA------------------- 124
I+ IVD W T
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514
Query: 125 LTKQVAEDMVRRGGAGMPVAMV-----RPSIDLG 153
LT + + G G+ V + P D G
Sbjct: 515 LTHRNKD------GTGVRVIVAGTLDINPDDDYG 542
Score = 35.8 bits (82), Expect = 0.066
Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 55/143 (38%)
Query: 123 Y-ALTKQVA-------EDMVR----RGGAGMPVAMVRPSIDLGILFYSEQFFDPMRKRCP 170
Y AL + E +V RG M VA+ P +LG Y
Sbjct: 1767 YAAL---ASLADVMSIESLVEVVFYRGMT-MQVAV--PRDELGRSNYG------------ 1808
Query: 171 HYLSKMVAVTGDCLKPGVGINSEDRQTLVDNIHVVFHCAATVRFDAHLKVA--------- 221
M+A+ + + E Q +V+ + T +++
Sbjct: 1809 -----MIAINPG--RVAASFSQEALQYVVERV-----GKRTGWL---VEIVNYNVENQQY 1853
Query: 222 -VSINLRATKALLEMAKEMKQLK 243
+ +LRA + + +K K
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQK 1876
Score = 31.2 bits (70), Expect = 1.6
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 18/78 (23%)
Query: 385 ALTKQVAEDMVRRGGAGMPVAMVRPSIVIAT-NKEPIPGWINNHYGPTVIATNKEPIPGW 443
+ V D + R GM + P V A+ ++E + + + GW
Sbjct: 1792 TMQVAVPRDELGRSNYGM--IAINPGRVAASFSQEALQYVVER------VGKRT----GW 1839
Query: 444 I----N-NHYGPTGIVAG 456
+ N N + AG
Sbjct: 1840 LVEIVNYNVENQQYVAAG 1857
Score = 30.8 bits (69), Expect = 2.1
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 21/89 (23%)
Query: 259 MVAVTGDCLKPGVGINSEDRQTLVDNIHVVFHCAATVRFDAHLKVA----------VSIN 308
M+A+ + + E Q +V+ + T +++ + +
Sbjct: 1809 MIAINPG--RVAASFSQEALQYVVERV-----GKRTGWL---VEIVNYNVENQQYVAAGD 1858
Query: 309 LRATKALLEMAKEMKQLK-SFVHVSTAYS 336
LRA + + +K K + + + S
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 5e-09
Identities = 83/601 (13%), Positives = 173/601 (28%), Gaps = 159/601 (26%)
Query: 235 MAKEMKQLKFFDPMRKRCPHYLSKMVAVTGDCLKPGVGINSEDRQTL----VDNIHVVFH 290
M E + ++ + + V DC + + L +D+I
Sbjct: 7 MDFETGEHQY--QYKDILSVFEDAFVD-NFDCKD----VQDMPKSILSKEEIDHI----- 54
Query: 291 CAATVRFDAHLKVAVSINLRATKALLEM--AKEMKQLKSFVH---------VSTAYSN-C 338
+ + T L +K+ + ++ FV + +
Sbjct: 55 ------------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 339 RQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIV----DYWPNTYALTK-QVAED 393
RQP + R Y + L ND V Y AL + + A++
Sbjct: 103 RQPSMMTRMYIEQRDR--------LYND--NQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 394 MVRRG--GAG---MPVAMVRPSIVIATNKEPIPGWIN--NHYGPTVIATNKEPI-----P 441
++ G G+G + + + V I W+N N P + + + P
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 442 GWINNHYGPTGI--VAGAGLGLLRSMHADPELVADMVPADNVINCIISAAWNVHQTWNEK 499
W + + I + LR + ++ NV N + WN
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--------QNA-KAWNAF 262
Query: 500 KAAGKLVADSLDKNYPDDTDIEIYNYVSSTQKPIKWKEFMALNEKAVPEIPSTFAIWAYC 559
+ K++ + K D ++S M L V + + C
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHS------MTLTPDEVKSL---LLKYLDC 313
Query: 560 --FTL-NKYKSIHKLYILFLHLLPALIVDTAAKLMGRQPKLLDAYQKIH--KFSEVISFF 614
L + + + + ++I A+ + D ++ ++ K + +I
Sbjct: 314 RPQDLPREVLTTNPRRL-------SII----AESIRDGLATWDNWKHVNCDKLTTIIES- 361
Query: 615 STQQFTFTNFNTQRLYTKMTEEDRALFNFDM-----------SQLGSFEVHSTLNTLVST 663
