RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16243
(782 letters)
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 57.4 bits (138), Expect = 2e-09
Identities = 41/286 (14%), Positives = 78/286 (27%), Gaps = 59/286 (20%)
Query: 273 INSEDRQTLVDNIHVVFHCAATV---RFDAHLKVAVSINLRATKALLEMAKEMKQLKSFV 329
IN + + L + ++H A+ + + + N T +L +AK + +
Sbjct: 54 INHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--ARLL 111
Query: 330 HVSTA---YSNCRQPIIEERFYE-PPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYA 385
ST+ P E+ + P+ P Y
Sbjct: 112 LASTSEVYGDPEVHPQSEDYWGHVNPIGPR--------------------------ACYD 145
Query: 386 LTKQVAEDMVR--RGGAGMPVAMVRPSIVIATNKEPIPGWINNHYGPTVIATNKEPIPGW 443
K+VAE M G+ V + R N +GP + + + +
Sbjct: 146 EGKRVAETMCYAYMKQEGVEVRVARIF---------------NTFGPRMHMNDGRVVSNF 190
Query: 444 INN-HYGPTGIVAGAGLGLLRSMHAD-----PELVADMVPADNVINCIISAAWNVHQTWN 497
I G V G+G + + + + V +
Sbjct: 191 ILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQL 250
Query: 498 EKKAAGKLVADSLDKNYPDDTDIEIYNYVSSTQKPIKWKEFMALNE 543
K G DD + + + + W+ + L E
Sbjct: 251 IKNLVGSGSEIQFLSEAQDDPQKRKPD-IKKAKLMLGWEPVVPLEE 295
Score = 30.4 bits (68), Expect = 0.72
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 190 INSEDRQTLVDNIHVVFHCAATV---RFDAHLKVAVSINLRATKALLEMAKEMK 240
IN + + L + ++H A+ + + + N T +L +AK +
Sbjct: 54 INHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG 107
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 44.4 bits (104), Expect = 3e-05
Identities = 37/175 (21%), Positives = 56/175 (32%), Gaps = 42/175 (24%)
Query: 284 NIHVVFHCAATVRFDAHLK---VAVSINLRATKALLEMAKEM--------KQLKSFVHVS 332
V H AA D + + N+ T ALLE+A++ K F H+S
Sbjct: 73 QPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHIS 132
Query: 333 T--AYSNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALTKQV 390
T Y + P E P+ +P Y+ +K
Sbjct: 133 TDEVYGDLPHPDEVENSVTLPLFTE----------TTAYAPSSP---------YSASKAS 173
Query: 391 AEDMVR--RGGAGMPVAMVRPSIVIATNKEPIPGWINNHYGPTVI--ATNKEPIP 441
++ +VR R G+P + S P P VI A +P+P
Sbjct: 174 SDHLVRAWRRTYGLPTIVTNCSNNYG------PYHFPEKLIPLVILNALEGKPLP 222
Score = 29.3 bits (65), Expect = 1.7
Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 24/166 (14%)
Query: 121 NTYALTKQVAEDMVR--RGGAGMPVAMVRPSIDLGILFYSEQFFDPMRKRCPHYLSKMVA 178
+ Y+ +K ++ +VR R G+P + S + G + E+ + +
Sbjct: 165 SPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY 224
Query: 179 VTGDCLKPGVGINSEDRQTLVDNIHVVFHCAATVRFDAHLKVAVSINLRATKALLEMAKE 238
GD ++ D ++V H A K + N+ E
Sbjct: 225 GKGDQIR--------------DWLYVEDHARALHMVVTEGKAGETYNIGGHN---EKKNL 267
Query: 239 MKQLKFFDPMRKRCPHYLSKMVAVTGDCLKPGVGINSEDRQTLVDN 284
D + + P S +T +PG DR+ +D
Sbjct: 268 DVVFTICDLLDEIVPKATSYREQITYVADRPG-----HDRRYAIDA 308
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
epimerase/reductase (GDP-fucose synthetase) {Escherichia
coli [TaxId: 562]}
Length = 315
Score = 42.9 bits (100), Expect = 8e-05
Identities = 34/278 (12%), Positives = 76/278 (27%), Gaps = 45/278 (16%)
Query: 283 DNIHVVFHCAATV----RFDAHLKVAVSINLRATKALLEMAKEMKQLKSFVHVSTA---Y 335
+ I V+ AA V + + + N+ ++ A + + + + ++
Sbjct: 53 ERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-VNKLLFLGSSCIYP 111
Query: 336 SNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALTKQVAEDMV 395
+QP+ E + + P + YA+ K +
Sbjct: 112 KLAKQPMAESELLQGTLEPTN-------------------------EPYAIAKIAGIKLC 146
Query: 396 R--RGGAGMPVAMVRPSIVIATNKEP-------IPGWINNHYGPTVIATNKEPIPGWINN 446
G V P+ + + IP + + T + G
Sbjct: 147 ESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTP 206
