BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16245
(113 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242024443|ref|XP_002432637.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
gi|212518107|gb|EEB19899.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
Length = 438
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 78/82 (95%), Positives = 81/82 (98%)
Query: 32 SRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 91
+RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKG CPIDK
Sbjct: 4 NRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGRCPIDK 63
Query: 92 THRNQCRACRLNKCFMSAMNKD 113
THRNQCRACRLNKCF++AMNKD
Sbjct: 64 THRNQCRACRLNKCFIAAMNKD 85
>gi|195434755|ref|XP_002065368.1| GK14705 [Drosophila willistoni]
gi|194161453|gb|EDW76354.1| GK14705 [Drosophila willistoni]
Length = 730
Score = 174 bits (440), Expect = 8e-42, Method: Composition-based stats.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 65
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 66 RNQCRACRLAKCFQSAMNKD 85
>gi|195146576|ref|XP_002014260.1| GL19043 [Drosophila persimilis]
gi|194106213|gb|EDW28256.1| GL19043 [Drosophila persimilis]
Length = 819
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 134 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 193
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 194 RNQCRACRLAKCFQSAMNKD 213
>gi|195385346|ref|XP_002051367.1| GJ15408 [Drosophila virilis]
gi|194147824|gb|EDW63522.1| GJ15408 [Drosophila virilis]
Length = 726
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 65
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 66 RNQCRACRLAKCFQSAMNKD 85
>gi|194760978|ref|XP_001962709.1| GF15588 [Drosophila ananassae]
gi|190616406|gb|EDV31930.1| GF15588 [Drosophila ananassae]
Length = 702
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 65
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 66 RNQCRACRLAKCFQSAMNKD 85
>gi|195473765|ref|XP_002089163.1| GE25723 [Drosophila yakuba]
gi|194175264|gb|EDW88875.1| GE25723 [Drosophila yakuba]
Length = 691
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 65
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 66 RNQCRACRLAKCFQSAMNKD 85
>gi|194856940|ref|XP_001968860.1| GG25103 [Drosophila erecta]
gi|190660727|gb|EDV57919.1| GG25103 [Drosophila erecta]
Length = 693
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 65
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 66 RNQCRACRLAKCFQSAMNKD 85
>gi|225581113|gb|ACN94685.1| GA21482 [Drosophila miranda]
Length = 690
Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 65
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 66 RNQCRACRLAKCFQSAMNKD 85
>gi|198475944|ref|XP_001357213.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
gi|198137475|gb|EAL34282.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
Length = 691
Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 65
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 66 RNQCRACRLAKCFQSAMNKD 85
>gi|195116317|ref|XP_002002702.1| GI17531 [Drosophila mojavensis]
gi|193913277|gb|EDW12144.1| GI17531 [Drosophila mojavensis]
Length = 736
Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 65
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 66 RNQCRACRLAKCFQSAMNKD 85
>gi|195030592|ref|XP_001988152.1| GH11011 [Drosophila grimshawi]
gi|193904152|gb|EDW03019.1| GH11011 [Drosophila grimshawi]
Length = 719
Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 12 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 71
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 72 RNQCRACRLAKCFQSAMNKD 91
>gi|17137164|ref|NP_477140.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|442626233|ref|NP_001260109.1| dissatisfaction, isoform B [Drosophila melanogaster]
gi|7297033|gb|AAF52303.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|440213405|gb|AGB92645.1| dissatisfaction, isoform B [Drosophila melanogaster]
Length = 691
Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 65
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 66 RNQCRACRLAKCFQSAMNKD 85
>gi|4160012|gb|AAD05225.1| dissatisfaction [Drosophila melanogaster]
Length = 693
Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 65
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 66 RNQCRACRLAKCFQSAMNKD 85
>gi|312385998|gb|EFR30376.1| hypothetical protein AND_00091 [Anopheles darlingi]
Length = 787
Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats.
Identities = 75/85 (88%), Positives = 78/85 (91%)
Query: 29 TSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
T DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA G+LKG CP
Sbjct: 24 TDNGGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAAGELKGRCP 83
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
+DKTHRNQCRACRL+KCF SAMNKD
Sbjct: 84 VDKTHRNQCRACRLSKCFQSAMNKD 108
>gi|158298421|ref|XP_318587.4| AGAP009575-PA [Anopheles gambiae str. PEST]
gi|157013872|gb|EAA14563.5| AGAP009575-PA [Anopheles gambiae str. PEST]
Length = 761
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 74/80 (92%), Positives = 77/80 (96%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA G+LKG CP+DKTH
Sbjct: 2 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAAGELKGRCPVDKTH 61
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL+KCF SAMNKD
Sbjct: 62 RNQCRACRLSKCFQSAMNKD 81
>gi|328696467|ref|XP_003240033.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 459
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/80 (96%), Positives = 78/80 (97%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQG+LKG CPIDKTH
Sbjct: 5 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGELKGRCPIDKTH 64
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRLNKCF SAMNKD
Sbjct: 65 RNQCRACRLNKCFQSAMNKD 84
>gi|91077386|ref|XP_975255.1| PREDICTED: similar to Dissatisfaction (Dsf) [Tribolium castaneum]
gi|270002823|gb|EEZ99270.1| dissatisfaction [Tribolium castaneum]
Length = 483
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 72/80 (90%), Positives = 77/80 (96%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA GD+KG CP+DKTH
Sbjct: 28 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKATGDMKGRCPVDKTH 87
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL+KCF ++MNKD
Sbjct: 88 RNQCRACRLSKCFQASMNKD 107
>gi|157109777|ref|XP_001650818.1| Dissatisfaction (Dsf) [Aedes aegypti]
gi|108878920|gb|EAT43145.1| AAEL005381-PA, partial [Aedes aegypti]
Length = 723
Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/80 (92%), Positives = 77/80 (96%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA G+LKG CP+DKTH
Sbjct: 2 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAAGELKGRCPVDKTH 61
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL+KCF SAMNKD
Sbjct: 62 RNQCRACRLSKCFQSAMNKD 81
>gi|391328748|ref|XP_003738846.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Metaseiulus occidentalis]
Length = 524
Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 73/80 (91%), Positives = 75/80 (93%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPC VCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD KG CPIDKTH
Sbjct: 27 DRLLDIPCGVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDFKGKCPIDKTH 86
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF ++MNKD
Sbjct: 87 RNQCRACRLKKCFEASMNKD 106
>gi|195576854|ref|XP_002078288.1| GD23369 [Drosophila simulans]
gi|194190297|gb|EDX03873.1| GD23369 [Drosophila simulans]
Length = 468
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 65
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 66 RNQCRACRLAKCFQSAMNKD 85
>gi|195342846|ref|XP_002038009.1| GM18579 [Drosophila sechellia]
gi|194132859|gb|EDW54427.1| GM18579 [Drosophila sechellia]
Length = 184
Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/80 (92%), Positives = 76/80 (95%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKTH
Sbjct: 6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTH 65
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF SAMNKD
Sbjct: 66 RNQCRACRLAKCFQSAMNKD 85
>gi|340712645|ref|XP_003394866.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 425
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 69/82 (84%), Positives = 72/82 (87%)
Query: 32 SRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 91
SRDRLLDIPC VCGDRSSGKHYGIYSCDGCSGFFKRSIH NR Y CK QG +KG CPIDK
Sbjct: 2 SRDRLLDIPCLVCGDRSSGKHYGIYSCDGCSGFFKRSIHSNRRYICKVQGAMKGRCPIDK 61
Query: 92 THRNQCRACRLNKCFMSAMNKD 113
THRNQCRACRL KCF + MN+D
Sbjct: 62 THRNQCRACRLAKCFEANMNRD 83
>gi|383859045|ref|XP_003705008.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 442
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 67/80 (83%), Positives = 71/80 (88%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPC VCGDRSSGKHYGIYSCDGCSGFFKRSIH NR Y CKA+G +KG CPIDKTH
Sbjct: 20 DRLLDIPCNVCGDRSSGKHYGIYSCDGCSGFFKRSIHHNREYICKAEGSMKGRCPIDKTH 79
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF + MN+D
Sbjct: 80 RNQCRACRLAKCFEANMNRD 99
>gi|72099629|ref|XP_789465.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 457
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/114 (66%), Positives = 82/114 (71%), Gaps = 5/114 (4%)
Query: 4 FVGNCRQIPPRYPQYFMS----RPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCD 59
F G PP+ +S RP+ R S DRLLDIPCKVCGDRSSGKHYG+Y+CD
Sbjct: 15 FSGTVGLTPPKLTLTPISTPCIRPEQRQPVKIS-DRLLDIPCKVCGDRSSGKHYGVYACD 73
Query: 60 GCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
GCSGFFKRSIHR RVY CK QG G CPIDKTHRNQCRACRL KCF + MNKD
Sbjct: 74 GCSGFFKRSIHRGRVYVCKQQGKGGGDCPIDKTHRNQCRACRLRKCFEAQMNKD 127
>gi|443715570|gb|ELU07483.1| hypothetical protein CAPTEDRAFT_224811 [Capitella teleta]
Length = 360
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/83 (83%), Positives = 75/83 (90%)
Query: 31 ASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 90
A + RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIH+NRVYTCKA G+ KG CP+D
Sbjct: 9 AVKYRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHKNRVYTCKASGEKKGRCPMD 68
Query: 91 KTHRNQCRACRLNKCFMSAMNKD 113
KTHRNQCRACRL +CF + MNKD
Sbjct: 69 KTHRNQCRACRLTQCFSADMNKD 91
>gi|291232327|ref|XP_002736110.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 407
Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/80 (85%), Positives = 73/80 (91%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+RLLDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSIHRNRVYTCK QG G+CPIDKTH
Sbjct: 42 ERLLDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIHRNRVYTCKQQGKDGGNCPIDKTH 101
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF + MNKD
Sbjct: 102 RNQCRACRLKKCFDAQMNKD 121
>gi|357602940|gb|EHJ63582.1| hypothetical protein KGM_12726 [Danaus plexippus]
Length = 142
Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/80 (87%), Positives = 74/80 (92%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPC VCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA G++KG CP+DKTH
Sbjct: 56 DRLLDIPCNVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAGGEMKGRCPVDKTH 115
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF + MNKD
Sbjct: 116 RNQCRACRLAKCFQANMNKD 135
>gi|332025033|gb|EGI65220.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 443
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 68/80 (85%), Positives = 69/80 (86%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDI C VCGDRSSGKHYGIYSCDGCSGFFKRSIH NR Y CKAQG KG CPIDKTH
Sbjct: 2 DRLLDILCDVCGDRSSGKHYGIYSCDGCSGFFKRSIHSNREYICKAQGAKKGRCPIDKTH 61
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF + MNKD
Sbjct: 62 RNQCRACRLAKCFEANMNKD 81
>gi|307203729|gb|EFN82689.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 547
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/79 (84%), Positives = 68/79 (86%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
RLLDI C VCGDRSSGKHYGIYSCDGCSGFFKRSIH NR Y CKAQG KG CPIDKTHR
Sbjct: 1 RLLDILCDVCGDRSSGKHYGIYSCDGCSGFFKRSIHSNREYICKAQGAKKGRCPIDKTHR 60
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KCF + MNKD
Sbjct: 61 NQCRACRLAKCFEANMNKD 79
>gi|357615819|gb|EHJ69847.1| hypothetical protein KGM_01261 [Danaus plexippus]
Length = 120
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/80 (87%), Positives = 74/80 (92%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DRLLDIPC VCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA G++KG CP+DKTH
Sbjct: 11 DRLLDIPCNVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAGGEMKGRCPVDKTH 70
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQCRACRL KCF + MNKD
Sbjct: 71 RNQCRACRLAKCFQANMNKD 90
>gi|321470051|gb|EFX81029.1| dissatisfaction-like protein [Daphnia pulex]
Length = 394
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/89 (79%), Positives = 75/89 (84%), Gaps = 9/89 (10%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDG---------CSGFFKRSIHRNRVYTCKAQGDLK 84
DRLLDIPCKVCGDRSSGKHYGI+SCDG CSGFFKRSIHR RVYTCKAQGDLK
Sbjct: 2 DRLLDIPCKVCGDRSSGKHYGIFSCDGKSWNILTDSCSGFFKRSIHRARVYTCKAQGDLK 61
Query: 85 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
CP+DKTHRNQCRACRL+KCF + MNKD
Sbjct: 62 NCCPVDKTHRNQCRACRLHKCFAANMNKD 90
>gi|157278483|ref|NP_001098343.1| nuclear receptor subfamily 2 group E member 1 [Oryzias latipes]
gi|9910805|sp|Q9YGL3.1|NR2E1_ORYLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|4468637|emb|CAB38085.1| tailless [Oryzias latipes]
Length = 396
Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 65/99 (65%), Positives = 75/99 (75%), Gaps = 7/99 (7%)
Query: 20 MSRPDGR-----DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRV 74
MS+P G D+ + R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR+
Sbjct: 1 MSKPTGSTSGCLDILNVKSSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRI 60
Query: 75 YTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
Y CK+ +G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 61 YLCKSGS--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 97
>gi|348524799|ref|XP_003449910.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Oreochromis niloticus]
Length = 396
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 65/99 (65%), Positives = 74/99 (74%), Gaps = 7/99 (7%)
Query: 20 MSRPDGR-----DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRV 74
MS+P G D+ + R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR
Sbjct: 1 MSKPTGSTSGCLDILNVKSSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRT 60
Query: 75 YTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
Y CK+ +G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 61 YVCKSGS--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 97
>gi|126310401|ref|XP_001368385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Monodelphis domestica]
Length = 385
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPTG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|57525699|ref|NP_001003608.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
gi|50418146|gb|AAH77146.1| Nuclear receptor subfamily 2, group E, member 1 [Danio rerio]
gi|116517486|gb|ABJ99095.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
Length = 396
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/99 (65%), Positives = 74/99 (74%), Gaps = 7/99 (7%)
Query: 20 MSRPDGR-----DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRV 74
MS+P G D+ + R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR
Sbjct: 1 MSKPAGSTSGCLDILNVKSSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRT 60
Query: 75 YTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
Y CK+ +G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 61 YVCKS--GTQGGCPVDKTHRNQCRACRLKKCLEVNMNKD 97
>gi|296198939|ref|XP_002746955.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Callithrix jacchus]
Length = 386
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|60828539|gb|AAX36846.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
Length = 386
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|284005564|ref|NP_001164794.1| nuclear receptor subfamily 2 group E member 1 [Oryctolagus
cuniculus]
gi|217038306|gb|ACJ76603.1| nuclear receptor subfamily 2 group E member 1 (predicted)
[Oryctolagus cuniculus]
Length = 385
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|395534716|ref|XP_003769385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Sarcophilus harrisii]
Length = 385
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|73973687|ref|XP_532253.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform 1
[Canis lupus familiaris]
gi|194216311|ref|XP_001502073.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Equus
caballus]
gi|335279315|ref|XP_003353327.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Sus
scrofa]
gi|190402236|gb|ACE77650.1| nuclear receptor subfamily 2, group E, member 1 homolog (predicted)
[Sorex araneus]
Length = 385
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|226526921|gb|ACO71279.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Dasypus novemcinctus]
Length = 385
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|183637194|gb|ACC64552.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Rhinolophus ferrumequinum]
Length = 385
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|4507537|ref|NP_003260.1| nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|281183082|ref|NP_001162457.1| nuclear receptor subfamily 2 group E member 1 [Papio anubis]
gi|388490051|ref|NP_001252896.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|114608752|ref|XP_527467.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
troglodytes]
gi|332259804|ref|XP_003278973.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Nomascus
leucogenys]
gi|344264555|ref|XP_003404357.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Loxodonta
africana]
gi|403289711|ref|XP_003935987.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Saimiri
boliviensis boliviensis]
gi|426354159|ref|XP_004044535.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Gorilla
gorilla gorilla]
gi|426354161|ref|XP_004044536.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Gorilla gorilla gorilla]
gi|9910804|sp|Q9Y466.1|NR2E1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=hTll
gi|11141399|gb|AAG31945.1|AF220532_1 orphan nuclear receptor [Homo sapiens]
gi|15705907|gb|AAL05871.1|AF411525_1 nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|2292902|emb|CAA73725.1| Tailless protein [Homo sapiens]
gi|20380429|gb|AAH28031.1| Nuclear receptor subfamily 2, group E, member 1 [Homo sapiens]
gi|61358419|gb|AAX41565.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
gi|119568770|gb|EAW48385.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_a
[Homo sapiens]
gi|164449656|gb|ABY56294.1| nuclear receptor subfamily 2, group E, member 1 (predicted) [Papio
anubis]
gi|166183798|gb|ABY84160.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callithrix jacchus]
gi|216409726|dbj|BAH02300.1| tailes-related receptor [Homo sapiens]
gi|261857884|dbj|BAI45464.1| nuclear receptor subfamily 2, group E, member 1 [synthetic
construct]
gi|325495503|gb|ADZ17357.1| nuclear receptor TLX [Homo sapiens]
gi|355562170|gb|EHH18802.1| hypothetical protein EGK_15469 [Macaca mulatta]
gi|380816050|gb|AFE79899.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|380816052|gb|AFE79900.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
Length = 385
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|169409578|gb|ACA57920.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callicebus moloch]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|397507811|ref|XP_003824377.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
paniscus]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|197215627|gb|ACH53021.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Otolemur garnettii]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|297678833|ref|XP_002817264.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pongo
abelii]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|22726205|ref|NP_689415.1| nuclear receptor subfamily 2 group E member 1 [Mus musculus]
gi|6094489|sp|Q64104.1|NR2E1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=mTll
gi|2143507|pir||I53158 orphan nuclear receptor homolog - mouse
gi|998678|gb|AAB34090.1| orphan nuclear receptor homolog [Mus sp.]
gi|21668101|gb|AAM74229.1| nuclear receptor 2E1 [Mus musculus]
gi|34849469|gb|AAH57104.1| Nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
gi|74205430|dbj|BAE21029.1| unnamed protein product [Mus musculus]
gi|148673056|gb|EDL05003.1| nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|348560562|ref|XP_003466082.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cavia porcellus]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|300798463|ref|NP_001179582.1| nuclear receptor subfamily 2 group E member 1 [Bos taurus]
gi|426234591|ref|XP_004011277.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Ovis
aries]
gi|296484166|tpg|DAA26281.1| TPA: nuclear receptor subfamily 2, group E, member 1 [Bos taurus]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|149046956|gb|EDL99704.1| rCG58537 [Rattus norvegicus]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|45384018|ref|NP_990501.1| nuclear receptor subfamily 2 group E member 1 [Gallus gallus]
gi|6094488|sp|Q91379.1|NR2E1_CHICK RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|619338|gb|AAB31467.1| nuclear receptor TLX [Gallus gallus]
gi|745066|prf||2015392A nuclear receptor Tlx
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|395816268|ref|XP_003781627.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Otolemur
garnettii]
Length = 385
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|348524801|ref|XP_003449911.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Oreochromis niloticus]
Length = 385
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPTG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GS--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|301763932|ref|XP_002917384.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Ailuropoda melanoleuca]
Length = 380
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|300676833|gb|ADK26709.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
gi|300676928|gb|ADK26800.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
Length = 385
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|307170857|gb|EFN62968.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 226
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 68/79 (86%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
RLLDI C VCGDRSSGKHYGIYSCDGCSGFFKRSIH NR Y CKAQG KG CPIDKTHR
Sbjct: 53 RLLDILCDVCGDRSSGKHYGIYSCDGCSGFFKRSIHSNREYICKAQGAKKGRCPIDKTHR 112
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KCF + MNKD
Sbjct: 113 NQCRACRLAKCFEANMNKD 131
>gi|147904762|ref|NP_001079280.1| nuclear receptor subfamily 2 group E member 1 [Xenopus laevis]
gi|6094490|sp|P70052.1|NR2E1_XENLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=xTLL
gi|1527203|gb|AAB07732.1| orphan nuclear receptor XTLL [Xenopus laevis]
Length = 386
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 71/94 (75%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSNPTG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRSYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>gi|410916893|ref|XP_003971921.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Takifugu rubripes]
gi|21538834|gb|AAM61763.1|AF461063_2 nuclear receptor 2E1 [Takifugu rubripes]
Length = 396
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 61/87 (70%), Positives = 69/87 (79%), Gaps = 2/87 (2%)
Query: 27 DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 86
D+ + R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G
Sbjct: 13 DILNVKSSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGS--QGG 70
Query: 87 CPIDKTHRNQCRACRLNKCFMSAMNKD 113
CP+DKTHRNQCRACRL KC MNKD
Sbjct: 71 CPVDKTHRNQCRACRLKKCLEVNMNKD 97
>gi|440904093|gb|ELR54654.1| Nuclear receptor subfamily 2 group E member 1, partial [Bos
grunniens mutus]
Length = 396
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 64/95 (67%), Positives = 71/95 (74%), Gaps = 2/95 (2%)
Query: 19 FMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCK 78
F + P V A R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK
Sbjct: 5 FHTHPHPFLVFPAISGRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCK 64
Query: 79 AQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+ +G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 65 SGN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 97
>gi|256080688|ref|XP_002576610.1| nuclear receptor [Schistosoma mansoni]
gi|350645587|emb|CCD59712.1| nuclear receptor, putative [Schistosoma mansoni]
Length = 316
Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 61/79 (77%), Positives = 71/79 (89%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
RLL+IPC VCGDRS+GKHYG+YSCDGCSGFFKRSIH+NR YTCKA G+LKG C ID+ HR
Sbjct: 7 RLLNIPCGVCGDRSTGKHYGVYSCDGCSGFFKRSIHKNRSYTCKASGNLKGKCTIDRHHR 66
Query: 95 NQCRACRLNKCFMSAMNKD 113
N CRACRLNKCF++ MN++
Sbjct: 67 NHCRACRLNKCFLAQMNEE 85
>gi|410959792|ref|XP_003986483.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Felis
catus]
Length = 422
Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 47 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 104
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 105 NQCRACRLKKCLEVNMNKD 123
>gi|410916891|ref|XP_003971920.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Takifugu rubripes]
Length = 385
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 61/84 (72%), Positives = 68/84 (80%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+ S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+
Sbjct: 5 AGSTSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGS--QGGCPV 62
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KC MNKD
Sbjct: 63 DKTHRNQCRACRLKKCLEVNMNKD 86
>gi|431838686|gb|ELK00616.1| Nuclear receptor subfamily 2 group E member 1 [Pteropus alecto]
Length = 408
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 33 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 90
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 91 NQCRACRLKKCLEVNMNKD 109
>gi|47077588|dbj|BAD18677.1| unnamed protein product [Homo sapiens]
gi|119568771|gb|EAW48386.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_b
[Homo sapiens]
Length = 422
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 47 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 104
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 105 NQCRACRLKKCLEVNMNKD 123
>gi|327261729|ref|XP_003215681.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Anolis carolinensis]
Length = 382
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 7 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 64
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 65 NQCRACRLKKCLEVNMNKD 83
>gi|47224633|emb|CAG03617.1| unnamed protein product [Tetraodon nigroviridis]
Length = 393
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 3 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGS--QGGCPVDKTHR 60
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 61 NQCRACRLKKCLEVNMNKD 79
>gi|16797870|gb|AAL29193.1|AF323680_1 nuclear receptor Amtll [Acropora millepora]
Length = 380
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/93 (70%), Positives = 73/93 (78%), Gaps = 10/93 (10%)
Query: 21 SRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ 80
S+P+GR LLDIPCKVCGDRSSGKHYGIY+CDGCSGFFKRSI RNR YTC+A
Sbjct: 18 SKPNGR---------LLDIPCKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRAT 68
Query: 81 GDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
KG+CP+DK HRNQCR+CRL KCF MNKD
Sbjct: 69 NG-KGNCPVDKIHRNQCRSCRLKKCFEVTMNKD 100
>gi|156376476|ref|XP_001630386.1| predicted protein [Nematostella vectensis]
gi|156217406|gb|EDO38323.1| predicted protein [Nematostella vectensis]
Length = 358
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 69/79 (87%), Gaps = 1/79 (1%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
RLLDIPCKVCGDRSSGKHYGIY+CDGCSGFFKRSI RNR YTC+A KG+CP+DK HR
Sbjct: 2 RLLDIPCKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNG-KGNCPVDKIHR 60
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCR+CRL KCF +MNKD
Sbjct: 61 NQCRSCRLKKCFDVSMNKD 79
>gi|163954969|ref|NP_001106668.1| nuclear receptor subfamily 2, group E, member 1 [Rattus norvegicus]
gi|163658507|gb|ABY28383.1| tailless-like protein [Rattus norvegicus]
Length = 385
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 63/93 (67%), Positives = 70/93 (75%), Gaps = 8/93 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSS KHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSRKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNK 112
+G CP+DKTHRNQCRACRL KC MNK
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNK 85
>gi|354469258|ref|XP_003497047.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cricetulus griseus]
Length = 518
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/78 (75%), Positives = 65/78 (83%), Gaps = 2/78 (2%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 95
+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHRN
Sbjct: 144 ILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHRN 201
Query: 96 QCRACRLNKCFMSAMNKD 113
QCRACRL KC MNKD
Sbjct: 202 QCRACRLKKCLEVNMNKD 219
>gi|259013325|ref|NP_001158362.1| tailless [Saccoglossus kowalevskii]
gi|32307797|gb|AAP79295.1| tailless [Saccoglossus kowalevskii]
Length = 361
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 70/85 (82%), Gaps = 2/85 (2%)
Query: 29 TSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
T+ + R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK +G+ G CP
Sbjct: 4 TATTSSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRQYVCKNKGN--GPCP 61
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
IDKTHRNQCRACRL KC MNKD
Sbjct: 62 IDKTHRNQCRACRLKKCVQVDMNKD 86
>gi|301615499|ref|XP_002937209.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Xenopus (Silurana) tropicalis]
Length = 405
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 59/79 (74%), Positives = 65/79 (82%), Gaps = 2/79 (2%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G C +DKTHR
Sbjct: 29 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRSYVCKSGN--QGGCLVDKTHR 86
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 87 NQCRACRLKKCLEVNMNKD 105
>gi|351702072|gb|EHB04991.1| Nuclear receptor subfamily 2 group E member 1 [Heterocephalus
glaber]
Length = 445
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 67/81 (82%), Gaps = 2/81 (2%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKT
Sbjct: 68 RGRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKT 125
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
HRNQCRACRL KC MNKD
Sbjct: 126 HRNQCRACRLKKCLEVNMNKD 146
>gi|391333770|ref|XP_003741283.1| PREDICTED: protein tailless-like [Metaseiulus occidentalis]
Length = 411
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/78 (71%), Positives = 63/78 (80%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 95
LLDIPCKVC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK +G CP+DKTHRN
Sbjct: 38 LLDIPCKVCFDHSSGKHYGIYACDGCAGFFKRSIRRNRHYICKGRGTQANQCPVDKTHRN 97
Query: 96 QCRACRLNKCFMSAMNKD 113
QCRACRL KC + MN++
Sbjct: 98 QCRACRLRKCLEAGMNRE 115
>gi|449497928|ref|XP_002192943.2| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Taeniopygia guttata]
Length = 532
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 156 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 213
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 214 NQCRACRLKKCLEVNMNKD 232
>gi|339238405|ref|XP_003380757.1| protein tailless [Trichinella spiralis]
gi|316976296|gb|EFV59616.1| protein tailless [Trichinella spiralis]
Length = 445
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 57/79 (72%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD-LKGHCPIDKTHR 94
LLDIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+G +G C +DKTHR
Sbjct: 35 LLDIPCKVCEDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKARGTGQEGSCTVDKTHR 94
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL+KC MNK+
Sbjct: 95 NQCRACRLSKCLQVGMNKE 113
>gi|312382715|gb|EFR28076.1| hypothetical protein AND_04416 [Anopheles darlingi]
Length = 542
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 59/104 (56%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Query: 10 QIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSI 69
Q P P+ R + ++S L D+PCKVC D SSGKHYGIY+CDGC+GFFKRSI
Sbjct: 44 QSPVSSPELIDPRYGHMRIAASSSRILYDVPCKVCRDHSSGKHYGIYACDGCAGFFKRSI 103
Query: 70 HRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
R+R Y CK++ ++ C +DKTHRNQCRACRL KCF MNKD
Sbjct: 104 RRSRQYVCKSKAEVA--CVVDKTHRNQCRACRLKKCFEVGMNKD 145
>gi|118788495|ref|XP_316782.3| AGAP000819-PA [Anopheles gambiae str. PEST]
gi|116126135|gb|EAA12047.4| AGAP000819-PA [Anopheles gambiae str. PEST]
Length = 436
Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats.
Identities = 59/104 (56%), Positives = 73/104 (70%), Gaps = 2/104 (1%)
Query: 10 QIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSI 69
Q P P+ R + + ++S L D+PCKVC D SSGKHYGIY+CDGC+GFFKRSI
Sbjct: 2 QSPVSSPELIDPRFNHMRIPASSSRILYDVPCKVCRDHSSGKHYGIYACDGCAGFFKRSI 61
Query: 70 HRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
R+R Y CK++ ++ C +DKTHRNQCRACRL KCF MNKD
Sbjct: 62 RRSRQYVCKSKSEVP--CVVDKTHRNQCRACRLKKCFEVGMNKD 103
>gi|390341307|ref|XP_794533.3| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Strongylocentrotus purpuratus]
Length = 410
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK + G CP+DKTHR
Sbjct: 35 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKNRSG-GGPCPVDKTHR 93
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 94 NQCRACRLKKCLQVDMNKD 112
>gi|340712958|ref|XP_003395019.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 405
Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats.
Identities = 61/85 (71%), Positives = 67/85 (78%), Gaps = 3/85 (3%)
Query: 30 SASRDRLL-DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
SAS R+L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ KG C
Sbjct: 25 SASSSRILYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKS--KGGCM 82
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
+DKTHRNQCRACRL KC MNKD
Sbjct: 83 VDKTHRNQCRACRLAKCIQVGMNKD 107
>gi|350420018|ref|XP_003492371.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 405
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 61/85 (71%), Positives = 67/85 (78%), Gaps = 3/85 (3%)
Query: 30 SASRDRLL-DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
SAS R+L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ KG C
Sbjct: 25 SASSSRILYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKS--KGGCM 82
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
+DKTHRNQCRACRL KC MNKD
Sbjct: 83 VDKTHRNQCRACRLAKCIHVGMNKD 107
>gi|380021453|ref|XP_003694579.1| PREDICTED: protein tailless-like [Apis florea]
Length = 400
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 59/88 (67%), Positives = 68/88 (77%), Gaps = 2/88 (2%)
Query: 26 RDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKG 85
+ V ++S L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ KG
Sbjct: 16 QKVPASSSRILYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKS--KG 73
Query: 86 HCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C +DKTHRNQCRACRL KC + MNKD
Sbjct: 74 GCMVDKTHRNQCRACRLAKCIQAGMNKD 101
>gi|328782478|ref|XP_001121187.2| PREDICTED: protein tailless [Apis mellifera]
Length = 400
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/88 (67%), Positives = 68/88 (77%), Gaps = 2/88 (2%)
Query: 26 RDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKG 85
+ V ++S L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ KG
Sbjct: 16 QKVPASSSRILYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKS--KG 73
Query: 86 HCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C +DKTHRNQCRACRL KC + MNKD
Sbjct: 74 GCMVDKTHRNQCRACRLAKCIQAGMNKD 101
>gi|405978560|gb|EKC42940.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 380
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 87
V S L DIPCKVC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK++G +G C
Sbjct: 4 VAGTSSRILTDIPCKVCQDHSSGKHYGIYACDGCAGFFKRSIRRNRQYICKSRG--QGTC 61
Query: 88 PIDKTHRNQCRACRLNKCFMSAMNKD 113
P+DKTHRNQCRACRL KC + MNKD
Sbjct: 62 PVDKTHRNQCRACRLKKCLEAGMNKD 87
>gi|193575673|ref|XP_001945915.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 396
Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 70/87 (80%), Gaps = 3/87 (3%)
Query: 28 VTSASRDRLL-DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 86
+T + R+L DIPCKVC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK++ + G
Sbjct: 12 ITKPTNSRILYDIPCKVCKDFSSGKHYGIYACDGCAGFFKRSIRRNRQYICKSKSE--GA 69
Query: 87 CPIDKTHRNQCRACRLNKCFMSAMNKD 113
CP+DKTHRNQCRACRL KC +S MNKD
Sbjct: 70 CPVDKTHRNQCRACRLRKCMLSGMNKD 96
>gi|383856816|ref|XP_003703903.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 397
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 60/92 (65%), Positives = 69/92 (75%), Gaps = 3/92 (3%)
Query: 23 PDGRDVTSASRDRLL-DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQG 81
P + AS R+L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+
Sbjct: 12 PVAQPKMPASSSRILYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKS 71
Query: 82 DLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+ G C +DKTHRNQCRACRL KC + MNKD
Sbjct: 72 E--GGCMVDKTHRNQCRACRLAKCIQAGMNKD 101
>gi|194765110|ref|XP_001964670.1| GF22927 [Drosophila ananassae]
gi|190614942|gb|EDV30466.1| GF22927 [Drosophila ananassae]
Length = 456
Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 80
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 81 DKTHRNQCRACRLRKCFEVGMNKD 104
>gi|125772581|ref|XP_001357592.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|195159108|ref|XP_002020424.1| GL13521 [Drosophila persimilis]
gi|54637324|gb|EAL26726.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|194117193|gb|EDW39236.1| GL13521 [Drosophila persimilis]
Length = 454
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 80
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 81 DKTHRNQCRACRLRKCFEVGMNKD 104
>gi|307213614|gb|EFN89000.1| Nuclear receptor subfamily 2 group E member 1 [Harpegnathos
saltator]
Length = 415
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 56/78 (71%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 95
L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ + G C +DKTHRN
Sbjct: 40 LYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSE--GGCMVDKTHRN 97
Query: 96 QCRACRLNKCFMSAMNKD 113
QCRACRL KC + MNKD
Sbjct: 98 QCRACRLAKCIQAGMNKD 115
>gi|195390875|ref|XP_002054093.1| tailless [Drosophila virilis]
gi|194152179|gb|EDW67613.1| tailless [Drosophila virilis]
Length = 450
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 80
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 81 DKTHRNQCRACRLRKCFEVGMNKD 104
>gi|242013777|ref|XP_002427577.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
gi|212511992|gb|EEB14839.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
Length = 403
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 95
L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI R+R Y CKA+ + G C +DKTHRN
Sbjct: 11 LYDIPCKVCQDHSSGKHYGIFACDGCAGFFKRSIRRSRQYLCKAKSE--GSCTVDKTHRN 68
Query: 96 QCRACRLNKCFMSAMNKD 113
QCRACRL KC + MNKD
Sbjct: 69 QCRACRLKKCVEAGMNKD 86
>gi|195505298|ref|XP_002099444.1| GE10907 [Drosophila yakuba]
gi|194185545|gb|EDW99156.1| GE10907 [Drosophila yakuba]
Length = 452
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 80
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 81 DKTHRNQCRACRLRKCFEVGMNKD 104
>gi|195061143|ref|XP_001995934.1| GH14219 [Drosophila grimshawi]
gi|193891726|gb|EDV90592.1| GH14219 [Drosophila grimshawi]
Length = 445
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 80
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 81 DKTHRNQCRACRLRKCFEVGMNKD 104
>gi|194905186|ref|XP_001981146.1| GG11781 [Drosophila erecta]
gi|190655784|gb|EDV53016.1| GG11781 [Drosophila erecta]
Length = 438
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 80
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 81 DKTHRNQCRACRLRKCFEVGMNKD 104
>gi|6094487|sp|O16845.1|TLL_DROVI RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|2440021|gb|AAB71370.1| tailless protein [Drosophila virilis]
Length = 450
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 80
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 81 DKTHRNQCRACRLRKCFEVGMNKD 104
>gi|17864126|ref|NP_524596.1| tailless [Drosophila melanogaster]
gi|135913|sp|P18102.1|TLL_DROME RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|158604|gb|AAA28936.1| tailless (tll) protein [Drosophila melanogaster]
gi|2440022|gb|AAB71371.1| tailless protein [Drosophila melanogaster]
gi|7301986|gb|AAF57091.1| tailless [Drosophila melanogaster]
gi|66571248|gb|AAY51589.1| IP01133p [Drosophila melanogaster]
gi|220943320|gb|ACL84203.1| tll-PA [synthetic construct]
gi|220953302|gb|ACL89194.1| tll-PA [synthetic construct]
Length = 452
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 80
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 81 DKTHRNQCRACRLRKCFEVGMNKD 104
>gi|195575179|ref|XP_002105557.1| GD21550 [Drosophila simulans]
gi|194201484|gb|EDX15060.1| GD21550 [Drosophila simulans]
Length = 452
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/83 (68%), Positives = 64/83 (77%), Gaps = 2/83 (2%)
Query: 31 ASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 90
AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +D
Sbjct: 24 ASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVD 81
Query: 91 KTHRNQCRACRLNKCFMSAMNKD 113
KTHRNQCRACRL KCF MNKD
Sbjct: 82 KTHRNQCRACRLRKCFEVGMNKD 104
>gi|260834489|ref|XP_002612243.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
gi|229297618|gb|EEN68252.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
Length = 375
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 31 ASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 90
+S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI NR YTCK+ CP+D
Sbjct: 3 SSSGRILDIPCKVCGDRSSGKHYGVYTCDGCSGFFKRSIRHNRNYTCKSPSS--APCPVD 60
Query: 91 KTHRNQCRACRLNKCFMSAMNKD 113
K+ RNQCRACRL +CF MNKD
Sbjct: 61 KSRRNQCRACRLQRCFQVNMNKD 83
>gi|156536461|gb|ABU80385.1| tailless, partial [Drosophila littoralis]
Length = 389
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 16 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 73
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 74 DKTHRNQCRACRLRKCFEVGMNKD 97
>gi|344242733|gb|EGV98836.1| Nuclear receptor subfamily 2 group E member 1 [Cricetulus griseus]
Length = 323
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 62/75 (82%), Gaps = 2/75 (2%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHRNQCR
Sbjct: 1 IPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHRNQCR 58
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC MNKD
Sbjct: 59 ACRLKKCLEVNMNKD 73
>gi|121484050|gb|ABM54351.1| NR2E1 [Pan paniscus]
gi|122892562|gb|ABM67332.1| NR2E1 [Hylobates klossii]
Length = 77
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 1 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 58
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 59 NQCRACRLKKCLEVNMNKD 77
>gi|156536463|gb|ABU80386.1| tailless, partial [Drosophila montana]
Length = 389
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 16 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 73
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 74 DKTHRNQCRACRLRKCFEVGMNKD 97
>gi|57231804|gb|AAW47615.1| tailless [Drosophila virilis]
gi|57231808|gb|AAW47617.1| tailless [Drosophila americana]
gi|57231812|gb|AAW47619.1| tailless [Drosophila americana]
gi|57231814|gb|AAW47620.1| tailless [Drosophila americana]
gi|57231816|gb|AAW47621.1| tailless [Drosophila americana]
gi|57231818|gb|AAW47622.1| tailless [Drosophila americana]
gi|57231820|gb|AAW47623.1| tailless [Drosophila americana]
Length = 389
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 16 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 73
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 74 DKTHRNQCRACRLRKCFEVGMNKD 97
>gi|57231806|gb|AAW47616.1| tailless [Drosophila americana]
Length = 389
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 16 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 73
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 74 DKTHRNQCRACRLRKCFEVGMNKD 97
>gi|57231810|gb|AAW47618.1| tailless [Drosophila americana]
Length = 389
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 16 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 73
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 74 DKTHRNQCRACRLRKCFEVGMNKD 97
>gi|57231822|gb|AAW47624.1| tailless [Drosophila ezoana]
Length = 389
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 16 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 73
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 74 DKTHRNQCRACRLRKCFEVGMNKD 97
>gi|307185619|gb|EFN71557.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 373
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 56/78 (71%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 95
L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ + G C +DKTHRN
Sbjct: 1 LYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSE--GGCMVDKTHRN 58
Query: 96 QCRACRLNKCFMSAMNKD 113
QCRACRL KC + MNKD
Sbjct: 59 QCRACRLAKCIQAGMNKD 76
>gi|332021198|gb|EGI61583.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 396
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/94 (65%), Positives = 71/94 (75%), Gaps = 3/94 (3%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS P + S+SR L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA
Sbjct: 11 MSVPPPKMPASSSRI-LYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKA 69
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+ + G C +DKTHRNQCRACRL KC + MNKD
Sbjct: 70 KSE--GGCMVDKTHRNQCRACRLAKCIQAGMNKD 101
>gi|86515358|ref|NP_001034502.1| tailless [Tribolium castaneum]
gi|8096685|gb|AAF71999.1|AF219117_1 tailless ortholog [Tribolium castaneum]
Length = 406
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
Query: 29 TSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
+ +S R+LDIPCKVCGD SSGKHY I++CDGC+GFFKRSI RNR Y CKA+ + G C
Sbjct: 26 SPSSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDE--GSCI 83
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
IDKTHRNQCRACRL KC MNKD
Sbjct: 84 IDKTHRNQCRACRLKKCQNVGMNKD 108
>gi|270002751|gb|EEZ99198.1| tailless [Tribolium castaneum]
Length = 406
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
Query: 29 TSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
+ +S R+LDIPCKVCGD SSGKHY I++CDGC+GFFKRSI RNR Y CKA+ + G C
Sbjct: 26 SPSSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDE--GSCI 83
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
IDKTHRNQCRACRL KC MNKD
Sbjct: 84 IDKTHRNQCRACRLKKCQNVGMNKD 108
>gi|443724903|gb|ELU12704.1| hypothetical protein CAPTEDRAFT_226190 [Capitella teleta]
Length = 393
Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 64/78 (82%), Gaps = 2/78 (2%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 95
L+DIPCKVC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK++ +G CP+DKTHRN
Sbjct: 9 LVDIPCKVCSDHSSGKHYGIYACDGCAGFFKRSIRRNRQYICKSRS--QGLCPVDKTHRN 66
Query: 96 QCRACRLNKCFMSAMNKD 113
QCRACRL KC MNKD
Sbjct: 67 QCRACRLKKCVECGMNKD 84
>gi|405978561|gb|EKC42941.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 388
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 64/78 (82%), Gaps = 2/78 (2%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 95
L D+PCKVC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK++ K CP+DKTHRN
Sbjct: 12 LTDVPCKVCQDHSSGKHYGIYACDGCAGFFKRSIRRNRQYVCKSRNQDK--CPVDKTHRN 69
Query: 96 QCRACRLNKCFMSAMNKD 113
QCRACRLNKC S MN+D
Sbjct: 70 QCRACRLNKCVKSGMNRD 87
>gi|308491334|ref|XP_003107858.1| CRE-NHR-67 protein [Caenorhabditis remanei]
gi|308249805|gb|EFO93757.1| CRE-NHR-67 protein [Caenorhabditis remanei]
Length = 422
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 68/87 (78%), Gaps = 1/87 (1%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL-KGH 86
+T+ S LLD+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK +G+ +G
Sbjct: 8 MTAPSSRILLDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNKGNFDEGR 67
Query: 87 CPIDKTHRNQCRACRLNKCFMSAMNKD 113
C +DKTHRNQCRACRL KC MNKD
Sbjct: 68 CIVDKTHRNQCRACRLRKCLEIGMNKD 94
>gi|297522148|gb|ADI44343.1| tailless protein [Clogmia albipunctata]
Length = 437
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 73/104 (70%), Gaps = 11/104 (10%)
Query: 11 IPPRYPQYFMSRPDGRDVTSASRDRLL-DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSI 69
I PRY Q + AS R+L DIPCKVC D SSGKHYGIY+CDGC+GFFKRSI
Sbjct: 11 IDPRYNQL--------RIPPASSSRILYDIPCKVCRDHSSGKHYGIYACDGCAGFFKRSI 62
Query: 70 HRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
RNR Y+CK++ G C +DKTHRNQCRACRL KCF MN+D
Sbjct: 63 RRNRQYSCKSRS--SGQCIVDKTHRNQCRACRLRKCFDVGMNRD 104
>gi|8248247|gb|AAF74116.1|AF225975_1 Tc-tailless [Tribolium castaneum]
Length = 302
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
Query: 29 TSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
+ +S R+LDIPCKVCGD SSGKHY I++CDGC+GFFKRSI RNR Y CKA+ + G C
Sbjct: 26 SPSSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDE--GSCI 83
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
IDKTHRNQCRACRL KC MNKD
Sbjct: 84 IDKTHRNQCRACRLKKCQNVGMNKD 108
>gi|358254993|dbj|GAA56686.1| nuclear hormone receptor family member nhr-67 [Clonorchis sinensis]
Length = 1106
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/85 (63%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ-------GDLKGHCP 88
LLDIPC+VC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK + G C
Sbjct: 18 LLDIPCRVCKDHSSGKHYGIYACDGCAGFFKRSIRRNRQYACKNRTANGTKLSTAVGGCR 77
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
+DK+HRNQCRACRL KC MN+D
Sbjct: 78 VDKSHRNQCRACRLKKCLEVGMNRD 102
>gi|374670309|gb|AEZ56119.1| nuclear receptor TLX-1 [Schmidtea mediterranea]
Length = 373
Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats.