S + ++++ + ++F + +V +N L
Sbjct: 362 SLNVLEPAEY--RKMF-----DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK- 413
Query: 664 RSLKLLDAYQKIHKFSEVISFFSTQQ-FTFTNFNTQRLYTKMTEED---RALFNFDMSQL 719
SL ++ K IS S N L+ + + + + D+
Sbjct: 414 YSL--VEKQPK----ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 720 DWEKYMFWHIRGIRAY-LVKDPLSTVPDGIRLRRRLLIAHYLLIAALSVLFF---FLSVR 775
++Y + HI + L I H + ++F FL +
Sbjct: 468 YLDQYFYSHI----GHHLKN-----------------IEHPERMTLFRMVFLDFRFLEQK 506
Query: 776 I 776
I
Sbjct: 507 I 507
Score = 44.5 bits (104), Expect = 1e-04
Identities = 96/679 (14%), Positives = 180/679 (26%), Gaps = 237/679 (34%)
Query: 77 CRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIV----DYWPNTYALTK-QVAE 131
RQP + R Y + L ND V Y AL + + A+
Sbjct: 102 QRQPSMMTRMYIEQRDR--------LYND--NQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 132 DMVRRG--GAG---MPVAMVRPSIDLGILFYSEQFFDPMRKRCPHYLSKMVAVTGDCLKP 186
+++ G G+G + + + + + + +L+ +C P
Sbjct: 152 NVLIDGVLGSGKTWVALDVCL---SYKVQ---CKMDFKI-----FWLN-----LKNCNSP 195
Query: 187 GVGINSEDRQTLVDNIHVVFHCAATVRFDAHLKVAVSINLRATKALLEMAKEMKQLKFFD 246
E ++ + T R D + + I+ + E+++L
Sbjct: 196 ------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--------SIQAELRRL-LKS 240
Query: 247 PMRKRCPHYL-------SKMV-AVTGDCLKPGVGINSEDRQTLVDNIHVVFHCAATVRFD 298
+ C L +K A C + L+ T R
Sbjct: 241 KPYENC--LLVLLNVQNAKAWNAFNLSC------------KILL-----------TTR-F 274
Query: 299 AHLKVAVSINLRATKALLEMAK-----EMKQLKSFVHVSTAYSNCRQPIIEERFYEPP-- 351
+ +S +L + E+K L Y +CR ++ P
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL------KYLDCR---PQD---LPREV 322
Query: 352 --VNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALTKQVAEDMVRRGGAGMPVAMVRP 409
NP L I E + D D W K V D + ++
Sbjct: 323 LTTNPRRLSIIAESIRDG------LATWDNW-------KHVNCDKLTT--------IIES 361
Query: 410 SIVIATNKEPIPGWINNHYGPTVIATNKEPIPG------WINNHYGPTGIVAGAGLGLLR 463
S+ + E + + IP W +
Sbjct: 362 SLNVLEPAE-----YRKMFDRLSVFPPSAHIPTILLSLIWFDVIK--------------- 401
Query: 464 SMHADPELVADMVPADNVINCIISAAWNVHQTWNEKKAAGKLVADSLDKNYPDDTDIEIY 523
+D +V + KL SL + P ++ I I
Sbjct: 402 ---SDVMVVVN-----------------------------KLHKYSLVEKQPKESTISIP 429
Query: 524 N-YVSSTQKPIKWKEFMALNEKAVP--EIPSTFAIWAYCFTLNKYKSIHKLYILFLHLLP 580
+ Y+ K + AL+ V IP TF Y + H+
Sbjct: 430 SIYLELKVKL---ENEYALHRSIVDHYNIPKTFDSDD--LIPPYLDQ----YF-YSHI-- 477
Query: 581 ALIVDTAAKLMGRQPKLLDAYQKIHKFSEVISFFSTQQFTFTNFN--TQRL-YTKMTEED 637
G K ++ +++ F V F +F Q++ +
Sbjct: 478 -----------GHHLKNIEHPERMTLFRMV----------FLDFRFLEQKIRHDSTAWNA 516
Query: 638 RALFNFDMSQLGSFEVHSTLNTLVSTRSLK-LLDAYQKI------HKFSEVISFFSTQQF 690
+ QL ++ + N R + +LD KI K+++++ +
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL------RI 570
Query: 691 TFTNFNTQRLYTKMTEEDR 709
+ + R
Sbjct: 571 ALMAEDEAIFEEAHKQVQR 589
Score = 39.8 bits (92), Expect = 0.004
Identities = 36/289 (12%), Positives = 82/289 (28%), Gaps = 74/289 (25%)
Query: 5 LSLENSRQRFEEIFEGEGLSGILSLGLNLNQKSGPISASKNSTASLNSCLPGERL----- 59
+SL++ E S +L L+ + P + L+ E +
Sbjct: 289 ISLDHHSMTLTP---DEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLA 342
