RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16244
(86 letters)
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich,
Cys-loop, buried hydrophilic residues; HET: NAG MAN;
1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 91.3 bits (227), Expect = 6e-25
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 12 NHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
+ E + V + L + NQI+TTN+ ++Q W DY L+W P +YGGV +H+PS+
Sbjct: 26 HREIVQVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEK 85
Query: 71 IWRPDIVLYN 80
IWRPD+VLYN
Sbjct: 86 IWRPDVVLYN 95
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 91.9 bits (228), Expect = 5e-24
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 12 NHETLLVELRTA-TLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
+ + V + T L N KN+ MTT++++ +W DY+L+W+P Y G+ L +PSD
Sbjct: 25 VGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDD 84
Query: 71 IWRPDIVLYN 80
+W+PDIVL N
Sbjct: 85 VWQPDIVLMN 94
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 88.3 bits (219), Expect = 7e-24
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 11 QNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSD 69
Q + V + + + KNQ++ W++ SW D+ L+W EY GV + VP
Sbjct: 22 QRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPIS 81
Query: 70 HIWRPDIVLYNK 81
+W PD+ YN
Sbjct: 82 SLWVPDLAAYNA 93
>2bg9_C Acetylcholine receptor protein, delta chain; ION
channel/receptor, ION channel, electron microscopy, ION
transport, postsynaptic membrane; 4.00A {Torpedo
marmorata}
Length = 369
Score = 91.1 bits (226), Expect = 9e-24
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 12 NHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
N+E + + L T + L ++ +TTN+W++ +WYD++L W EY + +L + +
Sbjct: 27 NNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPEL 86
Query: 71 IWRPDIVLYN 80
IW PDIVL N
Sbjct: 87 IWIPDIVLQN 96
>2bg9_A Acetylcholine receptor protein, alpha chain; ION
channel/receptor, ION channel, electron microscopy, ION
transport, postsynaptic membrane; 4.00A {Torpedo
marmorata}
Length = 370
Score = 90.3 bits (224), Expect = 2e-23
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 12 NHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
+ + + + L + NQI+ TN+ + Q W D +LRW P +YGG+ + +PSD
Sbjct: 25 HTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDD 84
Query: 71 IWRPDIVLYN 80
+W PD+VLYN
Sbjct: 85 VWLPDLVLYN 94
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 88.0 bits (218), Expect = 2e-23
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 12 NHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
+ L V L T + + + + + +Q W L W+P EYG + +
Sbjct: 34 KDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAAD 93
Query: 71 IWRPDIVLYNKF 82
IW PDI Y+
Sbjct: 94 IWTPDITAYSST 105
>2bg9_E Acetylcholine receptor protein, gamma chain; ION
channel/receptor, ION channel, electron microscopy, ION
transport, postsynaptic membrane; 4.00A {Torpedo
marmorata}
Length = 370
Score = 88.8 bits (220), Expect = 6e-23
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 12 NHETLLVELRTA-TLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
+ V L+ T L N K + +TTN+W+E W DY+L W EY G+ ++ +PS+
Sbjct: 24 LDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSEL 83
Query: 71 IWRPDIVLYN 80
+W PD+VL N
Sbjct: 84 LWLPDVVLEN 93
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 82.2 bits (203), Expect = 2e-21
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 6 VLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHML 64
+ Q + V + + N + W + +W D L W +
Sbjct: 18 DVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQ--V 75
Query: 65 HVPSDHIWRPDIVLYN 80
VP +W PD+ YN
Sbjct: 76 SVPISSLWVPDLAAYN 91
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 81.8 bits (202), Expect = 2e-21
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 11 QNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSD 69
N+ L V L + + + + LW + SW + + +P
Sbjct: 20 SNNTPLNVSLNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSS-LLSSSSLDQVSLPVS 78
Query: 70 HIWRPDIVLYNKFTVWQ 86
+W PD+ YN +
Sbjct: 79 KMWTPDLSFYNAIAAPE 95
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 83.3 bits (205), Expect = 1e-20
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 12 NHETLLVELRTA-TLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
+ V L+ T L N K + +TTN+W+E W DY+L W EY G+ ++ +PS+
Sbjct: 24 LDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSEL 83
Query: 71 IWRPDIVLYNKF 82
+W PD+VL N
Sbjct: 84 LWLPDVVLENNV 95
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 82.9 bits (204), Expect = 2e-20
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 12 NHETLLVELRTA-TLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
N+E + + L + L ++ +TTN+W++ +WYD++L W EY + +L + +
Sbjct: 48 NNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPEL 107
Query: 71 IWRPDIVLYN 80
IW PDIVL N
Sbjct: 108 IWIPDIVLQN 117
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane
protein, transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A
2xqa_A ...
