Query psy16244
Match_columns 86
No_of_seqs 131 out of 1030
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 16:30:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aod_A Acetylcholine-binding p 100.0 3E-29 1E-33 163.1 6.2 83 1-84 14-97 (205)
2 4aoe_A Acetylcholine-binding p 100.0 2.9E-29 9.8E-34 163.3 5.8 82 2-84 15-97 (205)
3 3sq6_A ACHBP, neuronal acetylc 100.0 3.6E-29 1.2E-33 162.4 6.1 83 1-83 12-95 (204)
4 2qc1_B Acetylcholine receptor 100.0 7.6E-29 2.6E-33 161.4 6.6 85 1-85 14-100 (212)
5 4afh_A ACHBP; acetylcholine-bi 99.9 1.9E-28 6.4E-33 161.7 4.7 84 2-85 16-108 (230)
6 1uw6_A Acetylcholine-binding p 99.9 1.6E-27 5.5E-32 155.1 5.5 81 2-84 14-95 (211)
7 2bg9_C Acetylcholine receptor 99.9 2.7E-27 9.3E-32 164.4 6.1 84 2-85 16-101 (369)
8 2wn9_A Soluble acetylcholine r 99.9 3.8E-27 1.3E-31 155.0 4.9 83 1-85 24-108 (228)
9 2bg9_B Acetylcholine receptor 99.9 4.9E-27 1.7E-31 163.2 5.2 84 2-85 14-99 (370)
10 4aq5_C Acetylcholine receptor 99.9 6.4E-27 2.2E-31 168.7 5.7 85 1-85 36-122 (522)
11 3rhw_A Avermectin-sensitive gl 99.9 8.9E-27 3E-31 160.5 6.0 84 1-84 12-98 (347)
12 2bg9_E Acetylcholine receptor 99.9 4.4E-27 1.5E-31 163.4 4.2 84 2-85 13-98 (370)
13 4aq5_A Acetylcholine receptor 99.9 3.4E-27 1.2E-31 168.1 3.7 84 2-85 38-123 (461)
14 4aq5_E Acetylcholine receptor 99.9 5.3E-27 1.8E-31 168.0 4.4 84 2-85 13-98 (488)
15 2bg9_A Acetylcholine receptor 99.9 4.3E-27 1.5E-31 163.4 2.7 84 2-85 14-99 (370)
16 4aq5_B Acetylcholine receptor 99.9 8.3E-27 2.8E-31 167.1 2.5 84 2-85 38-123 (493)
17 2bj0_A Acetylcholine-binding p 99.9 8.4E-26 2.9E-30 146.2 4.2 80 3-84 12-94 (203)
18 3tlw_A GLR4197 protein, GLIC; 99.9 3.8E-25 1.3E-29 151.0 5.6 82 2-84 6-88 (321)
19 3igq_A GLR4197 protein; plgic 99.9 3.3E-25 1.1E-29 143.6 2.8 80 4-84 4-84 (201)
20 3rqw_A ELIC pentameric ligand 99.7 5.5E-19 1.9E-23 120.5 2.0 72 9-85 2-85 (322)
21 3tur_A Mycobacteria tuberculos 26.8 33 0.0011 22.9 1.9 46 13-59 46-95 (287)
22 4hu2_A Probable conserved lipo 25.4 43 0.0015 21.2 2.2 46 13-59 115-164 (198)
No 1
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=99.95 E-value=3e-29 Score=163.10 Aligned_cols=83 Identities=22% Similarity=0.482 Sum_probs=79.5
Q ss_pred CCCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244 1 MGQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY 79 (86)
Q Consensus 1 ~~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ 79 (86)
.+||+.+||+.+++|+.|.++ +|.+|++|+|++|++++++|++|.|+|+||+|+| +|+||+.+.++.++||+||++++
T Consensus 14 ~~Y~~~~rPv~~~~pv~V~~~l~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~W~~-~~~~i~~i~v~~~~IW~PDi~l~ 92 (205)
T 4aod_A 14 SRCSPLNIPIEDDQPVKVSFEYSLQKIFRADVENDEVDIGLWTTLVWKDRCLNWFN-EFTSFKELTVPIAEIWTPDIFIF 92 (205)
T ss_dssp HTTCSSSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSC-CCSCCCEEEEEGGGSCCCCEEET
T ss_pred hcCCCcCCCCCCCccEEEEEEEEeeeeeeecccCCEEEEEEEEEEEEECCceeeCC-cCCCccEeeccHHhcCcCCEEEE
Confidence 379999999998999999999 9999999999999999999999999999999997 79999999999999999999999
Q ss_pred ecCCc
Q psy16244 80 NKFTV 84 (86)
Q Consensus 80 ns~d~ 84 (86)
|++++
T Consensus 93 N~~~~ 97 (205)
T 4aod_A 93 DSVGA 97 (205)
T ss_dssp TBSSC
T ss_pred ccccc
Confidence 99864
No 2
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=99.95 E-value=2.9e-29 Score=163.26 Aligned_cols=82 Identities=23% Similarity=0.438 Sum_probs=79.2