Query: 60 -----DHYTTESFVHVSTAYSNCRQPIIEERFYEPPVNPNHLIQITEL--LNDDMIDKIT 112
H + + + N +P + ++ L I
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD------------RLSVFPPSA--HIP 388
Query: 113 PGIVD-YWPN-TYALTKQVAEDMVRRGGAGMPVAMVRPSIDLGILFYSEQFFDPMRKRCP 170
++ W + + V + + +V + + + ++ +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYS-------LVEKQPKESTISIPSIYLE-LKVKLE 440
Query: 171 HYLS---KMVAVTGDCLKPGVGINSEDRQTL-VDN---IHVVFHCAAT------------ 211
+ + +V D +S+D +D H+ H
Sbjct: 441 NEYALHRSIV----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 212 ---VRF-DAHLKVAVSINLRATKALLEMAKEMKQLKFFDP-MRKRCPHY 255
RF + ++ S A+ ++L ++QLKF+ P + P Y
Sbjct: 497 FLDFRFLEQKIR-HDSTAWNASGSILNT---LQQLKFYKPYICDNDPKY 541
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 48.1 bits (115), Expect = 7e-06
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 38/139 (27%)
Query: 264 GDCLKPGVGINSEDRQTLVDNIHVVFHCAA---TVRFDAHLKVAVSINLRATKALLEMAK 320
D + + ++ +FH A T +D + N + +K LL
Sbjct: 95 ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCL 152
Query: 321 EMKQLKSFVHVSTA--YSNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVD 378
E + F++ S+A Y IE R YE P+N
Sbjct: 153 ERE--IPFLYASSAATYGGRTSDFIESREYEKPLNV------------------------ 186
Query: 379 YWPNTYALTKQVAEDMVRR 397
+ +K + ++ VR+
Sbjct: 187 -----FGYSKFLFDEYVRQ 200
Score = 33.4 bits (77), Expect = 0.23
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 181 GDCLKPGVGINSEDRQTLVDNIHVVFHCAA---TVRFDAHLKVAVSINLRATKALLEMAK 237
D + + ++ +FH A T +D + N + +K LL
Sbjct: 95 ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCL 152
Query: 238 E 238
E
Sbjct: 153 E 153
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 46.9 bits (112), Expect = 1e-05
Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 39/130 (30%)
Query: 284 NIHVVFHCAA---TVRFDAHLKVAVSINLRATKALLEMAKEMKQLKSFVHVSTA--YSNC 338
+ +FH AA T + L + N +A LLE+A+ K ++ S+A Y N
Sbjct: 90 HFDYLFHQAAVSDTTMLNQEL--VMKTNYQAFLNLLEIARSKK--AKVIYASSAGVYGNT 145
Query: 339 RQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALTKQVAEDMVRRG 398
+ P + + E P N Y +K ++ V
Sbjct: 146 KAPNVVGK-NESPENV-----------------------------YGFSKLCMDEFVLSH 175
Query: 399 GAGMPVAMVR 408
+R
Sbjct: 176 SNDNVQVGLR 185
Score = 28.8 bits (65), Expect = 6.9
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 201 NIHVVFHCAA---TVRFDAHLKVAVSINLRATKALLEMAKE 238
+ +FH AA T + L + N +A LLE+A+
Sbjct: 90 HFDYLFHQAAVSDTTMLNQEL--VMKTNYQAFLNLLEIARS 128
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 46.4 bits (111), Expect = 2e-05
Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 38/139 (27%)
Query: 264 GDCLKPGVGINSEDRQTLVDNIHVVFHCAA---TVRFDAHLKVAVSINLRATKALLEMAK 320
D + + ++ +FH A T +D + N + +K LL
Sbjct: 48 ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCL 105
Query: 321 EMKQLKSFVHVSTA--YSNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVD 378
E + F++ S+A Y IE R YE P+N
Sbjct: 106 ERE--IPFLYASSAATYGGRTSDFIESREYEKPLNV------------------------ 139
Query: 379 YWPNTYALTKQVAEDMVRR 397
Y +K + ++ VR+