Identities = 57/82 (69%), Positives = 64/82 (78%), Gaps = 4/82 (4%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCK---AQGD-LKGHCPIDK 91
LLD+PCKVC D SSGKHYGIY+CDGC+GFFKRSI +R+Y CK +GD G C IDK
Sbjct: 9 LLDVPCKVCQDHSSGKHYGIYACDGCAGFFKRSIRHSRLYICKNKSIKGDSWIGICKIDK 68
Query: 92 THRNQCRACRLNKCFMSAMNKD 113
THRNQCRACRL KC S MNK+
Sbjct: 69 THRNQCRACRLQKCVDSGMNKE 90
>gi|59709814|gb|AAW88537.1| DSF [Schistosoma mansoni]
Length = 70
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 62/70 (88%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDRS+GKHYG+YSCDGCSGFFKRSIH+NR YTCKA G+LKG C ID+ HRN CRAC
Sbjct: 1 CGVCGDRSTGKHYGVYSCDGCSGFFKRSIHKNRSYTCKASGNLKGKCTIDRHHRNHCRAC 60
Query: 101 RLNKCFMSAM 110
RLNKCF++ M
Sbjct: 61 RLNKCFLAQM 70
>gi|341880402|gb|EGT36337.1| hypothetical protein CAEBREN_17159 [Caenorhabditis brenneri]
Length = 418
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL-KGHCPIDKTHR 94
LLD+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK +G +G C +DKTHR
Sbjct: 15 LLDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNKGGFDEGRCVVDKTHR 74
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 75 NQCRACRLRKCLEIGMNKD 93
>gi|170053585|ref|XP_001862743.1| tailless [Culex quinquefasciatus]
gi|167874052|gb|EDS37435.1| tailless [Culex quinquefasciatus]
Length = 397
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Query: 10 QIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSI 69
Q P P+ R + + ++S L D+PCKVC D SSGKHYGIY+CDGC+GFFKRSI
Sbjct: 2 QSPVSSPELMDPRYNHLRIPASSSRILYDVPCKVCRDHSSGKHYGIYACDGCAGFFKRSI 61
Query: 70 HRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
R+R Y CK++ + C +DKTHRNQCRACRL KCF MNKD
Sbjct: 62 RRSRQYVCKSKSE--TPCMVDKTHRNQCRACRLKKCFEVGMNKD 103
>gi|341894285|gb|EGT50220.1| CBN-NHR-67 protein [Caenorhabditis brenneri]
Length = 412
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL-KGHCPIDKTHR 94
LLD+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK +G +G C +DKTHR
Sbjct: 9 LLDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNKGGFDEGRCVVDKTHR 68
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 69 NQCRACRLRKCLEIGMNKD 87
>gi|297592502|gb|ADI47122.1| tailless [Polyrhachis vicina]
Length = 419
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 67/84 (79%), Gaps = 3/84 (3%)
Query: 31 ASRDRLL-DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
AS R+L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ + G C +
Sbjct: 20 ASSSRILYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSE--GGCMV 77
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KC + MNKD
Sbjct: 78 DKTHRNQCRACRLAKCIQAGMNKD 101
>gi|268536318|ref|XP_002633294.1| C. briggsae CBR-NHR-67 protein [Caenorhabditis briggsae]
Length = 426
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 64/79 (81%), Gaps = 1/79 (1%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL-KGHCPIDKTHR 94
L+D+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK +G+ +G C +DKTHR
Sbjct: 16 LVDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNKGNFDEGRCIVDKTHR 75
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 76 NQCRACRLRKCLEIGMNKD 94
>gi|157133704|ref|XP_001662973.1| tailless (tll) [Aedes aegypti]
gi|108881478|gb|EAT45703.1| AAEL003020-PA [Aedes aegypti]
Length = 397
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
Query: 10 QIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSI 69
Q P P+ R + ++S L D+PCKVC D SSGKHYGIY+CDGC+GFFKRSI
Sbjct: 2 QSPVSSPELMDPRYSHLRIPASSSRILYDVPCKVCRDHSSGKHYGIYACDGCAGFFKRSI 61
Query: 70 HRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
R+R Y CK++ + C +DKTHRNQCRACRL KCF MNKD
Sbjct: 62 RRSRQYVCKSKSE--TPCMVDKTHRNQCRACRLKKCFEVGMNKD 103
>gi|321478244|gb|EFX89201.1| tailless-like protein [Daphnia pulex]
Length = 337
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 95
L DIPC+VC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ + G C +DKTHRN
Sbjct: 5 LYDIPCRVCQDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSE--GACLVDKTHRN 62
Query: 96 QCRACRLNKCFMSAMNKD 113
QCRACRL KC MNKD
Sbjct: 63 QCRACRLRKCVEVGMNKD 80
>gi|256082368|ref|XP_002577429.1| zinc finger protein [Schistosoma mansoni]
gi|353232857|emb|CCD80213.1| putative zinc finger protein [Schistosoma mansoni]
Length = 408
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 63/84 (75%), Gaps = 6/84 (7%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH------CPI 89
LLDIPC VC D SSGKHYGIY+CDGC+GFFKRSI RNR YTCK++G G C +
Sbjct: 6 LLDIPCHVCEDHSSGKHYGIYACDGCAGFFKRSIRRNRQYTCKSRGTTIGSKSGIVVCRV 65
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK+HRNQCRACRL KC MNKD
Sbjct: 66 DKSHRNQCRACRLTKCLEVGMNKD 89
>gi|195113207|ref|XP_002001159.1| GI22125 [Drosophila mojavensis]
gi|193917753|gb|EDW16620.1| GI22125 [Drosophila mojavensis]
Length = 450
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 80
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 81 DKTHRNQCRACRLRKCFEVGMNKD 104
>gi|55140659|gb|AAV41874.1| tailless [Musca domestica]
Length = 442
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 80
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 81 DKTHRNQCRACRLRKCFEVGMNKD 104
>gi|313246784|emb|CBY35651.1| unnamed protein product [Oikopleura dioica]
Length = 160
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 63/79 (79%), Gaps = 2/79 (2%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R+L++PC+VCGD SSGKHYG+Y+CDGCSGFFKRSI + R Y CK G ++G CPIDK HR
Sbjct: 9 RILEVPCRVCGDNSSGKHYGVYACDGCSGFFKRSIRKGRSYVCK--GIIQGQCPIDKAHR 66
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL C MN+D
Sbjct: 67 NQCRACRLEHCLKVRMNRD 85
>gi|313237532|emb|CBY12680.1| unnamed protein product [Oikopleura dioica]
Length = 155
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 63/79 (79%), Gaps = 2/79 (2%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R+L++PC+VCGD SSGKHYG+Y+CDGCSGFFKRSI + R Y CK G ++G CPIDK HR
Sbjct: 4 RILEVPCRVCGDNSSGKHYGVYACDGCSGFFKRSIRKGRSYVCK--GIIQGQCPIDKAHR 61
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL C MN+D
Sbjct: 62 NQCRACRLEHCLKVRMNRD 80
>gi|195452812|ref|XP_002073511.1| GK14159 [Drosophila willistoni]
gi|194169596|gb|EDW84497.1| GK14159 [Drosophila willistoni]
Length = 457
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 80
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 81 DKTHRNQCRACRLRKCFDVGMNKD 104
>gi|170589101|ref|XP_001899312.1| nuclear receptor NHR-67 [Brugia malayi]
gi|158593525|gb|EDP32120.1| nuclear receptor NHR-67, putative [Brugia malayi]
Length = 328
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ-GDLKGHCPIDKTHR 94
LLD+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK + G +G C +DKTHR
Sbjct: 21 LLDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNRGGGEEGKCLVDKTHR 80
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNK+
Sbjct: 81 NQCRACRLTKCLEIGMNKE 99
>gi|402585073|gb|EJW79013.1| tailless, partial [Wuchereria bancrofti]
Length = 312
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ-GDLKGHCPIDKTHR 94
LLD+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK + G +G C +DKTHR
Sbjct: 6 LLDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNRGGGEEGKCLVDKTHR 65
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNK+
Sbjct: 66 NQCRACRLTKCLEIGMNKE 84
>gi|324520018|gb|ADY47539.1| Nuclear hormone receptor family member nhr-67, partial [Ascaris
suum]
Length = 313
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ-GDLKGHCPIDKTHR 94
LLD+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK + G +G C +DKTHR
Sbjct: 18 LLDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNRGGGEEGKCLVDKTHR 77
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNK+
Sbjct: 78 NQCRACRLTKCLEIGMNKE 96
>gi|432861654|ref|XP_004069672.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 416
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/84 (61%), Positives = 61/84 (72%), Gaps = 3/84 (3%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S + R D+ CKVC D SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+
Sbjct: 31 SPRKGRGPDVLCKVCSDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAG---TGRCPV 87
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK HRNQC+ACRL KC S MNKD
Sbjct: 88 DKAHRNQCQACRLKKCLQSGMNKD 111
>gi|296803356|gb|ADH51741.1| putative tailless protein [Episyrphus balteatus]
Length = 418
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
Query: 29 TSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
T S L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK+Q K C
Sbjct: 22 TVTSSRILYHLPCKVCLDNSSGKHYGIYACDGCAGFFKRSIRRNRQYVCKSQK--KTLCV 79
Query: 89 IDKTHRNQCRACRLNKCFMSAMNK 112
+DK HRNQCRACRL KCF + MNK
Sbjct: 80 VDKAHRNQCRACRLKKCFDAGMNK 103
>gi|17541682|ref|NP_502094.1| Protein NHR-67 [Caenorhabditis elegans]
gi|17369901|sp|Q9XVV3.1|NHR67_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-67
gi|3874154|emb|CAA97428.1| Protein NHR-67 [Caenorhabditis elegans]
Length = 416
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD-LKGHCPIDKTHR 94
LLD+ C+VC D SSGKHY I+SCDGC+GFFKRSI R+R Y CK +G +G C +DKTHR
Sbjct: 16 LLDVDCRVCEDHSSGKHYSIFSCDGCAGFFKRSIRRHRQYVCKNKGSPSEGQCKVDKTHR 75
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 76 NQCRACRLRKCLEIGMNKD 94
>gi|449267650|gb|EMC78568.1| Photoreceptor-specific nuclear receptor [Columba livia]
Length = 406
Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 35 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---TGLCPVDKAHRNQCQAC 91
Query: 101 RLNKCFMSAMNKD 113
RL KC + MNKD
Sbjct: 92 RLKKCLQAGMNKD 104
>gi|28396034|gb|AAO39180.1| nuclear receptor NHR-67 [Caenorhabditis elegans]
Length = 409
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD-LKGHCPIDKTHR 94
LLD+ C+VC D SSGKHY I+SCDGC+GFFKRSI R+R Y CK +G +G C +DKTHR
Sbjct: 9 LLDVDCRVCEDHSSGKHYSIFSCDGCAGFFKRSIRRHRQYVCKNKGSPSEGQCKVDKTHR 68
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 69 NQCRACRLRKCLEIGMNKD 87
>gi|126272955|ref|XP_001371421.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Monodelphis domestica]
Length = 405
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 27 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---SGTCPVDKAHRNQCQAC 83
Query: 101 RLNKCFMSAMNKD 113
RL KC S MNKD
Sbjct: 84 RLRKCLQSGMNKD 96
>gi|224062203|ref|XP_002192483.1| PREDICTED: photoreceptor-specific nuclear receptor [Taeniopygia
guttata]
Length = 404
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 35 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---TGLCPVDKAHRNQCQAC 91
Query: 101 RLNKCFMSAMNKD 113
RL KC + MNKD
Sbjct: 92 RLKKCLQAGMNKD 104
>gi|45382987|ref|NP_989925.1| photoreceptor-specific nuclear receptor [Gallus gallus]
gi|15777197|gb|AAL05940.1| photoreceptor-specific nuclear receptor [Gallus gallus]
Length = 406
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 35 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---TGLCPVDKAHRNQCQAC 91
Query: 101 RLNKCFMSAMNKD 113
RL KC + MNKD
Sbjct: 92 RLKKCLQAGMNKD 104
>gi|327285350|ref|XP_003227397.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Anolis
carolinensis]
Length = 418
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 35 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---TGMCPVDKAHRNQCQAC 91
Query: 101 RLNKCFMSAMNKD 113
RL KC + MNKD
Sbjct: 92 RLKKCLQAGMNKD 104
>gi|432850556|ref|XP_004066809.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 431
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 47 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAG---TGMCPVDKAHRNQCQAC 103
Query: 101 RLNKCFMSAMNKD 113
RL KC + MNKD
Sbjct: 104 RLKKCLQAGMNKD 116
>gi|410912674|ref|XP_003969814.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Takifugu
rubripes]
Length = 431
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 45 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAG---TGMCPVDKAHRNQCQAC 101
Query: 101 RLNKCFMSAMNKD 113
RL KC + MNKD
Sbjct: 102 RLKKCLQAGMNKD 114
>gi|348505631|ref|XP_003440364.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 421
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/73 (65%), Positives = 56/73 (76%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVC D SSGKHYGI++C+GCSGFFKRS+ R VY C+A G CP+DK HRNQC+AC
Sbjct: 43 CKVCSDSSSGKHYGIFTCNGCSGFFKRSVRRRLVYRCQAG---NGRCPVDKAHRNQCQAC 99
Query: 101 RLNKCFMSAMNKD 113
RL KC + MNKD
Sbjct: 100 RLKKCLQAGMNKD 112
>gi|441617194|ref|XP_004088427.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Nomascus leucogenys]
Length = 562
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/89 (56%), Positives = 61/89 (68%), Gaps = 7/89 (7%)
Query: 25 GRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 84
G D T S + C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+
Sbjct: 187 GEDQTGVSPS----LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA--- 239
Query: 85 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
G CP+DK HRNQC+ACRL KC + MN+D
Sbjct: 240 GMCPVDKAHRNQCQACRLKKCLQAGMNQD 268
>gi|297697018|ref|XP_002825669.1| PREDICTED: photoreceptor-specific nuclear receptor [Pongo abelii]
Length = 614
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/89 (56%), Positives = 61/89 (68%), Gaps = 7/89 (7%)
Query: 25 GRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 84
G D T S + C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+
Sbjct: 239 GEDQTGVSAS----LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA--- 291
Query: 85 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
G CP+DK HRNQC+ACRL KC + MN+D
Sbjct: 292 GMCPVDKAHRNQCQACRLKKCLQAGMNQD 320
>gi|149692277|ref|XP_001495004.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Equus
caballus]
Length = 480
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 106 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 162
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 163 ACRLKKCLQAGMNQD 177
>gi|431893708|gb|ELK03529.1| Photoreceptor-specific nuclear receptor [Pteropus alecto]
Length = 417
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 33 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 89
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 90 ACRLKKCLQAGMNQD 104
>gi|7305323|ref|NP_038736.1| photoreceptor-specific nuclear receptor [Mus musculus]
gi|10720145|sp|Q9QXZ7.1|NR2E3_MOUSE RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|6651227|gb|AAF22228.1|AF148129_1 nuclear receptor [Mus musculus]
gi|7770295|gb|AAF69682.1|AF204053_1 photoreceptor specific nuclear receptor [Mus musculus]
gi|17028410|gb|AAH17521.1| Nuclear receptor subfamily 2, group E, member 3 [Mus musculus]
gi|26343545|dbj|BAC35429.1| unnamed protein product [Mus musculus]
gi|148694043|gb|EDL25990.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_c [Mus
musculus]
Length = 395
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 38 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 94
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 95 ACRLKKCLQAGMNQD 109
>gi|403276151|ref|XP_003929774.1| PREDICTED: photoreceptor-specific nuclear receptor [Saimiri
boliviensis boliviensis]
Length = 552
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 187 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 243
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 244 ACRLKKCLQAGMNQD 258
>gi|357627327|gb|EHJ77063.1| putative Orphan nuclear receptor NR2E1 [Danaus plexippus]
Length = 390
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 63/84 (75%), Gaps = 3/84 (3%)
Query: 31 ASRDRLL-DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
AS R+L D+PC VC D SSGKHYG+++CDGC+GFFKRS+ R+R Y CKA+ G C +
Sbjct: 8 ASSSRILYDVPCAVCRDHSSGKHYGVFACDGCAGFFKRSVRRDRRYACKARNS--GACLV 65
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK HRNQCRACRL KC MNKD
Sbjct: 66 DKAHRNQCRACRLAKCLDVGMNKD 89
>gi|263506139|sp|Q9TTF0.2|NR2E3_BOVIN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
Length = 411
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|260802126|ref|XP_002595944.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
gi|229281196|gb|EEN51956.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
Length = 369
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 56/73 (76%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G C IDK HRNQC+AC
Sbjct: 10 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---TGMCTIDKAHRNQCQAC 66
Query: 101 RLNKCFMSAMNKD 113
RL KC + MNKD
Sbjct: 67 RLKKCLAAGMNKD 79
>gi|147900594|ref|NP_001090633.1| nuclear receptor subfamily 2, group E, member 3 [Xenopus (Silurana)
tropicalis]
gi|115392210|gb|ABI96907.1| nuclear hormone receptor Nr2e3 [Xenopus (Silurana) tropicalis]
Length = 404
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 47/73 (64%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C+VCGD SSGKHYGI++C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 32 CRVCGDSSSGKHYGIFACNGCSGFFKRSVRRKLIYRCQAG---TGLCPVDKAHRNQCQAC 88
Query: 101 RLNKCFMSAMNKD 113
RL KC + MNKD
Sbjct: 89 RLKKCLQTGMNKD 101
>gi|109081780|ref|XP_001089693.1| PREDICTED: photoreceptor-specific nuclear receptor [Macaca mulatta]
Length = 448
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 97 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 153
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 154 ACRLKKCLQAGMNQD 168
>gi|269315847|ref|NP_001161372.1| photoreceptor-specific nuclear receptor [Bos taurus]
gi|296483590|tpg|DAA25705.1| TPA: photoreceptor-specific nuclear receptor [Bos taurus]
Length = 411
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|348583723|ref|XP_003477622.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Cavia
porcellus]
Length = 603
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 246 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRGLIYRCQVG---MGMCPVDKAHRNQCQ 302
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 303 ACRLKKCLQAGMNQD 317
>gi|7657395|ref|NP_055064.1| photoreceptor-specific nuclear receptor isoform b [Homo sapiens]
gi|8928275|sp|Q9Y5X4.1|NR2E3_HUMAN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|4726075|gb|AAD28301.1|AF121129_1 photoreceptor-specific nuclear receptor [Homo sapiens]
gi|7329721|emb|CAB82769.1| photoreceptor-specific nuclear receptor [Homo sapiens]
gi|119598282|gb|EAW77876.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a
[Homo sapiens]
gi|216409728|dbj|BAH02301.1| photoreceptor-specific nuclear receptor [Homo sapiens]
Length = 410
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 45 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 101
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 102 ACRLKKCLQAGMNQD 116
>gi|426379592|ref|XP_004056476.1| PREDICTED: photoreceptor-specific nuclear receptor [Gorilla gorilla
gorilla]
Length = 402
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|354473494|ref|XP_003498970.1| PREDICTED: photoreceptor-specific nuclear receptor [Cricetulus
griseus]
Length = 403
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 46 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 102
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 103 ACRLKKCLQAGMNQD 117
>gi|313212695|emb|CBY36633.1| unnamed protein product [Oikopleura dioica]
Length = 133
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 64/88 (72%), Gaps = 3/88 (3%)
Query: 19 FMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCK 78
F R G + + S R+L+ PC+VCGD SSGKHYG+Y+CDGCSGFFKRSI + R Y CK
Sbjct: 42 FFKRLAGTLIFAIS-GRILEFPCRVCGDNSSGKHYGVYACDGCSGFFKRSIRKGRSYVCK 100
Query: 79 AQGDLKGHCPIDKTHRNQCRACRLNKCF 106
G ++G CPIDK HRNQCRACRL C
Sbjct: 101 --GIIQGQCPIDKAHRNQCRACRLEHCL 126
>gi|114657918|ref|XP_001175025.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 3 [Pan
troglodytes]
Length = 402
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|351714332|gb|EHB17251.1| Photoreceptor-specific nuclear receptor [Heterocephalus glaber]
Length = 351
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRGLIYRCQVG---VGMCPVDKAHRNQCQ 93
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|432111648|gb|ELK34747.1| Photoreceptor-specific nuclear receptor [Myotis davidii]
Length = 404
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 30 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQVGA---GMCPVDKAHRNQCQ 86
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC MN+D
Sbjct: 87 ACRLKKCLQEGMNQD 101
>gi|344248427|gb|EGW04531.1| Photoreceptor-specific nuclear receptor [Cricetulus griseus]
Length = 395
Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 38 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 94
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 95 ACRLKKCLQAGMNQD 109
>gi|410960926|ref|XP_003987038.1| PREDICTED: photoreceptor-specific nuclear receptor [Felis catus]
Length = 411
Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC MN+D
Sbjct: 94 ACRLKKCLQEGMNQD 108
>gi|397495508|ref|XP_003818594.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
paniscus]
Length = 402
Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|296213607|ref|XP_002753344.1| PREDICTED: photoreceptor-specific nuclear receptor [Callithrix
jacchus]
Length = 368
Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|7706515|ref|NP_057430.1| photoreceptor-specific nuclear receptor isoform a [Homo sapiens]
gi|6651225|gb|AAF22227.1|AF148128_1 nuclear receptor [Homo sapiens]
gi|119598283|gb|EAW77877.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b
[Homo sapiens]
gi|325495505|gb|ADZ17358.1| photoreceptor cell-specific nuclear receptor variant 1 [Homo
sapiens]
Length = 367
Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 45 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 101
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 102 ACRLKKCLQAGMNQD 116
>gi|402874751|ref|XP_003901191.1| PREDICTED: photoreceptor-specific nuclear receptor [Papio anubis]
Length = 445
Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 80 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 136
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 137 ACRLKKCLQAGMNQD 151
>gi|313239642|emb|CBY14538.1| unnamed protein product [Oikopleura dioica]
Length = 85
Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 64/84 (76%), Gaps = 3/84 (3%)
Query: 28 VTSA-SRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 86
+TSA + R+L+ PC+VCGD SSGKHYG+Y+CDGCSGFFKRSI + R Y CK G ++G
Sbjct: 1 MTSARQKGRILEFPCRVCGDNSSGKHYGVYACDGCSGFFKRSIRKGRSYVCK--GIIQGQ 58
Query: 87 CPIDKTHRNQCRACRLNKCFMSAM 110
CPIDK HRNQCRACRL C +
Sbjct: 59 CPIDKAHRNQCRACRLEHCLKVKL 82
>gi|170031169|ref|XP_001843459.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167869235|gb|EDS32618.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 697
Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats.