Q ss_pred CCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEEe
Q psy16244 2 GQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80 (86)
Q Consensus 2 ~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~n 80 (86)
+||+..||+.+++|++|.++ .|.+|++|+|++|++++++|++|.|+|+||+|+| +|+|++.+.++.++||+||++++|
T Consensus 15 ~Yn~~~rPv~~~~pv~V~~~l~l~~i~~vde~~q~~~~~~wl~~~W~D~rL~W~~-~~~~i~~i~v~~~~IW~PDi~l~N 93 (205)
T 4aoe_A 15 RANPNNIPIVDEQPVKVSFKYSLQDIYTADVGTDQVELGLWLVISWKDRSLSWSN-ECTTFNELTLPSKYIWLPHIEVYN 93 (205)
T ss_dssp TTCCSSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSC-CCSCCCEEEEEGGGSCCCCCEETT
T ss_pred hcCCCCCCCCCCccEEEEEEEEEEEeeeEcccCCEEEEEEEEEEEEECCccccCC-cCCCccEEEeCHHHhccccEEEec
Confidence 79999999999999999999 9999999999999999999999999999999997 799999999999999999999999
Q ss_pred cCCc
Q psy16244 81 KFTV 84 (86)
Q Consensus 81 s~d~ 84 (86)
+++.
T Consensus 94 ~~~~ 97 (205)
T 4aoe_A 94 SIGK 97 (205)
T ss_dssp BSSC
T ss_pred cccc
Confidence 9864
No 3
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=99.95 E-value=3.6e-29 Score=162.37 Aligned_cols=83 Identities=28% Similarity=0.539 Sum_probs=80.7
Q ss_pred CCCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244 1 MGQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY 79 (86)
Q Consensus 1 ~~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ 79 (86)
.+||+.+||+.++.|++|.++ +|.+|++|+|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus 12 ~~Yd~~~RP~~~~~~v~V~~~~~l~~i~~v~e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~~~~~iW~PDi~~~ 91 (204)
T 3sq6_A 12 KNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAY 91 (204)
T ss_dssp TTCCTTSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEEEGGGSCCCCEEET
T ss_pred hcCCCCCCCCCCCCcEEEEEEEEhhheeehhccccEEEEEEeeeeEEECCCcccChHHcCCccEEEcCHHHCcCCCEEeE
Confidence 489999999988899999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q psy16244 80 NKFT 83 (86)
Q Consensus 80 ns~d 83 (86)
|+++
T Consensus 92 N~~~ 95 (204)
T 3sq6_A 92 NAIS 95 (204)
T ss_dssp TBSS
T ss_pred cccc
Confidence 9998
No 4
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=99.95 E-value=7.6e-29 Score=161.43 Aligned_cols=85 Identities=39% Similarity=0.757 Sum_probs=81.9
Q ss_pred CCCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEE
Q psy16244 1 MGQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVL 78 (86)
Q Consensus 1 ~~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i 78 (86)
.+||+.+||+.+ +.|+.|.++ ++.+|++|+|++|.+++++|++|.|+|+||+|+|++|+|++.+.++.++||+||+++
T Consensus 14 ~~Yd~~~RP~~~~~~pv~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~~~~~iW~PDi~~ 93 (212)
T 2qc1_B 14 EDYSSVVRPVEDHREIVQVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVL 93 (212)
T ss_dssp TTCCSSSCSCSSTTSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEECGGGSCCCCEEE
T ss_pred HhCCCCCCCccCCCCcEEEEEEEEEecccccccCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEcchhhccCCceec
Confidence 489999999988 899999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcC
Q psy16244 79 YNKFTVW 85 (86)
Q Consensus 79 ~ns~d~~ 85 (86)
+|++++-
T Consensus 94 ~N~~~~~ 100 (212)
T 2qc1_B 94 YNNADGD 100 (212)
T ss_dssp CCBTTTS
T ss_pred ccccccc
Confidence 9999864
No 5