Sbjct: 140 -----YGYSKFLFDEYVRQ 153
Score = 33.7 bits (78), Expect = 0.22
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 181 GDCLKPGVGINSEDRQTLVDNIHVVFHCAA---TVRFDAHLKVAVSINLRATKALLEMAK 237
D + + ++ +FH A T +D + N + +K LL
Sbjct: 48 ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCL 105
Query: 238 EMK 240
E +
Sbjct: 106 ERE 108
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 46.0 bits (110), Expect = 2e-05
Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 62/168 (36%)
Query: 273 INSEDRQTLVDNIHVVFHCAATVRFDAHLKVAVSI-----NLRATKALLEMAKEMKQLKS 327
ED ++++ V H AAT I N T+ L + E + +
Sbjct: 51 YTLEDLINQLNDVDAVVHLAATRG------SQGKISEFHDNEILTQNLYDACYENN-ISN 103
Query: 328 FVHVSTA--Y-SNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTY 384
V+ ST Y P E+ P Y
Sbjct: 104 IVYASTISAYSDETSLPWNEKE----LPLP-----------------DLM---------Y 133
Query: 385 ALTKQVAEDMVR--RGGAGMPVAMVRPSIVIATNKEPIPGWINNHYGP 430
++K E + G+ + +R + + YG
Sbjct: 134 GVSKLACEHIGNIYSRKKGLCIKNLRFA---------------HLYGF 166
Score = 31.0 bits (71), Expect = 1.3
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 11/54 (20%)
Query: 190 INSEDRQTLVDNIHVVFHCAATVRFDAHLKVAVSI-----NLRATKALLEMAKE 238
ED ++++ V H AAT I N T+ L + E
Sbjct: 51 YTLEDLINQLNDVDAVVHLAATRG------SQGKISEFHDNEILTQNLYDACYE 98
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 45.4 bits (108), Expect = 4e-05
Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 41/145 (28%)
Query: 284 NIHVVFHCAA--TVRFDAHLKVAVSINLRATKALLEMAKEMKQLKSFVHVSTA---YSNC 338
+I +FH A + + + +A +N+ T +LE AK+ + ++ V ST
Sbjct: 62 SIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHR-VEKVVIPSTIGVFGPET 120
Query: 339 RQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALTKQVAEDMV--- 395
+ + P T + +TK AE +
Sbjct: 121 PKNKVPS---ITITRP-----------------RTM---------FGVTKIAAELLGQYY 151
Query: 396 -RRGGAGMPVAMVRPSIVIATNKEP 419
+ G+ V +R +I+ EP
Sbjct: 152 YEKF--GLDVRSLRYPGIISYKAEP 174
Score = 37.3 bits (87), Expect = 0.017
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 201 NIHVVFHCAA--TVRFDAHLKVAVSINLRATKALLEMAKEMKQLKFF 245
+I +FH A + + + +A +N+ T +LE AK+ + K
Sbjct: 62 SIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVV 108
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 42.7 bits (101), Expect = 3e-04
Identities = 28/163 (17%), Positives = 43/163 (26%), Gaps = 43/163 (26%)
Query: 274 NSEDRQTLVDNIHVVFHCAA---TVRFDAHLKVAVSINLRATKALLEMAKEMKQLKSFVH 330
+ +L D VFH A N T L E K K+LK V+
Sbjct: 89 DDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVY 148
Query: 331 VSTAYSNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNT-YALTKQ 389
+ E + + TE T + + ++ Y+++K
Sbjct: 149 SAAG----------CSIAEKTFDD---AKATEE---------TDIVSLHNNDSPYSMSKI 186
Query: 390 VAEDMVR--RGGAGMPVAMVRPSIVIATNKEPIPGWINNHYGP 430
E +P R N YGP
Sbjct: 187 FGEFYSVYYHKQHQLPTVRARFQ---------------NVYGP 214
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 41.6 bits (98), Expect = 6e-04
Identities = 21/151 (13%), Positives = 39/151 (25%), Gaps = 38/151 (25%)