Query: 447 HYGPTGIVAGAGLGLLRSMHADPELVADMVPADNVINCIISAAWNVHQTWNE-KKAAGKL 505
+ A + A + + P + IN + + K G
Sbjct: 207 MREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYK 266
Query: 506 VADSLDKNYPDDTDIEIYNYVSSTQKPIKWKEFMALNE 543
D + PD T ++ + + + W ++L
Sbjct: 267 GRVVFDASKPDGTPRKLLD--VTRLHQLGWYHEISLEA 302
Score = 32.2 bits (72), Expect = 0.21
Identities = 20/156 (12%), Positives = 38/156 (24%), Gaps = 35/156 (22%)
Query: 67 FVHVSTA---YSNCRQPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTY 123
+ + ++ +QP+ E + + P + Y
Sbjct: 101 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTN-------------------------EPY 135
Query: 124 ALTKQVAEDMVR--RGGAGMPVAMVRPSIDLGILFYSEQFFDPMRKRCPHYLSKMVAVTG 181
A+ K + G V P+ G F P L +
Sbjct: 136 AIAKIAGIKLCESYNRQYGRDYRSVMPTNLYG----PHDNFHPSNSHVIPALLRRFHEAT 191
Query: 182 DCLKPGVGINSEDRQTLVDNIHVVFHCAATVRFDAH 217
P V + + +HV AA++
Sbjct: 192 AQKAPDVVVWGSGTPMR-EFLHVDDMAAASIHVMEL 226
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 40.2 bits (93), Expect = 7e-04
Identities = 22/153 (14%), Positives = 38/153 (24%), Gaps = 46/153 (30%)
Query: 282 VDNIHVVFHCAATVRFDAHLKVAVSINLRATKALLEMAKE--MKQLKSFVHVSTAYSNCR 339
D ++ + + + ++ T LLE + +++ F ST+
Sbjct: 79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTS----- 133
Query: 340 QPIIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALTKQVAEDMVR--R 397
E + P E +P YA+ K A + R
Sbjct: 134 -----ELYGLVQEIP-----QKE---TTPFYPRSP---------YAVAKLYAYWITVNYR 171
Query: 398 GGAGMPVAMVRPSIVIATNKEPIPGWINNHYGP 430
GM NH P
Sbjct: 172 ESYGMYACNGILF---------------NHESP 189
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 347
Score = 31.9 bits (71), Expect = 0.32
Identities = 20/166 (12%), Positives = 37/166 (22%), Gaps = 31/166 (18%)
Query: 284 NIHVVFHCAATVRFDAHLKVAVSINLRATKALLEMAKEMKQLKS--FVHVSTAYSNCRQP 341
I+ + + + ++ T LL+ K + S F ST+
Sbjct: 82 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTS------- 134
Query: 342 IIEERFYEPPVNPNHLIQITELLNDDMIDKITPGIVDYWPNTYALTKQVAEDMVR--RGG 399
E + + P E +P Y K A +V R
Sbjct: 135 ---ELYGKVQEIP-----QKE---TTPFYPRSP---------YGAAKLYAYWIVVNFREA 174
Query: 400 AGMPVAMVRPSIVIATNKEPIPGWINNHYGPTVIATNKEPIPGWIN 445
+ + + I + N
Sbjct: 175 YNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGN 220
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic
enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Length = 298
Score = 30.4 bits (68), Expect = 0.88
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 385 ALTKQVAEDMVRRGGAGMPVAMVRPSIVIATNKEPIPGWINNH--------YGPTVIATN 436
A T+Q+ +DM + A+ P+ E + + + P + +
Sbjct: 116 AFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSG 175
Query: 437 KEPIPGWINNHYGPTGIVAGAGLGLLRSMHAD-----PELVADMVPADN 480
+ PG NN Y G+ G L+ + D E++A V +N
Sbjct: 176 QTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEEN 224
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 29.9 bits (66), Expect = 1.3
Identities = 15/164 (9%), Positives = 41/164 (25%), Gaps = 10/164 (6%)
Query: 382 NTYALTKQVAEDMVR--RGGAGMPVAMVRPSIVIATNKEPIPGWINNHYGPTVIATNKEP 439
+ + L K E++ + G+ + R + G A ++
Sbjct: 160 DAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPF-----GTWKGGREKAPAAFCRKA 214
Query: 440 IPGWINNHYGPTGIVAGAGLGLLRSMHADPELVADMVPADNVINCIISAAWNVHQTWNEK 499
G+ + + L +N ++++
Sbjct: 215 QTSTDRFEMWGDGLQTRSFTF--IDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMV 272
Query: 500 KAAGKLVADSLDKNYPDDTDIEIYNYVSSTQKPIKWKEFMALNE 543
+ + P+ + + ++ + W M L E