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=99.95 E-value=1.9e-28 Score=161.68 Aligned_cols=84 Identities=27% Similarity=0.440 Sum_probs=81.3
Q ss_pred CCCCCCC---CCCC-CCeEEEEEc-chhhhhheeee----eeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcc
Q psy16244 2 GQNRVLK---LLQN-HETLLVELR-TATLLSRHNLK----NQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIW 72 (86)
Q Consensus 2 ~Yd~~~r---P~~~-~~~~~V~~~-~l~~i~~v~e~----~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW 72 (86)
+||+.+| |+.+ +.|++|.++ ++.+|++|+|+ +|++++++|++|.|+|+||+|+|++|+|++.+.++.++||
T Consensus 16 ~Yd~~~R~~~P~~~~~~pv~V~~~l~l~~i~~v~E~~~~~~~~~t~~~~l~~~W~D~rL~wnp~~~~~i~~i~l~~~~IW 95 (230)
T 4afh_A 16 TYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIW 95 (230)
T ss_dssp HHHHHCSCSCSCSSBCCCEEEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECGGGCCCCCTTSCCSEEEECGGGSC
T ss_pred hcChhhccCCCCCCCCCCEEEEEEEEHhHhhhhhhcccccCcEEEEEEEEeeEEECccccCCcccCCCeeEEEeccCCEE
Confidence 6999999 9988 899999999 99999999999 9999999999999999999999999999999999999999
Q ss_pred cCCEEEEecCCcC
Q psy16244 73 RPDIVLYNKFTVW 85 (86)
Q Consensus 73 ~Pdi~i~ns~d~~ 85 (86)
+||++++|++++-
T Consensus 96 ~PDi~l~N~~~~~ 108 (230)
T 4afh_A 96 TPDIKLFNSVDLD 108 (230)
T ss_dssp CCCEEETTCSSSS
T ss_pred CCcEEEEeccccc
Confidence 9999999999874
No 6
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=99.94 E-value=1.6e-27 Score=155.07 Aligned_cols=81 Identities=19% Similarity=0.379 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEEe
Q psy16244 2 GQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80 (86)
Q Consensus 2 ~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~n 80 (86)
+||+.+||+.++.|++|.++ ++.+|++++|++|.+++++|++|.|+|+||+|+|++|+| .+.++.++||+||++++|
T Consensus 14 ~Yd~~~RP~~~~~~~~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~--~l~~~~~~iW~PDi~~~N 91 (211)
T 1uw6_A 14 TSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPD--QVSVPISSLWVPDLAAYN 91 (211)
T ss_dssp HCCTTSCCCCTTCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCS--EEEEEGGGSCCCCEEETT
T ss_pred cCCCcCCCCCCCCcEEEEEEEEHHHhhchhhhCcEEEEEEEEEeEeECcccccChhhcCC--eEEccHHHccCCCEeeec
Confidence 79999999944899999999 999999999999999999999999999999999999998 889999999999999999
Q ss_pred cCCc
Q psy16244 81 KFTV 84 (86)
Q Consensus 81 s~d~ 84 (86)
++++
T Consensus 92 ~~~~ 95 (211)
T 1uw6_A 92 AISK 95 (211)
T ss_dssp BCSC
T ss_pred cccc
Confidence 9875
No 7
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.94 E-value=2.7e-27 Score=164.44 Aligned_cols=84 Identities=30% Similarity=0.628 Sum_probs=81.4
Q ss_pred CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244 2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY 79 (86)
Q Consensus 2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ 79 (86)
+||+.+||+.+ ++|++|.++ .+.+|.+++|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus 16 ~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~ 95 (369)
T 2bg9_C 16 KYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQ 95 (369)
T ss_dssp TSCSSSCCSSSSSSCCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEEECGGGSCCCCEEET
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEehhhccccccccceEEEEEEeeeeECCCcccCccccCCeeEEEecHHhccCCcEecc
Confidence 89999999987 899999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcC
Q psy16244 80 NKFTVW 85 (86)
Q Consensus 80 ns~d~~ 85 (86)