Query: 281 LVDNIHVVFHCAATVRFDAHLKVAVSINLRATKALLEMAKEMKQLKSFVHVST--AYSNC 338
+V + H + + + + N+ L E A+ V S+
Sbjct: 61 MVAGCDGIVHLGG-ISVEKPFEQILQGNIIGLYNLYEAARAHG-QPRIVFASSNHTIGYY 118
Query: 339 RQPI-IEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALTKQVAEDMVR- 396
Q + + P P+ Y ++K E++ R
Sbjct: 119 PQTERLGP---DVPARPD--------------------------GLYGVSKCFGENLARM 149
Query: 397 -RGGAGMPVAMVRPSIVIA--TNKEPIPGWI 424
G A+VR N + W
Sbjct: 150 YFDKFGQETALVRIGSCTPEPNNYRMLSTWF 180
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 38.8 bits (91), Expect = 0.005
Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 37/129 (28%)
Query: 274 NSEDRQTLVDNIHVVFHCAATVRFDAHLK---VAVSINLRATKALLEMAKEMKQLKSFVH 330
N +D + V H AA + + + N+ +L A++ K ++SF +
Sbjct: 92 NLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK-VQSFTY 150
Query: 331 VSTA--Y-SNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALT 387
+++ Y + P +E+ P ++P YA+T
Sbjct: 151 AASSSTYGDHPGLPKVEDT----IGKP-----------------LSP---------YAVT 180
Query: 388 KQVAEDMVR 396
K V E
Sbjct: 181 KYVNELYAD 189
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 38.3 bits (90), Expect = 0.008
Identities = 25/135 (18%), Positives = 41/135 (30%), Gaps = 47/135 (34%)
Query: 273 INSEDRQTLVDNIHVVFHCAATVRFDAHLKVAVSI---------NLRATKALLEMAKEMK 323
+ ++D + + V+H AA V + N+ AT LLE ++
Sbjct: 52 LAADDIKDYLKGAEEVWHIAANPD------VRIGAENPDEIYRNNVLATYRLLEAMRKAG 105
Query: 324 QLKSFVHVSTA--YSNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWP 381
+ V ST+ Y E V P E D I+
Sbjct: 106 -VSRIVFTSTSTVYG------------EAKVIP-----TPE---DYPTHPISL------- 137
Query: 382 NTYALTKQVAEDMVR 396
Y +K E ++
Sbjct: 138 --YGASKLACEALIE 150
Score = 30.9 bits (71), Expect = 1.6
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 15/58 (25%)
Query: 190 INSEDRQTLVDNIHVVFHCAATVRFDAHLKVAVSI---------NLRATKALLEMAKE 238
+ ++D + + V+H AA V + N+ AT LLE ++
Sbjct: 52 LAADDIKDYLKGAEEVWHIAANPD------VRIGAENPDEIYRNNVLATYRLLEAMRK 103
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 37.7 bits (88), Expect = 0.009
Identities = 23/151 (15%), Positives = 40/151 (26%), Gaps = 38/151 (25%)
Query: 281 LVDNIHVVFHCAATVRFDAHLKVAVSINLRATKALLEMAKEMKQLKSFVHVSTA---YSN 337
LV + + H V + + N+ L E A+ + V S+
Sbjct: 60 LVKDCDGIIHLGG-VSVERPWNDILQANIIGAYNLYEAARNLG-KPRIVFASSNHTIGYY 117
Query: 338 CRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALTKQVAEDMVR- 396
R I+ E P P + Y L+K ED+
Sbjct: 118 PRTTRIDT---EVPRRP-----------------DSL---------YGLSKCFGEDLASL 148
Query: 397 -RGGAGMPVAMVRPSIVIATNKEP--IPGWI 424
+ +R K+ + W+
Sbjct: 149 YYHKFDIETLNIRIGSCFPKPKDARMMATWL 179
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 37.8 bits (88), Expect = 0.012
Identities = 25/197 (12%), Positives = 53/197 (26%), Gaps = 63/197 (31%)
Query: 248 MRKRCPHYLSKMVAVTGDCLKPGVGINSEDRQTLV---DNIHVVFHCAA-----TVRFDA 299
+R + D I S + + V + +A + +
Sbjct: 80 IRSSFGYINGDFQTFALD-------IGSIEYDAFIKADGQYDYVLNLSALKHVRSEKDPF 132
Query: 300 HLKVAVSINLRATKALLEMAKEMKQLKSFVHVST--AYSNCRQPIIEERFYEPPVNPNHL 357
L + +N+ T ++ + + K + VST A NP