Identities = 47/55 (85%), Positives = 51/55 (92%)
Query: 59 DGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+ CSGFFKRSIHRNRVYTCKA G+LKG CP+DKTHRNQCRACRL+KCF SAMNKD
Sbjct: 173 ESCSGFFKRSIHRNRVYTCKAAGELKGRCPVDKTHRNQCRACRLSKCFQSAMNKD 227
>gi|440897500|gb|ELR49170.1| Photoreceptor-specific nuclear receptor, partial [Bos grunniens
mutus]
Length = 427
Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 53 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 109
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 110 ACRLKKCLQAGMNQD 124
>gi|6681852|gb|AAF15392.2|AF107729_1 paraneoplastic retinopathy associated protein De [Bos taurus]
Length = 427
Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 53 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 109
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 110 ACRLKKCLQAGMNQD 124
>gi|348533763|ref|XP_003454374.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 426
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 5/92 (5%)
Query: 24 DGRDVTSASRDRLLD--IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQG 81
D R S + + L + CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A
Sbjct: 18 DSRGAKSPAPGKALSPALVCKVCGDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAG- 76
Query: 82 DLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
G CP+DK HRNQC+ACRL KC + MNKD
Sbjct: 77 --TGMCPVDKAHRNQCQACRLKKCLQAGMNKD 106
>gi|395822830|ref|XP_003784710.1| PREDICTED: photoreceptor-specific nuclear receptor [Otolemur
garnettii]
Length = 693
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 328 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 384
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 385 ACRLKKCLQAGMNQD 399
>gi|426233871|ref|XP_004010932.1| PREDICTED: photoreceptor-specific nuclear receptor [Ovis aries]
Length = 516
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 142 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 198
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 199 ACRLKKCLQAGMNQD 213
>gi|259013303|ref|NP_001158447.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
gi|196475499|gb|ACG76360.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
Length = 439
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/84 (58%), Positives = 60/84 (71%), Gaps = 3/84 (3%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S+S+ + C VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G C +
Sbjct: 48 SSSKRVTPGMACLVCGDVSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---TGLCTV 104
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK HRNQC+ACRL KC + MNKD
Sbjct: 105 DKAHRNQCQACRLKKCMQTGMNKD 128
>gi|55925261|ref|NP_001007369.1| photoreceptor-specific nuclear receptor [Danio rerio]
gi|55250124|gb|AAH85568.1| Zgc:103631 [Danio rerio]
gi|182889208|gb|AAI64789.1| Zgc:103631 protein [Danio rerio]
Length = 419
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 66/92 (71%), Gaps = 5/92 (5%)
Query: 24 DGRDVTSASRDRLLD--IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQG 81
D +D S + ++L+ + CKVC D SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A
Sbjct: 20 DSQDGKSPAPGKVLNTGLLCKVCSDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAG- 78
Query: 82 DLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
G CP+DK HRNQC+ACRL KC + MNKD
Sbjct: 79 --TGMCPVDKAHRNQCQACRLKKCLQAGMNKD 108
>gi|293349263|ref|XP_002727107.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Rattus
norvegicus]
Length = 397
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 38 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 94
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 95 ACRLKKCLQAGMNQD 109
>gi|158253732|gb|AAI54181.1| Zgc:103631 protein [Danio rerio]
Length = 344
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 67/95 (70%), Gaps = 5/95 (5%)
Query: 21 SRPDGRDVTSASRDRLLD--IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCK 78
S D +D S + ++L+ + CKVC D SSGKHYGIY+C+GCSGFFKRS+ R +Y C+
Sbjct: 17 STDDSQDGKSPAPGKVLNTGLLCKVCSDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQ 76
Query: 79 AQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
A G CP+DK HRNQC+ACRL KC + MNKD
Sbjct: 77 AG---TGMCPVDKAHRNQCQACRLKKCLQAGMNKD 108
>gi|242004528|ref|XP_002423135.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506081|gb|EEB10397.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 467
Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 47/82 (57%), Positives = 59/82 (71%), Gaps = 3/82 (3%)
Query: 32 SRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 91
++ ++L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK
Sbjct: 51 NKGKILGLSCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDK 107
Query: 92 THRNQCRACRLNKCFMSAMNKD 113
HRNQC+ACRL KC MNKD
Sbjct: 108 AHRNQCQACRLKKCLQMGMNKD 129
>gi|241707738|ref|XP_002403220.1| zinc finger, C4 type, putative [Ixodes scapularis]
gi|215505031|gb|EEC14525.1| zinc finger, C4 type, putative [Ixodes scapularis]
Length = 299
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 61/90 (67%), Gaps = 12/90 (13%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGC------------SGFFKRSIHRNRVYTCKAQGDL 83
LLDIPCKVC D SSGKHYGI++CDG + + +RSI RNR Y CKA+G
Sbjct: 17 LLDIPCKVCLDHSSGKHYGIFACDGAGPEYDCACPFFPTLWVQRSIRRNRQYVCKARGAA 76
Query: 84 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
CP+DKTHRNQCRACRL KC + MNK+
Sbjct: 77 ANGCPVDKTHRNQCRACRLRKCLEAGMNKE 106
>gi|339245569|ref|XP_003378710.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
gi|316972367|gb|EFV56045.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
Length = 547
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 47/73 (64%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DKTHRNQC+AC
Sbjct: 129 CSVCGDASSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGSCLVDKTHRNQCQAC 185
Query: 101 RLNKCFMSAMNKD 113
RL KC MNKD
Sbjct: 186 RLKKCIEMGMNKD 198
>gi|392350113|ref|XP_003750575.1| PREDICTED: photoreceptor-specific nuclear receptor-like, partial
[Rattus norvegicus]
Length = 293
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+AC
Sbjct: 40 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQAC 96
Query: 101 RLNKCFMSAMNKD 113
RL KC + MN+D
Sbjct: 97 RLKKCLQAGMNQD 109
>gi|291225515|ref|XP_002732745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 405
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 55/76 (72%), Gaps = 4/76 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
DIPC+VCGDRSSGKHYG+YSCDGC GFFKRS+ RN Y CK + C +D T RNQC
Sbjct: 20 DIPCRVCGDRSSGKHYGVYSCDGCRGFFKRSVRRNLAYVCKENNN----CIVDVTRRNQC 75
Query: 98 RACRLNKCFMSAMNKD 113
+ACR KC MNKD
Sbjct: 76 QACRFKKCLEVRMNKD 91
>gi|383861940|ref|XP_003706442.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Megachile
rotundata]
Length = 537
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/79 (60%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HR
Sbjct: 139 RSLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHR 195
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQC+ACRL KC MNKD
Sbjct: 196 NQCQACRLKKCMQMGMNKD 214
>gi|307199534|gb|EFN80135.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 538
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/79 (60%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HR
Sbjct: 140 RSLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHR 196
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQC+ACRL KC MNKD
Sbjct: 197 NQCQACRLKKCMQMGMNKD 215
>gi|345322078|ref|XP_001509616.2| PREDICTED: retinoic acid receptor RXR-like [Ornithorhynchus
anatinus]
Length = 203
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 99 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---TGMCPVDKAHRNQCQAC 155
Query: 101 RLNKCFMSAMNKD 113
RL KC + MNKD
Sbjct: 156 RLRKCLQAGMNKD 168
>gi|345487763|ref|XP_001606227.2| PREDICTED: photoreceptor-specific nuclear receptor [Nasonia
vitripennis]
Length = 551
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/84 (58%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S R L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +
Sbjct: 144 SGKPPRSLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVV 200
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK HRNQC+ACRL KC MNKD
Sbjct: 201 DKAHRNQCQACRLKKCMQMGMNKD 224
>gi|340709633|ref|XP_003393408.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
terrestris]
gi|350422440|ref|XP_003493165.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
impatiens]
Length = 540
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/79 (60%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HR
Sbjct: 142 RSLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHR 198
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQC+ACRL KC MNKD
Sbjct: 199 NQCQACRLKKCMQMGMNKD 217
>gi|328792134|ref|XP_396999.4| PREDICTED: photoreceptor-specific nuclear receptor [Apis mellifera]
gi|380028656|ref|XP_003698008.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Apis
florea]
Length = 538
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/79 (60%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HR
Sbjct: 140 RSLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHR 196
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQC+ACRL KC MNKD
Sbjct: 197 NQCQACRLKKCMQMGMNKD 215
>gi|332023687|gb|EGI63911.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 730
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/79 (60%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HR
Sbjct: 151 RSLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHR 207
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQC+ACRL KC MNKD
Sbjct: 208 NQCQACRLKKCMQMGMNKD 226
>gi|321465568|gb|EFX76568.1| hypothetical protein DAPPUDRAFT_106791 [Daphnia pulex]
Length = 310
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 61/84 (72%), Gaps = 3/84 (3%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
++S++ + + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A GHC I
Sbjct: 13 ASSKNAIPGLTCLVCGDSSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAGS---GHCVI 69
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK HRNQC+ACRL KC MNKD
Sbjct: 70 DKAHRNQCQACRLKKCLQMGMNKD 93
>gi|149041874|gb|EDL95715.1| rCG58152 [Rattus norvegicus]
Length = 240
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+AC
Sbjct: 40 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQAC 96
Query: 101 RLNKCFMSAMNKD 113
RL KC + MN+D
Sbjct: 97 RLKKCLQAGMNQD 109
>gi|443685615|gb|ELT89169.1| hypothetical protein CAPTEDRAFT_171557 [Capitella teleta]
Length = 437
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/75 (62%), Positives = 55/75 (73%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DKTHRNQC+
Sbjct: 64 LTCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGLCVVDKTHRNQCQ 120
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC MNKD
Sbjct: 121 ACRLKKCLQMGMNKD 135
>gi|156374224|ref|XP_001629708.1| predicted protein [Nematostella vectensis]
gi|156216714|gb|EDO37645.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 6/90 (6%)
Query: 26 RDVTSASRD--RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 83
RD T D + + + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC+A D
Sbjct: 11 RDSTETPEDSEKNVQVECAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRASRD- 69
Query: 84 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
CPID+ HRNQC+ CRL KC M ++
Sbjct: 70 ---CPIDQHHRNQCQYCRLKKCLKVGMRRE 96
>gi|221330285|ref|NP_611032.2| hormone receptor 51 [Drosophila melanogaster]
gi|220902230|gb|AAM68536.2| hormone receptor 51 [Drosophila melanogaster]
gi|291490761|gb|ADE06696.1| RT06950p1 [Drosophila melanogaster]
Length = 582
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 107 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHRNQ 163
Query: 97 CRACRLNKCFMSAMNKD 113
C+ACRL KC MNKD
Sbjct: 164 CQACRLKKCLQMGMNKD 180
>gi|118343705|ref|NP_001071673.1| nuclear receptor [Ciona intestinalis]
gi|70569140|dbj|BAE06356.1| nuclear receptor [Ciona intestinalis]
Length = 416
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/98 (48%), Positives = 63/98 (64%), Gaps = 7/98 (7%)
Query: 16 PQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
P SRP G +++ + + I C VCGD+SSGKHYG Y+C+GC FFKRS+ RN Y
Sbjct: 57 PDCSTSRPTGNTSSTSEKPQ---IECVVCGDKSSGKHYGQYTCEGCKSFFKRSVRRNLSY 113
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
TC+ + CPID+ HRNQC+ CRLNKC M ++
Sbjct: 114 TCRGNRN----CPIDQHHRNQCQYCRLNKCVKIGMRRE 147
>gi|256086655|ref|XP_002579512.1| photoreceptor-specific nuclear receptor related [Schistosoma
mansoni]
Length = 567
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 58/88 (65%), Gaps = 6/88 (6%)
Query: 26 RDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKG 85
RD+ + L C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G
Sbjct: 219 RDIKRVGHNGLY---CIVCGDISSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---NG 272
Query: 86 HCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C IDK HRNQC+ACR+ KC MNKD
Sbjct: 273 LCIIDKAHRNQCQACRMKKCIRMGMNKD 300
>gi|360045180|emb|CCD82728.1| photoreceptor-specific nuclear receptor related [Schistosoma
mansoni]
Length = 567
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 58/88 (65%), Gaps = 6/88 (6%)
Query: 26 RDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKG 85
RD+ + L C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G
Sbjct: 219 RDIKRVGHNGLY---CIVCGDISSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---NG 272
Query: 86 HCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C IDK HRNQC+ACR+ KC MNKD
Sbjct: 273 LCIIDKAHRNQCQACRMKKCIRMGMNKD 300
>gi|194754966|ref|XP_001959763.1| GF13031 [Drosophila ananassae]
gi|190621061|gb|EDV36585.1| GF13031 [Drosophila ananassae]
Length = 552
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 76 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQ 132
Query: 97 CRACRLNKCFMSAMNKD 113
C+ACRL KC MNKD
Sbjct: 133 CQACRLKKCLQMGMNKD 149
>gi|260828845|ref|XP_002609373.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
gi|229294729|gb|EEN65383.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
Length = 336
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPC++CGDRSSGKHYG+YSCDGC GFFKRSI RN Y CK G C +D RNQC+
Sbjct: 1 IPCRICGDRSSGKHYGVYSCDGCRGFFKRSIRRNLAYICKENGS----CVVDVARRNQCQ 56
Query: 99 ACRLNKCFMSAMNKD 113
ACR KC + MNKD
Sbjct: 57 ACRFKKCLDAQMNKD 71
>gi|270008090|gb|EFA04538.1| hormone receptor 83 [Tribolium castaneum]
Length = 1502
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 57/85 (67%), Gaps = 4/85 (4%)
Query: 28 VTSASRDRL-LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 86
V+ A R L +PC+VCGDRS GKHYG+Y CDGCS FFKRS+ RN +YTC + +G
Sbjct: 1216 VSPAPRRTLPTPVPCRVCGDRSFGKHYGVYCCDGCSCFFKRSVRRNIIYTCISG---EGR 1272
Query: 87 CPIDKTHRNQCRACRLNKCFMSAMN 111
C +DK RN C CRL +CF MN
Sbjct: 1273 CIVDKARRNWCPYCRLQRCFSVQMN 1297
>gi|324510528|gb|ADY44403.1| Photoreceptor-specific nuclear receptor [Ascaris suum]
Length = 471
Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQC+
Sbjct: 137 LSCAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGSCVVDKAHRNQCQ 193
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC MNKD
Sbjct: 194 ACRLKKCLNKGMNKD 208
>gi|312078554|ref|XP_003141789.1| hypothetical protein LOAG_06205 [Loa loa]
gi|307763047|gb|EFO22281.1| hypothetical protein LOAG_06205 [Loa loa]
Length = 493
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQC+
Sbjct: 160 LSCAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGSCIVDKAHRNQCQ 216
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC MNKD
Sbjct: 217 ACRLKKCLNKGMNKD 231
>gi|270011038|gb|EFA07486.1| hormone receptor 51 [Tribolium castaneum]
Length = 470
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 46/73 (63%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQC+AC
Sbjct: 83 CVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQCQAC 139
Query: 101 RLNKCFMSAMNKD 113
RL KC MNKD
Sbjct: 140 RLKKCLAMGMNKD 152
>gi|157115449|ref|XP_001658211.1| expressed protein (HR51) [Aedes aegypti]
gi|108876909|gb|EAT41134.1| AAEL007190-PA [Aedes aegypti]
Length = 594
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 15 YPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRV 74
+P ++ SA + + L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +
Sbjct: 101 WPSQHLTPVSEGGSASARKAQNLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLI 160
Query: 75 YTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
Y C+A G+C +DK HRNQC+ACRL KC MNKD
Sbjct: 161 YRCQAG---TGNCTVDKAHRNQCQACRLKKCLNMGMNKD 196
>gi|195119854|ref|XP_002004444.1| GI19610 [Drosophila mojavensis]
gi|193909512|gb|EDW08379.1| GI19610 [Drosophila mojavensis]
Length = 589
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 146 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHRNQ 202
Query: 97 CRACRLNKCFMSAMNKD 113
C+ACRL KC MNKD
Sbjct: 203 CQACRLKKCLQMGMNKD 219
>gi|221120884|ref|XP_002159396.1| PREDICTED: COUP transcription factor 2-like [Hydra magnipapillata]
Length = 500
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG+ +C+GC FFKRS+ RN YTC+A K +C ID+ HRNQC+
Sbjct: 164 IDCGVCGDKSSGKHYGVNTCEGCKSFFKRSVRRNLQYTCRA----KRNCSIDQHHRNQCQ 219
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC + M KD
Sbjct: 220 HCRLKKCLKAGMRKD 234
>gi|195486253|ref|XP_002091427.1| GE13645 [Drosophila yakuba]
gi|194177528|gb|EDW91139.1| GE13645 [Drosophila yakuba]
Length = 654
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 185 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHRNQ 241
Query: 97 CRACRLNKCFMSAMNKD 113
C+ACRL KC MNKD
Sbjct: 242 CQACRLKKCLQMGMNKD 258
>gi|358412829|ref|XP_002704762.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
gi|359066798|ref|XP_002688591.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
Length = 412
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 54 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 109
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 110 CQYCRLKKCFRVGMRKE 126
>gi|296486096|tpg|DAA28209.1| TPA: nuclear receptor subfamily 2, group F, member 6-like [Bos
taurus]
Length = 383
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 25 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 80
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 81 CQYCRLKKCFRVGMRKE 97
>gi|156389440|ref|XP_001634999.1| predicted protein [Nematostella vectensis]
gi|156222088|gb|EDO42936.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 55/75 (73%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGDR+SGKHYG+ +CDGC GFFKRS+ RN Y CK + D CPID RNQC+
Sbjct: 2 VQCRVCGDRASGKHYGVMTCDGCRGFFKRSVRRNLAYQCKEKND----CPIDVARRNQCQ 57
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KCF MN+D
Sbjct: 58 ACRLRKCFEMNMNRD 72
>gi|444726663|gb|ELW67187.1| Usher syndrome type-1C protein-binding protein 1 [Tupaia chinensis]
Length = 767
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQC+
Sbjct: 644 VDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQCQ 699
Query: 99 ACRLNKCFMSAMNKD 113
CRL KCF M K+
Sbjct: 700 YCRLKKCFRVGMRKE 714
>gi|348556980|ref|XP_003464298.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Cavia porcellus]
Length = 396
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKNFFKRSIRRNISYTCRSNRD----CQIDQHHRNQ 107
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|395847866|ref|XP_003796585.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Otolemur
garnettii]
Length = 410
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|311249241|ref|XP_003123537.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Sus
scrofa]
Length = 414
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 56 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 111
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 112 CQYCRLKKCFRVGMRKE 128
>gi|344282642|ref|XP_003413082.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Loxodonta
africana]
Length = 408
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>gi|114675979|ref|XP_001173294.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pan
troglodytes]
gi|410209646|gb|JAA02042.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410259260|gb|JAA17596.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410296550|gb|JAA26875.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410337621|gb|JAA37757.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
Length = 404
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|52345586|ref|NP_001004841.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
gi|49250456|gb|AAH74651.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/98 (48%), Positives = 62/98 (63%), Gaps = 8/98 (8%)
Query: 16 PQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
PQ MS P+ D + + C VCGD+SSGKHYG+++C+GC FFKRS+ RN Y
Sbjct: 33 PQGGMSDPEQGDEERPG----IQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSY 88
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
TC++ D C ID+ HRNQC+ CRL KCF M K+
Sbjct: 89 TCRSNRD----CQIDQHHRNQCQYCRLKKCFRVGMRKE 122
>gi|302563813|ref|NP_001181753.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 377
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 25 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 80
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 81 CQYCRLKKCFRVGMRKE 97
>gi|297276426|ref|XP_001114305.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
isoform 1 [Macaca mulatta]
Length = 404
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|194384988|dbj|BAG60906.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 25 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 80
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 81 CQYCRLKKCFRVGMRKE 97
>gi|148233922|ref|NP_001080181.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus laevis]
gi|33416678|gb|AAH56043.1| Nr2f6 protein [Xenopus laevis]
Length = 389
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/98 (48%), Positives = 62/98 (63%), Gaps = 8/98 (8%)
Query: 16 PQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
PQ MS P+ D + + C VCGD+SSGKHYG+++C+GC FFKRS+ RN Y
Sbjct: 33 PQGGMSDPEQGDEERPG----IQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSY 88
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
TC++ D C ID+ HRNQC+ CRL KCF M K+
Sbjct: 89 TCRSNRD----CQIDQHHRNQCQYCRLKKCFRVGMRKE 122
>gi|387541468|gb|AFJ71361.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 404
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|363730987|ref|XP_425924.3| PREDICTED: hepatocyte nuclear factor 4-gamma [Gallus gallus]
Length = 512
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RSI +N VYTC+ C +DK RNQCR C
Sbjct: 117 CAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYTCR----FSRQCVVDKDKRNQCRYC 172
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 173 RLKKCFRAGMKKE 185
>gi|20070199|ref|NP_005225.2| nuclear receptor subfamily 2 group F member 6 [Homo sapiens]
gi|23503053|sp|P10588.2|NR2F6_HUMAN RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=V-erbA-related protein 2; Short=EAR-2
gi|119604986|gb|EAW84580.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127798390|gb|AAH02669.3| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799092|gb|AAH63018.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799948|gb|AAH84544.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|189054615|dbj|BAG37465.1| unnamed protein product [Homo sapiens]
gi|208966888|dbj|BAG73458.1| nuclear receptor subfamily 2, group F, member 6 [synthetic
construct]
gi|325495513|gb|ADZ17362.1| nuclear receptor V-erbA-related [Homo sapiens]
Length = 404
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|73986038|ref|XP_852412.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 isoform 1
[Canis lupus familiaris]
Length = 416
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 57 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 112
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 113 CQYCRLKKCFRVGMRKE 129
>gi|345491163|ref|XP_001607668.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Nasonia
vitripennis]
Length = 343
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/75 (62%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
+ +PCKVCGDRS GKHYG+Y CDGCS FFKRSI R +YTC A G C IDK RN
Sbjct: 7 IPVPCKVCGDRSYGKHYGVYCCDGCSCFFKRSIRRGVLYTCIAG---NGSCVIDKARRNW 63
Query: 97 CRACRLNKCFMSAMN 111
C CRL KCF +MN
Sbjct: 64 CPHCRLKKCFAVSMN 78
>gi|348515163|ref|XP_003445109.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 407
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/92 (48%), Positives = 59/92 (64%), Gaps = 4/92 (4%)
Query: 22 RPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQG 81
R DV D+ + C VCGD+SSGKHYG+++C+GC FFKRSI RN Y+C++
Sbjct: 35 RAGSSDVDVGDEDKACVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYSCRSNR 94
Query: 82 DLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+ C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 E----CQIDQHHRNQCQYCRLKKCFRVGMRKE 122
>gi|328707384|ref|XP_001948870.2| PREDICTED: photoreceptor-specific nuclear receptor-like
[Acyrthosiphon pisum]
Length = 510
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 59/84 (70%), Gaps = 3/84 (3%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+ ++ + L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +
Sbjct: 94 AVAKTKTLGLTCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGSCVV 150
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK HRNQC+ACRL KC MNKD
Sbjct: 151 DKAHRNQCQACRLKKCLNMGMNKD 174
>gi|74145119|dbj|BAE27426.1| unnamed protein product [Mus musculus]
Length = 390
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>gi|195027481|ref|XP_001986611.1| GH20426 [Drosophila grimshawi]
gi|193902611|gb|EDW01478.1| GH20426 [Drosophila grimshawi]
Length = 207
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 56/77 (72%), Gaps = 3/77 (3%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 95 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQ 151
Query: 97 CRACRLNKCFMSAMNKD 113
C+ACRL KC + MNKD
Sbjct: 152 CQACRLKKCLLMGMNKD 168
>gi|112807199|ref|NP_034280.2| nuclear receptor subfamily 2 group F member 6 [Mus musculus]
gi|341941192|sp|P43136.2|NR2F6_MOUSE RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUP transcription factor 3;
Short=COUP-TF3; AltName: Full=V-erbA-related protein 2;
Short=EAR-2
gi|14198162|gb|AAH08138.1| Nuclear receptor subfamily 2, group F, member 6 [Mus musculus]
gi|74143003|dbj|BAE42523.1| unnamed protein product [Mus musculus]
gi|74203464|dbj|BAE20887.1| unnamed protein product [Mus musculus]
gi|148696964|gb|EDL28911.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b [Mus
musculus]
Length = 390
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>gi|296233223|ref|XP_002761927.1| PREDICTED: nuclear receptor subfamily 2 group F member 6
[Callithrix jacchus]
Length = 386
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 51/108 (47%), Positives = 65/108 (60%), Gaps = 7/108 (6%)
Query: 9 RQIPPRYPQYFMSRPDGR--DVTSASRDR-LLDIPCKVCGDRSSGKHYGIYSCDGCSGFF 65
R PR + + P G D +R L + C VCGD+SSGKHYG+++C+GC FF
Sbjct: 3 RAATPRADEDDSASPPGSASDAEPGDEERPRLQVDCVVCGDKSSGKHYGVFTCEGCKSFF 62
Query: 66 KRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
KRSI RN YTC++ D C ID+ HRNQC+ CRL KCF M K+
Sbjct: 63 KRSIRRNLSYTCRSNRD----CQIDQHHRNQCQYCRLKKCFRVGMRKE 106
>gi|390357069|ref|XP_003728922.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 585
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 57/80 (71%), Gaps = 4/80 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+R LDIPC+VCGDRSSG+HYG+YSCDGC GFFKRS+ RN Y C+ G C ++
Sbjct: 189 ERGLDIPCQVCGDRSSGRHYGVYSCDGCRGFFKRSVRRNLAYVCRD----GGRCIVNVPR 244
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQC+ACR KC MN+D
Sbjct: 245 RNQCQACRYRKCLAVNMNRD 264
>gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio rerio]
Length = 428
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query: 10 QIPPRYPQYFMSRPDGRDVTSAS-RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRS 68
Q PP S P + S S + + I C VCGD+SSGKHYG ++C+GC FFKRS
Sbjct: 55 QGPPNNNNNTQSTPTNQTTQSQSEKQQPQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRS 114
Query: 69 IHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+ RN YTC+A + CPID+ HRNQC+ CRL KC M ++
Sbjct: 115 VRRNLTYTCRANRN----CPIDQHHRNQCQYCRLKKCLKVGMRRE 155
>gi|281353714|gb|EFB29298.1| hypothetical protein PANDA_011329 [Ailuropoda melanoleuca]
Length = 391
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 5/75 (6%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKR++ R C+ G CP+DK HRNQC+
Sbjct: 20 LQCRVCGDSSSGKHYGIYACNGCSGFFKRTVRRR--LRCQVGA---GMCPVDKAHRNQCQ 74
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC MN+D
Sbjct: 75 ACRLKKCLQEGMNQD 89
>gi|20806167|ref|NP_620813.1| nuclear receptor subfamily 2 group F member 6 [Rattus norvegicus]
gi|10720384|sp|O09017.1|NR2F6_RAT RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUPg; AltName: Full=Ovalbumin upstream
promoter gamma nuclear receptor; AltName:
Full=V-erbA-related protein 2; Short=EAR-2
gi|2197123|gb|AAB61296.1| ovalbumin upstream promoter gamma nuclear receptor rCOUPg [Rattus
norvegicus]
Length = 390
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKR+I RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRTIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>gi|431921971|gb|ELK19144.1| Nuclear receptor subfamily 2 group F member 6 [Pteropus alecto]
Length = 481
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 54 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 109
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 110 CQYCRLKKCFRVGMRKE 126
>gi|426228806|ref|XP_004008487.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6, partial [Ovis aries]
Length = 382
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 16 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 71
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 72 CQYCRLKKCFRVGMRKE 88
>gi|31065|emb|CAA31282.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKR+I RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRTIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query: 10 QIPPRYPQYFMSRPDGRDVTSAS-RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRS 68
Q PP S P + S S + + I C VCGD+SSGKHYG ++C+GC FFKRS
Sbjct: 55 QGPPNNNNNTQSTPTNQTTQSQSEKQQPQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRS 114
Query: 69 IHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+ RN YTC+A + CPID+ HRNQC+ CRL KC M ++
Sbjct: 115 VRRNLTYTCRANRN----CPIDQHHRNQCQYCRLKKCLKVGMRRE 155
>gi|156359518|ref|XP_001624815.1| predicted protein [Nematostella vectensis]
gi|156211616|gb|EDO32715.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 53/73 (72%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C+VCGDRSSGKHYG+++CDGC GFFKRSI RN Y CK G C +D RNQC+AC
Sbjct: 1 CRVCGDRSSGKHYGVFTCDGCRGFFKRSIRRNLTYHCKE----LGKCVVDVARRNQCQAC 56
Query: 101 RLNKCFMSAMNKD 113
RL KCF MNKD
Sbjct: 57 RLKKCFEVQMNKD 69
>gi|216409732|dbj|BAH02303.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
Length = 401
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKR+I RN YTC++ D C ID+ HRNQ
Sbjct: 50 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRTIRRNLSYTCRSNRD----CQIDQHHRNQ 105
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 106 CQYCRLKKCFRVGMRKE 122
>gi|390331720|ref|XP_780706.3| PREDICTED: photoreceptor-specific nuclear receptor-like
[Strongylocentrotus purpuratus]
Length = 443
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C VCGD SSGKHYGIY+C+GCSGFFKRS+ R VY C+A G C +DK HRNQC+
Sbjct: 32 LTCTVCGDISSGKHYGIYACNGCSGFFKRSVRRKLVYRCQAG---TGCCLVDKAHRNQCQ 88
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MNKD
Sbjct: 89 ACRLKKCLDAGMNKD 103
>gi|383864113|ref|XP_003707524.1| PREDICTED: transcription factor HNF-4 homolog [Megachile rotundata]
Length = 539
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 121 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCR----FSRNCVVDKDKRNQCRYC 176
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 177 RLRKCFKAGMKKE 189
>gi|482930|emb|CAA54097.1| EAR2 [Mus musculus]
Length = 390
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKR+I RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRTIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>gi|291241519|ref|XP_002740657.1| PREDICTED: Orphan nuclear receptor NR6A1, putative-like
[Saccoglossus kowalevskii]
Length = 404
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 55/75 (73%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+PC+VCGD+S GKHYG+Y CDGCS FFKRSI RN VYTC KG+C IDK RN C
Sbjct: 9 VPCQVCGDKSYGKHYGVYCCDGCSCFFKRSIRRNMVYTCIG----KGNCTIDKARRNWCP 64
Query: 99 ACRLNKCFMSAMNKD 113
CRLNKCF +MN+
Sbjct: 65 YCRLNKCFAVSMNRS 79
>gi|391330852|ref|XP_003739866.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Metaseiulus occidentalis]
Length = 467
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C IDK HRNQC+
Sbjct: 56 LTCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVIDKAHRNQCQ 112
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC MNKD
Sbjct: 113 ACRLKKCLQMGMNKD 127
>gi|409758|gb|AAA37532.1| transcription factor [Mus musculus]
Length = 389
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKR+I RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRTIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>gi|397494017|ref|XP_003817891.1| PREDICTED: nuclear receptor subfamily 2 group F member 6, partial
[Pan paniscus]
Length = 429
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 22 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 77
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 78 CQYCRLKKCFRVGMRKE 94
>gi|195155258|ref|XP_002018522.1| GL17752 [Drosophila persimilis]
gi|194114318|gb|EDW36361.1| GL17752 [Drosophila persimilis]
Length = 333
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 62/97 (63%), Gaps = 12/97 (12%)
Query: 17 QYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYT 76
Q MSR G++ L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y
Sbjct: 141 QSTMSRIKGQN---------LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYR 191
Query: 77 CKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C+A G C +DK HRNQC+ACRL KC MNKD
Sbjct: 192 CQAG---TGRCIVDKAHRNQCQACRLKKCLQMGMNKD 225
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 390 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 445
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 446 CQYCRLKKCFRVGMRKE 462
>gi|453232782|ref|NP_001263953.1| Protein FAX-1, isoform b [Caenorhabditis elegans]
gi|403411176|emb|CCM09421.1| Protein FAX-1, isoform b [Caenorhabditis elegans]
Length = 390
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G+C +DK HRNQC+AC
Sbjct: 102 CAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGNCVVDKAHRNQCQAC 158
Query: 101 RLNKCFMSAMNKD 113
RL KC MNKD
Sbjct: 159 RLKKCLNKGMNKD 171
>gi|170586218|ref|XP_001897876.1| photoreceptor-specific nuclear receptor [Brugia malayi]
gi|158594271|gb|EDP32855.1| photoreceptor-specific nuclear receptor, putative [Brugia malayi]
Length = 486
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQC+
Sbjct: 153 LSCAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGSCIVDKAHRNQCQ 209
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC MNKD
Sbjct: 210 ACRLKKCLSKGMNKD 224
>gi|195426545|ref|XP_002061388.1| GK20892 [Drosophila willistoni]
gi|194157473|gb|EDW72374.1| GK20892 [Drosophila willistoni]
Length = 573
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 97 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQ 153
Query: 97 CRACRLNKCFMSAMNKD 113
C+ACRL KC MNKD
Sbjct: 154 CQACRLKKCLQMGMNKD 170
>gi|312371094|gb|EFR19357.1| hypothetical protein AND_22643 [Anopheles darlingi]
Length = 486
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGDR+SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 9 CKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----GGKCVVDVSRRNQCQAC 64
Query: 101 RLNKCFMSAMNKD 113
R KC + M ++
Sbjct: 65 RFAKCLQANMRRE 77
>gi|327287252|ref|XP_003228343.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Anolis
carolinensis]
Length = 459
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C IDK RNQCR C
Sbjct: 59 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHIYSCR----FSRQCVIDKDKRNQCRYC 114
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 115 RLKKCFRAGMKKE 127
>gi|17568335|ref|NP_508547.1| Protein FAX-1, isoform a [Caenorhabditis elegans]
gi|5881165|gb|AAD55066.1|AF176087_1 nuclear hormone receptor FAX-1 [Caenorhabditis elegans]
gi|351057992|emb|CCD64596.1| Protein FAX-1, isoform a [Caenorhabditis elegans]
Length = 419
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G+C +DK HRNQC+AC
Sbjct: 102 CAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGNCVVDKAHRNQCQAC 158
Query: 101 RLNKCFMSAMNKD 113
RL KC MNKD
Sbjct: 159 RLKKCLNKGMNKD 171
>gi|7504432|pir||T29238 hypothetical protein F56E3.4 - Caenorhabditis elegans
Length = 351
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G+C +DK HRNQC+AC
Sbjct: 63 CAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGNCVVDKAHRNQCQAC 119
Query: 101 RLNKCFMSAMNKD 113
RL KC MNKD
Sbjct: 120 RLKKCLNKGMNKD 132
>gi|158302179|ref|XP_321796.4| AGAP001348-PA [Anopheles gambiae str. PEST]
gi|157012826|gb|EAA01088.4| AGAP001348-PA [Anopheles gambiae str. PEST]
Length = 430
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGDR+SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 25 CKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----GGKCVVDVSRRNQCQAC 80
Query: 101 RLNKCFMSAMNKD 113
R KC + M ++
Sbjct: 81 RFAKCLQANMRRE 93
>gi|348505807|ref|XP_003440452.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oreochromis
niloticus]
Length = 423
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 48/111 (43%), Positives = 63/111 (56%), Gaps = 11/111 (9%)
Query: 10 QIPPRYPQYFMSRPDGR-------DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCS 62
Q+ P PQ + P + S + I C VCGD+SSGKHYG ++C+GC
Sbjct: 44 QVAPPTPQTPVQGPPNNTQSTPTNQTSQQSEKQPQHIECVVCGDKSSGKHYGQFTCEGCK 103
Query: 63 GFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
FFKRS+ RN YTC+A + CPID+ HRNQC+ CRL KC M ++
Sbjct: 104 SFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQYCRLKKCLKVGMRRE 150
>gi|195583620|ref|XP_002081615.1| GD11109 [Drosophila simulans]
gi|194193624|gb|EDX07200.1| GD11109 [Drosophila simulans]
Length = 414
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 107 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHRNQ 163
Query: 97 CRACRLNKCFMSAMNKD 113
C+ACRL KC MNKD
Sbjct: 164 CQACRLKKCLQMGMNKD 180
>gi|195402633|ref|XP_002059909.1| GJ14974 [Drosophila virilis]
gi|194140775|gb|EDW57246.1| GJ14974 [Drosophila virilis]
Length = 577
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 95 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQ 151
Query: 97 CRACRLNKCFMSAMNKD 113
C+ACRL KC MNKD
Sbjct: 152 CQACRLKKCLQMGMNKD 168
>gi|156376474|ref|XP_001630385.1| predicted protein [Nematostella vectensis]
gi|156217405|gb|EDO38322.1| predicted protein [Nematostella vectensis]
Length = 340
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
D+ +I CKVCGD SSG+HYG+Y+CDGCSGFF RS+ R+ VYTCK G C +DK
Sbjct: 2 DKKQEILCKVCGDISSGRHYGVYTCDGCSGFFMRSVRRDMVYTCKG----NGGCTVDKKR 57
Query: 94 RNQCRACRLNKCFMSAMNK 112
RNQC+ACR KC MN+
Sbjct: 58 RNQCQACRFKKCLEVKMNR 76
>gi|431896654|gb|ELK06066.1| Nuclear receptor ROR-gamma [Pteropus alecto]
Length = 771
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/99 (45%), Positives = 64/99 (64%), Gaps = 4/99 (4%)
Query: 15 YPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRV 74
Y + + D + V + S ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS H N
Sbjct: 215 YMRCIIQSRDQQTVYAKSSAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQHCNVA 274
Query: 75 YTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
Y+C Q + CPID+T RN+C+ CRL KC M++D
Sbjct: 275 YSCTRQRN----CPIDRTSRNRCQHCRLQKCLALGMSRD 309
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/111 (43%), Positives = 63/111 (56%), Gaps = 11/111 (9%)
Query: 10 QIPPRYPQYFMSRPDGR-------DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCS 62
Q+ P PQ + P + S + I C VCGD+SSGKHYG ++C+GC
Sbjct: 44 QVAPPTPQTPVQGPPNNTQSTPTNQTSQQSEKQPQHIECVVCGDKSSGKHYGQFTCEGCK 103
Query: 63 GFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
FFKRS+ RN YTC+A + CPID+ HRNQC+ CRL KC M ++
Sbjct: 104 SFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQYCRLKKCLKVGMRRE 150
>gi|332253632|ref|XP_003275940.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nomascus
leucogenys]
Length = 366
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|308511839|ref|XP_003118102.1| CRE-FAX-1 protein [Caenorhabditis remanei]
gi|308238748|gb|EFO82700.1| CRE-FAX-1 protein [Caenorhabditis remanei]
Length = 470
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G+C +DK HRNQC+AC
Sbjct: 102 CAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGNCIVDKAHRNQCQAC 158
Query: 101 RLNKCFMSAMNKD 113
RL KC MNKD
Sbjct: 159 RLKKCLNKGMNKD 171
>gi|348513001|ref|XP_003444031.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oreochromis niloticus]
Length = 610
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRSI +N VYTC+ G+ C I+K HRN+C+ C
Sbjct: 120 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGE----CAINKLHRNRCQYC 175
Query: 101 RLNKCFMSAMNKD 113
RL +C M +D
Sbjct: 176 RLQRCIALGMKQD 188
>gi|91092158|ref|XP_967537.1| PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor
[Tribolium castaneum]
gi|270015100|gb|EFA11548.1| seven up [Tribolium castaneum]
Length = 419
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 29 TSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
++ S D+ +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CP
Sbjct: 69 SATSADKNQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CP 124
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
ID+ HRNQC+ CRL KC M ++
Sbjct: 125 IDQHHRNQCQYCRLKKCMKMGMRRE 149
>gi|189238719|ref|XP_970391.2| PREDICTED: similar to Hormone receptor 51 CG16801-PA [Tribolium
castaneum]
Length = 393
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQC+AC
Sbjct: 92 CVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQCQAC 148
Query: 101 RLNKCFMSAMNKD 113
RL KC MNKD
Sbjct: 149 RLKKCLAMGMNKD 161
>gi|327271760|ref|XP_003220655.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Anolis
carolinensis]
Length = 465
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FNRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear hormone receptor [Callosobruchus maculatus]
Length = 419
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 29 TSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
++ S D+ +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CP
Sbjct: 69 SANSNDKNQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSTN----CP 124
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
ID+ HRNQC+ CRL KC M ++
Sbjct: 125 IDQHHRNQCQYCRLKKCMKMGMRRE 149
>gi|198459164|ref|XP_002138650.1| GA24899 [Drosophila pseudoobscura pseudoobscura]
gi|198136599|gb|EDY69208.1| GA24899 [Drosophila pseudoobscura pseudoobscura]
Length = 190
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 9 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQ 65
Query: 97 CRACRLNKCFMSAMNKD 113
C+ACRL KC MNKD
Sbjct: 66 CQACRLKKCLQMGMNKD 82
>gi|410907275|ref|XP_003967117.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Takifugu rubripes]
Length = 423
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 63/104 (60%), Gaps = 8/104 (7%)
Query: 10 QIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSI 69
Q PP Q S P + + S + I C VCGD+SSGKHYG ++C+GC FFKRS+
Sbjct: 55 QGPPNNTQ---STPTNQ-TSQQSEKQPQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSV 110
Query: 70 HRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
RN YTC+A + CPID+ HRNQC+ CRL KC M ++
Sbjct: 111 RRNLTYTCRANRN----CPIDQHHRNQCQYCRLKKCLKVGMRRE 150
>gi|189237797|ref|XP_973111.2| PREDICTED: similar to PNR-like [Tribolium castaneum]
Length = 426
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C+VCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D T RNQC+AC
Sbjct: 17 CRVCGDKASGKHYGVSSCDGCRGFFKRSIRRNLEYVCKEN----GRCIVDVTRRNQCQAC 72
Query: 101 RLNKCFMSAMNKD 113
R KC M +D
Sbjct: 73 RFKKCLQVNMKRD 85
>gi|291222082|ref|XP_002731047.1| PREDICTED: hepatocyte nuclear factor 4, alpha-like [Saccoglossus
kowalevskii]
Length = 454
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C +DK RNQCR C
Sbjct: 10 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FSRTCVVDKDKRNQCRYC 65
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 66 RLKKCFRAGMKKE 78
>gi|410908455|ref|XP_003967706.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Takifugu rubripes]
Length = 601
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRSI +N VYTC+ G+ C I+K HRN+C+ C
Sbjct: 114 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGE----CAINKLHRNRCQYC 169
Query: 101 RLNKCFMSAMNKD 113
RL +C M +D
Sbjct: 170 RLQRCIALGMKQD 182
>gi|341874211|gb|EGT30146.1| CBN-FAX-1 protein [Caenorhabditis brenneri]
Length = 396
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G+C +DK HRNQC+AC
Sbjct: 102 CAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGNCVVDKAHRNQCQAC 158
Query: 101 RLNKCFMSAMNKD 113
RL KC MNKD
Sbjct: 159 RLKKCLNKGMNKD 171
>gi|16797884|gb|AAL29200.1|AF323687_1 nuclear receptor AmNR7 [Acropora millepora]
Length = 368
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 28 VECAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRASRN----CPIDQHHRNQCQ 83
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 84 YCRLRKCMKVGMRRE 98
>gi|405974187|gb|EKC38851.1| Photoreceptor-specific nuclear receptor [Crassostrea gigas]
Length = 438
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQC+
Sbjct: 73 LTCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGMCLVDKAHRNQCQ 129
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC MNKD
Sbjct: 130 ACRLKKCLQMGMNKD 144
>gi|432861727|ref|XP_004069708.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oryzias
latipes]
Length = 423
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 80 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 135
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 136 YCRLKKCLKVGMRRE 150
>gi|268578711|ref|XP_002644338.1| C. briggsae CBR-FAX-1 protein [Caenorhabditis briggsae]
Length = 418
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G+C +DK HRNQC+AC
Sbjct: 102 CAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGNCVVDKAHRNQCQAC 158
Query: 101 RLNKCFMSAMNKD 113
RL KC MNKD
Sbjct: 159 RLKKCLNKGMNKD 171
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 63/104 (60%), Gaps = 8/104 (7%)
Query: 10 QIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSI 69
Q PP Q S P + + S + I C VCGD+SSGKHYG ++C+GC FFKRS+
Sbjct: 55 QGPPNNTQ---STPTNQ-TSQQSEKQPQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSV 110