|++++-
T Consensus 96 N~~~~~ 101 (369)
T 2bg9_C 96 NNNDGQ 101 (369)
T ss_dssp TTCSSC
T ss_pred cccccc
Confidence 999864
No 8
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=99.93 E-value=3.8e-27 Score=155.00 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=79.5
Q ss_pred CCCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEE
Q psy16244 1 MGQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVL 78 (86)
Q Consensus 1 ~~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i 78 (86)
.+||+. |+.+ +.|+.|.++ ++.+|++++|++|.+++++|++|.|+|+||+|+|++|+|++.+.++.++||+||+++
T Consensus 24 ~~Yd~~--P~~~~~~pv~V~~~~~l~~i~~v~e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~~~~~IW~PDi~l 101 (228)
T 2wn9_A 24 NRSPMY--PGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITA 101 (228)
T ss_dssp TSSCCC--CCCBTTBCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEEEEGGGSCCCCEEE
T ss_pred hhcCCC--cccCCCCCEEEEEEEEhhHhhhhhccccEEEEEEEEEEEEECCCccCCchhcCCeeEEEecHHHccCCceec
Confidence 489999 9887 899999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcC
Q psy16244 79 YNKFTVW 85 (86)
Q Consensus 79 ~ns~d~~ 85 (86)
+|++++-
T Consensus 102 ~N~~~~~ 108 (228)
T 2wn9_A 102 YSSTRPV 108 (228)
T ss_dssp SSBSSCC
T ss_pred ccccccc
Confidence 9999863
No 9
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.93 E-value=4.9e-27 Score=163.22 Aligned_cols=84 Identities=37% Similarity=0.652 Sum_probs=81.2
Q ss_pred CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244 2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY 79 (86)
Q Consensus 2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ 79 (86)
+||+.+||+.+ ++|++|.++ .+.+|.+++|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus 14 ~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~ 93 (370)
T 2bg9_B 14 NYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLM 93 (370)
T ss_dssp HCCTTCCSSCSSSSCCEEEEECCEEEEEEEETTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEEESSSSCCCCEEES
T ss_pred cCCCCCCCCCCCCCCEEEEEEEEehhhhhhhccccceEEEEEEeeeeECcccCcCccccCCeeEEEechhhccCCCcccc
Confidence 79999999987 899999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcC
Q psy16244 80 NKFTVW 85 (86)
Q Consensus 80 ns~d~~ 85 (86)
|++++-
T Consensus 94 N~~~~~ 99 (370)
T 2bg9_B 94 NNNDGS 99 (370)
T ss_dssp SCCCSC
T ss_pred cccccc
Confidence 998863
No 10
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.93 E-value=6.4e-27 Score=168.68 Aligned_cols=85 Identities=29% Similarity=0.612 Sum_probs=82.0
Q ss_pred CCCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEE
Q psy16244 1 MGQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVL 78 (86)
Q Consensus 1 ~~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i 78 (86)
.+||+.+||+.+ +++++|.++ ++.+|+++||++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||+++
T Consensus 36 ~~Yd~~~RPv~~~~~pv~V~v~l~l~~I~~VdE~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~vp~~~IW~PDi~l 115 (522)
T 4aq5_C 36 NKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVL 115 (522)
T ss_dssp TTSCSSSCCSSSSSSCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCCCCCCTCSCEEECGGGSCCCCEEE
T ss_pred cCCCCCCCCCCCCCCcEEEEEEEEeeecccccccccEEEEEEEEeeeEeCcccCCCchhcCCceEEeeccCCEECCcEec
Confidence 489999999988 899999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcC
Q psy16244 79 YNKFTVW 85 (86)
Q Consensus 79 ~ns~d~~ 85 (86)
+|++|+-
T Consensus 116 ~N~~d~~ 122 (522)
T 4aq5_C 116 QNNNDGQ 122 (522)
T ss_dssp TTTCSSC
T ss_pred cccccCC
Confidence 9999874
No 11
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=99.93 E-value=8.9e-27 Score=160.48 Aligned_cols=84 Identities=19% Similarity=0.331 Sum_probs=79.6
Q ss_pred CCCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEee-CCCCcccCCEE
Q psy16244 1 MGQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHV-PSDHIWRPDIV 77 (86)
Q Consensus 1 ~~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~-~~~~iW~Pdi~ 77 (86)
.+||+.+||+.+ ++|++|.++ ++.+|++++|++|++++++|++|.|+|+||+|+|++|++++.+.+ +.++||+||++
T Consensus 12 ~~Yd~~~RP~~~~~~~v~V~~~l~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~~~~~IW~PDi~ 91 (347)
T 3rhw_A 12 SGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTF 91 (347)
T ss_dssp SCCCTTSCCCCSSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECCTTCCCCCCCEE
T ss_pred cCCCCCCCCCCCCCCcEEEEEEEEEEeeccccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEecchhceecCCEe
Confidence 489999999988 799999999 999999999999999999999999999999999999999998886 78999999999
Q ss_pred EEecCCc
Q psy16244 78 LYNKFTV 84 (86)
Q Consensus 78 i~ns~d~ 84 (86)
++|++++
T Consensus 92 l~N~~~~ 98 (347)
T 3rhw_A 92 FPNEKQA 98 (347)
T ss_dssp CTTEEEE
T ss_pred eeccccc
Confidence 9998864
No 12
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.93 E-value=4.4e-27 Score=163.40 Aligned_cols=84 Identities=35% Similarity=0.695 Sum_probs=81.2
Q ss_pred CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244 2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY 79 (86)
Q Consensus 2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ 79 (86)
+||+.+||+.+ ++|++|.++ ++.+|.+++|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus 13 ~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~ 92 (370)
T 2bg9_E 13 DYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLE 92 (370)
T ss_dssp HCCSSSCCCSSSSSCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCBCCCGGGSCCCCEEES
T ss_pred ccCCCCCCCCCCCCCEEEEEEEEehhhhchhhcccceeEeEEEeeEEECCCcCCChhhcCCeeEEeechhccCCCCEeec
Confidence 79999999987 899999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcC
Q psy16244 80 NKFTVW 85 (86)
Q Consensus 80 ns~d~~ 85 (86)
|++++-
T Consensus 93 N~~~~~ 98 (370)
T 2bg9_E 93 NNVDGQ 98 (370)
T ss_dssp SSCCSC
T ss_pred cccCCc
Confidence 999864
No 13
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.93 E-value=3.4e-27 Score=168.08 Aligned_cols=84 Identities=33% Similarity=0.677 Sum_probs=81.4
Q ss_pred CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244 2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY 79 (86)
Q Consensus 2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ 79 (86)
+||+.+||+.+ ++|++|.++ ++.+|+++||++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus 38 ~Yd~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~vp~~~IW~PDi~l~ 117 (461)
T 4aq5_A 38 NYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLY 117 (461)
T ss_dssp TCCSSCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTCBCCTTTHHHHSSEEEEGGGSCCCCEEES
T ss_pred cCCCCCCCCCCCCCcEEEEEEEEEeeehhhhccceEEEEEEEEeeeeECcccCCChhhcCCccEEEecCCCEECCceeee
