Query psy16244
Match_columns 86
No_of_seqs 131 out of 1030
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 16:30:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00860 LIC Cation transport 99.9 1.3E-26 2.8E-31 166.1 7.2 85 1-85 40-125 (459)
2 KOG3646|consensus 99.9 8.2E-27 1.8E-31 164.7 2.9 86 1-86 36-123 (486)
3 KOG3645|consensus 99.9 6.8E-26 1.5E-30 162.0 5.9 83 2-84 40-124 (449)
4 PF02931 Neur_chan_LBD: Neurot 99.9 1E-23 2.2E-28 137.3 5.9 83 1-83 10-94 (217)
5 KOG3643|consensus 99.7 1.8E-18 4E-23 122.2 2.0 83 1-86 44-130 (459)
6 KOG3642|consensus 99.6 1.8E-15 3.9E-20 107.5 3.3 83 1-84 53-136 (466)
7 KOG3644|consensus 99.5 1.5E-14 3.2E-19 104.0 6.5 85 2-86 51-140 (457)
8 PF11455 DUF3018: Protein of 33.6 15 0.00034 20.0 0.2 12 65-76 16-27 (65)
9 PF06554 Olfactory_mark: Olfac 30.8 21 0.00045 22.3 0.5 11 67-77 71-81 (151)
10 PF11324 DUF3126: Protein of u 28.8 1E+02 0.0023 16.6 2.9 28 13-40 27-55 (63)
11 COG0339 Dcp Zn-dependent oligo 25.3 75 0.0016 25.0 2.6 24 60-83 379-402 (683)
12 PF10184 DUF2358: Uncharacteri 21.3 1.3E+02 0.0028 17.5 2.7 21 49-69 86-107 (113)
No 1
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=99.93 E-value=1.3e-26 Score=166.09 Aligned_cols=85 Identities=31% Similarity=0.610 Sum_probs=81.2
Q ss_pred CCCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244 1 MGQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY 79 (86)
Q Consensus 1 ~~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ 79 (86)
++||+.+||+.++++++|.++ .+.+|+++||++|++++++|++++|+|+||+|||++|+|++.+.++.++||+||++++
T Consensus 40 ~~Yd~~~RPv~~~~~v~V~~~i~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~~~~~IW~PDi~l~ 119 (459)
T TIGR00860 40 KNYDARVRPVFGGPPVTVSFNLFLRSIMDVDEKNMDYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTPDDSIWVPDIFFY 119 (459)
T ss_pred hcCCCCcCCCCCCCCEEEEEEEEEEEecccccccceEEEeeeeeeEEeCCccCCCCccCCCceeccccccccccCcEEee
Confidence 489999999944899999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcC
Q psy16244 80 NKFTVW 85 (86)
Q Consensus 80 ns~d~~ 85 (86)
|++++.
T Consensus 120 N~~~~~ 125 (459)
T TIGR00860 120 NEKDAR 125 (459)
T ss_pred cCcccc
Confidence 999864
No 2
>KOG3646|consensus
Probab=99.93 E-value=8.2e-27 Score=164.73 Aligned_cols=86 Identities=35% Similarity=0.713 Sum_probs=82.7
Q ss_pred CCCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEE
Q psy16244 1 MGQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVL 78 (86)
Q Consensus 1 ~~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i 78 (86)
.|||+.-||+.| ++|++|.++ .|+||+++|||+|.+++++|+.++|+|-+|+|+|++|+||+.+.++.++||+||+.+
T Consensus 36 ~nYn~leRPV~N~Sepl~V~~~~~lqQIidVDEKnQvl~~naWl~y~W~D~~LrW~pseygnI~dvR~p~~~iWkPDVLL 115 (486)
T KOG3646|consen 36 ENYNPLERPVANESEPLQVKLGVFLQQIIDVDEKNQVLSVNAWLQYQWNDYKLRWDPSEYGNITDIRFPGGNIWKPDVLL 115 (486)
T ss_pred hhcCccCCCccccCcCEEEEeeeeEeccCCCcccccchhhhhhhheeehhhhhccCHHHhCCceeeccCCccccCCceec
Confidence 489999999999 899999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcCC
Q psy16244 79 YNKFTVWQ 86 (86)
Q Consensus 79 ~ns~d~~~ 86 (86)
|||+|.=|
T Consensus 116 YNSade~F 123 (486)
T KOG3646|consen 116 YNSADEQF 123 (486)
T ss_pred cccccccC
Confidence 99998643
No 3
>KOG3645|consensus
Probab=99.92 E-value=6.8e-26 Score=162.03 Aligned_cols=83 Identities=41% Similarity=0.814 Sum_probs=80.1
Q ss_pred CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244 2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY 79 (86)