Query: 70 HRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
RN YTC+A + CPID+ HRNQC+ CRL KC M ++
Sbjct: 111 RRNLTYTCRANRN----CPIDQHHRNQCQYCRLKKCLKVGMRRE 150
>gi|327271762|ref|XP_003220656.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Anolis
carolinensis]
Length = 475
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FNRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|326931833|ref|XP_003212028.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Meleagris
gallopavo]
Length = 455
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FNRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|71894981|ref|NP_001026026.1| hepatocyte nuclear factor 4-alpha [Gallus gallus]
gi|57116106|gb|AAW33562.1| hepatic nuclear factor 4alpha [Gallus gallus]
Length = 454
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FNRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|347968055|ref|XP_003436151.1| AGAP002544-PB [Anopheles gambiae str. PEST]
gi|333468185|gb|EGK96862.1| AGAP002544-PB [Anopheles gambiae str. PEST]
Length = 717
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 10/94 (10%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
M+ +G+D+ + +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+
Sbjct: 160 MNSQNGQDLKNQ------NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRG 213
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+ CPID+ HRNQC+ CRL KC M ++
Sbjct: 214 NRN----CPIDQHHRNQCQFCRLRKCLKMGMRRE 243
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CP+D+ HRNQC+
Sbjct: 95 IECIVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPVDQHHRNQCQ 150
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 151 YCRLKKCLKVGMRRE 165
>gi|432861725|ref|XP_004069707.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oryzias
latipes]
Length = 417
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 80 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 135
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 136 YCRLKKCLKVGMRRE 150
>gi|307196327|gb|EFN77940.1| Transcription factor HNF-4-like protein [Harpegnathos saltator]
Length = 468
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 56 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FNRNCVVDKDKRNQCRYC 111
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 112 RLRKCFKAGMKKE 124
>gi|348500378|ref|XP_003437750.1| PREDICTED: COUP transcription factor 2-like [Oreochromis niloticus]
Length = 410
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S + + I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPI
Sbjct: 65 SMDKQQSQQIECIVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPI 120
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
D+ HRNQC+ CRL KC M ++
Sbjct: 121 DQHHRNQCQYCRLKKCLKVGMRRE 144
>gi|126302915|ref|XP_001369784.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Monodelphis
domestica]
Length = 464
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
++ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC
Sbjct: 69 NVECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQC 124
Query: 98 RACRLNKCFMSAMNKD 113
+ CRL KC M ++
Sbjct: 125 QYCRLKKCLKVGMRRE 140
>gi|66472508|ref|NP_001018458.1| nuclear receptor subfamily 2 group C member 1 [Danio rerio]
gi|63102167|gb|AAH95365.1| Nuclear receptor subfamily 2, group C, member 1 [Danio rerio]
Length = 600
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRSI +N VYTC+ G+ C I+K HRN+C+ C
Sbjct: 113 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGE----CVINKHHRNRCQYC 168
Query: 101 RLNKCFMSAMNKD 113
RL +C M +D
Sbjct: 169 RLQRCMALGMKQD 181
>gi|195443622|ref|XP_002069499.1| GK11542 [Drosophila willistoni]
gi|194165584|gb|EDW80485.1| GK11542 [Drosophila willistoni]
Length = 835
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 191 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 246
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQC+ CRL KC M ++
Sbjct: 247 RNQCQYCRLKKCLKMGMRRE 266
>gi|392898442|ref|NP_500190.3| Protein NHR-236 [Caenorhabditis elegans]
gi|351059122|emb|CCD66972.1| Protein NHR-236 [Caenorhabditis elegans]
Length = 283
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 53/72 (73%), Gaps = 4/72 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C+VCGDR+SG+HYG+ SCDGC GFFKRSI RN Y+CK GD C ID T RNQC+AC
Sbjct: 13 CRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYSCKESGD----CVIDVTRRNQCQAC 68
Query: 101 RLNKCFMSAMNK 112
R KC AMN+
Sbjct: 69 RFQKCITVAMNR 80
>gi|260809813|ref|XP_002599699.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
gi|229284980|gb|EEN55711.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
Length = 632
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 12 PPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHR 71
P P M P+ T S D C VCGD++SG+HYG SC+GC GFFKRSI +
Sbjct: 118 PIGTPTAVMMSPNSVLFTPGSGDTKPQELCVVCGDKASGRHYGAISCEGCKGFFKRSIRK 177
Query: 72 NRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
N Y C++ + CPI+K HRN+C+ CRL KC M +
Sbjct: 178 NLGYVCRSSKE----CPINKHHRNRCQYCRLQKCLSVGMRSE 215
>gi|68132040|gb|AAY85286.1| TR2, partial [Danio rerio]
Length = 580
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRSI +N VYTC+ G+ C I+K HRN+C+ C
Sbjct: 98 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGE----CVINKHHRNRCQYC 153
Query: 101 RLNKCFMSAMNKD 113
RL +C M +D
Sbjct: 154 RLQRCMALGMKQD 166
>gi|307196423|gb|EFN78012.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 394
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 11 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCIVDVSRRNQCQAC 66
Query: 101 RLNKCFMSAMNKD 113
R KC M +D
Sbjct: 67 RFTKCLQVNMKRD 79
>gi|313240854|emb|CBY33143.1| unnamed protein product [Oikopleura dioica]
Length = 619
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCKVCGDRSSG HYGI +C+GC GFF+RS N Y C G C +D+T+RN+C+
Sbjct: 40 IPCKVCGDRSSGIHYGIITCEGCKGFFRRSQQNNARYNCPRSGT----CVVDRTNRNRCQ 95
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC M++D
Sbjct: 96 ACRLKKCLGLGMSRD 110
>gi|126302917|ref|XP_001369818.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Monodelphis
domestica]
Length = 474
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|16797886|gb|AAL29201.1|AF323688_1 nuclear receptor AmNR8 [Acropora millepora]
Length = 379
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR +GKHYGI +C+GC GFFKRS+ +N Y C+ G CP+DK HRN+C+ C
Sbjct: 1 CLVCGDRGTGKHYGIVACEGCKGFFKRSVRKNLHYRCQGN----GACPVDKVHRNRCQRC 56
Query: 101 RLNKCFMSAMNKD 113
RLNKC M K+
Sbjct: 57 RLNKCLTMGMKKE 69
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 154 STSPGPLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 209
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 210 DKRQRNRCQYCRYQKCLVMGMKRE 233
>gi|432861275|ref|XP_004069587.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oryzias latipes]
Length = 610
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRSI +N +YTC+ G+ C I+K HRN+C+ C
Sbjct: 120 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLMYTCRGSGE----CAINKLHRNRCQYC 175
Query: 101 RLNKCFMSAMNKD 113
RL +C M +D
Sbjct: 176 RLQRCIALGMKQD 188
>gi|59709838|gb|AAW88549.1| TLL [Schistosoma mansoni]
Length = 76
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 55/76 (72%), Gaps = 6/76 (7%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH------CPIDKTHR 94
C VC D SSGKHYGIY+CDGC+GFFKRSI RNR YTCK++G G C +DK+HR
Sbjct: 1 CHVCEDHSSGKHYGIYACDGCAGFFKRSIRRNRQYTCKSRGTTIGSKSGIVVCRVDKSHR 60
Query: 95 NQCRACRLNKCFMSAM 110
NQCRACRL KC M
Sbjct: 61 NQCRACRLTKCLEVGM 76
>gi|47224450|emb|CAG08700.1| unnamed protein product [Tetraodon nigroviridis]
Length = 597
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 8/90 (8%)
Query: 28 VTSASRDRLLDIP----CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 83
VT AS L P C VCGD++SG+HYG SC+GC GFFKRSI +N VYTC+ G+
Sbjct: 97 VTDASDQSGLVKPIVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGE- 155
Query: 84 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C I+K HRN+C+ CRL +C M ++
Sbjct: 156 ---CAINKLHRNRCQYCRLQRCIALGMKQE 182
>gi|313233664|emb|CBY09835.1| unnamed protein product [Oikopleura dioica]
Length = 490
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 57/91 (62%), Gaps = 7/91 (7%)
Query: 23 PDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD 82
P G +++ + I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+
Sbjct: 94 PGGNSTSTSDKSH---IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLNYTCRGNRS 150
Query: 83 LKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
CPID+ HRNQC+ CRL KC M ++
Sbjct: 151 ----CPIDQHHRNQCQYCRLKKCLKVGMRRE 177
>gi|194741798|ref|XP_001953374.1| GF17240 [Drosophila ananassae]
gi|190626433|gb|EDV41957.1| GF17240 [Drosophila ananassae]
Length = 826
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 198 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 253
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQC+ CRL KC M ++
Sbjct: 254 RNQCQYCRLKKCLKMGMRRE 273
>gi|410049651|ref|XP_003952785.1| PREDICTED: COUP transcription factor 2 [Pan troglodytes]
Length = 421
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|332025246|gb|EGI65420.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 393
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 11 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCIVDVSRRNQCQAC 66
Query: 101 RLNKCFMSAMNKD 113
R KC M +D
Sbjct: 67 RFTKCLQVNMKRD 79
>gi|410904505|ref|XP_003965732.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Takifugu rubripes]
Length = 404
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 8 CRQIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKR 67
C Q P P G D S D++ ++ C VCGDRSSGKHYG ++C+GC FFKR
Sbjct: 23 CGQEPGGAPGTPNGSTSGNDALSG--DKIPNVDCMVCGDRSSGKHYGQFTCEGCKSFFKR 80
Query: 68 SIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
S+ RN YTC+ D CPID+ HRNQC+ CRL KC M ++
Sbjct: 81 SVRRNLTYTCRGNRD----CPIDQHHRNQCQYCRLKKCLKVGMRRE 122
>gi|383858852|ref|XP_003704913.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Megachile rotundata]
Length = 392
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 11 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCIVDVSRRNQCQAC 66
Query: 101 RLNKCFMSAMNKD 113
R KC M +D
Sbjct: 67 RFTKCLQVNMKRD 79
>gi|340722756|ref|XP_003399768.1| PREDICTED: COUP transcription factor 1-like [Bombus terrestris]
Length = 392
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 11 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCIVDVSRRNQCQAC 66
Query: 101 RLNKCFMSAMNKD 113
R KC M +D
Sbjct: 67 RFTKCLQVNMKRD 79
>gi|307189123|gb|EFN73579.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 380
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 12 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCIVDVSRRNQCQAC 67
Query: 101 RLNKCFMSAMNKD 113
R KC M +D
Sbjct: 68 RFTKCLQVNMKRD 80
>gi|221124181|ref|XP_002154441.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Hydra
magnipapillata]
Length = 438
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 57/75 (76%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+PC+VCGD+SSG+HYG+++CDGC GFFKR++ RN ++ CK G+ C +D RNQC+
Sbjct: 22 LPCRVCGDKSSGRHYGVFTCDGCRGFFKRAVRRNLLFLCKENGN----CQVDVARRNQCQ 77
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC+ MN+D
Sbjct: 78 ACRLRKCYDVHMNRD 92
>gi|16797876|gb|AAL29196.1|AF323683_1 nuclear receptor AmNR4 isoform A [Acropora millepora]
Length = 416
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SGKHYGI +C+GC GFFKRSI +N Y+C QG+ G CPI+K HRN+C+ C
Sbjct: 38 CLVCGDRASGKHYGIVACEGCKGFFKRSIRKNLHYSC--QGN--GACPINKVHRNRCQRC 93
Query: 101 RLNKCFMSAMNKD 113
RL KC M ++
Sbjct: 94 RLKKCLTMGMKRE 106
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 221 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 276
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 277 YCRLKKCLKVGMRRE 291
>gi|349970344|dbj|GAA35793.1| photoreceptor-specific nuclear receptor [Clonorchis sinensis]
Length = 756
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C IDK HRNQC+AC
Sbjct: 270 CSVCGDVSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGLCSIDKAHRNQCQAC 326
Query: 101 RLNKCFMSAMNKD 113
RL KC MNK+
Sbjct: 327 RLKKCLRMGMNKN 339
>gi|16797878|gb|AAL29197.1|AF323684_1 nuclear receptor AmNR4 isoform B [Acropora millepora]
Length = 408
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SGKHYGI +C+GC GFFKRSI +N Y+C QG+ G CPI+K HRN+C+ C
Sbjct: 30 CLVCGDRASGKHYGIVACEGCKGFFKRSIRKNLHYSC--QGN--GACPINKVHRNRCQRC 85
Query: 101 RLNKCFMSAMNKD 113
RL KC M ++
Sbjct: 86 RLKKCLTMGMKRE 98
>gi|444730607|gb|ELW70985.1| Retinoic acid receptor RXR-gamma [Tupaia chinensis]
Length = 425
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ VYTC+ D C I
Sbjct: 90 STSPGSLVKHVCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKD----CLI 145
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 146 DKRQRNRCQYCRYQKCLVMGMKRE 169
>gi|301773902|ref|XP_002922374.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Ailuropoda
melanoleuca]
Length = 483
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKR++ R C+ G CP+DK HRNQC+
Sbjct: 110 LQCRVCGDSSSGKHYGIYACNGCSGFFKRTVRRRLXXRCQVGA---GMCPVDKAHRNQCQ 166
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC MN+D
Sbjct: 167 ACRLKKCLQEGMNQD 181
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 116 STSPGALVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 171
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 172 DKRQRNRCQYCRYQKCLVMGMKRE 195
>gi|270008322|gb|EFA04770.1| hypothetical protein TcasGA2_TC030676 [Tribolium castaneum]
Length = 357
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C+VCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D T RNQC+AC
Sbjct: 14 CRVCGDKASGKHYGVSSCDGCRGFFKRSIRRNLEYVCKEN----GRCIVDVTRRNQCQAC 69
Query: 101 RLNKCFMSAMNKD 113
R KC M +D
Sbjct: 70 RFKKCLQVNMKRD 82
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 146 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 201
Query: 101 RLNKCFMSAMNKD 113
R KC + M ++
Sbjct: 202 RYQKCLVMGMKRE 214
>gi|443687228|gb|ELT90277.1| hypothetical protein CAPTEDRAFT_177303 [Capitella teleta]
Length = 352
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R + +PCKVCGD+S GKHYG+Y CDGCS FFKRSI + VY+C G KG C IDK
Sbjct: 7 RTLPVPVPCKVCGDKSFGKHYGVYCCDGCSCFFKRSIRKRMVYSCI--GQCKGDCIIDKA 64
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN C CRL KCF MNKD
Sbjct: 65 RRNWCPHCRLTKCFRVTMNKD 85
>gi|242020457|ref|XP_002430670.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515850|gb|EEB17932.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 344
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 44/80 (55%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
D L+ CKVCGD++SGKHYG+ SCDGC GFFKRSI R Y CK C +D T
Sbjct: 2 DHKLEALCKVCGDKASGKHYGVISCDGCRGFFKRSIRRGLAYHCKESNS----CIVDVTR 57
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQC+ACR KC M +D
Sbjct: 58 RNQCQACRFKKCLSVNMKRD 77
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|24646228|ref|NP_731681.1| seven up, isoform A [Drosophila melanogaster]
gi|62512142|sp|P16376.3|7UP2_DROME RecName: Full=Steroid receptor seven-up, isoform A; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoform A
gi|23171091|gb|AAN13541.1| seven up, isoform A [Drosophila melanogaster]
Length = 746
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 193 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 248
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQC+ CRL KC M ++
Sbjct: 249 RNQCQYCRLKKCLKMGMRRE 268
>gi|328787581|ref|XP_624042.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Apis
mellifera]
Length = 394
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 11 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCIVDVSRRNQCQAC 66
Query: 101 RLNKCFMSAMNKD 113
R KC M +D
Sbjct: 67 RFTKCLQVNMKRD 79
>gi|195396200|ref|XP_002056720.1| GJ11090 [Drosophila virilis]
gi|194143429|gb|EDW59832.1| GJ11090 [Drosophila virilis]
Length = 787
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 188 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 243
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQC+ CRL KC M ++
Sbjct: 244 RNQCQYCRLKKCLKMGMRRE 263
>gi|47215173|emb|CAG01439.1| unnamed protein product [Tetraodon nigroviridis]
Length = 350
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 55/75 (73%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS H N +Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQHNNAMYSCSRQRN----CLIDRTNRNRCQ 63
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 64 HCRLQKCLALGMSRD 78
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGALVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 112 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 167
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 168 DKRQRNRCQYCRYQKCLVMGMKRE 191
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 96 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 151
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 152 DKRQRNRCQYCRYQKCLVMGMKRE 175
>gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus]
Length = 414
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|410924582|ref|XP_003975760.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 404
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 25 GRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 84
G D+ + D+ + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC++ +
Sbjct: 37 GSDMEAGDEDKACVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRSNRE-- 94
Query: 85 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 --CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|118344390|ref|NP_001072021.1| nuclear receptor [Ciona intestinalis]
gi|70571079|dbj|BAE06675.1| nuclear receptor [Ciona intestinalis]
Length = 802
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 59/83 (71%), Gaps = 4/83 (4%)
Query: 31 ASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 90
++R ++ IPCKVCGD+SSG HYG+ +C+GC GFF+RS N Y+C G+ C ID
Sbjct: 155 SARAQIEIIPCKVCGDKSSGIHYGVITCEGCKGFFRRSQQNNYAYSCPRHGN----CIID 210
Query: 91 KTHRNQCRACRLNKCFMSAMNKD 113
+++RN+C+ CRL KC + M+KD
Sbjct: 211 RSNRNRCQHCRLQKCLRAGMSKD 233
>gi|47216397|emb|CAG01948.1| unnamed protein product [Tetraodon nigroviridis]
Length = 426
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 25 GRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 84
G D+ + D+ + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC++ +
Sbjct: 37 GSDMEAGDEDKACVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRSNRE-- 94
Query: 85 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 --CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|350424111|ref|XP_003493692.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 392
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 11 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCIVDVSRRNQCQAC 66
Query: 101 RLNKCFMSAMNKD 113
R KC M +D
Sbjct: 67 RFTKCLQVNMKRD 79
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|298228993|ref|NP_001177181.1| COUP transcription factor 2 isoform 1 [Sus scrofa]
gi|344284391|ref|XP_003413951.1| PREDICTED: COUP transcription factor 2 isoform 1 [Loxodonta
africana]
gi|345798235|ref|XP_849497.2| PREDICTED: COUP transcription factor 2 isoform 2 [Canis lupus
familiaris]
gi|348579089|ref|XP_003475314.1| PREDICTED: COUP transcription factor 2 [Cavia porcellus]
Length = 414
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|195111960|ref|XP_002000544.1| GI10282 [Drosophila mojavensis]
gi|193917138|gb|EDW16005.1| GI10282 [Drosophila mojavensis]
Length = 812
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 189 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 244
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQC+ CRL KC M ++
Sbjct: 245 RNQCQYCRLKKCLKMGMRRE 264
>gi|18158445|ref|NP_542956.1| COUP transcription factor 2 [Rattus norvegicus]
gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=COUPb; AltName:
Full=Nuclear receptor subfamily 2 group F member 2;
AltName: Full=Ovalbumin upstream promoter beta nuclear
receptor
gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter beta nuclear receptor rCOUPb [Rattus
norvegicus]
gi|149057164|gb|EDM08487.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 414
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|195398447|ref|XP_002057833.1| GJ17882 [Drosophila virilis]
gi|194141487|gb|EDW57906.1| GJ17882 [Drosophila virilis]
Length = 679
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 142 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FSRNCVVDKDKRNQCRYC 197
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 198 RLRKCFKAGMKKE 210
>gi|27806025|ref|NP_776827.1| COUP transcription factor 2 [Bos taurus]
gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor [Bos taurus]
gi|115305372|gb|AAI23678.1| Nuclear receptor subfamily 2, group F, member 2 [Bos taurus]
gi|296475581|tpg|DAA17696.1| TPA: COUP transcription factor 2 [Bos taurus]
Length = 414
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|405977938|gb|EKC42362.1| Nuclear receptor subfamily 2 group F member 1-A [Crassostrea gigas]
Length = 435
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+ CPID+ HRNQC+
Sbjct: 81 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGS----RQCPIDQHHRNQCQ 136
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 137 YCRLKKCLKMGMRRE 151
>gi|395747169|ref|XP_003778564.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2 [Pongo
abelii]
Length = 414
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|443685606|gb|ELT89160.1| hypothetical protein CAPTEDRAFT_171549 [Capitella teleta]
Length = 428
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC+
Sbjct: 90 IECIVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRN----CPIDQHHRNQCQ 145
Query: 99 ACRLNKCFMSAMNKD 113
CR KC S M ++
Sbjct: 146 YCRFKKCLKSGMRRE 160
>gi|441616846|ref|XP_004088402.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
Length = 422
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|195051719|ref|XP_001993157.1| GH13232 [Drosophila grimshawi]
gi|193900216|gb|EDV99082.1| GH13232 [Drosophila grimshawi]
Length = 774
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 239 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FARNCVVDKDKRNQCRYC 294
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 295 RLRKCFKAGMKKE 307
>gi|156556067|emb|CAO79103.1| PNR-like [Aedes aegypti]
gi|403182930|gb|EAT40209.2| AAEL008043-PA [Aedes aegypti]
Length = 422
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGDR+SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 16 CKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----GGKCVVDVSRRNQCQAC 71
Query: 101 RLNKCFMSAMNKD 113
R KC + M ++
Sbjct: 72 RFAKCLQANMRRE 84
>gi|47224170|emb|CAG13090.1| unnamed protein product [Tetraodon nigroviridis]
Length = 746
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+ C
Sbjct: 1 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQYC 56
Query: 101 RLNKCFMSAMNKD 113
RL KC M ++
Sbjct: 57 RLKKCLKVGMRRE 69
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 86 HCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+CPID+ HRNQC+ CRL KC M ++
Sbjct: 458 NCPIDQHHRNQCQYCRLKKCLKVGMRRE 485
>gi|195443458|ref|XP_002069434.1| GK18664 [Drosophila willistoni]
gi|194165519|gb|EDW80420.1| GK18664 [Drosophila willistoni]
Length = 691
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 129 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FSRNCVVDKDKRNQCRYC 184
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 185 RLRKCFKAGMKKE 197
>gi|405966658|gb|EKC31918.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 707
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 38/74 (51%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VCGD++SG+HYG SC+GC GFFKRSI + Y C+ D CP++K HRN+C+
Sbjct: 178 PCVVCGDKASGRHYGCTSCEGCKGFFKRSIRKQLGYACRGNKD----CPVNKPHRNRCQY 233
Query: 100 CRLNKCFMSAMNKD 113
CRL KC M +
Sbjct: 234 CRLQKCLAVGMRAE 247
>gi|380027402|ref|XP_003697414.1| PREDICTED: COUP transcription factor 2-like [Apis florea]
Length = 393
Score = 97.8 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 11 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCIVDVSRRNQCQAC 66
Query: 101 RLNKCFMSAMNKD 113
R KC M +D
Sbjct: 67 RFTKCLQVNMKRD 79
>gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx mori]
Length = 421
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S++ D+ ++ C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ CPI
Sbjct: 69 SSATDKGQNVECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRS----CPI 124
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
D+ HRNQC+ CRL KC M ++
Sbjct: 125 DQHHRNQCQFCRLRKCLKMGMRRE 148
>gi|17508461|ref|NP_492607.1| Protein NHR-62, isoform a [Caenorhabditis elegans]
gi|74956442|sp|O02279.3|NHR62_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-62
gi|14530651|emb|CAA21675.2| Protein NHR-62, isoform a [Caenorhabditis elegans]
Length = 515
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
++ +++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K
Sbjct: 90 KNSTINLVCVVCGDQAFGKHYGVNACNGCKGFFRRSVWHNRQYLCR----FEGRCAIAKE 145
Query: 93 HRNQCRACRLNKCFMSAMN 111
HRN CRACRL +CF++ MN
Sbjct: 146 HRNVCRACRLKQCFVAGMN 164
>gi|341898179|gb|EGT54114.1| hypothetical protein CAEBREN_05776 [Caenorhabditis brenneri]
Length = 520
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
++ +++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K
Sbjct: 86 KNSTINLICVVCGDQAFGKHYGVNACNGCKGFFRRSVWNNRQYLCR----FEGRCAIAKE 141
Query: 93 HRNQCRACRLNKCFMSAMN 111
HRN CRACRL +CF++ MN
Sbjct: 142 HRNVCRACRLKQCFVAGMN 160
>gi|45387535|ref|NP_991109.1| hepatic nuclear factor 4, beta [Danio rerio]
gi|41351199|gb|AAH65657.1| Hepatic nuclear factor 4, beta [Danio rerio]
Length = 465
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +C DR++GKHYG SCDGC GFF+RS+ +N YTC+ C +DK RNQCR C
Sbjct: 63 CAICADRATGKHYGASSCDGCKGFFRRSVRKNHAYTCR----FSRQCVVDKDKRNQCRYC 118
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 119 RLRKCFRAGMRKE 131
>gi|324512063|gb|ADY45006.1| Steroid receptor seven-up, isoform B/C [Ascaris suum]
Length = 417
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 95
LL C VCGD+SSGKHYG +SC+GC FFKRSI R+ YTC+ + CP+D HRN
Sbjct: 72 LLGTECVVCGDKSSGKHYGQFSCEGCKSFFKRSIRRSLSYTCRGSKN----CPVDINHRN 127
Query: 96 QCRACRLNKCFMSAMNKD 113
QC+ CRL KC M K+
Sbjct: 128 QCQYCRLKKCEKMGMRKE 145
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 144 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 199
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 200 RYQKCLAMGMKRE 212
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 144 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 199
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 200 RYQKCLAMGMKRE 212
>gi|156378253|ref|XP_001631058.1| predicted protein [Nematostella vectensis]
gi|156218091|gb|EDO38995.1| predicted protein [Nematostella vectensis]
Length = 378
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD +GKHYG+ +C+GC GFFKR++ +N +YTC+ D C IDK HRN+C+ C
Sbjct: 13 CKVCGDNGTGKHYGVVACEGCKGFFKRTVRKNLIYTCRGSND----CFIDKVHRNRCQKC 68
Query: 101 RLNKCFMSAMNKD 113
R KC + M K+
Sbjct: 69 RFVKCLTAGMKKE 81
>gi|195055334|ref|XP_001994574.1| GH17319 [Drosophila grimshawi]
gi|193892337|gb|EDV91203.1| GH17319 [Drosophila grimshawi]
Length = 542
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
D I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 192 DSKQSIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 247
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQC+ CRL KC M ++
Sbjct: 248 RNQCQYCRLKKCLKMGMRRE 267
>gi|334326740|ref|XP_001371708.2| PREDICTED: nuclear receptor ROR-beta-like [Monodelphis domestica]
Length = 663
Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 151 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCSRQRN----CPIDRTSRNRCQ 206
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 207 HCRLQKCLALGMSRD 221
>gi|313228671|emb|CBY07463.1| unnamed protein product [Oikopleura dioica]
Length = 578
Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCKVCGDRSSG HYGI +C+GC GFF+RS N Y C G C +D+T+RN+C+
Sbjct: 40 IPCKVCGDRSSGIHYGIITCEGCKGFFRRSQQNNARYNCPRSGT----CVVDRTNRNRCQ 95
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC M++D
Sbjct: 96 ACRLKKCLGLGMSRD 110
>gi|170587670|ref|XP_001898597.1| Steroid receptor seven-up type 2 [Brugia malayi]
gi|158593867|gb|EDP32461.1| Steroid receptor seven-up type 2, putative [Brugia malayi]
Length = 530
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 44/88 (50%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 26 RDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKG 85
R + + LL C VCGD+SSGKHYG +SC+GC FFKRSI R+ YTC+ +
Sbjct: 173 RTIHPIDKQLLLGTECVVCGDKSSGKHYGQFSCEGCKSFFKRSIRRSLNYTCRGSKN--- 229
Query: 86 HCPIDKTHRNQCRACRLNKCFMSAMNKD 113
CP+D HRNQC+ CRL KC M K+
Sbjct: 230 -CPVDVNHRNQCQYCRLKKCERMGMRKE 256
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 143 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 198
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 199 RYQKCLAMGMKRE 211
>gi|149755798|ref|XP_001492700.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Equus caballus]
Length = 539
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|55925486|ref|NP_956886.1| nuclear receptor subfamily 2 group F member 1-B [Danio rerio]
gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-B;
AltName: Full=COUP transcription factor 1-B;
Short=COUP-TFalpha-B
gi|34785135|gb|AAH56748.1| Nuclear receptor subfamily 2, group F, member 1b [Danio rerio]
Length = 389
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CP+D+ HRNQC+
Sbjct: 52 VECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPVDQHHRNQCQ 107
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 108 YCRLKKCLKVGMRRE 122
>gi|41351197|gb|AAH65651.1| Nr2f1b protein [Danio rerio]
Length = 388
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CP+D+ HRNQC+
Sbjct: 52 VECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPVDQHHRNQCQ 107
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 108 YCRLKKCLKVGMRRE 122
>gi|10198057|gb|AAG15163.1| nuclear receptor NHR-62 [Caenorhabditis elegans]
Length = 489
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
++ +++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K
Sbjct: 64 KNSTINLVCVVCGDQAFGKHYGVNACNGCKGFFRRSVWHNRQYLCR----FEGRCAIAKE 119
Query: 93 HRNQCRACRLNKCFMSAMN 111
HRN CRACRL +CF++ MN
Sbjct: 120 HRNVCRACRLKQCFVAGMN 138
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 127 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 182
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 183 RYQKCLAMGMKRE 195
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 112 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKD----CLI 167
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 168 DKRQRNRCQYCRYQKCLVMGMKRE 191
>gi|327272700|ref|XP_003221122.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Anolis carolinensis]
Length = 641
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 15/107 (14%)
Query: 17 QYFMSRPD----------GRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFK 66
Q F + PD T + +++ D+ C VCGD++SG+HYG +C+GC GFFK
Sbjct: 117 QLFFTSPDISTQHIQILTDSSSTEQTLNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFK 175
Query: 67 RSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
RSI +N VY+C+ D C I+K HRN+C+ CRL +C M +D
Sbjct: 176 RSIRKNLVYSCRGTRD----CVINKHHRNRCQYCRLQRCIAFGMKQD 218
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 138 STSPSSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 193
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 194 DKRQRNRCQYCRYQKCLVMGMKRE 217
>gi|291239171|ref|XP_002739506.1| PREDICTED: nuclear orphan receptor TR2/4-like [Saccoglossus
kowalevskii]
Length = 595
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/74 (51%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VCGD++SG+HYG+ SC+GC GFFKRSI + YTC+ D C + K HRN+C+
Sbjct: 106 PCVVCGDKASGRHYGVVSCEGCKGFFKRSIRKQLCYTCRGSKD----CQVTKHHRNRCQF 161
Query: 100 CRLNKCFMSAMNKD 113
CRL KC M +
Sbjct: 162 CRLQKCLAMGMKAE 175
>gi|348501001|ref|XP_003438059.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 410
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 25 GRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 84
G D+ + D+ + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC++ +
Sbjct: 37 GSDMEAGEDDKACVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRSNRE-- 94
Query: 85 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 --CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2 group F member 5 [Danio rerio]
gi|6094378|sp|Q06726.1|NR2F5_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 5;
AltName: Full=Steroid receptor homolog SVP 46
gi|296421|emb|CAA49781.1| spv 46 [Danio rerio]
gi|190339654|gb|AAI62999.1| Nr2f5 protein [Danio rerio]
gi|190340229|gb|AAI62963.1| Nuclear receptor subfamily 2, group F, member 5 [Danio rerio]
Length = 403
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 8 CRQIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKR 67
C Q P P G D S D++ ++ C VCGD+SSGKHYG ++C+GC FFKR
Sbjct: 23 CSQEPGGTPGTPSGSTPGNDALSG--DKIPNVDCMVCGDKSSGKHYGQFTCEGCKSFFKR 80
Query: 68 SIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
S+ RN YTC+ D CPID+ HRNQC+ CRL KC M ++
Sbjct: 81 SVRRNLSYTCRGNRD----CPIDQHHRNQCQYCRLKKCLKVGMRRE 122
>gi|449273615|gb|EMC83088.1| Nuclear receptor subfamily 2 group E member 1, partial [Columba
livia]
Length = 376
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/51 (76%), Positives = 44/51 (86%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKG 85
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G
Sbjct: 9 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQQRG 59
>gi|308494386|ref|XP_003109382.1| CRE-NHR-62 protein [Caenorhabditis remanei]
gi|308246795|gb|EFO90747.1| CRE-NHR-62 protein [Caenorhabditis remanei]
Length = 515
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
++ +++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K
Sbjct: 91 KNSTVNLICVVCGDQAFGKHYGVNACNGCKGFFRRSVWNNRQYLCR----FEGRCAIAKE 146
Query: 93 HRNQCRACRLNKCFMSAMN 111
HRN CRACRL +CF++ MN
Sbjct: 147 HRNVCRACRLKQCFVAGMN 165
>gi|432854604|ref|XP_004067983.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 27 DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 86
DV A D+ + C VCGD+SSGKHYG+++C+GC FFKRSI RN Y+C++ D
Sbjct: 39 DVDVADEDKGCVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYSCRSNRD---- 94
Query: 87 CPIDKTHRNQCRACRLNKCFMSAMNKD 113
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|375151577|ref|NP_001243499.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|375151581|ref|NP_001243500.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|410034069|ref|XP_003949681.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
gi|410034071|ref|XP_003949682.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
Length = 340
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 5 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 60
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 61 DKRQRNRCQYCRYQKCLVMGMKRE 84
>gi|47086055|ref|NP_998404.1| nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
gi|40807068|gb|AAH65332.1| Nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
Length = 404
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 27 DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 86
DV D+ + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ +
Sbjct: 39 DVEGGEEDKACVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLNYTCRSNRE---- 94
Query: 87 CPIDKTHRNQCRACRLNKCFMSAMNKD 113
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 5 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 60
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 61 DKRQRNRCQYCRYQKCLVMGMKRE 84
>gi|397491841|ref|XP_003816848.1| PREDICTED: COUP transcription factor 2 [Pan paniscus]
Length = 367
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 58 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 113
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 114 YCRLKKCLKVGMRRE 128
>gi|348511313|ref|XP_003443189.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oreochromis niloticus]
Length = 404
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 8 CRQIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKR 67
C Q P P G D S D++ ++ C VCGD+SSGKHYG ++C+GC FFKR
Sbjct: 23 CGQEPGGAPGTPNGSTPGNDALSG--DKIPNVDCMVCGDKSSGKHYGQFTCEGCKSFFKR 80
Query: 68 SIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
S+ RN YTC+ D CPID+ HRNQC+ CRL KC M ++
Sbjct: 81 SVRRNLTYTCRGNRD----CPIDQHHRNQCQYCRLKKCLKVGMRRE 122
>gi|56090166|ref|NP_991120.1| nuclear receptor subfamily 2, group F, member 6 [Danio rerio]
gi|40807137|gb|AAH65330.1| Nuclear receptor subfamily 2, group F, member 6a [Danio rerio]
Length = 402
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 25 GRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 84
G D+ + D+ + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC++ D
Sbjct: 37 GSDMEAGEDDKGCVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLNYTCRSNRD-- 94
Query: 85 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 --CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|10198055|gb|AAG15162.1| nuclear receptor NHR-62 [Caenorhabditis elegans]
Length = 454
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
++ +++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K
Sbjct: 29 KNSTINLVCVVCGDQAFGKHYGVNACNGCKGFFRRSVWHNRQYLCR----FEGRCAIAKE 84
Query: 93 HRNQCRACRLNKCFMSAMN 111
HRN CRACRL +CF++ MN
Sbjct: 85 HRNVCRACRLKQCFVAGMN 103
>gi|353231555|emb|CCD77973.1| putative coup transcription factor [Schistosoma mansoni]
Length = 1064
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG Y+C+GC FFKRS+ R YTC+ CPID HRNQC+
Sbjct: 387 IECVVCGDKSSGKHYGQYTCEGCKSFFKRSVRRQLNYTCRNN----KQCPIDINHRNQCQ 442
Query: 99 ACRLNKCFMSAMNKD 113
CR KC M K+
Sbjct: 443 YCRFQKCIKVGMRKE 457
>gi|432910588|ref|XP_004078428.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oryzias latipes]
Length = 404
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 6/89 (6%)
Query: 25 GRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 84
G D S D++ ++ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+ D
Sbjct: 40 GNDALSG--DKIPNVDCMVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRD-- 95
Query: 85 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
CPID+ HRNQC+ CRL KC M ++
Sbjct: 96 --CPIDQHHRNQCQYCRLKKCLKVGMRRE 122
>gi|268564979|ref|XP_002639292.1| C. briggsae CBR-NHR-62 protein [Caenorhabditis briggsae]
Length = 487
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
++ +++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K
Sbjct: 63 KNSTVNLICVVCGDQAFGKHYGVNACNGCKGFFRRSVWNNRQYLCR----FEGRCAIAKE 118
Query: 93 HRNQCRACRLNKCFMSAMN 111
HRN CRACRL +CF++ MN
Sbjct: 119 HRNVCRACRLKQCFVAGMN 137
>gi|149637974|ref|XP_001510105.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Ornithorhynchus anatinus]
Length = 561
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 29 TSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
T + +++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C
Sbjct: 58 TDQTPNKIFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CI 112
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
I+K HRN+C+ CRL +C M +D
Sbjct: 113 INKHHRNRCQYCRLQRCIAFGMKQD 137
>gi|326924824|ref|XP_003208625.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Meleagris
gallopavo]
Length = 494
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 143 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 198
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 199 RYQKCLAMGMKRE 211
>gi|321461128|gb|EFX72163.1| hypothetical protein DAPPUDRAFT_59378 [Daphnia pulex]
Length = 384
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N VYTC+ HC +DK RNQCR C
Sbjct: 61 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHVYTCR----FNRHCVVDKDKRNQCRYC 116
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 117 RLGKCFKAGMKKE 129
>gi|432913184|ref|XP_004078947.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 25 GRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 84
G D+ + D+ + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC++ +
Sbjct: 37 GSDMEAGDDDKACVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRSNRE-- 94
Query: 85 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 --CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|440893234|gb|ELR46081.1| Nuclear receptor subfamily 2 group F member 6, partial [Bos
grunniens mutus]
Length = 441
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 83 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 138
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 139 CQYCRLKKCFRVGMRKE 155
>gi|311256682|ref|XP_003126756.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like [Sus
scrofa]
Length = 605
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K HRN+C+ C
Sbjct: 114 CVVCGDRASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHHRNRCQYC 169
Query: 101 RLNKCFMSAMNKD 113
RL +C M +D
Sbjct: 170 RLQRCIAFGMKQD 182
>gi|395820061|ref|XP_003783394.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Otolemur
garnettii]
Length = 604
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/106 (43%), Positives = 65/106 (61%), Gaps = 14/106 (13%)
Query: 17 QYFMSRPDGRD-----VTSASRD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKR 67
Q F + PD +T +S D ++ D+ C VCGD++SG+HYG +C+GC GFFKR
Sbjct: 81 QLFFTTPDLSAQHLQLLTDSSADQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKR 139
Query: 68 SIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
SI +N VY+C+ D C I+K HRN+C+ CRL +C M +D
Sbjct: 140 SIRKNLVYSCRGSKD----CIINKHHRNRCQYCRLQRCIAFGMKQD 181
>gi|348574546|ref|XP_003473051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cavia porcellus]
Length = 549
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 222 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 277
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 278 RYQKCLAMGMKRE 290
>gi|301753845|ref|XP_002912831.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6-like, partial [Ailuropoda melanoleuca]
Length = 323
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 39 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 94
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 95 CQYCRLKKCFRVGMRKE 111
>gi|126339675|ref|XP_001370429.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Monodelphis domestica]
Length = 605
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 15/107 (14%)
Query: 17 QYFMSRPD----------GRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFK 66
Q F + PD + + +++ D+ C VCGD++SG+HYG +C+GC GFFK
Sbjct: 81 QLFFTAPDLSAQHIQILTDHSSSDQTPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFK 139
Query: 67 RSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
RSI +N VY+C+ D C I+K HRN+C+ CRL +C M +D
Sbjct: 140 RSIRKNLVYSCRGSKD----CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|395538223|ref|XP_003771084.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Sarcophilus harrisii]
Length = 605
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|351702679|gb|EHB05598.1| Retinoic acid receptor RXR-gamma-A [Heterocephalus glaber]
Length = 616
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 212 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 267
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 268 RYQKCLAMGMKRE 280
>gi|326930478|ref|XP_003211374.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-alpha-like [Meleagris gallopavo]
Length = 497
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 170 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 225
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 226 RYQKCLAMGMKRE 238
>gi|449266899|gb|EMC77883.1| Nuclear receptor subfamily 2 group C member 1 [Columba livia]
Length = 640
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 144 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGTKD----CVINKHH 198
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 199 RNRCQYCRLQRCIAFGMKQD 218
>gi|358335063|dbj|GAA34732.2| nuclear receptor subfamily 2 group F member 1-B [Clonorchis
sinensis]
Length = 748
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
+D +VCGDRSSGKHYG ++C+GC FFKRS+ ++ Y C+++ G CP+D RNQ
Sbjct: 216 VDQQARVCGDRSSGKHYGQFTCEGCKSFFKRSVRKSASYVCRSE----GQCPVDAQRRNQ 271
Query: 97 CRACRLNKCFMSAMNKD 113
C+ACR+ +C ++ M K+
Sbjct: 272 CQACRMTRCLLAGMKKE 288
>gi|72148318|ref|XP_795547.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 483
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+PCKVCGD+S GKHYG+Y CDGCS FFKRSI RN YTC KG+C +DK RN C
Sbjct: 9 VPCKVCGDKSYGKHYGVYCCDGCSCFFKRSIRRNMRYTCIG----KGNCLVDKARRNWCP 64
Query: 99 ACRLNKCFMSAMNKD 113
CRL KCF MNK
Sbjct: 65 YCRLKKCFAVNMNKS 79
>gi|348505482|ref|XP_003440290.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Oreochromis
niloticus]
Length = 781
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 454 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CVIDKRQRNRCQYC 509
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 510 RYQKCLAMGMKRE 522
>gi|344236487|gb|EGV92590.1| Nuclear receptor ROR-alpha [Cricetulus griseus]
Length = 959
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 13 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 68
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 69 HCRLQKCLAVGMSRD 83
>gi|19743905|ref|NP_599024.1| nuclear receptor ROR-alpha isoform d [Homo sapiens]
gi|335279592|ref|XP_001928189.3| PREDICTED: nuclear receptor ROR-alpha [Sus scrofa]
gi|71680298|gb|AAI00990.1| RAR-related orphan receptor A [Homo sapiens]
gi|71681741|gb|AAI00989.1| RAR-related orphan receptor A [Homo sapiens]
gi|72533311|gb|AAI00988.1| RAR-related orphan receptor A [Homo sapiens]
gi|72533486|gb|AAI00991.1| RAR-related orphan receptor A [Homo sapiens]
gi|119598000|gb|EAW77594.1| RAR-related orphan receptor A, isoform CRA_b [Homo sapiens]
gi|325495447|gb|ADZ17329.1| thyroid hormone nuclear receptor alpha variant 4 [Homo sapiens]
gi|410218696|gb|JAA06567.1| RAR-related orphan receptor A [Pan troglodytes]
gi|410255712|gb|JAA15823.1| RAR-related orphan receptor A [Pan troglodytes]
gi|410306084|gb|JAA31642.1| RAR-related orphan receptor A [Pan troglodytes]
gi|410352249|gb|JAA42728.1| RAR-related orphan receptor A [Pan troglodytes]
Length = 468
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 87
V +A + ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C
Sbjct: 5 VIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----C 60
Query: 88 PIDKTHRNQCRACRLNKCFMSAMNKD 113
ID+T RN+C+ CRL KC M++D
Sbjct: 61 LIDRTSRNRCQHCRLQKCLAVGMSRD 86
>gi|2570170|dbj|BAA22970.1| mROR4 [Mus caroli]
gi|9653297|gb|AAB46801.2| orphan nuclear receptor [Mus sp.]