Sbjct: 133 TLMRMIDVNVFNTDKTIQQSIDAG-AKKYFCVSTDKA-----------------ANP--- 171
Query: 358 IQITELLNDDMIDKITPGIVDYWPNTYALTKQVAEDMVRRGGAGMPVAMVRPSIVIATNK 417
N +K++ E + R + ++ R + V ++
Sbjct: 172 -----------------------VNMMGASKRIMEMFLMRKSEEIAISTARFANVAFSDG 208
Query: 418 EPIPGWIN--NHYGPTV 432
+ G+ P V
Sbjct: 209 SLLHGFNQRIQKNQPIV 225
Score = 32.4 bits (74), Expect = 0.60
Identities = 11/89 (12%), Positives = 27/89 (30%), Gaps = 15/89 (16%)
Query: 165 MRKRCPHYLSKMVAVTGDCLKPGVGINSEDRQTLV---DNIHVVFHCAA-----TVRFDA 216
+R + D I S + + V + +A + +
Sbjct: 80 IRSSFGYINGDFQTFALD-------IGSIEYDAFIKADGQYDYVLNLSALKHVRSEKDPF 132
Query: 217 HLKVAVSINLRATKALLEMAKEMKQLKFF 245
L + +N+ T ++ + + K+F
Sbjct: 133 TLMRMIDVNVFNTDKTIQQSIDAGAKKYF 161
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 37.6 bits (87), Expect = 0.015
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 273 INSEDRQTLVDNIHVVFHCAATVRFDAHLKVAVSINLRATKALLEMAKEMKQLKSFVHVS 332
E+ ++ + + H A R + H K N+ +L++ + + + S
Sbjct: 35 TKEEELESALLKADFIVHLAGVNRPE-HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS 93
Query: 333 TAYSNCRQP 341
+ + P
Sbjct: 94 SIQATQDNP 102
Score = 34.9 bits (80), Expect = 0.082
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 190 INSEDRQTLVDNIHVVFHCAATVRFDAHLKVAVSINLRATKALLEMAKEMKQLKFF 245
E+ ++ + + H A R + H K N+ +L++ +
Sbjct: 35 TKEEELESALLKADFIVHLAGVNRPE-HDKEFSLGNVSYLDHVLDILTRNTKKPAI 89
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 36.8 bits (86), Expect = 0.021
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 284 NIHVVFHCAATVRFDA---HLKVAVSINLRATKALLEMAKEMKQLKS-FVHVSTAY 335
HV+ HCAA R D A +N+ A+ L AKE + + +++S+ Y
Sbjct: 60 QPHVIVHCAAERRPDVVENQPDAASQLNVDASGNL---AKEAAAVGAFLIYISSDY 112
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 35.3 bits (82), Expect = 0.056
Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 35/118 (29%)
Query: 284 NIHVVFHCAA--TVRFDAHLKVAVSINLRATKALLEMAKEMKQLKSFVHVSTA---YSNC 338
I ++ AA + + + A +N+ + +L +AK K++K S+
Sbjct: 68 KITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKA-KKIKKIFWPSSIAVFGPTT 126
Query: 339 RQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALTKQVAEDMVR 396
+ + + P T Y ++KQ E
Sbjct: 127 PKENTPQ---YTIMEP-----------------STV---------YGISKQAGERWCE 155
Score = 31.1 bits (71), Expect = 1.1
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 201 NIHVVFHCAA--TVRFDAHLKVAVSINLRATKALLEMAKEMKQLKFF 245
I ++ AA + + + A +N+ + +L +AK K K F
Sbjct: 68 KITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIF 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.17
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 21/51 (41%)
Query: 498 EKKAAGKLVADSLDKNYPDDTDIEIYNYVSSTQKPIKWKEFMALNEKAVPE 548
EK+A KL A SL K Y DD+ P AL KA E
Sbjct: 18 EKQALKKLQA-SL-KLYADDS------------AP-------ALAIKATME 47
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 33.5 bits (77), Expect = 0.19
Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 42/164 (25%)
Query: 271 VGINSEDRQTLVDNIHVVFHCAATVRFDAHLKVAVSINLRATKALLEMAKEMKQLKSFVH 330
V ED +I V A + K + I+L ++ A++ +K F+