Confidence 89999999988 899999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcC
Q psy16244 80 NKFTVW 85 (86)
Q Consensus 80 ns~d~~ 85 (86)
|++|+-
T Consensus 118 N~~d~~ 123 (461)
T 4aq5_A 118 NNADGD 123 (461)
T ss_dssp SCCCSC
T ss_pred cccccc
Confidence 999864
No 14
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.93 E-value=5.3e-27 Score=167.98 Aligned_cols=84 Identities=35% Similarity=0.695 Sum_probs=81.5
Q ss_pred CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244 2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY 79 (86)
Q Consensus 2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ 79 (86)
+||+.+||+.+ +++++|.++ ++.+|++|+|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus 13 ~Yd~~~RP~~~~~~pv~V~v~l~l~~I~~VdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~~IW~PDi~l~ 92 (488)
T 4aq5_E 13 DYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLE 92 (488)
T ss_dssp HCCSSSCCCSSTTSCCCEEEEEEEEEECCCBTTTTBEEEEEEEEEEEECCTTCCCTTTTTTCSCCCCCTTSSCCCCEECS
T ss_pred cCCCCCCCCCCCCCcEEEEEEEEEeeeeccccccceeeeeeeeeeEEECcccCcCchhcCCceEEecCccCEECCceehh
Confidence 79999999988 899999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcC
Q psy16244 80 NKFTVW 85 (86)
Q Consensus 80 ns~d~~ 85 (86)
|++|+-
T Consensus 93 N~~d~~ 98 (488)
T 4aq5_E 93 NNVDGQ 98 (488)
T ss_dssp SSCCSC
T ss_pred cccccc
Confidence 999864
No 15
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.93 E-value=4.3e-27 Score=163.42 Aligned_cols=84 Identities=33% Similarity=0.677 Sum_probs=81.0
Q ss_pred CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244 2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY 79 (86)
Q Consensus 2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ 79 (86)
+||+.+||+.+ ++|++|.++ .+.+|.+++|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus 14 ~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v~~~~IW~PDi~~~ 93 (370)
T 2bg9_A 14 NYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLY 93 (370)
T ss_dssp SCCTTCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEEEGGGSCCCCEEET
T ss_pred cCCCCCCCCCCCCCCEEEEEEEEehHhhcchhhccceEEEEEEeeeeECCCccCChhhcCCccEEEechhhccCCcEecc
Confidence 79999999987 899999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcC
Q psy16244 80 NKFTVW 85 (86)
Q Consensus 80 ns~d~~ 85 (86)
|++++-
T Consensus 94 N~~~~~ 99 (370)
T 2bg9_A 94 NNADGD 99 (370)
T ss_dssp TCCCSC
T ss_pred cccccc
Confidence 998763
No 16
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.92 E-value=8.3e-27 Score=167.14 Aligned_cols=84 Identities=37% Similarity=0.652 Sum_probs=81.4
Q ss_pred CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244 2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY 79 (86)
Q Consensus 2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ 79 (86)
+||+.+||+.+ +++++|.++ ++.+|++++|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus 38 ~Yd~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~~IW~PDi~l~ 117 (493)
T 4aq5_B 38 NYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLM 117 (493)
T ss_dssp HCCSSSCSSCSSSSCCEEEEECCEEEEEEEETTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCEEECSCSSCCCCCEES
T ss_pred cCCCCCCCCCCCCCcEEEEEEEEEeeeeeccccceEEEEEEEeecceECcccCCChhhcCCeeEEecccccCccCcEEEe
Confidence 79999999988 899999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcC
Q psy16244 80 NKFTVW 85 (86)