Length = 466
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 87
V +A + ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C
Sbjct: 4 VIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----C 59
Query: 88 PIDKTHRNQCRACRLNKCFMSAMNKD 113
ID+T RN+C+ CRL KC M++D
Sbjct: 60 LIDRTSRNRCQHCRLQKCLAVGMSRD 85
>gi|402874466|ref|XP_003901058.1| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Papio anubis]
Length = 468
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 87
V +A + ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C
Sbjct: 5 VIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----C 60
Query: 88 PIDKTHRNQCRACRLNKCFMSAMNKD 113
ID+T RN+C+ CRL KC M++D
Sbjct: 61 LIDRTSRNRCQHCRLQKCLAVGMSRD 86
>gi|325495551|gb|ADZ17381.1| thyroid hormone nuclear receptor alpha [Homo sapiens]
Length = 467
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 87
V +A + ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C
Sbjct: 5 VIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----C 60
Query: 88 PIDKTHRNQCRACRLNKCFMSAMNKD 113
ID+T RN+C+ CRL KC M++D
Sbjct: 61 LIDRTSRNRCQHCRLQKCLAVGMSRD 86
>gi|297296572|ref|XP_001100971.2| PREDICTED: nuclear receptor ROR-alpha-like isoform 2 [Macaca
mulatta]
Length = 468
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 87
V +A + ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C
Sbjct: 5 VIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----C 60
Query: 88 PIDKTHRNQCRACRLNKCFMSAMNKD 113
ID+T RN+C+ CRL KC M++D
Sbjct: 61 LIDRTSRNRCQHCRLQKCLAVGMSRD 86
>gi|1869971|emb|CAB05396.1| nuclear orphan receptor/transcription factor [Mus musculus]
gi|74143434|dbj|BAE28797.1| unnamed protein product [Mus musculus]
gi|74214884|dbj|BAE33451.1| unnamed protein product [Mus musculus]
Length = 467
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 87
V +A + ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C
Sbjct: 4 VIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----C 59
Query: 88 PIDKTHRNQCRACRLNKCFMSAMNKD 113
ID+T RN+C+ CRL KC M++D
Sbjct: 60 LIDRTSRNRCQHCRLQKCLAVGMSRD 85
>gi|45383862|ref|NP_989455.1| nuclear receptor subfamily 2 group C member 1 [Gallus gallus]
gi|21518633|gb|AAM60748.1|AF323691_1 testis-specific receptor 2-like protein TRR [Gallus gallus]
Length = 569
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 67 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGTKD----CVINKHH 121
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 122 RNRCQYCRLQRCIAFGMKQD 141
>gi|355703292|gb|EHH29783.1| hypothetical protein EGK_10292, partial [Macaca mulatta]
Length = 227
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 31 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 86
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 87 CQYCRLKKCFRVGMRKE 103
>gi|326926497|ref|XP_003209436.1| PREDICTED: nuclear receptor ROR-alpha-like [Meleagris gallopavo]
Length = 543
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 91 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 146
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 147 HCRLQKCLAVGMSRD 161
>gi|405966252|gb|EKC31559.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 622
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S +DR +I C VCGD++SGKHYG+ SCDGC GFFKRSI R+ Y CK G+ C +
Sbjct: 132 SGQQDRKPEILCLVCGDKASGKHYGVQSCDGCRGFFKRSIRRSLEYVCKENGN----CVV 187
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
D RNQC+ACR KC MN+D
Sbjct: 188 DVARRNQCQACRFRKCLEMKMNRD 211
>gi|154434695|gb|ABS82445.1| nuclear receptor 7 [Pocillopora damicornis]
Length = 168
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 4/86 (4%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 87
V S + + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC+A + C
Sbjct: 17 VEEPSEKNVQQVECAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRASRN----C 72
Query: 88 PIDKTHRNQCRACRLNKCFMSAMNKD 113
PID+ HRNQC+ CRL KC M ++
Sbjct: 73 PIDQHHRNQCQYCRLRKCIKVGMRRE 98
>gi|449491752|ref|XP_002191570.2| PREDICTED: nuclear receptor ROR-beta-like [Taeniopygia guttata]
Length = 461
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 104 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCSRQRN----CLIDRTNRNRCQ 159
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 160 HCRLQKCLALGMSRD 174
>gi|431905326|gb|ELK10371.1| Nuclear receptor subfamily 2 group C member 1 [Pteropus alecto]
Length = 605
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKIFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|156119469|ref|NP_001095229.1| nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis]
gi|64643|emb|CAA44806.1| Coup transcription factor [Xenopus laevis]
Length = 397
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 66/111 (59%), Gaps = 7/111 (6%)
Query: 6 GNCRQIP---PRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCS 62
G C Q P P+ P G+D + + ++ C VCGD+SSGKHYG ++C+GC
Sbjct: 25 GLCNQDPGGTPQTPTTPKGGIPGQDPVHSGDKGVPNVDCLVCGDKSSGKHYGQFTCEGCK 84
Query: 63 GFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
FFKRS+ RN YTC++ D CPID+ HRNQC+ CRL KC M ++
Sbjct: 85 SFFKRSVRRNLTYTCRSNRD----CPIDQHHRNQCQYCRLKKCLKVGMRRE 131
>gi|327263554|ref|XP_003216584.1| PREDICTED: nuclear receptor ROR-beta-like [Anolis carolinensis]
Length = 540
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 89 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 144
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 145 HCRLQKCLALGMSRD 159
>gi|345782792|ref|XP_540323.3| PREDICTED: nuclear receptor ROR-gamma [Canis lupus familiaris]
Length = 500
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N VY+C Q + CPID+T RN+C+
Sbjct: 11 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVVYSCTRQQN----CPIDRTSRNRCQ 66
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 67 HCRLQKCLALGMSRD 81
>gi|345323218|ref|XP_001506671.2| PREDICTED: nuclear receptor ROR-beta [Ornithorhynchus anatinus]
Length = 688
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 237 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 292
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 293 HCRLQKCLALGMSRD 307
>gi|387017404|gb|AFJ50820.1| Nuclear receptor subfamily 2 group C member 1-A-like [Crotalus
adamanteus]
Length = 640
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 143 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGTRD----CVINKHH 197
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 198 RNRCQYCRLQRCIAFGMKQD 217
>gi|301618212|ref|XP_002938509.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Xenopus (Silurana) tropicalis]
Length = 398
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
Query: 6 GNCRQIP---PRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCS 62
G C Q P P+ P G+D + + ++ C VCGD+SSGKHYG ++C+GC
Sbjct: 25 GLCNQDPGGTPQTPTTPKGGVPGQDPVHSGDKGVPNVDCLVCGDKSSGKHYGQFTCEGCK 84
Query: 63 GFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
FFKRS+ RN YTC+ D CPID+ HRNQC+ CRL KC M ++
Sbjct: 85 SFFKRSVRRNLTYTCRGNRD----CPIDQHHRNQCQYCRLKKCLKVGMRRE 131
>gi|130493601|ref|NP_001076288.1| RAR-related orphan receptor C a [Danio rerio]
gi|126508457|gb|ABO15414.1| retinoid-related orphan receptor c [Danio rerio]
Length = 479
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N +Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRN----CIIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|355564580|gb|EHH21080.1| Orphan nuclear receptor TR2 [Macaca mulatta]
Length = 558
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|194225999|ref|XP_001917400.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Equus caballus]
Length = 587
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 260 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 315
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 316 RYQKCLAMGMKRE 328
>gi|149742912|ref|XP_001493970.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 1
[Equus caballus]
Length = 605
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 152 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 207
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 208 RYQKCLAMGMKRE 220
>gi|345795020|ref|XP_535503.3| PREDICTED: nuclear receptor ROR-alpha [Canis lupus familiaris]
Length = 523
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 17 QYFMSRPDGRDVTSASRDRLLDI-PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
Q + S G VT + ++I PCK+CGD+SSG HYG+ +C+GC GFF+RS N Y
Sbjct: 48 QSYSSTSRGISVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATY 107
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+C Q + C ID+T RN+C+ CRL KC M++D
Sbjct: 108 SCPRQKN----CLIDRTSRNRCQHCRLQKCLAVGMSRD 141
>gi|326911680|ref|XP_003202184.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Meleagris gallopavo]
Length = 562
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 67 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGTKD----CVINKHH 121
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 122 RNRCQYCRLQRCIAFGMKQD 141
>gi|339248543|ref|XP_003373259.1| COUP transcription factor 1 [Trichinella spiralis]
gi|316970658|gb|EFV54551.1| COUP transcription factor 1 [Trichinella spiralis]
Length = 490
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 29 TSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
TSA + I C VC D+SSGKHYG ++C+GC FFKRS+ RN YTC+ + C
Sbjct: 178 TSAEKQSSQFIECVVCHDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNKN----CS 233
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
ID HRNQC+ CRL KC M K+
Sbjct: 234 IDVHHRNQCQYCRLKKCVKMGMRKE 258
>gi|339887|gb|AAA36761.1| steroid receptor TR2-11 [Homo sapiens]
Length = 603
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 107 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 161
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 162 RNRCQYCRLQRCIAFGMKQD 181
>gi|402887264|ref|XP_003907017.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 1 [Papio anubis]
gi|380816090|gb|AFE79919.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
gi|383421223|gb|AFH33825.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
gi|384949168|gb|AFI38189.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
Length = 604
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|383855696|ref|XP_003703346.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Megachile
rotundata]
Length = 394
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 66/110 (60%), Gaps = 6/110 (5%)
Query: 4 FVGNCRQIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSG 63
VGN +PP S+ + S+ D+ +I C VCGD+SSGKHYG ++C+GC
Sbjct: 16 LVGNRDPLPPSTTPG--SQANSSQSGSSQTDKSPNIECVVCGDKSSGKHYGQFTCEGCKS 73
Query: 64 FFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
FFKRS+ RN Y+C+ + CPID+ HRNQC+ CRL KC M ++
Sbjct: 74 FFKRSVRRNLTYSCRGNRN----CPIDQHHRNQCQFCRLKKCLKMGMRRE 119
>gi|296212600|ref|XP_002752912.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Callithrix jacchus]
Length = 604
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKIFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|351712230|gb|EHB15149.1| Nuclear receptor subfamily 2 group C member 1 [Heterocephalus
glaber]
Length = 606
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 109 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 163
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 164 RNRCQYCRLQRCIAFGMKQD 183
>gi|75066579|sp|Q95K90.1|NR2C1_MACFA RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|14388521|dbj|BAB60786.1| hypothetical protein [Macaca fascicularis]
gi|355762671|gb|EHH62044.1| Orphan nuclear receptor TR2 [Macaca fascicularis]
Length = 603
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 107 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 161
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 162 RNRCQYCRLQRCIAFGMKQD 181
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 145 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 200
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 201 RYQKCLAMGMKRE 213
>gi|291389741|ref|XP_002711252.1| PREDICTED: nuclear receptor subfamily 2, group C, member 1
[Oryctolagus cuniculus]
Length = 605
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|158256074|dbj|BAF84008.1| unnamed protein product [Homo sapiens]
Length = 603
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 107 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 161
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 162 RNRCQYCRLQRCIAFGMKQD 181
>gi|296487946|tpg|DAA30059.1| TPA: nuclear receptor subfamily 2, group C, member 1 [Bos taurus]
Length = 608
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|189491739|ref|NP_003288.2| nuclear receptor subfamily 2 group C member 1 isoform a [Homo
sapiens]
gi|226693548|sp|P13056.2|NR2C1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2
gi|119617925|gb|EAW97519.1| nuclear receptor subfamily 2, group C, member 1, isoform CRA_c
[Homo sapiens]
gi|307686061|dbj|BAJ20961.1| nuclear receptor subfamily 2, group C, member 1 [synthetic
construct]
gi|381146193|gb|AFF59487.1| testicular nuclear receptor 2 variant 1 [Homo sapiens]
Length = 603
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 107 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 161
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 162 RNRCQYCRLQRCIAFGMKQD 181
>gi|410965258|ref|XP_003989167.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Felis
catus]
Length = 605
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMRQD 182
>gi|449279574|gb|EMC87146.1| Nuclear receptor ROR-beta, partial [Columba livia]
Length = 466
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 9 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCSRQRN----CLIDRTNRNRCQ 64
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 65 HCRLQKCLALGMSRD 79
>gi|403303546|ref|XP_003942387.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Saimiri
boliviensis boliviensis]
Length = 238
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 22 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 77
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 78 CQYCRLKKCFRVGMRKE 94
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 189 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 244
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 245 RYQKCLAMGMKRE 257
>gi|444720729|gb|ELW61505.1| Nuclear receptor subfamily 2 group C member 1 [Tupaia chinensis]
Length = 606
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K HRN+C+ C
Sbjct: 114 CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHHRNRCQYC 169
Query: 101 RLNKCFMSAMNKD 113
RL +C M +D
Sbjct: 170 RLQRCIAFGMKQD 182
>gi|410950838|ref|XP_003982110.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Felis
catus]
Length = 263
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 55 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 110
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 111 CQYCRLKKCFRVGMRKE 127
>gi|73978201|ref|XP_854792.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Canis
lupus familiaris]
Length = 605
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMRQD 182
>gi|18157523|dbj|BAB83838.1| RXRB [Oryzias latipes]
Length = 427
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C +DK RN+C+ C
Sbjct: 93 CSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CTVDKRQRNRCQYC 148
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 149 RYQKCLAMGMKRE 161
>gi|301767748|ref|XP_002919289.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Ailuropoda melanoleuca]
Length = 605
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMRQD 182
>gi|410929439|ref|XP_003978107.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 406
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 27 DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 86
DV D+ + C VCGD+SSGKHYG++SC+GC FFKRSI RN Y+C++ +
Sbjct: 39 DVDVGDEDKACVVDCVVCGDKSSGKHYGVFSCEGCKSFFKRSIRRNLNYSCRSNRE---- 94
Query: 87 CPIDKTHRNQCRACRLNKCFMSAMNKD 113
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 144 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CIIDKRQRNRCQYC 199
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 200 RYQKCLAMGMKRE 212
>gi|4506577|ref|NP_002934.1| nuclear receptor ROR-alpha isoform c [Homo sapiens]
gi|451568|gb|AAA62660.1| RORalpha3 [Homo sapiens]
gi|119598001|gb|EAW77595.1| RAR-related orphan receptor A, isoform CRA_c [Homo sapiens]
Length = 548
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 96 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 151
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 152 HCRLQKCLAVGMSRD 166
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|397515460|ref|XP_003827969.1| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Pan paniscus]
Length = 516
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 64 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 119
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 120 HCRLQKCLAVGMSRD 134
>gi|395746802|ref|XP_003778512.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Pongo abelii]
Length = 516
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 64 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 119
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 120 HCRLQKCLAVGMSRD 134
>gi|171846245|ref|NP_035759.3| nuclear receptor subfamily 2 group C member 1 [Mus musculus]
gi|341942228|sp|Q505F1.3|NR2C1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2; Short=mTR2
gi|63101502|gb|AAH94580.1| Nr2c1 protein [Mus musculus]
gi|74143559|dbj|BAE28842.1| unnamed protein product [Mus musculus]
gi|111598870|gb|AAH90662.1| Nr2c1 protein [Mus musculus]
Length = 590
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 9/98 (9%)
Query: 20 MSRPDGRDVTSASRD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
+S P + +T S D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY
Sbjct: 77 LSAPHLQLLTEKSPDQGPNKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVY 135
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+C+ D C I+K HRN+C+ CRL +C M +D
Sbjct: 136 SCRGSKD----CVINKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|440892538|gb|ELR45692.1| Nuclear receptor subfamily 2 group C member 1 [Bos grunniens mutus]
Length = 618
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|426224304|ref|XP_004006312.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Ovis
aries]
Length = 608
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|74147214|dbj|BAE27509.1| unnamed protein product [Mus musculus]
Length = 590
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 9/98 (9%)
Query: 20 MSRPDGRDVTSASRD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
+S P + +T S D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY
Sbjct: 77 LSAPHLQLLTEKSPDQGPNKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVY 135
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+C+ D C I+K HRN+C+ CRL +C M +D
Sbjct: 136 SCRGSKD----CVINKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|380791717|gb|AFE67734.1| nuclear receptor subfamily 2 group F member 6, partial [Macaca
mulatta]
Length = 240
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|47217403|emb|CAG00763.1| unnamed protein product [Tetraodon nigroviridis]
Length = 432
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 27 DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 86
DV D+ + C VCGD+SSGKHYG++SC+GC FFKRSI RN Y+C++ +
Sbjct: 39 DVDVGDEDKACVVDCVVCGDKSSGKHYGVFSCEGCKSFFKRSIRRNLNYSCRSNRE---- 94
Query: 87 CPIDKTHRNQCRACRLNKCFMSAMNKD 113
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 112 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 167
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 168 RYQKCLAMGMKRE 180
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 112 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 167
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 168 RYQKCLAMGMKRE 180
>gi|197098516|ref|NP_001127276.1| nuclear receptor subfamily 2 group C member 1 [Pongo abelii]
gi|75061946|sp|Q5RCZ5.1|NR2C1_PONAB RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|55727212|emb|CAH90362.1| hypothetical protein [Pongo abelii]
Length = 601
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|344267618|ref|XP_003405663.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Loxodonta africana]
Length = 596
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 100 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 154
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 155 RNRCQYCRLQRCIAFGMKQD 174
>gi|62859085|ref|NP_001016207.1| nuclear receptor subfamily 2 group C member 1 [Xenopus (Silurana)
tropicalis]
gi|123892381|sp|Q28CK1.1|NR2C1_XENTR RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Developmental orphan receptor 2;
Short=DOR2; AltName: Full=Orphan nuclear receptor TR2;
AltName: Full=Testicular receptor 2
gi|89268137|emb|CAJ83740.1| nuclear receptor subfamily 2, group C, member 1; orphan receptor,
TR2-11; nuclear receptor subfamily 2, group H, member 1;
developmental orphan receptor 2 [Xenopus (Silurana)
tropicalis]
gi|114108029|gb|AAI23035.1| nr2c1 protein [Xenopus (Silurana) tropicalis]
Length = 636
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 14/107 (13%)
Query: 17 QYFMSRPD--GRDVTSASRDRLLDIP--------CKVCGDRSSGKHYGIYSCDGCSGFFK 66
Q F+S PD + + S + LD C VCGD++SG+HYG +C+GC GFFK
Sbjct: 118 QLFISTPDVPAQHIQILSDTQCLDQNLNKQLVELCVVCGDKASGRHYGAVTCEGCKGFFK 177
Query: 67 RSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
RSI +N VYTC+ D C I+K +RN+C+ CRL +C M +D
Sbjct: 178 RSIRKNLVYTCRGSKD----CVINKHYRNRCQYCRLQRCIALGMKQD 220
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 103 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CVIDKRQRNRCQYC 158
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 159 RYQKCLAMGMKRE 171
>gi|349096|gb|AAA42095.1| transcription factor, partial [Rattus norvegicus]
Length = 483
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 26 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 81
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 82 NRNRCQHCRLQKCLALGMSRD 102
>gi|402874468|ref|XP_003901059.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Papio anubis]
Length = 515
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 63 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 118
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 119 HCRLQKCLAVGMSRD 133
>gi|395746806|ref|XP_003778513.1| PREDICTED: nuclear receptor ROR-alpha isoform 3 [Pongo abelii]
Length = 493
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 41 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 96
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 97 HCRLQKCLAVGMSRD 111
>gi|441616023|ref|XP_004088336.1| PREDICTED: nuclear receptor ROR-alpha [Nomascus leucogenys]
Length = 493
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 41 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 96
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 97 HCRLQKCLAVGMSRD 111
>gi|410049253|ref|XP_003952715.1| PREDICTED: nuclear receptor ROR-alpha [Pan troglodytes]
Length = 493
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 41 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 96
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 97 HCRLQKCLAVGMSRD 111
>gi|397515464|ref|XP_003827971.1| PREDICTED: nuclear receptor ROR-alpha isoform 3 [Pan paniscus]
gi|426379297|ref|XP_004056337.1| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Gorilla gorilla
gorilla]
Length = 493
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 41 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 96
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 97 HCRLQKCLAVGMSRD 111
>gi|332221160|ref|XP_003259729.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Nomascus
leucogenys]
Length = 604
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 130 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 185
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 186 RYQKCLAMGMKRE 198
>gi|410899971|ref|XP_003963470.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2-like [Takifugu rubripes]
Length = 629
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 62/94 (65%), Gaps = 6/94 (6%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
M R G+ V SR +L++ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 127 MERLLGQTV-DLSRPQLVEY-CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 184
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+ D C I+K HRN+C+ CRL KC M +
Sbjct: 185 KQD----CVINKHHRNRCQFCRLRKCLKMGMKTE 214
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 112 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 167
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 168 RYQKCLAMGMKRE 180
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|403276111|ref|XP_003929757.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Saimiri
boliviensis boliviensis]
Length = 470
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKIFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|395844547|ref|XP_003795021.1| PREDICTED: retinoic acid receptor RXR-alpha [Otolemur garnettii]
Length = 487
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 160 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 215
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 216 RYQKCLAMGMKRE 228
>gi|359070758|ref|XP_002691733.2| PREDICTED: retinoic acid receptor RXR-alpha [Bos taurus]
Length = 756
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 429 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 484
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 485 RYQKCLAMGMKRE 497
>gi|130490232|ref|NP_001076325.1| nuclear receptor ROR-beta [Danio rerio]
gi|126508455|gb|ABO15413.1| retinoid-related orphan receptor b [Danio rerio]
Length = 466
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|395750689|ref|XP_002828930.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pongo
abelii]
Length = 215
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 112 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 167
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 168 RYQKCLAMGMKRE 180
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|432883656|ref|XP_004074314.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 465
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C +DK RN+C+ C
Sbjct: 127 CSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CTVDKRQRNRCQYC 182
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 183 RYQKCLAMGMKRE 195
>gi|380023918|ref|XP_003695756.1| PREDICTED: transcription factor HNF-4 homolog [Apis florea]
Length = 449
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ + YTC+ +C IDK RNQCR C
Sbjct: 35 CAICGDRATGKHYGAASCDGCKGFFRRSVRKKHEYTCR----FSRNCIIDKDKRNQCRYC 90
Query: 101 RLNKCFMSAM 110
RL KCF + M
Sbjct: 91 RLRKCFKAGM 100
>gi|345497210|ref|XP_001599315.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nasonia
vitripennis]
Length = 417
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK C +D + RNQC+AC
Sbjct: 11 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----SQCVVDVSRRNQCQAC 66
Query: 101 RLNKCFMSAMNKD 113
R KC M +D
Sbjct: 67 RFRKCLQVNMKRD 79
>gi|334333054|ref|XP_001372755.2| PREDICTED: nuclear receptor ROR-beta [Monodelphis domestica]
Length = 505
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 74 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 129
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 130 HCRLQKCLALGMSRD 144
>gi|315360629|ref|NP_001186755.1| RAR-related orphan receptor gamma 2 [Oncorhynchus mykiss]
gi|313760286|emb|CAT65102.1| RAR-related orphan receptor gamma 2 protein [Oncorhynchus mykiss]
Length = 469
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N +Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|295656543|gb|ADG26734.1| tailless protein [Platynereis dumerilii]
Length = 190
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 3/62 (4%)
Query: 52 HYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMN 111
+YG+Y+CDGC+GFFKRSI RNR Y CK++ G CP+DKTHRNQCRACRL KC + MN
Sbjct: 2 YYGVYACDGCAGFFKRSIRRNRQYICKSR---NGSCPVDKTHRNQCRACRLKKCLEAGMN 58
Query: 112 KD 113
KD
Sbjct: 59 KD 60
>gi|281347428|gb|EFB23012.1| hypothetical protein PANDA_012073 [Ailuropoda melanoleuca]
Length = 546
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 94 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 149
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 150 HCRLQKCLAVGMSRD 164
>gi|348516240|ref|XP_003445647.1| PREDICTED: nuclear receptor ROR-beta [Oreochromis niloticus]
Length = 481
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 17 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 72
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 73 HCRLQKCLALGMSRD 87
>gi|315360631|ref|NP_001186756.1| RAR-related orphan receptor gamma 1 [Oncorhynchus mykiss]
gi|313760284|emb|CAT65098.1| RAR-related orphan receptor gamma 1 protein [Oncorhynchus mykiss]
Length = 469
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N +Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|449269569|gb|EMC80331.1| Nuclear receptor ROR-beta, partial [Columba livia]
Length = 461
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 10 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 65
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 66 HCRLQKCLALGMSRD 80
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 125 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 180
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 181 RYQKCLAMGMKRE 193
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 131 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CVIDKRQRNRCQYC 186
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 187 RYQKCLAMGMKRE 199
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 112 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 167
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 168 RYQKCLAMGMKRE 180
>gi|327265992|ref|XP_003217791.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Anolis carolinensis]
Length = 629
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 129 SASVERLLAKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 188
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 189 NQD----CIINKHHRNRCQFCRLKKCLEMGM 215
>gi|224066723|ref|XP_002189996.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Taeniopygia guttata]
Length = 629
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 129 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 188
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 189 NQD----CIINKHHRNRCQFCRLKKCLEMGM 215
>gi|391338722|ref|XP_003743704.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Metaseiulus occidentalis]
Length = 394
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 65/98 (66%), Gaps = 5/98 (5%)
Query: 16 PQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
PQ +PD ++ +A++ + +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y
Sbjct: 25 PQSGTPQPD-KNGPTAAQMQAHNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSY 83
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
TC+ + CPID+ HRNQC+ CRL KC M ++
Sbjct: 84 TCRGNRN----CPIDQHHRNQCQDCRLKKCLKMGMRRE 117
>gi|16905398|gb|AAL31315.1|L26957_1 orphan receptor [Mus musculus]
gi|1049076|gb|AAC29502.1| TR2 [Mus musculus]
Length = 590
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 9/98 (9%)
Query: 20 MSRPDGRDVTSASRD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
+S P + +T S D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY
Sbjct: 77 LSAPHLQLLTENSPDQGPNKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVY 135
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+C+ D C I+K HRN+C+ CRL +C M +D
Sbjct: 136 SCRGSKD----CVINKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|405965497|gb|EKC30866.1| Retinoic acid receptor beta [Crassostrea gigas]
Length = 501
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RS+ +N YTC + CPI+K RN+C+
Sbjct: 111 PCVVCSDKSSGYHYGVSSCEGCKGFFRRSVQKNMQYTCHKDKN----CPINKVTRNRCQY 166
Query: 100 CRLNKCFMSAMNKD 113
CRL KC+ + M+K+
Sbjct: 167 CRLQKCYATGMSKE 180
>gi|378705844|gb|AFC34774.1| RORgamma2 [Ctenopharyngodon idella]
Length = 486
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N +Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|1890579|emb|CAA72244.1| orphan receptor [Mus musculus]
Length = 590
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 9/98 (9%)
Query: 20 MSRPDGRDVTSASRD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
+S P + +T S D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY
Sbjct: 77 LSAPHLQLLTENSPDQGPNKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVY 135
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+C+ D C I+K HRN+C+ CRL +C M +D
Sbjct: 136 SCRGSKD----CVINKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|343960182|dbj|BAK63945.1| nuclear receptor ROR-alpha [Pan troglodytes]
Length = 493
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 41 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 96
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 97 HCRLQKCLAVGMSRD 111
>gi|189532981|ref|XP_690743.3| PREDICTED: nuclear receptor ROR-beta [Danio rerio]
Length = 480
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N +Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|354478543|ref|XP_003501474.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Cricetulus griseus]
gi|344252291|gb|EGW08395.1| Nuclear receptor subfamily 2 group C member 1 [Cricetulus griseus]
Length = 590
Score = 94.7 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 95 NKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 149
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 150 RNRCQYCRLQRCIAFGMKQD 169
>gi|338721159|ref|XP_003364318.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Equus
caballus]
Length = 485
Score = 94.7 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|47223192|emb|CAG11327.1| unnamed protein product [Tetraodon nigroviridis]
Length = 577
Score = 94.7 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 5/82 (6%)
Query: 32 SRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 91
SR +L++ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C+++ D C I+K
Sbjct: 88 SRPQLVEF-CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSKED----CIINK 142
Query: 92 THRNQCRACRLNKCFMSAMNKD 113
HRN+C+ CRL KC M +
Sbjct: 143 HHRNRCQFCRLRKCLKMGMKTE 164
>gi|332840360|ref|XP_001137621.2| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 1
[Pan troglodytes]
gi|397473630|ref|XP_003808309.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 2
[Pan paniscus]
gi|410209720|gb|JAA02079.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410255878|gb|JAA15906.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410298356|gb|JAA27778.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410342159|gb|JAA40026.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
Length = 604
Score = 94.7 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYACRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|68132034|gb|AAY85283.1| RORgamma-B [Danio rerio]
Length = 480
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N +Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRN----CLIDRTNRNRCQ 63
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 64 HCRLQKCLALGMSRD 78
>gi|147899545|ref|NP_001084198.1| nuclear receptor subfamily 2 group C member 1-A [Xenopus laevis]
gi|82201033|sp|Q6GN21.1|N2C1A_XENLA RecName: Full=Nuclear receptor subfamily 2 group C member 1-A;
AltName: Full=Developmental orphan receptor 2-A;
Short=DOR2-A; Short=xDOR2-A; AltName: Full=Orphan
nuclear receptor TR2-A; AltName: Full=Testicular
receptor 2-A
gi|49118996|gb|AAH73700.1| DOR2 protein [Xenopus laevis]
Length = 637
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG +C+GC GFFKRSI +N VYTC+ D C I+K +RN+C+ C
Sbjct: 152 CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKD----CVINKHYRNRCQYC 207
Query: 101 RLNKCFMSAMNKD 113
RL +C M +D
Sbjct: 208 RLQRCMSLGMKQD 220
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 38 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CVIDKRQRNRCQYC 93
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 94 RYQKCLAMGMKRE 106
>gi|224088946|ref|XP_002190992.1| PREDICTED: nuclear receptor ROR-beta [Taeniopygia guttata]
Length = 458
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|45384158|ref|NP_990424.1| nuclear receptor ROR-beta [Gallus gallus]
gi|1619285|emb|CAA69928.1| nuclear orphan receptor ROR-beta [Gallus gallus]
Length = 459
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|72013357|ref|XP_784447.1| PREDICTED: retinoic acid receptor RXR-gamma-like
[Strongylocentrotus purpuratus]
Length = 448
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 10/109 (9%)
Query: 5 VGNCRQIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGF 64
VG+ IP S PD + R+R PC VCGDR +G HY ++SC+GC GF
Sbjct: 39 VGSTSSIP------LASNPDAGGIGDRDRER----PCLVCGDRGTGCHYSVFSCEGCKGF 88
Query: 65 FKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
FKR++ + +Y+C+ + +++G C I+KT RN C+ CR KC + M D
Sbjct: 89 FKRTVQKQLLYSCRGRSNMEGCCEINKTSRNSCQFCRFQKCLTAGMKTD 137
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 276 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 331
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 332 RYQKCLAMGMKRE 344
>gi|216409724|dbj|BAH02299.1| nuclear receptor subfamily 2, group C, member 2 [Homo sapiens]
Length = 596
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 40/82 (48%), Positives = 56/82 (68%), Gaps = 5/82 (6%)
Query: 29 TSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
T A R ++++ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++ D C
Sbjct: 106 TDAQRPQVVEY-CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQD----CI 160
Query: 89 IDKTHRNQCRACRLNKCFMSAM 110
I+K HRN+C+ CRL KC M
Sbjct: 161 INKHHRNRCQFCRLKKCLEMGM 182
>gi|21310109|gb|AAM46150.1|AF378828_1 nuclear orphan receptor TR2/4 [Branchiostoma floridae]
Length = 511
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
M P+ T S D C VCGD++SG+HYG SC+GC GFFKRSI +N Y C++
Sbjct: 1 MMSPNSVLFTPGSGDTKPQELCVVCGDKASGRHYGAISCEGCKGFFKRSIRKNLGYVCRS 60
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+ CPI+K HRN+C+ CRL KC M +
Sbjct: 61 SKE----CPINKHHRNRCQYCRLQKCLSVGMRSE 90
>gi|449266386|gb|EMC77439.1| Nuclear receptor ROR-alpha, partial [Columba livia]
Length = 468
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 71
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 72 HCRLQKCLAVGMSRD 86
>gi|338721157|ref|XP_003364317.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Equus
caballus]
Length = 497
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|148709623|gb|EDL41569.1| RAR-related orphan receptor beta, isoform CRA_a [Mus musculus]
Length = 474
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 23 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 78
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 79 HCRLQKCLALGMSRD 93
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 104 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 159
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 160 RYQKCLAMGMKRE 172
>gi|297263280|ref|XP_002798778.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
isoform 2 [Macaca mulatta]
Length = 483
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|189491766|ref|NP_001120834.1| nuclear receptor subfamily 2 group C member 1 isoform c [Homo
sapiens]
gi|338486|gb|AAA36650.1| steroid receptor TR2 [Homo sapiens]
gi|119617923|gb|EAW97517.1| nuclear receptor subfamily 2, group C, member 1, isoform CRA_a
[Homo sapiens]
Length = 483
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 107 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 161
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 162 RNRCQYCRLQRCIAFGMKQD 181
>gi|363738759|ref|XP_414462.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Gallus
gallus]
Length = 629
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 129 SASVERLLGKADVQRAQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 188
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 189 NQD----CIINKHHRNRCQFCRLKKCLEMGM 215
>gi|326928210|ref|XP_003210274.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Meleagris gallopavo]
Length = 592
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 92 SASVERLLGKADVQRAQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 151
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 152 NQD----CIINKHHRNRCQFCRLKKCLEMGM 178
>gi|281344010|gb|EFB19594.1| hypothetical protein PANDA_014042 [Ailuropoda melanoleuca]
Length = 459
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 63
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 64 HCRLQKCLALGMSRD 78
>gi|118344280|ref|NP_001071962.1| nuclear receptor [Ciona intestinalis]
gi|70571053|dbj|BAE06670.1| nuclear receptor [Ciona intestinalis]
Length = 597
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 5/97 (5%)
Query: 18 YFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY-T 76
+F + R+ +S S LLD+PCKVCGD+SSG HYG+YSC+GC GFF+R+IH+ Y +
Sbjct: 24 HFKQKKKPREKSSVSTVELLDMPCKVCGDKSSGVHYGVYSCEGCKGFFRRTIHQKIKYRS 83
Query: 77 CKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C L C I K +RN+C+ CR KC M+KD
Sbjct: 84 CI----LDRTCSITKINRNRCQTCRFMKCLYVGMSKD 116
>gi|118150918|ref|NP_001071372.1| nuclear receptor subfamily 2 group C member 1 [Bos taurus]
gi|226733406|sp|A0JNE3.1|NR2C1_BOVIN RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|117306695|gb|AAI26644.1| Nuclear receptor subfamily 2, group C, member 1 [Bos taurus]
Length = 608
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGEVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|440899103|gb|ELR50468.1| Nuclear receptor ROR-alpha, partial [Bos grunniens mutus]
Length = 468
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 71