Sbjct: 71 VANLEEDFSHAFASIDAVVFAAGSGPHTGADK-TILIDLWGAIKTIQEAEKRG-IKRFIM 128
Query: 331 VSTAYSNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALTKQV 390
VS+ + +P P ++ Y + K++
Sbjct: 129 VSSVGTV-----------DPDQGPMNMRH------------------------YLVAKRL 153
Query: 391 AEDMVRRGGAGMPVAMVRPSIVI---ATNKEPIPGWINNHYGPT 431
A+D ++R + + +VRP + +T K + +
Sbjct: 154 ADDELKR--SSLDYTIVRPGPLSNEESTGKVTVSPHFSEITRSI 195
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 33.4 bits (77), Expect = 0.25
Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 49/135 (36%)
Query: 274 NSEDRQTLVDNIHVVFHCAATVRFDAHLKVAVSI---------NLRATKALLEMAKEMKQ 324
+ + ++ + V H AA V SI N+ +L AK +
Sbjct: 90 DLTTCEQVMKGVDHVLHQAALGS------VPRSIVDPITTNATNITGFLNILHAAKNAQ- 142
Query: 325 LKSFVHVSTA--Y-SNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWP 381
++SF + +++ Y + P +EE NP ++P
Sbjct: 143 VQSFTYAASSSTYGDHPALPKVEEN----IGNP-----------------LSP------- 174
Query: 382 NTYALTKQVAEDMVR 396
YA+TK V E +
Sbjct: 175 --YAVTKYVNEIYAQ 187
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 32.9 bits (76), Expect = 0.32
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 284 NIHVVFHCAATVRFDA---HLKVAVSINLRATKALLEMAKEMKQLKS-FVHVSTAY 335
+VV +CAA D +A IN K L A + + V +ST Y
Sbjct: 63 KPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNL---AAAAYSVGAEIVQISTDY 115
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 32.9 bits (76), Expect = 0.37
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 284 NIHVVFHCAATVRFDA---HLKVAVSINLRATKALLEMAKEMKQLKS-FVHVSTAY 335
H++ HCAA + D +A IN + + A + + + V++ST Y
Sbjct: 56 RPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNV---AVASQLVGAKLVYISTDY 108
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 32.0 bits (73), Expect = 0.76
Identities = 21/195 (10%), Positives = 41/195 (21%), Gaps = 50/195 (25%)
Query: 284 NIHVVFHCAA------TVRFDAHLKVAVSINLRATKALLEMAKEMKQLKSFVHVSTA--Y 335
V H ++ + N+ T +L KE + V + T Y
Sbjct: 100 EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEY 159
Query: 336 SNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWP-NTYALTKQVAEDM 394
I E + N + Y L+K
Sbjct: 160 GTPNIDIEEG---YITITHNGRTDTLPY--------------PKQASSFYHLSKVHDSHN 202
Query: 395 VRRGGA--GMPVAMVRPSIVIATNKEPI-------PGWINNHYGPTVI-------ATNK- 437
+ G+ + +V + + T + A
Sbjct: 203 IAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHP 262
Query: 438 -------EPIPGWIN 445
G+++
Sbjct: 263 LTVYGKGGQTRGYLD 277
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 31.1 bits (71), Expect = 1.2
Identities = 13/51 (25%), Positives = 18/51 (35%)
Query: 282 VDNIHVVFHCAATVRFDAHLKVAVSINLRATKALLEMAKEMKQLKSFVHVS 332
+ V H A+ V F V+ + T L A +K FV S
Sbjct: 81 IKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS 131
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 31.3 bits (72), Expect = 1.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 308 NLRATKALLEMAKEMKQLKSFVHVST 333
N+ T LLE + FVHVST
Sbjct: 102 NVIGTYTLLESIRRENPEVRFVHVST 127
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 30.9 bits (70), Expect = 1.4