Q Consensus 80 ns~d~~ 85 (86)
|++|+-
T Consensus 118 N~~d~~ 123 (493)
T 4aq5_B 118 NNNDGS 123 (493)
T ss_dssp SCCCSC
T ss_pred cccccc
Confidence 999863
No 17
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=99.92 E-value=8.4e-26 Score=146.22 Aligned_cols=80 Identities=19% Similarity=0.360 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCce-eecCCCCCCeeEEeeCCCCcccCCEEEEe
Q psy16244 3 QNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKL-RWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80 (86)
Q Consensus 3 Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL-~W~p~~~~~i~~~~~~~~~iW~Pdi~i~n 80 (86)
||+.+||+.++.|++|.++ ++.+|++++|++|.+++++|++|.|+|+|| +|+|++ |++.+.++.++||+||++++|
T Consensus 12 ~d~~~RP~~~~~p~~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~~w~~~~--~i~~~~~~~~~iW~PDi~~~N 89 (203)
T 2bj0_A 12 GESDVIPLSNNTPLNVSLNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSS--SLDQVSLPVSKMWTPDLSFYN 89 (203)
T ss_dssp HTTTSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGGGGTTTS--SCSEEEEEGGGSCCCCEEETT
T ss_pred cCCccCCCCCCCCEEEEEEEEEEeEeeecCCCCEEEEEEEEEeEEECcchhccCccC--CceEEEEchhhccCCCccccc
Confidence 7999999988899999999 999999999999999999999999999999 999998 899999999999999999999
Q ss_pred c-CCc
Q psy16244 81 K-FTV 84 (86)
Q Consensus 81 s-~d~ 84 (86)
+ +++
T Consensus 90 ~~~~~ 94 (203)
T 2bj0_A 90 AIAAP 94 (203)
T ss_dssp CSSCC
T ss_pred ccccc
Confidence 9 875
No 18
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=99.91 E-value=3.8e-25 Score=150.96 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEEe
Q psy16244 2 GQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80 (86)
Q Consensus 2 ~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~n 80 (86)
.+|+++||..+++|++|.++ ++.+|+++||++|++++++|++|.|+|+||+|+|++|+ ++.+.++.++||+||++++|
T Consensus 6 q~d~~~RP~~~~~~v~V~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~~~~~~-i~~~~~~~~~IW~PDi~l~N 84 (321)
T 3tlw_A 6 QDMVSPPPPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVN 84 (321)
T ss_dssp ---CCCCCCSSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCSTTTC-CSSEECCGGGSCCCCEEESS
T ss_pred cCCCccCCCCCCCCEEEEEEEEEEeecceeccCcEEEEEEEEeeEEECcccCCCCccCC-eeeecccccCeEcCcEEeec
Confidence 47999999877999999999 99999999999999999999999999999999999998 99999999999999999999
Q ss_pred cCCc
Q psy16244 81 KFTV 84 (86)
Q Consensus 81 s~d~ 84 (86)
++++
T Consensus 85 ~~~~ 88 (321)
T 3tlw_A 85 VENA 88 (321)
T ss_dssp BSSC
T ss_pred cccc
Confidence 9886
No 19
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=99.90 E-value=3.3e-25 Score=143.61 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEEecC
Q psy16244 4 NRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNKF 82 (86)
Q Consensus 4 d~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ns~ 82 (86)
.+++||+.+++|+.|.++ ++.+|++|+|++|++++++|++|.|+|+||+|+|++ +|++.+.++.++||+||++++|++
T Consensus 4 ~~~~RP~~~~~pv~V~~~l~l~~i~~vdE~~~~~t~~~~l~~~W~D~rL~w~~~~-~~i~~~~~~~~~IW~PDi~l~N~~ 82 (201)
T 3igq_A 4 MVSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVE 82 (201)
T ss_dssp CCSCCCCBTTBCEEEEEEEEEEEEECCCTTSSEEEEEEEEEEEEECGGGCCCHHH-HTCSCEECCGGGSCCCCEEESSBS
T ss_pred ccccCCCCCCCCEEEEEEEEeeecccCcccCCEEEEEEEEeeEEECCccCCCCcC-CCEeEecccccCcCccCEEEEccc
Confidence 368999955899999999 999999999999999999999999999999999988 589999999999999999999997