Sbjct: 273 LSFEEKKLPIHHIPGPEGVRGRNSD-NNLIKEKLGWAPNMRLKE 315
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Length = 308
Score = 29.6 bits (66), Expect = 1.6
Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 12/108 (11%)
Query: 385 ALTKQVAEDMVRRGGAGMPVAMVRPSIVIATNKEPIPGWINNHYG-------PTVIATNK 437
A ++V M + A+ P+ E + N P
Sbjct: 116 AFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNGH 175
Query: 438 EPIPGWINNHYGPTGIVAGAGLGLLRSMHAD-----PELVADMVPADN 480
PG NN Y G+ G L +R + D + VA V D+
Sbjct: 176 TYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDS 223
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme)
{Thermotoga maritima [TaxId: 2336]}
Length = 222
Score = 28.9 bits (64), Expect = 1.8
Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 27/127 (21%)
Query: 402 MPVAMVRPSIV-IATNKEPIPGWINNHYGPTVIATNKEPIPGWINNHYGPTGIVAGAGLG 460
+ +P I +A I + G ++AT + P +NN GI G
Sbjct: 115 IKKMSRKPVIFALANPVPEIDPELAREAGAFIVATGRSDHPNQVNNLLAFPGI----MKG 170
Query: 461 LLRSMHADPELVADMVPADNVINCIISAAWNVHQTWNEKKAAGKLVADSLDKNYPDDTDI 520
+ + N ++SA +A + ++ P+ D+
Sbjct: 171 AVEKR------------SKITKNMLLSAV----------EAIARSCEPEPERIIPEAFDM 208
Query: 521 EIYNYVS 527
+++ V
Sbjct: 209 KVHLNVY 215
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 193
Score = 27.2 bits (60), Expect = 6.0
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 18/101 (17%)
Query: 101 ELLNDDMIDKITPGIVDYWPNTYALTKQVAEDMVRRGGAGMPVAMVRPSIDLGILFYSEQ 160
E L + I IV T+A AE + A +G+L Y +Q
Sbjct: 55 EDLYTPVNGSI--VIVRAGKITFAEKVANAESL----NA------------IGVLIYMDQ 96
Query: 161 FFDPMRKRCPHYLSKMVAVTGDCLKPGVGINSEDRQTLVDN 201
P+ + TGD PG + + +
Sbjct: 97 TKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRS 137
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 169
Score = 26.9 bits (59), Expect = 6.7
Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 4/101 (3%)
Query: 395 VRRGGAGMPVAMVRPSIVIATNKEPIPGWI-NNHYGPTVIATNKEPIPGWINNHYGPTGI 453
V + + V S +A I H + +++ I + +
Sbjct: 53 VIKNAGNIVDDGVIRSAAVAIYALGDNEIIIVGHTDCGMARLDEDLIVSRMRELGVEEEV 112
Query: 454 VAGAGLGLLRSMHADPELVADMVPADNVINC-IISAAWNVH 493
+ + +L + + E V + V + + +I + VH
Sbjct: 113 IENFSIDVLNPVGDEEENVIEGV--KRLKSSPLIPESIGVH 151
>d2ex0a1 c.87.1.9 (A:26-412)
Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella
multocida [TaxId: 747]}
Length = 387
Score = 27.5 bits (61), Expect = 7.1
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 561 TLNKYKSIHKLYILFLHLLPALIVDTAAKLMGRQPKLLDAYQKIHKFSEVISFFSTQQ-- 618
T+ +Y + + H L + A L + L + YQK+ ++ QQ
Sbjct: 158 TIARY-VWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKM-DWTAYQQLTPEQQAF 215
Query: 619 -FTFTNFNTQRL 629
T FN +
Sbjct: 216 YLTLVGFNDEVK 227
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic
enzyme {Human (Homo sapiens) [TaxId: 9606]}
Length = 294
Score = 27.3 bits (60), Expect = 8.5
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 428 YGPTVIATNKEPIPGWINNHYGPTGIVAGAGLGLLRSMH-----ADPELVADMVPADN 480
+GP + + PG NN Y G+ L R + + + + +
Sbjct: 170 FGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEE 227
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.411
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,977,177
Number of extensions: 143882
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 20
Length of query: 782
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 690
Effective length of database: 1,144,436
Effective search space: 789660840
Effective search space used: 789660840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)