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 72 HCRLQKCLAVGMSRD 86
>gi|301775172|ref|XP_002923008.1| PREDICTED: nuclear receptor ROR-alpha-like [Ailuropoda melanoleuca]
Length = 509
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 57 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 112
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 113 HCRLQKCLAVGMSRD 127
>gi|344293479|ref|XP_003418450.1| PREDICTED: nuclear receptor ROR-alpha-like [Loxodonta africana]
Length = 496
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 44 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 99
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 100 HCRLQKCLAVGMSRD 114
>gi|224062295|ref|XP_002195185.1| PREDICTED: nuclear receptor ROR-alpha [Taeniopygia guttata]
Length = 524
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 72 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 127
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 128 HCRLQKCLAVGMSRD 142
>gi|440904694|gb|ELR55168.1| Retinoic acid receptor RXR-alpha, partial [Bos grunniens mutus]
Length = 485
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 147 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 202
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 203 RYQKCLAMGMKRE 215
>gi|297263282|ref|XP_001107297.2| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
isoform 1 [Macaca mulatta]
Length = 468
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|281340400|gb|EFB15984.1| hypothetical protein PANDA_007909 [Ailuropoda melanoleuca]
Length = 587
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 90 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 144
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 145 RNRCQYCRLQRCIAFGMRQD 164
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 162 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 217
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 218 RYQKCLAMGMKRE 230
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 59 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 114
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 115 RYQKCLAMGMKRE 127
>gi|348241|gb|AAA02963.1| transcription factor [Homo sapiens]
Length = 468
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 71
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 72 HCRLQKCLAVGMSRD 86
>gi|395516672|ref|XP_003762511.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Sarcophilus harrisii]
Length = 629
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 129 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 188
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 189 NQD----CIINKHHRNRCQFCRLKKCLEMGM 215
>gi|348555499|ref|XP_003463561.1| PREDICTED: nuclear receptor ROR-alpha [Cavia porcellus]
Length = 478
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 26 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 81
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 82 HCRLQKCLAVGMSRD 96
>gi|328496564|gb|AEB21388.1| COUP-TF protein [Hydractinia echinata]
Length = 339
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C VCGD+SSGKHYG+Y+C+GC FFKRSI RN Y C++ CP+D+ HRNQC+
Sbjct: 7 VDCAVCGDKSSGKHYGVYTCEGCKSFFKRSIRRNLEYQCRSNKK----CPVDQHHRNQCQ 62
Query: 99 ACRLNKCFMSAMNKD 113
CRL KCF M ++
Sbjct: 63 HCRLKKCFKVGMRRE 77
>gi|431898686|gb|ELK07066.1| Nuclear receptor ROR-beta, partial [Pteropus alecto]
Length = 460
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 9 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 64
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 65 HCRLQKCLALGMSRD 79
>gi|758420|gb|AAA64751.1| ROR gamma [Homo sapiens]
Length = 560
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 85 HCRLQKCLALGMSRD 99
>gi|410978155|ref|XP_003995462.1| PREDICTED: nuclear receptor ROR-beta [Felis catus]
Length = 459
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|410961130|ref|XP_003987138.1| PREDICTED: nuclear receptor ROR-alpha [Felis catus]
Length = 493
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 41 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 96
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 97 HCRLQKCLAVGMSRD 111
>gi|363743762|ref|XP_003642912.1| PREDICTED: nuclear receptor ROR-beta-like [Gallus gallus]
Length = 540
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Query: 23 PDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD 82
P+ + S+ ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q +
Sbjct: 67 PNEVTIVSSITAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCSRQRN 126
Query: 83 LKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C ID+T+RN+C+ CRL KC M++D
Sbjct: 127 ----CLIDRTNRNRCQHCRLQKCLALGMSRD 153
>gi|260835009|ref|XP_002612502.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
gi|229297879|gb|EEN68511.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
Length = 486
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 4/103 (3%)
Query: 11 IPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIH 70
+P P M + D T + + C +CGDR++GKHYG SCDGC GFF+RS+
Sbjct: 23 LPTIKPPVQMVKQPQADFTLGAETDVTLSQCAICGDRATGKHYGAASCDGCKGFFRRSVR 82
Query: 71 RNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+N VYTC+ C +DK RNQCR CRL KCF + M K+
Sbjct: 83 KNHVYTCR----FNRMCVVDKDKRNQCRYCRLKKCFRAGMKKE 121
>gi|1619294|emb|CAA69929.1| nuclear orphan receptor ROR-beta [Homo sapiens]
Length = 459
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|400974222|ref|NP_001257887.1| nuclear receptor ROR-beta [Rattus norvegicus]
gi|109463688|ref|XP_001079696.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Rattus norvegicus]
Length = 459
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|112821700|ref|NP_001036819.1| nuclear receptor ROR-beta isoform 1 [Mus musculus]
gi|110589523|gb|ABG77269.1| retinoid-related orphan receptor beta 1 isoform [Mus musculus]
Length = 459
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|216409698|dbj|BAH02286.1| retinoid-related orphan receptor beta [Homo sapiens]
Length = 459
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|19743907|ref|NP_008845.2| nuclear receptor ROR-beta [Homo sapiens]
gi|386781838|ref|NP_001247680.1| nuclear receptor ROR-beta [Macaca mulatta]
gi|114625038|ref|XP_001144112.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Pan troglodytes]
gi|397503245|ref|XP_003822240.1| PREDICTED: nuclear receptor ROR-beta [Pan paniscus]
gi|402897652|ref|XP_003911863.1| PREDICTED: nuclear receptor ROR-beta [Papio anubis]
gi|426362023|ref|XP_004048182.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Gorilla gorilla
gorilla]
gi|62022574|gb|AAH51830.1| RAR-related orphan receptor B [Homo sapiens]
gi|62739507|gb|AAH93774.1| RAR-related orphan receptor B [Homo sapiens]
gi|62739746|gb|AAH93772.1| RAR-related orphan receptor B [Homo sapiens]
gi|119582956|gb|EAW62552.1| RAR-related orphan receptor B [Homo sapiens]
gi|167773493|gb|ABZ92181.1| RAR-related orphan receptor B [synthetic construct]
gi|189066675|dbj|BAG36222.1| unnamed protein product [Homo sapiens]
gi|307685949|dbj|BAJ20905.1| RAR-related orphan receptor B [synthetic construct]
gi|325495575|gb|ADZ17393.1| RAR-related orphan receptor beta [Homo sapiens]
gi|380783487|gb|AFE63619.1| nuclear receptor ROR-beta [Macaca mulatta]
Length = 459
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|21955144|ref|NP_665723.1| nuclear receptor subfamily 2 group C member 1 [Rattus norvegicus]
gi|81902145|sp|Q8VIJ4.1|NR2C1_RAT RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2
gi|16905400|gb|AAL31316.1|L26398_1 orphan receptor [Rattus norvegicus]
gi|38197570|gb|AAH61822.1| Nr2c1 protein [Rattus norvegicus]
gi|149067156|gb|EDM16889.1| pregnancy specific beta-1-glycoprotein 4, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 9/98 (9%)
Query: 20 MSRPDGRDVTSASRD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
+S P + +T S D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY
Sbjct: 77 LSTPHLQLLTENSPDQGPNKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVY 135
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+C+ D C I+K HRN+C+ CRL +C M +D
Sbjct: 136 SCRGSKD----CIINKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|343958546|dbj|BAK63128.1| orphan nuclear receptor TR2 [Pan troglodytes]
Length = 604
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYACRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|397515466|ref|XP_003827972.1| PREDICTED: nuclear receptor ROR-alpha isoform 4 [Pan paniscus]
Length = 525
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 73 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 128
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 129 HCRLQKCLAVGMSRD 143
>gi|354503278|ref|XP_003513708.1| PREDICTED: nuclear receptor ROR-alpha, partial [Cricetulus griseus]
Length = 473
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 21 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 76
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 77 HCRLQKCLAVGMSRD 91
>gi|224094384|ref|XP_002188160.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 2
[Taeniopygia guttata]
Length = 563
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 67 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGTKD----CVINKHH 121
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 122 RNRCQYCRLQRCIAFGMKQD 141
>gi|216409722|dbj|BAH02298.1| nuclear receptor subfamily 2, group C isoform [Homo sapiens]
Length = 434
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 107 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 161
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 162 RNRCQYCRLQRCIAFGMKQD 181
>gi|118344438|ref|NP_001072044.1| nuclear receptor [Ciona intestinalis]
gi|70571388|dbj|BAE06736.1| nuclear receptor [Ciona intestinalis]
Length = 692
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SG+HYG SC+GC GFFKRS+ + YTC+ D C ++KTHRN+C+ C
Sbjct: 206 CVVCGDRASGRHYGAKSCEGCKGFFKRSVRKKLTYTCRGSRD----CSVNKTHRNRCQYC 261
Query: 101 RLNKCFMSAMNKD 113
R KC + M D
Sbjct: 262 RFQKCVLMGMKSD 274
>gi|118344170|ref|NP_001071910.1| nuclear receptor [Ciona intestinalis]
gi|92081500|dbj|BAE93297.1| nuclear receptor [Ciona intestinalis]
Length = 692
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SG+HYG SC+GC GFFKRS+ + YTC+ D C ++KTHRN+C+ C
Sbjct: 206 CVVCGDRASGRHYGAKSCEGCKGFFKRSVRKKLTYTCRGSRD----CSVNKTHRNRCQYC 261
Query: 101 RLNKCFMSAMNKD 113
R KC + M D
Sbjct: 262 RFQKCVLMGMKSD 274
>gi|443688970|gb|ELT91492.1| hypothetical protein CAPTEDRAFT_53417, partial [Capitella teleta]
Length = 390
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D RNQC+AC
Sbjct: 15 CLVCGDRASGKHYGVQSCDGCRGFFKRSIRRNLDYVCKE----NGQCVVDVARRNQCQAC 70
Query: 101 RLNKCFMSAMNKD 113
R KC MN+D
Sbjct: 71 RFKKCLQVNMNRD 83
>gi|241609879|ref|XP_002406854.1| retinoic acid receptor gamma, putative [Ixodes scapularis]
gi|215502725|gb|EEC12219.1| retinoic acid receptor gamma, putative [Ixodes scapularis]
Length = 75
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
+ +PCKVCGDRS GKHYG+Y CDGCS FFKRSI R VYTC A G+C IDK RN
Sbjct: 2 VPVPCKVCGDRSYGKHYGVYCCDGCSCFFKRSIRRGIVYTCIAG---NGNCVIDKARRNW 58
Query: 97 CRACRLNKCFMSAMNKD 113
C CRL KCF +MN++
Sbjct: 59 CPYCRLQKCFGVSMNRN 75
>gi|301778497|ref|XP_002924666.1| PREDICTED: nuclear receptor ROR-beta-like [Ailuropoda melanoleuca]
Length = 478
Score = 94.4 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 27 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 82
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 83 HCRLQKCLALGMSRD 97
>gi|296189722|ref|XP_002742890.1| PREDICTED: nuclear receptor ROR-beta [Callithrix jacchus]
Length = 459
Score = 94.4 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|395746808|ref|XP_003778514.1| PREDICTED: nuclear receptor ROR-alpha isoform 4 [Pongo abelii]
Length = 525
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 73 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 128
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 129 HCRLQKCLAVGMSRD 143
>gi|344271210|ref|XP_003407434.1| PREDICTED: nuclear receptor ROR-beta, partial [Loxodonta africana]
Length = 458
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 7 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 62
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 63 HCRLQKCLALGMSRD 77
>gi|73808084|ref|NP_001027458.1| nuclear receptor subfamily 2 group C member 1 isoform b [Homo
sapiens]
gi|339889|gb|AAA36762.1| steroid receptor TR2-9 [Homo sapiens]
gi|25304019|gb|AAH40141.1| Nuclear receptor subfamily 2, group C, member 1 [Homo sapiens]
gi|119617924|gb|EAW97518.1| nuclear receptor subfamily 2, group C, member 1, isoform CRA_b
[Homo sapiens]
gi|325463583|gb|ADZ15562.1| nuclear receptor subfamily 2, group C, member 1 [synthetic
construct]
gi|381146195|gb|AFF59488.1| testicular nuclear receptor 2 variant 2 [Homo sapiens]
Length = 467
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 107 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 161
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 162 RNRCQYCRLQRCIAFGMKQD 181
>gi|193211376|ref|NP_001123209.1| nuclear receptor ROR-beta [Ovis aries]
gi|152940827|gb|ABS44878.1| retinoid-related orphan receptor beta [Ovis aries]
Length = 459
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|291383385|ref|XP_002708255.1| PREDICTED: RAR-related orphan receptor B [Oryctolagus cuniculus]
Length = 459
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|94467591|dbj|BAE93688.1| RAR related orphan receptor beta [Mus musculus]
Length = 459
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|426331483|ref|XP_004026710.1| PREDICTED: nuclear receptor ROR-gamma isoform 4 [Gorilla gorilla
gorilla]
Length = 572
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 83 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 138
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 139 HCRLQKCLALGMSRD 153
>gi|300798568|ref|NP_001179587.1| nuclear receptor ROR-beta [Bos taurus]
gi|296484753|tpg|DAA26868.1| TPA: RAR-related orphan receptor B [Bos taurus]
Length = 459
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|73946789|ref|XP_541280.2| PREDICTED: nuclear receptor ROR-beta [Canis lupus familiaris]
Length = 459
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|395819239|ref|XP_003783005.1| PREDICTED: nuclear receptor ROR-beta [Otolemur garnettii]
Length = 459
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|332236552|ref|XP_003267464.1| PREDICTED: nuclear receptor ROR-beta [Nomascus leucogenys]
Length = 459
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|194224754|ref|XP_001488198.2| PREDICTED: nuclear receptor ROR-beta [Equus caballus]
Length = 459
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|1173533|gb|AAC53253.1| orphan receptor [Mus musculus]
gi|1537010|gb|AAC52787.1| orphan receptor [Mus musculus]
Length = 590
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 9/98 (9%)
Query: 20 MSRPDGRDVTSASRD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
+S P + +T S D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY
Sbjct: 77 LSAPHLQLLTEKSPDQGPNKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVY 135
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+C+ D C ++K HRN+C+ CRL +C M +D
Sbjct: 136 SCRGSKD----CVMNKHHRNRCQYCRLQRCIAFGMKQD 169
>gi|301621480|ref|XP_002940077.1| PREDICTED: nuclear receptor ROR-beta-like [Xenopus (Silurana)
tropicalis]
Length = 458
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 38 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 93
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 94 RYQKCLAMGMKRE 106
>gi|397492738|ref|XP_003817277.1| PREDICTED: nuclear receptor ROR-gamma isoform 4 [Pan paniscus]
Length = 572
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 83 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 138
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 139 HCRLQKCLALGMSRD 153
>gi|355707897|gb|AES03099.1| nuclear receptor subfamily 2, group F, member 6 [Mustela putorius
furo]
Length = 133
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 64/104 (61%), Gaps = 7/104 (6%)
Query: 13 PRYPQYFMSRPDG--RDVTSASRDRL-LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSI 69
PR + + P G D +R L + C VCGD+SSGKHYG+++C+GC FFKRSI
Sbjct: 7 PRAAEEDSASPPGAASDAEPGDEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSI 66
Query: 70 HRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
RN YTC++ D C ID+ HRNQC+ CRL KCF M K+
Sbjct: 67 RRNLSYTCRSNRD----CQIDQHHRNQCQYCRLKKCFRVGMRKE 106
>gi|355745653|gb|EHH50278.1| hypothetical protein EGM_01084 [Macaca fascicularis]
Length = 572
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 83 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 138
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 139 HCRLQKCLALGMSRD 153
>gi|332810309|ref|XP_003308439.1| PREDICTED: nuclear receptor ROR-gamma isoform 4 [Pan troglodytes]
Length = 572
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 83 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 138
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 139 HCRLQKCLALGMSRD 153
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 75 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 130
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 131 YCRLKKCLKVGMRRE 145
>gi|197102124|ref|NP_001125682.1| nuclear receptor ROR-gamma [Pongo abelii]
gi|75061866|sp|Q5RAP4.1|RORG_PONAB RecName: Full=Nuclear receptor ROR-gamma; AltName: Full=Nuclear
receptor RZR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group F member 3; AltName:
Full=Retinoid-related orphan receptor-gamma
gi|55728856|emb|CAH91166.1| hypothetical protein [Pongo abelii]
Length = 518
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 85 HCRLQKCLALGMSRD 99
>gi|326917784|ref|XP_003205176.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Meleagris
gallopavo]
Length = 453
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RSI +N VYTC+ C +DK RNQCR C
Sbjct: 58 CAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYTCR----FSRQCVVDKDKRNQCRYC 113
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 114 RLKKCFRAGMKKE 126
>gi|440912616|gb|ELR62171.1| Nuclear receptor ROR-beta, partial [Bos grunniens mutus]
Length = 467
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 71
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 72 HCRLQKCLALGMSRD 86
>gi|37194675|gb|AAH58269.1| Rorb protein, partial [Mus musculus]
Length = 462
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 11 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 66
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 67 HCRLQKCLALGMSRD 81
>gi|293344662|ref|XP_002725756.1| PREDICTED: nuclear receptor ROR-beta isoform 2 [Rattus norvegicus]
gi|293356460|ref|XP_002728915.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Rattus norvegicus]
Length = 470
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 19 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 74
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 75 HCRLQKCLALGMSRD 89
>gi|194391110|dbj|BAG60673.1| unnamed protein product [Homo sapiens]
Length = 572
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 83 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 138
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 139 HCRLQKCLALGMSRD 153
>gi|149062564|gb|EDM12987.1| RAR-related orphan receptor beta (predicted) [Rattus norvegicus]
Length = 452
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 19 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 74
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 75 HCRLQKCLALGMSRD 89
>gi|124028632|sp|P45446.3|RORB_RAT RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
Length = 470
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 19 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 74
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 75 HCRLQKCLALGMSRD 89
>gi|114625040|ref|XP_528326.2| PREDICTED: nuclear receptor ROR-beta isoform 2 [Pan troglodytes]
gi|403256470|ref|XP_003920899.1| PREDICTED: nuclear receptor ROR-beta [Saimiri boliviensis
boliviensis]
gi|426362025|ref|XP_004048183.1| PREDICTED: nuclear receptor ROR-beta isoform 2 [Gorilla gorilla
gorilla]
gi|124028630|sp|Q92753.3|RORB_HUMAN RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
gi|355567837|gb|EHH24178.1| Retinoid-related orphan receptor-beta [Macaca mulatta]
gi|355753418|gb|EHH57464.1| Retinoid-related orphan receptor-beta [Macaca fascicularis]
Length = 470
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 19 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 74
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 75 HCRLQKCLALGMSRD 89
>gi|426379299|ref|XP_004056338.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Gorilla gorilla
gorilla]
Length = 525
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 73 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 128
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 129 HCRLQKCLAVGMSRD 143
>gi|351698410|gb|EHB01329.1| Nuclear receptor ROR-alpha [Heterocephalus glaber]
Length = 571
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 120 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 175
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 176 HCRLQKCLAVGMSRD 190
>gi|119597999|gb|EAW77593.1| RAR-related orphan receptor A, isoform CRA_a [Homo sapiens]
Length = 467
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 15 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 70
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 71 HCRLQKCLAVGMSRD 85
>gi|432874724|ref|XP_004072561.1| PREDICTED: nuclear receptor ROR-beta-like [Oryzias latipes]
Length = 472
Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|426331479|ref|XP_004026708.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Gorilla gorilla
gorilla]
Length = 518
Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 85 HCRLQKCLALGMSRD 99
>gi|297279987|ref|XP_002801824.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 1 [Macaca
mulatta]
gi|355558432|gb|EHH15212.1| hypothetical protein EGK_01272 [Macaca mulatta]
Length = 572
Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 83 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 138
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 139 HCRLQKCLALGMSRD 153
>gi|332840362|ref|XP_003313976.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 2
[Pan troglodytes]
gi|397473628|ref|XP_003808308.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 1
[Pan paniscus]
Length = 484
Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYACRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|339238869|ref|XP_003380989.1| zinc finger protein [Trichinella spiralis]
gi|316976049|gb|EFV59394.1| zinc finger protein [Trichinella spiralis]
Length = 562
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C+VCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK+ D C +D RNQC+AC
Sbjct: 114 CQVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLTYQCKSNDD----CVVDVARRNQCQAC 169
Query: 101 RLNKCFMSAMNK 112
RL KC MN+
Sbjct: 170 RLKKCLQVKMNR 181
>gi|313233694|emb|CBY09864.1| unnamed protein product [Oikopleura dioica]
Length = 553
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C+VCGDR+SG+HYG+ SC+GC GFFKRSI + YTC+ D CP+ K RN+C+AC
Sbjct: 94 CEVCGDRASGRHYGVKSCEGCKGFFKRSIRKKLNYTCRWNAD----CPVTKLQRNRCQAC 149
Query: 101 RLNKCFMSAMNKD 113
R KC M D
Sbjct: 150 RFFKCVSVGMRAD 162
>gi|912822|gb|AAB33314.1| type II zinc finger DNA binding transcription factor [Mus sp.]
gi|148666900|gb|EDK99316.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a [Mus
musculus]
Length = 629
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 129 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 188
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 189 SQD----CIINKHHRNRCQFCRLKKCLEMGM 215
>gi|403302650|ref|XP_003941967.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Saimiri
boliviensis boliviensis]
Length = 518
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 85 HCRLQKCLALGMSRD 99
>gi|397511829|ref|XP_003826267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Pan paniscus]
Length = 648
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 148 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 207
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 208 NQD----CIINKHHRNRCQFCRLKKCLEMGM 234
>gi|348509753|ref|XP_003442411.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Oreochromis
niloticus]
Length = 409
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +C DR++GKHYG SCDGC GFF+RSI N Y+C+ C +DK RNQCR C
Sbjct: 56 CSICADRATGKHYGAPSCDGCKGFFRRSIRNNHTYSCR----FDRQCIVDKDKRNQCRYC 111
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 112 RLRKCFKAGMRKE 124
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 62/102 (60%), Gaps = 7/102 (6%)
Query: 12 PPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHR 71
PP P + G+ + S+ I C VCGD+SSGKHYG ++C+GC FFKRS+ R
Sbjct: 53 PPSTPGTAGDKGQGQPGSGQSQQH---IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRR 109
Query: 72 NRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
N YTC+A + CPID+ HRNQC+ CRL KC M ++
Sbjct: 110 NLTYTCRANRN----CPIDQHHRNQCQYCRLKKCLKVGMRRE 147
>gi|297263119|ref|XP_002798750.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Macaca mulatta]
Length = 648
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 148 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 207
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 208 NQD----CIINKHHRNRCQFCRLKKCLEMGM 234
>gi|47229684|emb|CAG06880.1| unnamed protein product [Tetraodon nigroviridis]
Length = 621
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 63
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 64 HCRLQKCLALGMSRD 78
>gi|351714484|gb|EHB17403.1| Nuclear receptor ROR-beta [Heterocephalus glaber]
Length = 510
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 19 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 74
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 75 HCRLQKCLALGMSRD 89
>gi|348572976|ref|XP_003472268.1| PREDICTED: nuclear receptor ROR-beta-like [Cavia porcellus]
Length = 470
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 19 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 74
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 75 HCRLQKCLALGMSRD 89
>gi|350579326|ref|XP_003480585.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor ROR-beta-like [Sus
scrofa]
Length = 524
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 19 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 74
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 75 HCRLQKCLALGMSRD 89
>gi|112821692|ref|NP_666207.3| nuclear receptor ROR-beta isoform 2 [Mus musculus]
gi|124028631|sp|Q8R1B8.3|RORB_MOUSE RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
gi|110589525|gb|ABG77270.1| retinoid-related orphan receptor beta 2 isoform [Mus musculus]
Length = 470
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 19 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 74
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 75 HCRLQKCLALGMSRD 89
>gi|395514963|ref|XP_003761678.1| PREDICTED: nuclear receptor ROR-beta [Sarcophilus harrisii]
Length = 487
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 36 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 91
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 92 HCRLQKCLALGMSRD 106
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 62/102 (60%), Gaps = 7/102 (6%)
Query: 12 PPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHR 71
PP P + G+ + S+ I C VCGD+SSGKHYG ++C+GC FFKRS+ R
Sbjct: 53 PPSTPGTAGDKGQGQPGSGQSQQH---IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRR 109
Query: 72 NRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
N YTC+A + CPID+ HRNQC+ CRL KC M ++
Sbjct: 110 NLTYTCRANRN----CPIDQHHRNQCQYCRLKKCLKVGMRRE 147
>gi|170588789|ref|XP_001899156.1| Nuclear hormone receptor family member nhr-41 [Brugia malayi]
gi|158593369|gb|EDP31964.1| Nuclear hormone receptor family member nhr-41, putative [Brugia
malayi]
Length = 526
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 5/87 (5%)
Query: 27 DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 86
+ +SA RD +++ C VCGD++SG+HYG SC+GC GFFKRSI + Y C+ D
Sbjct: 30 NASSAVRDMCVEL-CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKQIGYVCRGTKD---- 84
Query: 87 CPIDKTHRNQCRACRLNKCFMSAMNKD 113
CP+ K HRN+C+ CRL KC M +
Sbjct: 85 CPVTKFHRNRCQYCRLRKCLTMGMRSE 111
>gi|441665232|ref|XP_003265071.2| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2 [Nomascus leucogenys]
Length = 648
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 148 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 207
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 208 NQD----CIINKHHRNRCQFCRLKKCLEMGM 234
>gi|355707882|gb|AES03094.1| nuclear receptor subfamily 2, group C, member 1 [Mustela putorius
furo]
Length = 451
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMRQD 182
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|402887043|ref|XP_003906915.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Papio anubis]
gi|403268297|ref|XP_003926214.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Saimiri boliviensis boliviensis]
Length = 648
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 148 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 207
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 208 NQD----CIINKHHRNRCQFCRLKKCLEMGM 234
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 74 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 129
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 130 YCRLKKCLKVGMRRE 144
>gi|426331481|ref|XP_004026709.1| PREDICTED: nuclear receptor ROR-gamma isoform 3 [Gorilla gorilla
gorilla]
Length = 506
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 85 HCRLQKCLALGMSRD 99
>gi|297279991|ref|XP_002801826.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 3 [Macaca
mulatta]
Length = 506
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 85 HCRLQKCLALGMSRD 99
>gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 410
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 74 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 129
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 130 YCRLKKCLKVGMRRE 144
>gi|259013249|ref|NP_001158369.1| transcription factor COUP1 [Saccoglossus kowalevskii]
gi|196123801|gb|ACG70189.1| COUP protein [Saccoglossus kowalevskii]
Length = 435
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 100 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 155
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 156 YCRLKKCLKMGMRRE 170
>gi|154147672|ref|NP_001093677.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus (Silurana)
tropicalis]
gi|138519913|gb|AAI35590.1| nr2f1 protein [Xenopus (Silurana) tropicalis]
Length = 410
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 72 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 127
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 128 YCRLKKCLKVGMRRE 142
>gi|449274063|gb|EMC83368.1| Nuclear receptor subfamily 2 group C member 2 [Columba livia]
Length = 596
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 NQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 72 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 127
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 128 YCRLKKCLKVGMRRE 142
>gi|301767868|ref|XP_002919364.1| PREDICTED: nuclear receptor ROR-gamma-like [Ailuropoda melanoleuca]
Length = 529
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS + VY+C Q + CPID+T RN+C+
Sbjct: 40 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCHVVYSCTRQQN----CPIDRTSRNRCQ 95
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 96 HCRLQKCLALGMSRD 110
>gi|114585547|ref|XP_001158643.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 6
[Pan troglodytes]
gi|410222744|gb|JAA08591.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410261218|gb|JAA18575.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410287872|gb|JAA22536.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410349801|gb|JAA41504.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
Length = 615
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 115 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 174
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 175 NQD----CIINKHHRNRCQFCRLKKCLEMGM 201
>gi|36950991|ref|NP_003289.2| nuclear receptor subfamily 2 group C member 2 [Homo sapiens]
gi|296225932|ref|XP_002758706.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Callithrix jacchus]
gi|119584617|gb|EAW64213.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|119584618|gb|EAW64214.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|168278006|dbj|BAG10981.1| orphan nuclear receptor TR4 [synthetic construct]
gi|325588346|gb|ADZ31973.1| testicular nuclear receptor 4 [Homo sapiens]
gi|355564520|gb|EHH21020.1| hypothetical protein EGK_03993 [Macaca mulatta]
gi|380816092|gb|AFE79920.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
gi|383421225|gb|AFH33826.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
Length = 615
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 115 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 174
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 175 NQD----CIINKHHRNRCQFCRLKKCLEMGM 201
>gi|281346029|gb|EFB21613.1| hypothetical protein PANDA_017952 [Ailuropoda melanoleuca]
Length = 358
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 19 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 74
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 75 YCRLKKCLKVGMRRE 89
>gi|344254648|gb|EGW10752.1| Nuclear receptor ROR-gamma [Cricetulus griseus]
Length = 341
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 17 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRT 72
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 73 SRNRCQHCRLQKCLALGMSRD 93
>gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid receptor-mediated transcriptional
activation negative regulator [Xenopus, stage 17
embryos, Peptide, 405 aa]
Length = 405
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 68 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 123
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 124 YCRLKKCLKVGMRRE 138
>gi|443702947|gb|ELU00770.1| hypothetical protein CAPTEDRAFT_224222 [Capitella teleta]
Length = 747
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SG+HYG+ SC+GC GFFKRSI + Y C+ D CPI K +RN+C+ C
Sbjct: 199 CIVCGDRASGRHYGVISCEGCKGFFKRSIRKQLGYACRGNKD----CPITKHYRNRCQYC 254
Query: 101 RLNKCFMSAMNKD 113
RL KC M +
Sbjct: 255 RLQKCLAVGMRSE 267
>gi|332840364|ref|XP_003313977.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 3
[Pan troglodytes]
Length = 468
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYACRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>gi|301616152|ref|XP_002937524.1| PREDICTED: nuclear receptor ROR-alpha-like [Xenopus (Silurana)
tropicalis]
Length = 464
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 71
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 72 HCRLQKCLAVGMSRD 86
>gi|166796001|ref|NP_001107703.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus (Silurana)
tropicalis]
gi|163916021|gb|AAI57200.1| nr2f2 protein [Xenopus (Silurana) tropicalis]
Length = 408
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 71 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 126
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 127 YCRLKKCLKVGMRRE 141
>gi|147901133|ref|NP_001080488.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus laevis]
gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus laevis]
Length = 405
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 68 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 123
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 124 YCRLKKCLKVGMRRE 138
>gi|297684595|ref|XP_002819914.1| PREDICTED: nuclear receptor ROR-beta [Pongo abelii]
Length = 464
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|449513880|ref|XP_002189105.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Taeniopygia guttata]
Length = 413
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 80 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 135
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 136 YCRLKKCLKVGMRRE 150
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 109 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 164
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 165 YCRLKKCLKVGMRRE 179
>gi|358332828|dbj|GAA51438.1| nuclear receptor subfamily 2 group C member 2 [Clonorchis sinensis]
Length = 1789
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/74 (47%), Positives = 52/74 (70%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC+VCGD++SG+HYG+ SC+GC GFFKRSI + Y C++ + C ++K +RN+C+
Sbjct: 669 PCRVCGDKASGRHYGVVSCEGCKGFFKRSIRGHVSYVCRSDQN----CLVNKAYRNRCQY 724
Query: 100 CRLNKCFMSAMNKD 113
CRL KC + M +
Sbjct: 725 CRLQKCLLVGMRSE 738
>gi|355786362|gb|EHH66545.1| hypothetical protein EGM_03558, partial [Macaca fascicularis]
Length = 572
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 72 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 131
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 132 NQD----CIINKHHRNRCQFCRLKKCLEMGM 158
>gi|297263121|ref|XP_001091445.2| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Macaca mulatta]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 NQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|291393486|ref|XP_002713082.1| PREDICTED: nuclear receptor subfamily 2, group C, member 2
[Oryctolagus cuniculus]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 NQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|334324576|ref|XP_001372023.2| PREDICTED: nuclear receptor ROR-gamma [Monodelphis domestica]
Length = 530
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q CPID+T RN+C+
Sbjct: 45 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQS----CPIDRTSRNRCQ 100
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 101 HCRLQKCLALGMSRD 115
>gi|114585553|ref|XP_001158452.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 3
[Pan troglodytes]
gi|296225930|ref|XP_002758705.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Callithrix jacchus]
gi|297670033|ref|XP_002813184.1| PREDICTED: uncharacterized protein LOC100448384 isoform 1 [Pongo
abelii]
gi|390475359|ref|XP_003734943.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Callithrix jacchus]
gi|397511831|ref|XP_003826268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Pan paniscus]
gi|402887045|ref|XP_003906916.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Papio anubis]
gi|403268295|ref|XP_003926213.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Saimiri boliviensis boliviensis]
gi|410036591|ref|XP_003950084.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Pan
troglodytes]
gi|1351190|sp|P49116.1|NR2C2_HUMAN RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|758382|gb|AAC50118.1| hTAK1 [Homo sapiens]
gi|119584619|gb|EAW64215.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_b
[Homo sapiens]
gi|158254612|dbj|BAF83279.1| unnamed protein product [Homo sapiens]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 NQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|67906168|ref|NP_035760.1| nuclear receptor subfamily 2 group C member 2 [Mus musculus]
gi|1351191|sp|P49117.1|NR2C2_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|885593|gb|AAA93150.1| orphan receptor TAK1 [Mus musculus]
gi|73909027|gb|AAI03684.1| Nr2c2 protein [Mus musculus]
gi|73909185|gb|AAI03685.1| Nr2c2 protein [Mus musculus]
gi|74210203|dbj|BAE23331.1| unnamed protein product [Mus musculus]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 SQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|354465507|ref|XP_003495221.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Cricetulus griseus]
gi|344241619|gb|EGV97722.1| Nuclear receptor subfamily 2 group C member 2 [Cricetulus griseus]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 SQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|149728246|ref|XP_001491100.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Equus caballus]
Length = 611
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 111 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 170
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 171 NQD----CIINKHHRNRCQFCRLKKCLEMGM 197
>gi|149036768|gb|EDL91386.1| rCG56527, isoform CRA_a [Rattus norvegicus]
Length = 629
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 129 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 188
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 189 SQD----CIINKHHRNRCQFCRLKKCLEMGM 215
>gi|126336217|ref|XP_001366331.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Monodelphis domestica]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 NQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|431916906|gb|ELK16662.1| Nuclear receptor subfamily 2 group C member 2 [Pteropus alecto]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKTDVQRPQVIEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 NQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|84617148|emb|CAH59197.1| seven-up protein [Cupiennius salei]
Length = 353
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 5/90 (5%)
Query: 25 GRDVTSASRDRL-LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 83
GR T +S D+ I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+ +
Sbjct: 3 GRSGTPSSSDKGGQQIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRN- 61
Query: 84 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
CPID+ HRNQC+ CRL KC M ++