Q ss_pred Cc
Q psy16244 83 TV 84 (86)
Q Consensus 83 d~ 84 (86)
++
T Consensus 83 ~~ 84 (201)
T 3igq_A 83 NA 84 (201)
T ss_dssp SS
T ss_pred cc
Confidence 64
No 20
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=99.73 E-value=5.5e-19 Score=120.49 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=59.8
Q ss_pred CCCC---CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEE--------eeCCCCcccCCE
Q psy16244 9 LLQN---HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHML--------HVPSDHIWRPDI 76 (86)
Q Consensus 9 P~~~---~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~--------~~~~~~iW~Pdi 76 (86)
|+.| ++|++|.++ ++.+|.++||++|++++++|++|.|+|+||+|+ |++.+ .++.++||+||+
T Consensus 2 Pv~n~s~~~pv~V~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~~~-----~~~~l~l~~~~~~~ip~~~IW~Pdi 76 (322)
T 3rqw_A 2 PADNAADARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTP-----GDKPLIVENTQIERWINNGLWVPAL 76 (322)
T ss_dssp ---------CEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSCCCCS-----TTSCEEEETHHHHHHHHTTCCCCCE
T ss_pred CcCCCCCCCCEEEEEEEEEEeeccccccCcEEEEEEEEeeEEechhhCCC-----CCCceeecchhhcccccccccCCcE
Confidence 6665 469999999 999999999999999999999999999999984 45555 446899999999
Q ss_pred EEEecCCcC
Q psy16244 77 VLYNKFTVW 85 (86)
Q Consensus 77 ~i~ns~d~~ 85 (86)
+++|++++-
T Consensus 77 ~l~N~~~~~ 85 (322)
T 3rqw_A 77 EFINVVGSP 85 (322)
T ss_dssp EETTBSSCC
T ss_pred EEEcccCcc
Confidence 999999874
No 21
>3tur_A Mycobacteria tuberculosis LD-transpeptidase type; protein-peptidoglycan complex, peptidoglycan binding protein; HET: 0JC DGL 6CL; 1.72A {Mycobacterium tuberculosis} PDB: 3u1p_A 3u1q_A 3vae_A 3tx4_A 4huc_A
Probab=26.80 E-value=33 Score=22.87 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=28.0
Q ss_pred CCeEEEEEc-chhhhhheeeeeeEEeeecEEE--EEE-EeCceeecCCCCC
Q psy16244 13 HETLLVELR-TATLLSRHNLKNQIMTTNLWVE--QSW-YDYKLRWEPKEYG 59 (86)
Q Consensus 13 ~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~--~~W-~D~rL~W~p~~~~ 59 (86)
+.|+.|.|. -+.. -..-|+...+++.--+. -.| .|.++.|.|++|-
T Consensus 46 ~~pv~~~F~~~v~d-r~~ve~~i~v~t~p~~~g~~~W~~~~~~~~rp~~yw 95 (287)
T 3tur_A 46 GEPVAIRFDENIAD-RGAAEKAIKITTNPPVEGAFYWLNNREVRWRPEHFW 95 (287)
T ss_dssp TCCEEEEESSCCSC-HHHHHHHEEEEEESCCCEEEEEEETTEEEEEESSCC
T ss_pred cCeEEEECCCCCcc-hHhhcceeEEECCCCCceeeEEcCCCEEEeCCcccC
Confidence 578888887 4432 12234455555443333 355 4789999998874
No 22
>4hu2_A Probable conserved lipoprotein LPPS; cell-WALL, transpeptidase, immunoglobuline-fold, peptidoglyc unknown function; 1.46A {Mycobacterium tuberculosis}
Probab=25.38 E-value=43 Score=21.19 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=26.7
Q ss_pred CCeEEEEEc-chhhhhheeeeeeEEeeecEE--EEEEE-eCceeecCCCCC
Q psy16244 13 HETLLVELR-TATLLSRHNLKNQIMTTNLWV--EQSWY-DYKLRWEPKEYG 59 (86)
Q Consensus 13 ~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~--~~~W~-D~rL~W~p~~~~ 59 (86)
+.|+.|.|. -+..= .--|+.-.++..--+ ...|. |.+|.|.|++|-
T Consensus 115 g~Pv~v~F~~pV~dr-aave~ai~Vtt~p~v~G~~~W~~d~~v~~RP~~yW 164 (198)
T 4hu2_A 115 GEPVAIRFDENIADR-GAAEKAIKITTNPPVEGAFYWLNNREVRWRPEHFW 164 (198)
T ss_dssp TCCEEEEESSCCSCH-HHHHHTEEEEEESCCCEEEEESSSSEEEEEESSCC
T ss_pred CceEEEECCCCCCCh-HHhhcccEEecCCCCcEEEEECCCCEEEEeccccC
Confidence 578889987 44321 112344444333322 24674 789999998873
Done!