Identities = 23/150 (15%), Positives = 40/150 (26%), Gaps = 44/150 (29%)
Query: 274 NSEDRQTLVDNIHVVFHCAATVRFDAHLKVAVSINLRATKALLEMAKEMKQLKSFVHVST 333
+D + V F C T R A + V ++ E+AK K F +S+
Sbjct: 74 KLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGG-CKHFNLLSS 132
Query: 334 AYSNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALTKQVAED 393
+ + + Y K E
Sbjct: 133 KGA----------------DKSS------------------------NFLYLQVKGEVEA 152
Query: 394 MVRRGGAGMP-VAMVRPSIVIATNKEPIPG 422
V ++ RP +++ +E PG
Sbjct: 153 KVEE--LKFDRYSVFRPGVLLCDRQESRPG 180
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 30.8 bits (70), Expect = 1.6
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 15/102 (14%)
Query: 262 VTGDCLKPGVGINSEDRQTLVDN-IHVVFHCAA--TVRFDAHLKVAVSINLRATKALLEM 318
D + + LV+ V+FH AA + + INL T+ L +
Sbjct: 69 RAADLS------APGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDA 122
Query: 319 AKE----MKQLKSFVHVSTA--YSNCRQPIIEERFYEPPVNP 354
+ V S+ + I + F+ P+
Sbjct: 123 IRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTS 164
Score = 28.5 bits (64), Expect = 9.1
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 179 VTGDCLKPGVGINSEDRQTLVDN-IHVVFHCAA--TVRFDAHLKVAVSINLRATKALLEM 235
D + + LV+ V+FH AA + + INL T+ L +
Sbjct: 69 RAADLS------APGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDA 122
Query: 236 AKE 238
+
Sbjct: 123 IRI 125
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 30.6 bits (70), Expect = 1.8
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 19/61 (31%)
Query: 284 NIHVVFHCAATVRFDAHLKVAV--SI---------NLRATKALLEMAKEMKQLKSFVHVS 332
FH A +VA+ SI N+ T LLE ++ + ++ S
Sbjct: 73 MPDSCFHLAG--------QVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS 124
Query: 333 T 333
T
Sbjct: 125 T 125
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for
structural genomics of infec diseases, csgid, TIM
beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni}
Length = 357
Score = 30.8 bits (70), Expect = 1.9
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 115 IVDYWPNTYALTKQVAEDMVRRGGAGMPVAMVRPSIDLGI 154
+ + +AL + V GG+G + ++ ++ G+
Sbjct: 242 SQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSYGV 281
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 29.8 bits (68), Expect = 3.1
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 284 NIHVVFHCAA-T-VRFDA---HLKVAVSINLRATKALLEMAKEMKQLKS-FVHVSTAY 335
V+ + AA T V D ++A +N + +A+ AK + + VH ST Y
Sbjct: 54 RPDVIVNAAAHTAV--DKAESEPELAQLLNATSVEAI---AKAANETGAWVVHYSTDY 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.411
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,202,610
Number of extensions: 762658
Number of successful extensions: 1858
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1821
Number of HSP's successfully gapped: 60
Length of query: 782
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 681
Effective length of database: 3,881,772
Effective search space: 2643486732
Effective search space used: 2643486732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.6 bits)