Q Consensus 2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ 79 (86)
+|++.+||+.+ +.+++|.++ .+.+|++|||++|.+++++|+.+.|+|+||+|||++|+||+.+.++.++||+||+.++
T Consensus 40 ~Y~~~vrPv~~~~~~v~V~~~~~l~qii~VdE~~q~~t~~~wl~~~W~D~~L~Wnp~~~~~I~~i~vp~~~IW~Pdi~l~ 119 (449)
T KOG3645|consen 40 KYNKLVRPVKNSSDPVTVNFGLVLYQIIEVDEKNQIMTTNVWLKQSWTDERLSWDPSDYGGITKIRVPSSKIWLPDIVLY 119 (449)
T ss_pred cccccCCccCCCCCcEEEEEEEEEEEEEeeccccceEEEEEEeeeEEeccCcccChHHcCCceEEEecHHHcCcCcEEEE
Confidence 69999999988 779999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCc
Q psy16244 80 NKFTV 84 (86)
Q Consensus 80 ns~d~ 84 (86)
|++++
T Consensus 120 N~~~~ 124 (449)
T KOG3645|consen 120 NNADG 124 (449)
T ss_pred ecccc
Confidence 98765
No 4
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=99.89 E-value=1e-23 Score=137.34 Aligned_cols=83 Identities=27% Similarity=0.623 Sum_probs=70.6
Q ss_pred CCCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEE
Q psy16244 1 MGQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVL 78 (86)
Q Consensus 1 ~~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i 78 (86)
.+||+.+||..+ +.++.|.++ .+.+|.+++|.++++++.+++.+.|+|+||+|+|++|+|++.+.++.+.||+|++++
T Consensus 10 ~~Yd~~~rP~~~~~~~~~V~v~~~~~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v~~~~iW~P~l~~ 89 (217)
T PF02931_consen 10 DNYDKRVRPVKNEGDPTNVSVSIYLNSIVEVDESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRVPSSQIWTPDLYF 89 (217)
T ss_dssp HTS-STS-SSSSSSS-EEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEEEGGGS----EEE
T ss_pred hcCCCCCCCCCCCCCeEEEEEEEEHhheeccccccchhhhhhhhceeccccccccChhhccCcccccccccceEeccccc
Confidence 379999999855 899999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCC
Q psy16244 79 YNKFT 83 (86)
Q Consensus 79 ~ns~d 83 (86)
+|+.+
T Consensus 90 ~n~~~ 94 (217)
T PF02931_consen 90 YNSVS 94 (217)
T ss_dssp TTBSS
T ss_pred ccccc
Confidence 99654
No 5
>KOG3643|consensus
Probab=99.72 E-value=1.8e-18 Score=122.16 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeC---CCCcccCCE
Q psy16244 1 MGQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVP---SDHIWRPDI 76 (86)
Q Consensus 1 ~~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~---~~~iW~Pdi 76 (86)
+|||.++||..+|+|+.|.+. .+.+|-.|.|.+|.+++.++++|.|+|+||+|+ ..++..+.+. .+++|+||.
T Consensus 44 ~~yd~~lRP~fGG~pv~Vgi~i~VaSI~~vSEV~MDyTlt~y~rq~W~D~RLay~---~~~~~slTl~~~~~~~LWvPDT 120 (459)
T KOG3643|consen 44 NGYDYRLRPNFGGPPVDVGITIHVASIDAVSEVNMDYTLTMYLRQTWRDPRLAYS---SKNIDSLTLDVRYVDKLWVPDT 120 (459)
T ss_pred hcCceecCCCCCCCCeEEEEEEEEeeechhccccchhhhhhhhhhhhcCcccccC---CCCCceEEEchhhhhccccCce
Confidence 489999999999999999999 999999999999999999999999999999998 4566777775 689999999
Q ss_pred EEEecCCcCC
Q psy16244 77 VLYNKFTVWQ 86 (86)
Q Consensus 77 ~i~ns~d~~~ 86 (86)
++.|+..++|
T Consensus 121 ff~N~KkSf~ 130 (459)
T KOG3643|consen 121 FFPNSKKSFF 130 (459)
T ss_pred ecccCccccc
Confidence 9999988765
No 6
>KOG3642|consensus
Probab=99.56 E-value=1.8e-15 Score=107.55 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=71.5
Q ss_pred CCCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244 1 MGQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY 79 (86)
Q Consensus 1 ~~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ 79 (86)
+|||+++||..++.|+.|++. ++..+..|.+.+++++++++++|+|.|+||.++... ..+.-..+..++||+||.++.