Sbjct: 62 ---CPIDQHHRNQCQYCRLKKCLKMGMRRE 88
>gi|395847192|ref|XP_003796267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Otolemur garnettii]
gi|395847194|ref|XP_003796268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Otolemur garnettii]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 NQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|345786121|ref|XP_541755.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Canis
lupus familiaris]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 NQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|350591455|ref|XP_003483272.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Sus scrofa]
Length = 609
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 109 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 168
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 169 NQD----CIINKHHRNRCQFCRLKKCLEMGM 195
>gi|281347589|gb|EFB23173.1| hypothetical protein PANDA_010183 [Ailuropoda melanoleuca]
Length = 572
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 72 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 131
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 132 NQD----CIINKHHRNRCQFCRLKKCLEMGM 158
>gi|149036770|gb|EDL91388.1| rCG56527, isoform CRA_c [Rattus norvegicus]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 SQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|410949022|ref|XP_003981224.1| PREDICTED: COUP transcription factor 1, partial [Felis catus]
Length = 335
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 8 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 63
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 64 YCRLKKCLKVGMRRE 78
>gi|149728243|ref|XP_001491080.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Equus caballus]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 NQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|538261|gb|AAA21474.1| TR4 orphan receptor [Homo sapiens]
Length = 615
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 115 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 174
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 175 SQD----CIINKHHRNRCQFCRLKKCLEMGM 201
>gi|350591453|ref|XP_003132435.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Sus scrofa]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 NQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|340729306|ref|XP_003402945.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Bombus
terrestris]
Length = 400
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Query: 21 SRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ 80
S+ + S+ D+ +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+
Sbjct: 37 SQANSSQSGSSQTDKSPNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGN 96
Query: 81 GDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+ CPID+ HRNQC+ CRL KC M ++
Sbjct: 97 RN----CPIDQHHRNQCQFCRLKKCLKMGMRRE 125
>gi|449669174|ref|XP_004206958.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like, partial [Hydra
magnipapillata]
Length = 473
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C++C D+++GKHYG SCDGC GFF+RSI +N+ Y+C+ D C I + +RNQCR C
Sbjct: 2 CQICEDKATGKHYGALSCDGCKGFFRRSIRKNQKYSCRFSKD----CNIVRDNRNQCRYC 57
Query: 101 RLNKCFMSAMNKD 113
RL KCF M K+
Sbjct: 58 RLKKCFFVGMKKE 70
>gi|358333531|dbj|GAA52025.1| nuclear receptor subfamily 2 group F member 5 [Clonorchis sinensis]
Length = 972
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
++ C VCGD+SSGKHYG ++C+GC FFKRS+ R YTC+ CPID HRNQC
Sbjct: 256 NVECVVCGDKSSGKHYGQHTCEGCKSFFKRSVRRKLTYTCRG----TRQCPIDVHHRNQC 311
Query: 98 RACRLNKCFMSAMNKD 113
+ CR KC + M K+
Sbjct: 312 QYCRFQKCVRAGMRKE 327
>gi|149412644|ref|XP_001506287.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Ornithorhynchus anatinus]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 NQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|348502671|ref|XP_003438891.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Oreochromis niloticus]
Length = 630
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C+++ D C I+K HRN+C+ C
Sbjct: 145 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSKQD----CVINKHHRNRCQFC 200
Query: 101 RLNKCFMSAMNKD 113
RL KC M +
Sbjct: 201 RLRKCLKMGMKTE 213
>gi|194206592|ref|XP_001918176.1| PREDICTED: nuclear receptor ROR-alpha-like [Equus caballus]
Length = 839
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 387 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 442
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 443 HCRLQKCLAVGMSRD 457
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 79 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 134
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 135 YCRLKKCLKVGMRRE 149
>gi|322792862|gb|EFZ16695.1| hypothetical protein SINV_10759 [Solenopsis invicta]
Length = 397
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/76 (56%), Positives = 50/76 (65%), Gaps = 7/76 (9%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIH---RNRVYTCKAQGDLKGHCPIDKTHRNQC 97
CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC
Sbjct: 11 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRYARNLDYVCKEN----GRCIVDVSRRNQC 66
Query: 98 RACRLNKCFMSAMNKD 113
+ACR KC M +D
Sbjct: 67 QACRFTKCLQVNMKRD 82
>gi|260806090|ref|XP_002597918.1| hypothetical protein BRAFLDRAFT_174225 [Branchiostoma floridae]
gi|229283187|gb|EEN53930.1| hypothetical protein BRAFLDRAFT_174225 [Branchiostoma floridae]
Length = 526
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAAYSCPRNKN----CQIDRTNRNRCQ 63
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 64 HCRLQKCLALGMSRD 78
>gi|410968384|ref|XP_003990687.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Felis catus]
Length = 497
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGDRSSG HYG+ +C+GC GFF+RS N VY+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDRSSGIHYGVITCEGCKGFFRRSQQCNVVYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|325495567|gb|ADZ17389.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 382
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 43 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 98
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 99 YCRLKKCLKVGMRRE 113
>gi|8394483|ref|NP_059019.1| nuclear receptor subfamily 2 group C member 2 [Rattus norvegicus]
gi|1730013|sp|P55094.1|NR2C2_RAT RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|538260|gb|AAA21475.1| TR4 orphan receptor [Rattus norvegicus]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 SQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|397504531|ref|XP_003822842.1| PREDICTED: COUP transcription factor 1 [Pan paniscus]
Length = 523
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 184 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 239
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 240 YCRLKKCLKVGMRRE 254
>gi|148230541|ref|NP_001087654.1| nuclear receptor subfamily 2 group C member 1-B [Xenopus laevis]
gi|82198455|sp|Q66J63.1|N2C1B_XENLA RecName: Full=Nuclear receptor subfamily 2 group C member 1-B;
AltName: Full=Developmental orphan receptor 2-B;
Short=DOR2-B; Short=xDOR2-B; AltName: Full=Orphan
nuclear receptor TR2-B; AltName: Full=Testicular
receptor 2-B
gi|51703645|gb|AAH81046.1| MGC81787 protein [Xenopus laevis]
Length = 637
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG +C+GC GFFKRSI +N +YTC+ D C I+K +RN+C+ C
Sbjct: 152 CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLIYTCRGSKD----CVINKHYRNRCQYC 207
Query: 101 RLNKCFMSAMNKD 113
RL +C M +D
Sbjct: 208 RLQRCISLGMKQD 220
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 84 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 139
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 140 YCRLKKCLKVGMRRE 154
>gi|325495565|gb|ADZ17388.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 372
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 33 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 88
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 89 YCRLKKCLKVGMRRE 103
>gi|426249719|ref|XP_004018597.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Ovis
aries]
Length = 596
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 SQD----CVINKHHRNRCQFCRLKKCLEMGM 182
>gi|351695773|gb|EHA98691.1| Nuclear receptor subfamily 2 group C member 2 [Heterocephalus
glaber]
Length = 616
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++ D C I+K HRN+C+ C
Sbjct: 137 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQD----CVINKHHRNRCQFC 192
Query: 101 RLNKCFMSAM 110
RL KC M
Sbjct: 193 RLKKCLEMGM 202
>gi|242008309|ref|XP_002424949.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212508563|gb|EEB12211.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 420
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR+SGKHYG+YSC+GC GFFKR++ ++ Y C+ + + C IDK RN+C+ C
Sbjct: 103 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERN----CIIDKRQRNRCQFC 158
Query: 101 RLNKCFMSAMNKD 113
R NKC M ++
Sbjct: 159 RYNKCLAMGMKRE 171
>gi|348586379|ref|XP_003478946.1| PREDICTED: nuclear receptor ROR-gamma-like [Cavia porcellus]
Length = 620
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS + VY+C Q + CPID+T RN+C+
Sbjct: 131 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCHVVYSCTRQQN----CPIDRTSRNRCQ 186
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 187 HCRLQKCLALGMSRD 201
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 84 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 139
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 140 YCRLKKCLKVGMRRE 154
>gi|358338345|dbj|GAA56711.1| retinoic acid receptor RXR-alpha [Clonorchis sinensis]
Length = 675
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR+SG+HYG+ SC+GC GFFKR++ + Y C+ GD CP+D+ R +C+AC
Sbjct: 261 CVICGDRASGRHYGVVSCEGCKGFFKRTVRKQVQYVCRGSGD----CPVDRRKRTRCQAC 316
Query: 101 RLNKCFMSAMNKD 113
R ++C + M ++
Sbjct: 317 RYDRCILKGMKRE 329
>gi|301777570|ref|XP_002924203.1| PREDICTED: COUP transcription factor 2-like [Ailuropoda
melanoleuca]
Length = 383
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 46 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 101
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 102 YCRLKKCLKVGMRRE 116
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 44 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 99
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 100 YCRLKKCLKVGMRRE 114
>gi|327269705|ref|XP_003219633.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Anolis
carolinensis]
Length = 456
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RSI +N VYTC+ C +DK RNQCR C
Sbjct: 61 CAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYTCR----FSRQCIVDKDKRNQCRYC 116
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 117 RLKKCFRAGMKKE 129
>gi|47214501|emb|CAG00925.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 59/98 (60%), Gaps = 6/98 (6%)
Query: 8 CRQIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKR 67
C Q P P G D S D++ ++ C VCGDRSSGKHYG ++C+GC FFKR
Sbjct: 23 CGQEPGGAPGTPNGSTSGNDALSG--DKIPNVDCMVCGDRSSGKHYGQFTCEGCKSFFKR 80
Query: 68 SIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKC 105
S+ RN YTC+ D CPID+ HRNQC+ CRL K
Sbjct: 81 SVRRNLTYTCRGNRD----CPIDQHHRNQCQYCRLKKV 114
>gi|417409902|gb|JAA51440.1| Putative coup transcription factor 2 isoform 1, partial [Desmodus
rotundus]
Length = 346
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 9 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 64
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 65 YCRLKKCLKVGMRRE 79
>gi|281347624|gb|EFB23208.1| hypothetical protein PANDA_013481 [Ailuropoda melanoleuca]
Length = 357
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 20 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 75
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 76 YCRLKKCLKVGMRRE 90
>gi|426218929|ref|XP_004003687.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor ROR-gamma [Ovis
aries]
Length = 524
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 9 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 64
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 65 HCRLQKCLALGMSRD 79
>gi|417411925|gb|JAA52381.1| Putative nuclear receptor subfamily protein 2 group c member 2,
partial [Desmodus rotundus]
Length = 610
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 110 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 169
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 170 NQD----CIINKHHRNRCQFCRLKKCLEMGM 196
>gi|440907586|gb|ELR57717.1| COUP transcription factor 1, partial [Bos grunniens mutus]
Length = 368
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 29 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 84
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 85 YCRLKKCLKVGMRRE 99
>gi|355707885|gb|AES03095.1| nuclear receptor subfamily 2, group C, member 2 [Mustela putorius
furo]
Length = 609
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 109 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 168
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 169 NQD----CIINKHHRNRCQFCRLKKCLEMGM 195
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 85 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 140
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 141 YCRLKKCLKVGMRRE 155
>gi|432866384|ref|XP_004070824.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2-like [Oryzias latipes]
Length = 609
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C+++ D C I+K HRN+C+ C
Sbjct: 146 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSKQD----CVINKHHRNRCQFC 201
Query: 101 RLNKCFMSAMNKD 113
RL KC M +
Sbjct: 202 RLRKCLKMGMKTE 214
>gi|431891667|gb|ELK02268.1| COUP transcription factor 2, partial [Pteropus alecto]
gi|432091002|gb|ELK24218.1| COUP transcription factor 2, partial [Myotis davidii]
Length = 343
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 6 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 61
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 62 YCRLKKCLKVGMRRE 76
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 81 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 136
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 137 YCRLKKCLKVGMRRE 151
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 59 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 114
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 115 YCRLKKCLKVGMRRE 129
>gi|440909469|gb|ELR59375.1| COUP transcription factor 2, partial [Bos grunniens mutus]
Length = 348
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 11 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 66
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 67 YCRLKKCLKVGMRRE 81
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 81 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 136
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 137 YCRLKKCLKVGMRRE 151
>gi|391342683|ref|XP_003745645.1| PREDICTED: COUP transcription factor 1-like [Metaseiulus
occidentalis]
Length = 465
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C+VCGDR+SG+HYG+ SCDGC GFFKRS+ R+ ++CK G C +D RNQC+AC
Sbjct: 79 CRVCGDRASGRHYGVASCDGCRGFFKRSVRRDLRFSCKEGGT----CVVDVARRNQCQAC 134
Query: 101 RLNKCFMSAMNKD 113
RL KC M ++
Sbjct: 135 RLKKCLAVNMRRE 147
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 83 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 138
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 139 YCRLKKCLKVGMRRE 153
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 83 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 138
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 139 YCRLKKCLKVGMRRE 153
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 84 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 139
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 140 YCRLKKCLKVGMRRE 154
>gi|348554859|ref|XP_003463242.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Cavia
porcellus]
Length = 596
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++ D C I+K HRN+C+ C
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQD----CVINKHHRNRCQFC 172
Query: 101 RLNKCFMSAM 110
RL KC M
Sbjct: 173 RLKKCLEMGM 182
>gi|344275191|ref|XP_003409397.1| PREDICTED: nuclear receptor ROR-gamma-like [Loxodonta africana]
Length = 752
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 264 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 319
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 320 HCRLQKCLALGMSRD 334
>gi|148696966|gb|EDL28913.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_d [Mus
musculus]
Length = 236
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 136 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 191
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 192 CQYCRLKKCFRVGMRKE 208
>gi|432110921|gb|ELK34395.1| Nuclear receptor subfamily 2 group C member 2 [Myotis davidii]
Length = 596
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++ D C I+K HRN+C+ C
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQD----CIINKHHRNRCQFC 172
Query: 101 RLNKCFMSAM 110
RL KC M
Sbjct: 173 RLKKCLEMGM 182
>gi|1150690|emb|CAA85763.1| hepatocyte nuclear factor 4 (HNF4) [Xenopus laevis]
Length = 455
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 6/89 (6%)
Query: 27 DVTSASRDRLLDIP--CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 84
DVTS S + I C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 35 DVTSLSASNSIGINSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 85 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|395855954|ref|XP_003800408.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Otolemur
garnettii]
Length = 502
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS H N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQHCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 85 HCRLQKCLALGMSRD 99
>gi|301771740|ref|XP_002921290.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Ailuropoda melanoleuca]
Length = 611
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 111 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 170
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 171 NQD----CIINKHHRNRCQFCRLKKCLEMGM 197
>gi|444730350|gb|ELW70737.1| COUP transcription factor 2 [Tupaia chinensis]
Length = 413
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 76 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 131
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 132 YCRLKKCLKVGMRRE 146
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 84 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 139
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 140 YCRLKKCLKVGMRRE 154
>gi|325495563|gb|ADZ17387.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 397
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 59 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 114
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 115 YCRLKKCLKVGMRRE 129
>gi|395855952|ref|XP_003800407.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Otolemur
garnettii]
Length = 514
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS H N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQHCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 85 HCRLQKCLALGMSRD 99
>gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter transcription factor II [Bos taurus]
Length = 339
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 2 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 57
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 58 YCRLKKCLKVGMRRE 72
>gi|355693023|gb|EHH27626.1| COUP transcription factor 2, partial [Macaca mulatta]
Length = 380
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 43 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 98
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 99 YCRLKKCLKVGMRRE 113
>gi|432114341|gb|ELK36269.1| Nuclear receptor ROR-gamma [Myotis davidii]
Length = 664
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Query: 24 DGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 83
D + V + S ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS H Y C Q +
Sbjct: 225 DQKTVYAKSSAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQHCGVAYACTRQQN- 283
Query: 84 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
CPID+T RN+C+ CRL KC M++D
Sbjct: 284 ---CPIDRTSRNRCQHCRLQKCLALGMSRD 310
>gi|344308765|ref|XP_003423047.1| PREDICTED: hypothetical protein LOC100674208 [Loxodonta africana]
Length = 1318
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 692 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 747
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 748 RYQKCLAMGMKRE 760
>gi|341894691|gb|EGT50626.1| hypothetical protein CAEBREN_26321 [Caenorhabditis brenneri]
Length = 389
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD+SSGKHYG +SC+GC FFKRSI R+ YTC+A + C ID HRNQC+ C
Sbjct: 47 CVVCGDKSSGKHYGQFSCEGCKSFFKRSIRRSLSYTCRATKN----CAIDVQHRNQCQYC 102
Query: 101 RLNKCFMSAMNKD 113
RL KC M K+
Sbjct: 103 RLTKCIRMGMRKE 115
>gi|395502499|ref|XP_003755617.1| PREDICTED: COUP transcription factor 2 isoform 3 [Sarcophilus
harrisii]
Length = 418
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 74 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 129
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 130 YCRLKKCLKVGMRRE 144
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 79 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 134
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 135 YCRLKKCLKVGMRRE 149
>gi|355778322|gb|EHH63358.1| COUP transcription factor 2, partial [Macaca fascicularis]
Length = 352
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 15 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 70
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 71 YCRLKKCLKVGMRRE 85
>gi|324507366|gb|ADY43127.1| Nuclear hormone receptor family member nhr-91 [Ascaris suum]
Length = 658
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 59/96 (61%), Gaps = 9/96 (9%)
Query: 21 SRPDGR---DVTSA-SRDRLLDIP--CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRV 74
+R DG ++TSA D L D P C +CGD+SSG HYGIY+C+GC GFFKR++ RV
Sbjct: 178 NRIDGHRSAELTSALMADYLDDDPLLCSICGDKSSGLHYGIYTCEGCKGFFKRTVQNKRV 237
Query: 75 YTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
YTC + CP+ K RN+C+ CR KC M
Sbjct: 238 YTCVSG---TASCPMTKEQRNRCQYCRFQKCLQQGM 270
>gi|2529508|gb|AAB81178.1| developmental orphan receptor 2 [Xenopus laevis]
Length = 542
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG +C+GC GFFKRSI +N VYTC+ D C I+K +RN+C+ C
Sbjct: 125 CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKD----CVINKHYRNRCQYC 180
Query: 101 RLNKCFMSAMNKD 113
RL +C M +D
Sbjct: 181 RLQRCMSLGMKQD 193
>gi|147902641|ref|NP_001080070.1| hepatocyte nuclear factor 4-alpha [Xenopus laevis]
gi|27503338|gb|AAH42224.1| Hnf4 protein [Xenopus laevis]
Length = 464
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 6/89 (6%)
Query: 27 DVTSASRDRLLDIP--CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 84
DVTS S + I C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 44 DVTSLSASNSIGINSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 85 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|83638436|gb|ABC33911.1| retinoid X receptor alpha transcript variant 1 [Sus scrofa]
Length = 374
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR+ ++ YTC+ D C IDK RN+C+ C
Sbjct: 47 CAICGDRSSGKHYGVYSCEGCKGFFKRTARKDLTYTCRDNKD----CLIDKRQRNRCQYC 102
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 103 RYQKCLAMGMKRE 115
>gi|45383323|ref|NP_989752.1| COUP transcription factor 2 [Gallus gallus]
gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII [Gallus gallus]
Length = 410
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 73 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 128
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 129 YCRLKKCLKVGMRRE 143
>gi|148886627|sp|Q91766.2|HNF4A_XENLA RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1
Length = 464
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 6/89 (6%)
Query: 27 DVTSASRDRLLDIP--CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 84
DVTS S + I C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 44 DVTSLSASNSIGINSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 85 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|402593284|gb|EJW87211.1| nuclear hormone receptor [Wuchereria bancrofti]
Length = 526
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 5/87 (5%)
Query: 27 DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 86
+ ++A RD +++ C VCGD++SG+HYG SC+GC GFFKRSI + Y C+ D
Sbjct: 30 NASTAVRDMCVEL-CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKQIGYVCRGTKD---- 84
Query: 87 CPIDKTHRNQCRACRLNKCFMSAMNKD 113
CP+ K HRN+C+ CRL KC M +
Sbjct: 85 CPVTKFHRNRCQYCRLRKCLTMGMRSE 111
>gi|310703613|ref|NP_001185508.1| COUP transcription factor 2 [Taeniopygia guttata]
Length = 410
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 73 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 128
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 129 YCRLKKCLKVGMRRE 143
>gi|149410809|ref|XP_001508281.1| PREDICTED: COUP transcription factor 2 [Ornithorhynchus anatinus]
Length = 411
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Query: 12 PPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHR 71
PP P ++P ++ + + I C VCGD+SSGKHYG ++C+GC FFKRS+ R
Sbjct: 48 PPSTPAQ-TNQPSQQNQAGDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRR 106
Query: 72 NRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
N YTC+A + CPID+ HRNQC+ CRL KC M ++
Sbjct: 107 NLSYTCRANRN----CPIDQHHRNQCQYCRLKKCLKVGMRRE 144
>gi|71995343|ref|NP_500073.2| Protein NHR-41 [Caenorhabditis elegans]
gi|373253901|emb|CCD63480.1| Protein NHR-41 [Caenorhabditis elegans]
Length = 657
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRSI + Y C++Q D CP+ K HRN+C+ C
Sbjct: 194 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKRIGYVCRSQKD----CPVTKFHRNRCQYC 249
Query: 101 RLNKCFMSAMNKD 113
RL KC M +
Sbjct: 250 RLRKCLSMGMRSE 262
>gi|345325277|ref|XP_003430902.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Ornithorhynchus anatinus]
Length = 337
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 48/60 (80%), Gaps = 6/60 (10%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
M++P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MNKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
>gi|57015416|sp|Q9N4B8.4|NHR41_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-41
Length = 615
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRSI + Y C++Q D CP+ K HRN+C+ C
Sbjct: 152 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKRIGYVCRSQKD----CPVTKFHRNRCQYC 207
Query: 101 RLNKCFMSAMNKD 113
RL KC M +
Sbjct: 208 RLRKCLSMGMRSE 220
>gi|344275981|ref|XP_003409789.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Loxodonta
africana]
Length = 616
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 116 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 175
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 176 NQD----CIINKHHRNRCQFCRLKKCLEMGM 202
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 74 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 129
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 130 YCRLKKCLKVGMRRE 144
>gi|538262|gb|AAA21479.1| ovalbumin upstream promoter transcription factor II, partial [Homo
sapiens]
Length = 351
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|300796794|ref|NP_001178990.1| nuclear receptor subfamily 2 group C member 2 [Bos taurus]
gi|296474669|tpg|DAA16784.1| TPA: nuclear receptor subfamily 2 group C member 2-like [Bos
taurus]
gi|440903574|gb|ELR54213.1| Nuclear receptor subfamily 2 group C member 2 [Bos grunniens mutus]
Length = 611
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 111 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 170
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 171 SQD----CIINKHHRNRCQFCRLKKCLEMGM 197
>gi|400270861|gb|AFP75253.1| nuclear receptor subfamily 2 group C member 2, partial [Tupaia
belangeri]
Length = 566
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 91 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 150
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 151 NQD----CIINKHHRNRCQFCRLKKCLEMGM 177
>gi|148613151|gb|ABQ96200.1| UNC-55a isoform [Caenorhabditis briggsae]
Length = 362
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD+SSGKHYG +SC+GC FFKRSI R+ YTC+A + C ID HRNQC+ C
Sbjct: 11 CVVCGDKSSGKHYGQFSCEGCKSFFKRSIRRSLSYTCRATKN----CAIDVQHRNQCQYC 66
Query: 101 RLNKCFMSAMNKD 113
RL KC M K+
Sbjct: 67 RLTKCIRMGMRKE 79
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 44 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 99
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 100 YCRLKKCLKVGMRRE 114
>gi|410951774|ref|XP_003982568.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Felis catus]
Length = 596
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++ D C I+K HRN+C+ C
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQD----CIINKHHRNRCQFC 172
Query: 101 RLNKCFMSAM 110
RL KC M
Sbjct: 173 RLKKCLEMGM 182
>gi|358342829|dbj|GAA58146.1| nuclear receptor ROR-alpha [Clonorchis sinensis]
Length = 878
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 27 DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 86
+V A++ +L C VCGD+S+G HYG+++C+GC GFF+R++HRN+ Y C G
Sbjct: 435 NVGQAAQAGVLLRACVVCGDKSTGAHYGVFTCEGCKGFFRRAVHRNQTYACARNGS---- 490
Query: 87 CPIDKTHRNQCRACRLNKCFMSAMNKD 113
C +++ RN+C+ CR KC S M+KD
Sbjct: 491 CEVNRALRNKCQHCRFLKCLASGMSKD 517
>gi|157117589|ref|XP_001658840.1| nuclear receptor [Aedes aegypti]
Length = 314
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
CKVCGDR+SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 16 CKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----GGKCVVDVSRRNQCQAC 71
Query: 101 RLNKCFMSAMNKD 113
R KC + M ++
Sbjct: 72 RFAKCLQANMRRE 84
>gi|148613153|gb|ABQ96201.1| UNC-55b isoform [Caenorhabditis briggsae]
Length = 349
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD+SSGKHYG +SC+GC FFKRSI R+ YTC+A + C ID HRNQC+ C
Sbjct: 11 CVVCGDKSSGKHYGQFSCEGCKSFFKRSIRRSLSYTCRATKN----CAIDVQHRNQCQYC 66
Query: 101 RLNKCFMSAMNKD 113
RL KC M K+
Sbjct: 67 RLTKCIRMGMRKE 79
>gi|33943630|gb|AAQ55494.1| NHR-41A [Caenorhabditis elegans]
Length = 583
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRSI + Y C++Q D CP+ K HRN+C+ C
Sbjct: 152 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKRIGYVCRSQKD----CPVTKFHRNRCQYC 207
Query: 101 RLNKCFMSAMNKD 113
RL KC M +
Sbjct: 208 RLRKCLSMGMRSE 220
>gi|296485043|tpg|DAA27158.1| TPA: COUP transcription factor 1 [Bos taurus]
Length = 352
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 85 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 140
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 141 YCRLKKCLKVGMRRE 155
>gi|449494303|ref|XP_002198038.2| PREDICTED: hepatocyte nuclear factor 4-gamma [Taeniopygia guttata]
Length = 454
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RSI +N VY+C+ C +DK RNQCR C
Sbjct: 59 CAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYSCR----FNRQCIVDKDKRNQCRYC 114
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 115 RLKKCFRAGMKKE 127
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+A + CPID+ HRNQC+
Sbjct: 73 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRN----CPIDQHHRNQCQ 128
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 129 YCRLKKCLKVGMRRE 143
>gi|432929881|ref|XP_004081273.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oryzias latipes]
Length = 454
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGD+++GKHYG SCDGC GFF+RSI ++ VYTC+ C +DK RNQCR C
Sbjct: 61 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYTCR----FSRQCIVDKDKRNQCRFC 116
Query: 101 RLNKCFMSAMNKD 113
RLNKCF + M K+
Sbjct: 117 RLNKCFRAGMKKE 129
>gi|350537461|ref|NP_001233277.1| retinoic acid receptor, gamma, variant a [Oncorhynchus mykiss]
gi|315466297|emb|CBY83981.1| retinoic acid receptor, gamma, variant a [Oncorhynchus mykiss]
Length = 502
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 76 PCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CQINKVTRNRCQY 131
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 132 CRLQKCFEVGMSKE 145
>gi|307198084|gb|EFN79137.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 351
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ CKVCGDRS GKHYG+Y CDGCS FFKRS+ R ++TC A G C I K RN C
Sbjct: 13 VSCKVCGDRSYGKHYGVYCCDGCSCFFKRSVRRGALFTCIATGS----CTIAKATRNFCP 68
Query: 99 ACRLNKCFMSAMN 111
CRL KCF MN
Sbjct: 69 HCRLKKCFSVGMN 81
>gi|312076288|ref|XP_003140794.1| nuclear hormone receptor family member nhr-41 [Loa loa]
gi|307764038|gb|EFO23272.1| nuclear hormone receptor family member nhr-41 [Loa loa]
Length = 525
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 5/85 (5%)
Query: 29 TSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
++A RD +++ C VCGD++SG+HYG SC+GC GFFKRSI + Y C+ D CP
Sbjct: 32 STAVRDMCVEL-CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKQIGYVCRGTKD----CP 86
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
+ K HRN+C+ CRL KC M +
Sbjct: 87 VTKFHRNRCQYCRLRKCLTMGMRSE 111
>gi|197129927|gb|ACH46425.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 410
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C +CGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 73 IECVICGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 128
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 129 YCRLKKCLKVGMRRE 143
>gi|410951776|ref|XP_003982569.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Felis catus]
Length = 615
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++ D C I+K HRN+C+ C
Sbjct: 136 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQD----CIINKHHRNRCQFC 191
Query: 101 RLNKCFMSAM 110
RL KC M
Sbjct: 192 RLKKCLEMGM 201
>gi|166092128|gb|ABY82108.1| RAR-related orphan receptor C isoform a (predicted) [Callithrix
jacchus]
Length = 491
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+ RN+C+
Sbjct: 5 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRASRNRCQ 60
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 61 HCRLQKCLALGMSRD 75
>gi|194440881|gb|ACF70732.1| peroxisome proliferator activated receptor gamma [Ctenopharyngodon
idella]
Length = 522
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 8/102 (7%)
Query: 12 PPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHR 71
PP++ + +S + SAS +L+I C+VCGD++SG HYG+++C+GC GFF+R+I
Sbjct: 124 PPQFAENSLSLSKAHEDPSAS---VLNIECRVCGDKASGFHYGVHACEGCKGFFRRTIRL 180
Query: 72 NRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
VY DL HC I K RN+CR CR KC M M+ +
Sbjct: 181 KLVYD---HCDL--HCRIHKKSRNKCRYCRFQKCLMVGMSHN 217
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+A + CPID+ HRNQC+
Sbjct: 74 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRN----CPIDQHHRNQCQ 129
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 130 YCRLKKCLKVGMRRE 144
>gi|443715399|gb|ELU07400.1| hypothetical protein CAPTEDRAFT_113501 [Capitella teleta]
Length = 88
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
++ CKVCGD++SG HYGI +C+GC GFFKR++ R YTC KGHCP+DK HRN+C
Sbjct: 4 ELSCKVCGDQASGLHYGIVTCEGCKGFFKRTVQNKRAYTCNG----KGHCPVDKAHRNRC 59
Query: 98 RACRLNKCFMSAM 110
+ CR KC M
Sbjct: 60 QYCRFKKCLYMGM 72
>gi|324505640|gb|ADY42421.1| Nuclear hormone receptor family member nhr-41 [Ascaris suum]
Length = 673
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 32 SRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 91
+RD +++ C VCGD++SG+HYG SC+GC GFFKRSI + Y C+ D CP+ K
Sbjct: 183 ARDVCVEL-CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKQIGYVCRGSKD----CPVTK 237
Query: 92 THRNQCRACRLNKCFMSAMNKD 113
HRN+C+ CRL KC M +
Sbjct: 238 FHRNRCQYCRLRKCLTMGMRSE 259
>gi|410968382|ref|XP_003990686.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Felis catus]
Length = 518
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGDRSSG HYG+ +C+GC GFF+RS N VY+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDRSSGIHYGVITCEGCKGFFRRSQQCNVVYSCTRQQN----CPIDRTSRNRCQ 84
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 85 HCRLQKCLALGMSRD 99
>gi|317419814|emb|CBN81850.1| Hepatocyte nuclear factor 4, gamma [Dicentrarchus labrax]
Length = 455
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGD+++GKHYG SCDGC GFF+RSI ++ VYTC+ C +DK RNQCR C
Sbjct: 62 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYTCR----FSRQCIVDKDKRNQCRFC 117
Query: 101 RLNKCFMSAMNKD 113
RLNKCF + M K+
Sbjct: 118 RLNKCFRAGMKKE 130
>gi|427794421|gb|JAA62662.1| Putative nuclear receptor hormone receptor in 78-like protein,
partial [Rhipicephalus pulchellus]
Length = 463
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SG+HYG SC+GC GFFKRSI + YTC+ D C + K HRN+C+ C
Sbjct: 27 CVVCGDRASGRHYGAVSCEGCKGFFKRSIRKQLAYTCRGSRD----CQVTKHHRNRCQYC 82
Query: 101 RLNKCFMSAMNKD 113
RL+KC M D
Sbjct: 83 RLHKCLSMGMRAD 95
>gi|158702320|gb|ABW77511.1| retinoic acid receptor gamma a [Salmo salar]
Length = 504
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 76 PCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CQINKVTRNRCQY 131
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 132 CRLQKCFEVGMSKE 145
>gi|378705842|gb|AFC34773.1| RORgamma1 [Ctenopharyngodon idella]
Length = 479
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HY + +C+GC GFF+RS N +Y+C Q + C ID+T
Sbjct: 2 RAQIEVIPCKICGDKSSGIHYRVITCEGCKGFFRRSQQNNAIYSCSRQRN----CLIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
+RN+C+ CRL KC M++D
Sbjct: 58 NRNRCQHCRLQKCLALGMSRD 78
>gi|351702700|gb|EHB05619.1| Nuclear receptor ROR-gamma, partial [Heterocephalus glaber]
Length = 496
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 6 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 61
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 62 HCRLQKCLALGMSRD 76
>gi|291397992|ref|XP_002715400.1| PREDICTED: RAR-related orphan receptor C [Oryctolagus cuniculus]
Length = 502
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS + Y+C Q + CPID+T RN+C+
Sbjct: 17 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCHVAYSCTRQQN----CPIDRTSRNRCQ 72
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 73 HCRLQKCLALGMSRD 87
>gi|21310111|gb|AAM46151.1|AF378829_1 nuclear hormone receptor RXR [Branchiostoma floridae]
Length = 522
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C++CGDR+SGKHYG+YSC+GC GFFKR++ ++ Y C+ D C IDK RN+C+ C
Sbjct: 160 CQICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDNRD----CVIDKRQRNRCQYC 215
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 216 RYQKCLAMGMKRE 228
>gi|449472225|ref|XP_002196349.2| PREDICTED: hepatocyte nuclear factor 4-beta-like [Taeniopygia
guttata]
Length = 468
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C IDK RNQCR C
Sbjct: 70 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FNRQCVIDKDKRNQCRYC 125
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 126 RLKKCFRAGMKKE 138
>gi|347800621|ref|NP_001025747.2| hepatic nuclear factor 4beta [Gallus gallus]
Length = 468
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C IDK RNQCR C
Sbjct: 70 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FSRQCVIDKDKRNQCRYC 125
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 126 RLKKCFRAGMKKE 138
>gi|47223458|emb|CAF97945.1| unnamed protein product [Tetraodon nigroviridis]
Length = 431
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGD+++GKHYG SCDGC GFF+RSI + VYTC+ C +DK RNQCR C
Sbjct: 60 CAICGDKATGKHYGASSCDGCKGFFRRSIRKGHVYTCR----FSRQCIVDKDKRNQCRFC 115
Query: 101 RLNKCFMSAMNKD 113
RLNKCF + M K+
Sbjct: 116 RLNKCFRAGMKKE 128
>gi|350421758|ref|XP_003492948.1| PREDICTED: transcription factor HNF-4 homolog [Bombus impatiens]
Length = 444
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 26 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCR----FSRNCVVDKDKRNQCRYC 81
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 82 RLRKCFKAGMKKE 94
>gi|348512222|ref|XP_003443642.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oreochromis
niloticus]
Length = 477
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGD+++GKHYG SCDGC GFF+RSI ++ VYTC+ C +DK RNQCR C
Sbjct: 57 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYTCR----FSRQCVVDKDKRNQCRFC 112
Query: 101 RLNKCFMSAMNKD 113
RLNKCF + M K+
Sbjct: 113 RLNKCFRAGMKKE 125
>gi|326927493|ref|XP_003209927.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Meleagris
gallopavo]
Length = 468
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C IDK RNQCR C
Sbjct: 70 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FSRQCVIDKDKRNQCRYC 125
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 126 RLKKCFRAGMKKE 138
>gi|340726817|ref|XP_003401749.1| PREDICTED: transcription factor HNF-4 homolog isoform 1 [Bombus
terrestris]
Length = 453
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 35 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCR----FSRNCVVDKDKRNQCRYC 90
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 91 RLRKCFKAGMKKE 103
>gi|181330916|ref|NP_001116766.1| nuclear receptor subfamily 2 group C member 2 [Danio rerio]
Length = 623
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRS+ ++ Y+C++ D C I+K HRN+C+ C
Sbjct: 147 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKSLTYSCRSNQD----CVINKHHRNRCQFC 202
Query: 101 RLNKCFMSAM 110
RL KC M
Sbjct: 203 RLRKCLEMGM 212
>gi|126304932|ref|XP_001375141.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Monodelphis
domestica]
Length = 459
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C IDK RNQCR C
Sbjct: 60 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FNRQCVIDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLRKCFRAGMKKE 128
>gi|148234557|ref|NP_001087950.1| Nr2f2 protein [Xenopus laevis]
gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus laevis]