Length = 321
Score = 81.2 bits (201), Expect = 3e-20
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 30 NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
+ + N ++ SW D +L ++P GV + + IW P+I N
Sbjct: 35 DDCAETFKVNAFLSLSWKDRRLAFDPVRS-GVRVKTYEPEAIWIPEIRFVN 84
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 79.6 bits (196), Expect = 4e-20
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 28 RHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
R N I T V+ SW D LRW+P+ + + D IW PDI L+N
Sbjct: 51 RGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFN 103
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 80.9 bits (199), Expect = 6e-20
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 12 NHETLLVELRTA-TLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
+ + V + T L N KN+ MTT++++ +W DY+L+W+P Y G+ L +PSD
Sbjct: 49 VGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDD 108
Query: 71 IWRPDIVLYN 80
+W+PDIVL N
Sbjct: 109 VWQPDIVLMN 118
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 78.1 bits (192), Expect = 7e-19
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 12 NHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
+ + + + L + NQI+ TN+ + Q W D +LRW P +YGG+ + +PSD
Sbjct: 49 HTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDD 108
Query: 71 IWRPDIVLYN 80
+W PD+VLYN
Sbjct: 109 VWLPDLVLYN 118
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 70.4 bits (173), Expect = 6e-17
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 30 NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
+ K + N ++ SW D +L ++P GV + + IW P+I N
Sbjct: 31 DDKAETFKVNAFLSLSWKDRRLAFDPVRS-GVRVKTYEPEAIWIPEIRFVN 80
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A*
3ria_A* 3rif_A*
Length = 347
Score = 69.1 bits (169), Expect = 9e-16
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 32 KNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVP-SDHIWRPDIVLYN 80
N + L + +SW D +L + K G + + IW PD N
Sbjct: 45 VNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPN 94
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 68.5 bits (168), Expect = 1e-15
Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 32 KNQIMTTNLWVEQSWYDYKLRW---EPKEYGGVHMLHVPSDHIWRPDIVLYN 80
Q + ++ W + +P + ++ +W P + N
Sbjct: 29 LEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFIN 80
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 2.7
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 12/86 (13%)
Query: 1 MGQ-NRVLKLLQNHETLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLR-WEPKEY 58
+ N +L+ + LL ++ + N + + S R + K Y
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-----SIQAELRRLLKSKPY 243
Query: 59 GGVHMLHVPSDHIWRPDIVLYNKFTV 84
+ L V ++ N F +
Sbjct: 244 --ENCLLV-LLNVQNAKAW--NAFNL 264
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 24.8 bits (55), Expect = 4.8
Identities = 1/13 (7%), Positives = 5/13 (38%)
Query: 46 WYDYKLRWEPKEY 58
+ + E ++
Sbjct: 404 LENEETDAEGNKF 416
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 24.2 bits (52), Expect = 8.7
Identities = 3/48 (6%), Positives = 15/48 (31%)
Query: 17 LVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHML 64
+ + ++ + + + T ++ + +G H +
Sbjct: 20 MFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPV 67
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31,
alpha-glucosidase membrane, disease mutation, disulfide
bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL;
2.15A {Homo sapiens} PDB: 3lpo_A*
Length = 898
Score = 24.0 bits (52), Expect = 9.1
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 46 WYDYKLRWEPKEYGGVHMLHVPSDHI 71
WYDY+ + +++P+D I
Sbjct: 729 WYDYESGAKRPWRKQRVDMYLPADKI 754
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.451
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,328,453
Number of extensions: 62621
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 25
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)