T Consensus 53 ~~YD~~lRP~~g~~pt~v~~di~V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~~~-~~L~Ln~~m~~kiW~PDTfF~ 131 (466)
T KOG3642|consen 53 RGYDNKLRPDIGSKPTEVETDIYVRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNGPQ-EALPLNSLMLSKIWIPDTFFR 131 (466)
T ss_pred HhhhcccCCCCCCCCcEEEEEEEEeecccccccCceEEEEEEEEEeehhhhhcccCcc-hhhccchhhhcCcccCCcccc
Confidence 489999999999999999999 999999999999999999999999999999998221 223333334799999999999
Q ss_pred ecCCc
Q psy16244 80 NKFTV 84 (86)
Q Consensus 80 ns~d~ 84 (86)
|+.++
T Consensus 132 NgkkS 136 (466)
T KOG3642|consen 132 NGKKS 136 (466)
T ss_pred cCccc
Confidence 99865
No 7
>KOG3644|consensus
Probab=99.54 E-value=1.5e-14 Score=104.01 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=70.8
Q ss_pred CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeec-CC-CCCCeeEEeeC-CCCcccCCE
Q psy16244 2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWE-PK-EYGGVHMLHVP-SDHIWRPDI 76 (86)
Q Consensus 2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~-p~-~~~~i~~~~~~-~~~iW~Pdi 76 (86)
+||++.||..+ +.|+.|.+. ++..|.+++|.++.+++++++++.|.|+||+.+ .+ ++.......+. .++||.||+
T Consensus 51 ~Yd~~~~P~~~~~~pv~V~v~i~vq~i~~ise~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~~~iW~Pd~ 130 (457)
T KOG3644|consen 51 NYDKRRPPNGKGGGPVSVSVEITVQSISSISEITMDFEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSLKQKIWTPDT 130 (457)
T ss_pred cCccccCCCccCCCceEEEEEEEEEeecceecccceEEeeeeeeeeEeCccccccccCcccccccccccccCCceecCce
Confidence 39999999887 799999999 999999999999999999999999999999988 34 33333333332 267999999
Q ss_pred EEEecCCcCC
Q psy16244 77 VLYNKFTVWQ 86 (86)
Q Consensus 77 ~i~ns~d~~~ 86 (86)
++.|+..+.+
T Consensus 131 ~F~NsK~a~~ 140 (457)
T KOG3644|consen 131 FFANSKSAEF 140 (457)
T ss_pred eeecccceee
Confidence 9999987753
No 8
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=33.62 E-value=15 Score=19.96 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=8.7
Q ss_pred eeCCCCcccCCE
Q psy16244 65 HVPSDHIWRPDI 76 (86)
Q Consensus 65 ~~~~~~iW~Pdi 76 (86)
.+.+-.||.||.
T Consensus 16 GLRPVqiWVPDt 27 (65)
T PF11455_consen 16 GLRPVQIWVPDT 27 (65)
T ss_pred CCCcceeeCCCC
Confidence 344667999986
No 9
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=30.83 E-value=21 Score=22.30 Aligned_cols=11 Identities=27% Similarity=1.014 Sum_probs=6.9
Q ss_pred CCCCcccCCEE
Q psy16244 67 PSDHIWRPDIV 77 (86)
Q Consensus 67 ~~~~iW~Pdi~ 77 (86)
..+.+|+||+.
T Consensus 71 gtsQ~WTPDLT 81 (151)
T PF06554_consen 71 GTSQLWTPDLT 81 (151)
T ss_dssp EB-TTS-TTTS
T ss_pred eeccccCcchh
Confidence 47899999864
No 10
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=28.80 E-value=1e+02 Score=16.61 Aligned_cols=28 Identities=7% Similarity=-0.014 Sum_probs=21.0
Q ss_pred CCeEEEEEc-chhhhhheeeeeeEEeeec
Q psy16244 13 HETLLVELR-TATLLSRHNLKNQIMTTNL 40 (86)
Q Consensus 13 ~~~~~V~~~-~l~~i~~v~e~~~~~~~~~ 40 (86)
+.+..|.++ .....+..|+.+...+..+
T Consensus 27 ~dsaEV~~g~EfiGvi~~DedeGe~Sy~f 55 (63)
T PF11324_consen 27 DDSAEVYIGDEFIGVIYRDEDEGEVSYNF 55 (63)
T ss_pred CCceEEEeCCEEEEEEEeecCCCcEEEEE
Confidence 678999999 8888888887776555443
No 11
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=25.27 E-value=75 Score=25.04 Aligned_cols=24 Identities=21% Similarity=0.703 Sum_probs=18.3
Q ss_pred CeeEEeeCCCCcccCCEEEEecCC
Q psy16244 60 GVHMLHVPSDHIWRPDIVLYNKFT 83 (86)
Q Consensus 60 ~i~~~~~~~~~iW~Pdi~i~ns~d 83 (86)
||+......-.+|+||+.+++-.|
T Consensus 379 GI~~~e~~~~~vwHpDVr~~~v~d 402 (683)
T COG0339 379 GITFVERKDIPVWHPDVRVFEVFD 402 (683)
T ss_pred CeEEEECCCCCccCCCceEEEEEc
Confidence 466666667899999999887554
No 12
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=21.34 E-value=1.3e+02 Score=17.53 Aligned_cols=21 Identities=29% Similarity=0.735 Sum_probs=13.1
Q ss_pred CceeecCC-CCCCeeEEeeCCC
Q psy16244 49 YKLRWEPK-EYGGVHMLHVPSD 69 (86)
Q Consensus 49 ~rL~W~p~-~~~~i~~~~~~~~ 69 (86)
+++.|.|. .|.|.+...+..+
T Consensus 86 ~~l~w~p~~~~~G~S~~~ln~~ 107 (113)
T PF10184_consen 86 PRLPWRPRISFDGTSTYTLNSD 107 (113)
T ss_pred eCCCcCCcEEEEEEEEEEECCC
Confidence 56667764 3667777666543
Done!