Length = 404
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 66 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 121
Query: 99 ACRLNKCFMSAMNKD 113
CR KC M ++
Sbjct: 122 YCRFKKCLKVGMRRE 136
>gi|322786992|gb|EFZ13216.1| hypothetical protein SINV_06354 [Solenopsis invicta]
Length = 64
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 45/54 (83%)
Query: 60 GCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
GCSGFFKRSIH NR Y CKAQG KG CPIDKTHRNQCRACRL KCF + MNKD
Sbjct: 6 GCSGFFKRSIHSNREYICKAQGAKKGRCPIDKTHRNQCRACRLAKCFEANMNKD 59
>gi|268580289|ref|XP_002645127.1| C. briggsae CBR-NHR-236 protein [Caenorhabditis briggsae]
Length = 299
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 50/72 (69%), Gaps = 4/72 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C+VCGDR+SG+HYG+ SCDGC GFFKRSI RN YTCK C ID RNQC++C
Sbjct: 12 CRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYTCKE----AKRCVIDVVRRNQCQSC 67
Query: 101 RLNKCFMSAMNK 112
R KC +MN+
Sbjct: 68 RFQKCLAVSMNR 79
>gi|357612132|gb|EHJ67823.1| putative PNR-like protein [Danaus plexippus]
Length = 431
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
++ C+VCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC
Sbjct: 6 EVVCRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYICKENGS----CIVDVSRRNQC 61
Query: 98 RACRLNKCFMSAMNKD 113
+ACR +KC M KD
Sbjct: 62 QACRFSKCLRVNMKKD 77
>gi|270010979|gb|EFA07427.1| hepatocyte nuclear factor 4 [Tribolium castaneum]
Length = 502
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 73 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCR----FSRNCIVDKDKRNQCRYC 128
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 129 RLRKCFKAGMKKE 141
>gi|340726819|ref|XP_003401750.1| PREDICTED: transcription factor HNF-4 homolog isoform 2 [Bombus
terrestris]
Length = 485
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 67 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCR----FSRNCVVDKDKRNQCRYC 122
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 123 RLRKCFKAGMKKE 135
>gi|410908921|ref|XP_003967939.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Takifugu
rubripes]
Length = 453
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGD+++GKHYG SCDGC GFF+RSI ++ +YTC+ C +DK RNQCR C
Sbjct: 60 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHIYTCR----FSRQCIVDKDKRNQCRFC 115
Query: 101 RLNKCFMSAMNKD 113
RLNKCF + M K+
Sbjct: 116 RLNKCFRAGMKKE 128
>gi|341892635|gb|EGT48570.1| CBN-NHR-236 protein [Caenorhabditis brenneri]
Length = 284
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 52/73 (71%), Gaps = 6/73 (8%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCK-AQGDLKGHCPIDKTHRNQCRA 99
C+VCGDR+SG+HYG+ SCDGC GFFKRSI RN YTCK QG C +D RNQC+A
Sbjct: 12 CRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYTCKEGQG-----CVVDVVRRNQCQA 66
Query: 100 CRLNKCFMSAMNK 112
CR KC +MN+
Sbjct: 67 CRFQKCLAVSMNR 79
>gi|358251510|gb|AEU04704.1| retinoid X receptor beta [Lateolabrax japonicus]
Length = 444
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ + C +DK RN+C+ C
Sbjct: 90 CVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKE----CLVDKRQRNRCQYC 145
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 146 RYQKCLAMGMKRE 158
>gi|345328556|ref|XP_001510073.2| PREDICTED: hepatocyte nuclear factor 4-beta-like [Ornithorhynchus
anatinus]
Length = 462
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C IDK RNQCR C
Sbjct: 59 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FNRQCVIDKDKRNQCRYC 114
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 115 RLRKCFRAGMKKE 127
>gi|164414403|ref|NP_001103637.1| nuclear receptor ROR-alpha [Danio rerio]
gi|156720176|dbj|BAF76726.1| retinoid-related orphan receptor alpha 2 [Danio rerio]
Length = 468
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 87
V SA + ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C
Sbjct: 5 VISAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN----C 60
Query: 88 PIDKTHRNQCRACRLNKCFMSAMNKD 113
ID+T RN+C+ CRL KC M++D
Sbjct: 61 LIDRTSRNRCQHCRLQKCLAVGMSRD 86
>gi|432865288|ref|XP_004070509.1| PREDICTED: retinoic acid receptor gamma-A isoform 2 [Oryzias
latipes]
Length = 510
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 84 PCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CQINKVTRNRCQY 139
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 140 CRLQKCFEVGMSKE 153
>gi|321463821|gb|EFX74834.1| hypothetical protein DAPPUDRAFT_323993 [Daphnia pulex]
Length = 539
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SG+HYG SC+GC GFFKRSI + YTC+ D C + K HRN+C+ C
Sbjct: 28 CVVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYTCRGGKD----CEVTKHHRNRCQYC 83
Query: 101 RLNKCFMSAMNKD 113
RL KC M D
Sbjct: 84 RLQKCLSMGMRSD 96
>gi|395508412|ref|XP_003758506.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Sarcophilus
harrisii]
Length = 474
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C IDK RNQCR C
Sbjct: 70 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FNRQCVIDKDKRNQCRYC 125
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 126 RLRKCFRAGMKKE 138
>gi|189239605|ref|XP_968613.2| PREDICTED: similar to hepatocyte nuclear factor 4 [Tribolium
castaneum]
Length = 405
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 73 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCR----FSRNCIVDKDKRNQCRYC 128
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 129 RLRKCFKAGMKKE 141
>gi|449689899|ref|XP_004212178.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like,
partial [Hydra magnipapillata]
Length = 106
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG+Y+C+GC FFKRSI RN YTC+A + C ID HRNQC+
Sbjct: 36 IDCGVCGDKSSGKHYGVYTCEGCKSFFKRSIRRNLAYTCRAFQN----CSIDLNHRNQCQ 91
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M KD
Sbjct: 92 YCRLKKCVKVGMRKD 106
>gi|449282512|gb|EMC89345.1| Hepatocyte nuclear factor 4-beta [Columba livia]
Length = 459
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C IDK RNQCR C
Sbjct: 61 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHIYSCR----FSRQCVIDKDKRNQCRYC 116
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 117 RLKKCFRAGMKKE 129
>gi|427785707|gb|JAA58305.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 433
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 9/102 (8%)
Query: 12 PPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHR 71
PP PQ +R S S+ C +CGDR+SGKHYG+YSC+GC GFFKR++ +
Sbjct: 88 PPAAPQQAATRYPPNHPLSGSKHL-----CSICGDRASGKHYGVYSCEGCKGFFKRTVRK 142
Query: 72 NRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+ Y C+ + + C IDK RN+C+ CR KC M ++
Sbjct: 143 DLTYACREERN----CVIDKRQRNRCQYCRYQKCLSCGMKRE 180
>gi|348533850|ref|XP_003454417.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Oreochromis niloticus]
Length = 426
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ + C +DK RN+C+ C
Sbjct: 90 CVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKE----CLVDKRQRNRCQYC 145
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 146 RYQKCLAMGMKRE 158
>gi|112984316|ref|NP_001037474.1| hepatocyte nuclear factor 4 isoform a [Bombyx mori]
gi|2734850|gb|AAB93762.1| hepatocyte nuclear factor 4 isoform a [Bombyx mori]
Length = 436
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 57 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHLYTCR----FSRNCVVDKDKRNQCRYC 112
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 113 RLRKCFKAGMKKE 125
>gi|391334318|ref|XP_003741552.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Metaseiulus
occidentalis]
Length = 574
Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGD++SGKHYG++SC+GC GFFKR++ ++ Y C+ + C IDK RN+C+ C
Sbjct: 257 CSICGDKASGKHYGVFSCEGCKGFFKRTVRKDLTYACREE----RRCLIDKRQRNRCQYC 312
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 313 RYQKCLQCGMKRE 325
>gi|33943632|gb|AAQ55495.1| NHR-41B [Caenorhabditis elegans]
Length = 459
Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRSI + Y C++Q D CP+ K HRN+C+ C
Sbjct: 28 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKRIGYVCRSQKD----CPVTKFHRNRCQYC 83
Query: 101 RLNKCFMSAMNKD 113
RL KC M +
Sbjct: 84 RLRKCLSMGMRSE 96
>gi|118343980|ref|NP_001071809.1| nuclear receptor [Ciona intestinalis]
gi|70571095|dbj|BAE06678.1| nuclear receptor [Ciona intestinalis]
Length = 507
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 12/114 (10%)
Query: 5 VGNCRQIPPRYPQYFMSRPDGRDVTSASRDRLLDIP-----CKVCGDRSSGKHYGIYSCD 59
+G +P +YPQ + G ++ S S +P C VCGDR+SGKHYG+YSC+
Sbjct: 131 MGQGSMVPLQYPQLSSTENMGTNMFSVSSS---GVPLSKHICAVCGDRASGKHYGVYSCE 187
Query: 60 GCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
GC GFFKR++ + YTC+ D C IDK RN+C+ CR KC M K+
Sbjct: 188 GCKGFFKRTVRKYLTYTCRDDKD----CIIDKRQRNRCQYCRYQKCITMGMKKE 237
>gi|45708743|gb|AAH51670.1| NR2C2 protein [Homo sapiens]
gi|313882494|gb|ADR82733.1| Unknown protein [synthetic construct]
Length = 530
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 115 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 174
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 175 NQD----CIINKHHRNRCQFCRLKKCLEMGM 201
>gi|444726234|gb|ELW66773.1| Hepatocyte nuclear factor 4-alpha [Tupaia chinensis]
Length = 464
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 12/93 (12%)
Query: 29 TSASRDRLLDIP--------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ 80
TS S L++P C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 40 TSPSEGTNLNVPNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR-- 97
Query: 81 GDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C +DK RNQCR CRL KCF + M K+
Sbjct: 98 --FSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|158702341|gb|ABW77530.1| retinoic acid receptor gamma b [Salmo salar]
Length = 437
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 28 PCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CQINKVTRNRCQY 83
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 84 CRLQKCFEVGMSKE 97
>gi|545176|gb|AAB29813.1| retinoic acid receptor alpha, RAR alpha(PLZF=zinc finger protein,
PLZF-RAR alpha isoform A=fusion protein) {translocation}
[human, acute promyelocytic leukemia patient, Peptide
Mutant, 858 aa]
Length = 858
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ +C+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 483 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKN----CIINKVTRNRCQY 538
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 539 CRLQKCFEVGMSKE 552
>gi|218156204|dbj|BAH03334.1| retinoic acid receptor 2 [Lethenteron camtschaticum]
Length = 479
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 42/74 (56%), Positives = 52/74 (70%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC KG C I+K RN+C+
Sbjct: 90 PCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCPRD---KG-CVINKVTRNRCQY 145
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 146 CRLQKCFEVGMSKE 159
>gi|114049537|emb|CAJ90622.1| HR3 isoform B1 [Blattella germanica]
Length = 651
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 12 PPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHR 71
PP P+ + PD R S R ++ IPCKVCGD+SSG HYG+ +C+GC GFF+RS
Sbjct: 56 PP--PEGALLAPDKRSANSI-RAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSS 112
Query: 72 NRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
Y C + C +D+ +RN+C+ CRL KC M++D
Sbjct: 113 VVNYQCPRNKN----CVVDRVNRNRCQYCRLQKCLRLGMSRD 150
>gi|400270854|gb|AFP75251.1| hepatocyte nuclear factor 4, partial [Tupaia belangeri]
Length = 474
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 12/93 (12%)
Query: 29 TSASRDRLLDIP--------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ 80
TS S L++P C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 40 TSPSEGTNLNVPNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR-- 97
Query: 81 GDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C +DK RNQCR CRL KCF + M K+
Sbjct: 98 --FSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|94482822|gb|ABF22438.1| retinoic acid receptor gamma [Takifugu rubripes]
Length = 500
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 76 PCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CQINKVTRNRCQY 131
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 132 CRLQKCFEVGMSKE 145
>gi|348521578|ref|XP_003448303.1| PREDICTED: retinoic acid receptor gamma-A-like [Oreochromis
niloticus]
Length = 495
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 84 PCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CQINKVTRNRCQY 139
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 140 CRLQKCFEVGMSKE 153
>gi|358251512|gb|AEU04705.1| retinoic acid receptor gamma [Lateolabrax japonicus]
Length = 501
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 76 PCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CQINKVTRNRCQY 131
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 132 CRLQKCFEVGMSKE 145
>gi|432908440|ref|XP_004077862.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 443
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ + C +DK RN+C+ C
Sbjct: 90 CVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKE----CLVDKRQRNRCQYC 145
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 146 RYQKCLAMGMKRE 158
>gi|290555896|ref|NP_001166834.1| hepatocyte nuclear factor 4 isoform b [Bombyx mori]
gi|2734852|gb|AAB93763.1| hepatocyte nuclear factor 4 isoform b [Bombyx mori]
Length = 410
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 31 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHLYTCR----FSRNCVVDKDKRNQCRYC 86
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 87 RLRKCFKAGMKKE 99
>gi|221131649|ref|XP_002156561.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Hydra magnipapillata]
Length = 419
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C++CGDRSSG+HYG+ SCDGC GFFKRS+ RN Y CK QG+ C ID RNQC+ C
Sbjct: 35 CRICGDRSSGRHYGVPSCDGCRGFFKRSVRRNVSYACKFQGE----CVIDLKRRNQCQFC 90
Query: 101 RLNKCFMSAMNKD 113
R +C MNK+
Sbjct: 91 RYQRCLKVGMNKN 103
>gi|395513258|ref|XP_003760844.1| PREDICTED: nuclear receptor ROR-beta-like [Sarcophilus harrisii]
Length = 334
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 15 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCSRQRN----CPIDRTSRNRCQ 70
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 71 HCRLQKCLALGMSRD 85
>gi|8895467|gb|AAF80976.1| retinoic acid receptor gamma 2I [Ambystoma mexicanum]
Length = 446
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 78 PCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CQINKVTRNRCQY 133
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 134 CRLQKCFEVGMSKE 147
>gi|2352809|gb|AAB69281.1| developmental orphan receptor-1 precursor [Ambystoma mexicanum]
Length = 416
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG +C+GC GFFKRSI +N VYTC+ + C I+K HRN+C+ C
Sbjct: 151 CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKE----CIINKHHRNRCQYC 206
Query: 101 RLNKCFMSAMNKD 113
RL +C M +D
Sbjct: 207 RLQRCIALGMKQD 219
>gi|410905545|ref|XP_003966252.1| PREDICTED: retinoic acid receptor RXR-beta-A-like [Takifugu
rubripes]
Length = 404
Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ + C +DK RN+C+ C
Sbjct: 68 CVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKE----CLVDKRQRNRCQYC 123
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 124 RYQKCLAMGMKRE 136
>gi|378705840|gb|AFC34772.1| RORalpha2 [Ctenopharyngodon idella]
Length = 468
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 57/86 (66%), Gaps = 4/86 (4%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 87
V SA + ++ IPCK+CGD SSG HYG+ +C+GC GFF+RS N Y+C Q + C
Sbjct: 5 VISAMKAQIEIIPCKICGDESSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN----C 60
Query: 88 PIDKTHRNQCRACRLNKCFMSAMNKD 113
ID+T RN+C+ CRL KC M++D
Sbjct: 61 LIDRTSRNRCQHCRLQKCLAVGMSRD 86
>gi|321476560|gb|EFX87520.1| hypothetical protein DAPPUDRAFT_311954 [Daphnia pulex]
Length = 616
Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 23 PDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD 82
P R+ ++ R ++ IPCKVCGD+SSG HYG+ +C+GC GFF+RS Y C Q +
Sbjct: 168 PPRRNSNNSIRAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRQKN 227
Query: 83 LKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C +D+ +RN+C+ CRL KC M++D
Sbjct: 228 ----CVVDRVNRNRCQYCRLQKCLALGMSRD 254
>gi|431921630|gb|ELK18982.1| Retinoic acid receptor gamma, partial [Pteropus alecto]
Length = 534
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 165 PCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CIINKVTRNRCQY 220
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 221 CRLQKCFEVGMSKE 234
>gi|307191079|gb|EFN74819.1| Transcription factor HNF-4-like protein [Camponotus floridanus]
Length = 426
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ L C IDK RNQCR C
Sbjct: 23 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHQYTCR----LMRKCQIDKDKRNQCRYC 78
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 79 RLRKCFRAGMKKE 91
>gi|301617695|ref|XP_002938282.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Xenopus
(Silurana) tropicalis]
Length = 509
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG SC+GC GFFKRS+ ++ Y+C++ D C I+K HRN+C+ C
Sbjct: 116 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKSLTYSCRSSQD----CVINKHHRNRCQFC 171
Query: 101 RLNKCFMSAM 110
RL KC M
Sbjct: 172 RLKKCLEMGM 181
>gi|262358093|gb|ACY56691.1| HR3 nuclear receptor [Daphnia pulex]
Length = 636
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 23 PDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD 82
P R+ ++ R ++ IPCKVCGD+SSG HYG+ +C+GC GFF+RS Y C Q +
Sbjct: 151 PPRRNSNNSIRAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRQKN 210
Query: 83 LKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C +D+ +RN+C+ CRL KC M++D
Sbjct: 211 ----CVVDRVNRNRCQYCRLQKCLALGMSRD 237
>gi|74006096|ref|XP_536146.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 1 [Canis lupus
familiaris]
Length = 463
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
SAS L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 SASPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|432865286|ref|XP_004070508.1| PREDICTED: retinoic acid receptor gamma-A isoform 1 [Oryzias
latipes]
Length = 502
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 76 PCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CQINKVTRNRCQY 131
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 132 CRLQKCFEVGMSKE 145
>gi|296213374|ref|XP_002753242.1| PREDICTED: nuclear receptor ROR-alpha [Callithrix jacchus]
Length = 468
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 87
V +A + ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C
Sbjct: 5 VIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----C 60
Query: 88 PIDKTHRNQCRACRLNKCFMSAMNKD 113
ID+T RN+C+ CRL KC M++D
Sbjct: 61 LIDRTSRNRCQHCRLQKCLAVGMSRD 86
>gi|195329610|ref|XP_002031503.1| GM24010 [Drosophila sechellia]
gi|194120446|gb|EDW42489.1| GM24010 [Drosophila sechellia]
Length = 1085
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 4/71 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C + CPID+ H
Sbjct: 193 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCGGSRN----CPIDQHH 248
Query: 94 RNQCRACRLNK 104
RNQC+ CRL K
Sbjct: 249 RNQCQYCRLKK 259
>gi|440900685|gb|ELR51764.1| Retinoic acid receptor gamma, partial [Bos grunniens mutus]
Length = 577
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 208 PCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CIINKVTRNRCQY 263
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 264 CRLQKCFEVGMSKE 277
>gi|353232893|emb|CCD80248.1| putative hepatocyte nuclear factor 4-alpha (hnf-4-alpha)
[Schistosoma mansoni]
Length = 1061
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +C D+++GKHYG YSCDGC GFF+RS+ R YTC+ K +C + K RNQCR C
Sbjct: 280 CLICEDKATGKHYGAYSCDGCKGFFRRSVRRKHSYTCRH----KKNCIVTKDKRNQCRFC 335
Query: 101 RLNKCFMSAMNK 112
R KCF M +
Sbjct: 336 RFRKCFRVGMKE 347
>gi|322795773|gb|EFZ18452.1| hypothetical protein SINV_10428 [Solenopsis invicta]
Length = 441
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +C DR++GKHYG SCDGC GFF+RS+ +N YTC+ Q CPID+ RNQCR C
Sbjct: 28 CAICSDRATGKHYGAASCDGCKGFFRRSVRKNHQYTCRFQ----RKCPIDRDKRNQCRYC 83
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 84 RLRKCFRAGMKKE 96
>gi|73909187|gb|AAI03687.1| Nr2c2 protein [Mus musculus]
Length = 501
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 SQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>gi|383505564|gb|AFH36361.1| FI19919p1 [Drosophila melanogaster]
Length = 605
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SG+HYG SC+GC GFFKRSI + Y C+ + C + K HRN+C+ C
Sbjct: 56 CLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMN----CEVTKHHRNRCQFC 111
Query: 101 RLNKCFMSAMNKD 113
RL KC S M D
Sbjct: 112 RLQKCLASGMRSD 124
>gi|52545866|emb|CAH56277.1| hypothetical protein [Homo sapiens]
Length = 636
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ +C+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 82 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKN----CIINKVTRNRCQY 137
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 138 CRLQKCFEVGMSKE 151
>gi|114049539|emb|CAJ90623.1| HR3 isoform B2 [Blattella germanica]
Length = 566
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 12 PPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHR 71
PP P+ + PD R S R ++ IPCKVCGD+SSG HYG+ +C+GC GFF+RS
Sbjct: 56 PP--PEGALLAPDKRSANSI-RAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSS 112
Query: 72 NRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
Y C + C +D+ +RN+C+ CRL KC M++D
Sbjct: 113 VVNYQCPRNKN----CVVDRVNRNRCQYCRLQKCLRLGMSRD 150
>gi|410226726|gb|JAA10582.1| retinoic acid receptor, gamma [Pan troglodytes]
gi|410300278|gb|JAA28739.1| retinoic acid receptor, gamma [Pan troglodytes]
Length = 454
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 89 PCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CIINKVTRNRCQY 144
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 145 CRLQKCFEVGMSKE 158
>gi|340719405|ref|XP_003398144.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 283
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ CKVCGDRS GKHYG+Y CDGCS FFKRS+ R ++TC A G C +DK RN C
Sbjct: 9 VACKVCGDRSYGKHYGVYCCDGCSCFFKRSVRRGALFTCIAG---TGACFVDKARRNWCP 65
Query: 99 ACRLNKCFMSAMN 111
CRLNKCF MN
Sbjct: 66 YCRLNKCFTVGMN 78
>gi|444515066|gb|ELV10728.1| Nuclear receptor ROR-gamma [Tupaia chinensis]
Length = 696
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 24 DGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 83
D + V + S ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS + Y+C Q +
Sbjct: 178 DQQTVYAKSSAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCSVAYSCTRQQN- 236
Query: 84 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
CPID+T RN+C+ CRL KC M++D
Sbjct: 237 ---CPIDRTSRNRCQHCRLQKCLALGMSRD 263
>gi|417347487|gb|AFX60116.1| nuclear receptor USP isoform 1 [Spodoptera frugiperda]
Length = 466
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR+SGKHYG+YSC+GC GFFKR++ ++ Y C+ + + C IDK RN+C+ C
Sbjct: 113 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERN----CIIDKRQRNRCQYC 168
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 169 RYQKCLACGMKRE 181
>gi|198285543|gb|ACH85310.1| retinoid x receptor beta a [Salmo salar]
Length = 373
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ + C +DK RN+C+ C
Sbjct: 29 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKE----CLVDKRQRNRCQYC 84
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 85 RYQKCLAMGMKRE 97
>gi|195152898|ref|XP_002017373.1| GL22274 [Drosophila persimilis]
gi|194112430|gb|EDW34473.1| GL22274 [Drosophila persimilis]
Length = 777
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
+I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC
Sbjct: 193 NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHHRNQC 248
Query: 98 RACRLNKCFMSAMNKD 113
+ CRL KC M ++
Sbjct: 249 QYCRLKKCLKMGMRRE 264
>gi|8895462|gb|AAF80975.1| retinoic acid receptor gamma 2 [Ambystoma mexicanum]
Length = 441
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 78 PCFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CQINKVTRNRCQY 133
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 134 CRLQKCFEVGMSKE 147
>gi|20126654|dbj|BAB88907.1| seven-up beta [Bombyx mori]
Length = 161
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 6/114 (5%)
Query: 1 MEL-FVGNCRQIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCD 59
+EL F G+ R+ P S+ S++ D+ ++ C VCGD+SSGKHYG ++C+
Sbjct: 45 LELGFRGSWRE-DEHLPSTPASQAASTQSGSSATDKGQNVECVVCGDKSSGKHYGQFTCE 103
Query: 60 GCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
GC FFKRS+ RN Y+C+ CPID+ HRNQC+ CRL KC M ++
Sbjct: 104 GCKSFFKRSVRRNLTYSCRGNRS----CPIDQHHRNQCQFCRLRKCLKMGMRRE 153
>gi|332020205|gb|EGI60649.1| Transcription factor HNF-4-like protein [Acromyrmex echinatior]
Length = 440
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +C DR++GKHYG SCDGC GFF+RS+ +N YTC+ Q CPID+ RNQCR C
Sbjct: 26 CAICSDRATGKHYGAASCDGCKGFFRRSVRKNHQYTCRFQ----RKCPIDRDKRNQCRYC 81
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 82 RLRKCFRAGMKKE 94
>gi|242006615|ref|XP_002424144.1| coup transcription factor, putative [Pediculus humanus corporis]
gi|212507469|gb|EEB11406.1| coup transcription factor, putative [Pediculus humanus corporis]
Length = 192
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 55/80 (68%), Gaps = 4/80 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
D+ +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 75 DKNQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRN----CPIDQHH 130
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQC+ CRL KC M ++
Sbjct: 131 RNQCQYCRLKKCLKMGMRRE 150
>gi|317183315|gb|ADV15461.1| AT13850p [Drosophila melanogaster]
Length = 605
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SG+HYG SC+GC GFFKRSI + Y C+ + C + K HRN+C+ C
Sbjct: 56 CLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMN----CEVTKHHRNRCQFC 111
Query: 101 RLNKCFMSAMNKD 113
RL KC S M D
Sbjct: 112 RLQKCLASGMRSD 124
>gi|47225542|emb|CAG12025.1| unnamed protein product [Tetraodon nigroviridis]
Length = 370
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ + C +DK RN+C+ C
Sbjct: 34 CVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKE----CLVDKRQRNRCQYC 89
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 90 RYQKCLAMGMKRE 102
>gi|33386531|emb|CAD45002.1| retinoid X receptor beta [Takifugu rubripes]
Length = 370
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ + C +DK RN+C+ C
Sbjct: 34 CVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKE----CLVDKRQRNRCQYC 89
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 90 RYQKCLAMGMKRE 102
>gi|405972081|gb|EKC36868.1| Hepatocyte nuclear factor 4-alpha [Crassostrea gigas]
Length = 506
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ +C +DK RNQCR C
Sbjct: 55 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FNRNCVVDKDKRNQCRYC 110
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 111 RLRKCFRAGMKKE 123
>gi|357631166|gb|EHJ78814.1| SXR-like nuclear receptor [Danaus plexippus]
Length = 497
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 81 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHLYTCR----FSRNCVVDKDKRNQCRYC 136
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 137 RLRKCFKAGMKKE 149
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 5 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 60
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 61 DKRQRNRCQYCRYQKCLVMGMKRE 84
>gi|198454165|ref|XP_001359502.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
gi|198132680|gb|EAL28648.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
Length = 777
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
+I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC
Sbjct: 193 NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHHRNQC 248
Query: 98 RACRLNKCFMSAMNKD 113
+ CRL KC M ++
Sbjct: 249 QYCRLKKCLKMGMRRE 264
>gi|4186077|emb|CAA10661.1| ROR gamma T protein [Mus musculus]
Length = 495
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|443715958|gb|ELU07684.1| hypothetical protein CAPTEDRAFT_168520 [Capitella teleta]
Length = 356
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 52/74 (70%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RS+ +N VYTC + C I+KT RN+C+
Sbjct: 18 PCVVCQDKSSGYHYGVSSCEGCKGFFRRSVQKNMVYTCHKEKI----CVINKTTRNRCQY 73
Query: 100 CRLNKCFMSAMNKD 113
CRL KC + M+K+
Sbjct: 74 CRLQKCLATGMSKE 87
>gi|390462622|ref|XP_002747621.2| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 4-alpha
isoform 2 [Callithrix jacchus]
Length = 517
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 60/102 (58%), Gaps = 12/102 (11%)
Query: 20 MSRPDGRDVTSASRDRLLDIP--------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHR 71
M R + TS S L+ P C +CGDR++GKHYG SCDGC GFF+RS+ +
Sbjct: 74 MGRSPPQGXTSPSEGTNLNAPNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRK 133
Query: 72 NRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
N +Y+C+ C +DK RNQCR CRL KCF + M K+
Sbjct: 134 NHMYSCR----FSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE 171
>gi|321454980|gb|EFX66127.1| hypothetical protein DAPPUDRAFT_116667 [Daphnia pulex]
Length = 340
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 31 ASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 90
SR++L + C VCGD++SG+HYG+ SCDGC GFFKRSI RN Y CK C +D
Sbjct: 2 GSRNKL-EALCLVCGDKASGRHYGVSSCDGCRGFFKRSIRRNLDYMCKES----NQCIVD 56
Query: 91 KTHRNQCRACRLNKCFMSAMNKD 113
+ RNQC+ACR +C M +D
Sbjct: 57 VSRRNQCQACRFRRCLEVKMKRD 79
>gi|156357575|ref|XP_001624292.1| predicted protein [Nematostella vectensis]
gi|156211059|gb|EDO32192.1| predicted protein [Nematostella vectensis]
Length = 347
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
Query: 29 TSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 88
++AS +++ C +C D+++G+HYG+ SC+GC GFFKRS+ + YTC+ +L CP
Sbjct: 3 SAASPRPVVNEICAICLDKATGQHYGVTSCEGCKGFFKRSVQNKKDYTCR---NLTKDCP 59
Query: 89 IDKTHRNQCRACRLNKCFMSAMNKD 113
IDK HRN+C+ CR KC + M K+
Sbjct: 60 IDKRHRNRCQYCRFQKCIQAGMIKE 84
>gi|341900174|gb|EGT56109.1| CBN-NHR-41 protein [Caenorhabditis brenneri]
Length = 559
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 17 QYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYT 76
Q S P ++ + + R C VCGD++SG+HYG SC+GC GFFKRSI + Y
Sbjct: 61 QRISSSPKIQNGSGSERSENCGELCVVCGDKASGRHYGAVSCEGCKGFFKRSIRKRIGYV 120
Query: 77 CKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C++ D CP+ K HRN+C+ CRL KC M +
Sbjct: 121 CRSSKD----CPVTKFHRNRCQYCRLRKCLSMGMRSE 153
>gi|24668103|ref|NP_730636.1| Hormone-receptor-like in 78, isoform B [Drosophila melanogaster]
gi|24668107|ref|NP_730637.1| Hormone-receptor-like in 78, isoform C [Drosophila melanogaster]
gi|45553219|ref|NP_996137.1| Hormone-receptor-like in 78, isoform D [Drosophila melanogaster]
gi|320546143|ref|NP_001189151.1| Hormone-receptor-like in 78, isoform E [Drosophila melanogaster]
gi|320546145|ref|NP_001189152.1| Hormone-receptor-like in 78, isoform F [Drosophila melanogaster]
gi|73620966|sp|Q24142.2|HR78_DROME RecName: Full=Nuclear hormone receptor HR78; Short=dHR78; AltName:
Full=Nuclear receptor XR78E/F; AltName: Full=Nuclear
receptor subfamily 2 group D member 1
gi|23094237|gb|AAN12168.1| Hormone-receptor-like in 78, isoform B [Drosophila melanogaster]
gi|23094238|gb|AAN12169.1| Hormone-receptor-like in 78, isoform C [Drosophila melanogaster]
gi|45446065|gb|AAS65089.1| Hormone-receptor-like in 78, isoform D [Drosophila melanogaster]
gi|318069264|gb|ADV37587.1| Hormone-receptor-like in 78, isoform E [Drosophila melanogaster]
gi|318069265|gb|ADV37588.1| Hormone-receptor-like in 78, isoform F [Drosophila melanogaster]
Length = 601
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SG+HYG SC+GC GFFKRSI + Y C+ + C + K HRN+C+ C
Sbjct: 52 CLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMN----CEVTKHHRNRCQFC 107
Query: 101 RLNKCFMSAMNKD 113
RL KC S M D
Sbjct: 108 RLQKCLASGMRSD 120
>gi|196011894|ref|XP_002115810.1| hypothetical protein TRIADDRAFT_50786 [Trichoplax adhaerens]
gi|190581586|gb|EDV21662.1| hypothetical protein TRIADDRAFT_50786 [Trichoplax adhaerens]
Length = 327
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N VYTC+ C IDK RNQCR C
Sbjct: 5 CAICGDRATGKHYGAPSCDGCKGFFRRSVRQNHVYTCR----FGRSCVIDKDKRNQCRYC 60
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 61 RLKKCFRAGMKKE 73
>gi|1036839|gb|AAC46927.1| DHR78 [Drosophila melanogaster]
Length = 601
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SG+HYG SC+GC GFFKRSI + Y C+ + C + K HRN+C+ C
Sbjct: 52 CLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMN----CEVTKHHRNRCQFC 107
Query: 101 RLNKCFMSAMNKD 113
RL KC S M D
Sbjct: 108 RLQKCLASGMRSD 120
>gi|5679307|gb|AAD46913.1|AF163668_1 RORgamma t [Mus musculus]
Length = 495
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|397511213|ref|XP_003825973.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Pan
paniscus]
Length = 474
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|442618705|ref|NP_001262499.1| seven up, isoform E [Drosophila melanogaster]
gi|440217344|gb|AGB95881.1| seven up, isoform E [Drosophila melanogaster]
Length = 554
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
+I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC
Sbjct: 197 NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHHRNQC 252
Query: 98 RACRLNKCFMSAMNKD 113
+ CRL KC M ++
Sbjct: 253 QYCRLKKCLKMGMRRE 268
>gi|380793393|gb|AFE68572.1| nuclear receptor ROR-alpha isoform d, partial [Macaca mulatta]
Length = 334
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 87
V +A + ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C
Sbjct: 5 VIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----C 60
Query: 88 PIDKTHRNQCRACRLNKCFMSAMNKD 113
ID+T RN+C+ CRL KC M++D
Sbjct: 61 LIDRTSRNRCQHCRLQKCLAVGMSRD 86
>gi|403290711|ref|XP_003936451.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Saimiri
boliviensis boliviensis]
Length = 474
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|193598915|ref|XP_001944021.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Acyrthosiphon pisum]
Length = 446
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
+I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC
Sbjct: 92 NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHHRNQC 147
Query: 98 RACRLNKCFMSAMNKD 113
+ CRL KC M ++
Sbjct: 148 QYCRLKKCLKMGMRRE 163
>gi|426331477|ref|XP_004026707.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Gorilla gorilla
gorilla]
Length = 497
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|311115255|gb|ADP69098.1| BCL6 corepressor/retinoic acid receptor alpha fusion protein [Homo
sapiens]
Length = 1931
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ +C+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 1556 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKN----CIINKVTRNRCQY 1611
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 1612 CRLQKCFEVGMSKE 1625
>gi|46575916|ref|NP_032287.2| hepatocyte nuclear factor 4-alpha [Mus musculus]
gi|148886625|sp|P49698.2|HNF4A_MOUSE RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
gi|24657895|gb|AAH39220.1| Hepatic nuclear factor 4, alpha [Mus musculus]
gi|62635464|gb|AAX90602.1| hepatic nuclear factor 4 alpha [Mus musculus]
Length = 474
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|332220315|ref|XP_003259302.1| PREDICTED: nuclear receptor ROR-gamma [Nomascus leucogenys]
Length = 497
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|224172708|ref|XP_002189627.1| PREDICTED: hepatocyte nuclear factor 4-beta-like, partial
[Taeniopygia guttata]
Length = 267
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C IDK RNQCR C
Sbjct: 31 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FNRQCVIDKDKRNQCRYC 86
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 87 RLKKCFRAGMKKE 99
>gi|193783650|dbj|BAG53561.1| unnamed protein product [Homo sapiens]
Length = 497
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|48255918|ref|NP_001001523.1| nuclear receptor ROR-gamma isoform b [Homo sapiens]
gi|21739737|emb|CAD38900.1| hypothetical protein [Homo sapiens]
gi|117646452|emb|CAL38693.1| hypothetical protein [synthetic construct]
gi|325495479|gb|ADZ17345.1| RAR-related orphan nuclear receptor variant 2 [Homo sapiens]
Length = 497
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|410953686|ref|XP_003983501.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Felis
catus]
Length = 464
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|344279999|ref|XP_003411773.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor
4-alpha-like [Loxodonta africana]
Length = 464
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|332810305|ref|XP_003308437.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Pan troglodytes]
gi|397492732|ref|XP_003817274.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Pan paniscus]
Length = 497
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|148886626|sp|P22449.3|HNF4A_RAT RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
Length = 474
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|395829034|ref|XP_003787666.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Otolemur
garnettii]
Length = 464
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|400153986|ref|NP_071516.2| hepatocyte nuclear factor 4-alpha isoform 1 [Rattus norvegicus]
gi|149042998|gb|EDL96572.1| hepatocyte nuclear factor 4, alpha, isoform CRA_a [Rattus
norvegicus]
Length = 474
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|7305439|ref|NP_038674.1| nuclear receptor ROR-alpha [Mus musculus]
gi|1710637|sp|P51448.1|RORA_MOUSE RecName: Full=Nuclear receptor ROR-alpha; AltName: Full=Nuclear
receptor RZR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group F member 1; AltName:
Full=Retinoid-related orphan receptor-alpha
gi|1289326|gb|AAC52513.1| ROR-alpha 1 [Mus musculus]
gi|148694214|gb|EDL26161.1| RAR-related orphan receptor alpha [Mus musculus]
Length = 523
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 17 QYFMSRPDGRDVTSASRDRLLDI-PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
Q + S G VT + ++I PCK+CGD+SSG HYG+ +C+GC GFF+RS N Y
Sbjct: 48 QSYASSSRGISVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATY 107
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+C Q + C ID+T RN+C+ CRL KC M++D
Sbjct: 108 SCPRQKN----CLIDRTSRNRCQHCRLQKCLAVGMSRD 141
>gi|73992030|ref|XP_543008.2| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Canis lupus
familiaris]
Length = 464
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|402856162|ref|XP_003892666.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Papio anubis]
Length = 497
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|31077205|ref|NP_000448.3| hepatocyte nuclear factor 4-alpha isoform b [Homo sapiens]
gi|148886624|sp|P41235.3|HNF4A_HUMAN RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
gi|119596331|gb|EAW75925.1| hepatocyte nuclear factor 4, alpha, isoform CRA_e [Homo sapiens]
gi|147883854|gb|ABQ52204.1| hepatocyte nuclear factor 4, alpha [Homo sapiens]
gi|208966450|dbj|BAG73239.1| hepatocyte nuclear factor 4, alpha [synthetic construct]
gi|325495549|gb|ADZ17380.1| hepatocyte nuclear factor 4 4 alpha variant 2 [Homo sapiens]
Length = 474
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|395829032|ref|XP_003787665.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Otolemur
garnettii]
Length = 474
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|297279993|ref|XP_002801827.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 4 [Macaca
mulatta]
Length = 497
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|575253|emb|CAA54248.1| hepatocyte nuclear factor 4 [Homo sapiens]
Length = 465
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|17737921|ref|NP_524325.1| seven up, isoform B [Drosophila melanogaster]
gi|112858|sp|P16375.1|7UP1_DROME RecName: Full=Steroid receptor seven-up, isoforms B/C; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoforms B/C
gi|158519|gb|AAA62770.1| seven-up protein type 1 [Drosophila melanogaster]
gi|7299588|gb|AAF54773.1| seven up, isoform B [Drosophila melanogaster]
Length = 543
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
+I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC
Sbjct: 197 NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHHRNQC 252
Query: 98 RACRLNKCFMSAMNKD 113
+ CRL KC M ++
Sbjct: 253 QYCRLKKCLKMGMRRE 268
>gi|358339638|dbj|GAA47660.1| hepatocyte nuclear factor 4 [Clonorchis sinensis]
Length = 533
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 59/95 (62%), Gaps = 16/95 (16%)
Query: 23 PDGRD-----VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTC 77
P+ RD ++SAS+ C +CGDR++GKHYG YSCDGC GFF+RS+ RN YTC
Sbjct: 14 PEQRDASPFILSSASQ-------CLICGDRATGKHYGAYSCDGCKGFFRRSVRRNHSYTC 66
Query: 78 KAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNK 112
+ K C I K RNQCR CRL KCF M K
Sbjct: 67 RH----KRACVITKDKRNQCRFCRLRKCFRVGMKK 97
>gi|354486852|ref|XP_003505591.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-gamma-like [Cricetulus griseus]
Length = 463
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|194751435|ref|XP_001958032.1| GF10710 [Drosophila ananassae]
gi|190625314|gb|EDV40838.1| GF10710 [Drosophila ananassae]
Length = 612
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGDR+SG+HYG SC+GC GFFKRSI + Y C+ + C + K HRN+C+ C
Sbjct: 57 CLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGAMN----CEVTKHHRNRCQFC 112
Query: 101 RLNKCFMSAMNKD 113
RL KC S M D
Sbjct: 113 RLQKCLASGMRSD 125
>gi|338719299|ref|XP_003363979.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 464
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|410953684|ref|XP_003983500.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Felis
catus]
Length = 474
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|354493669|ref|XP_003508962.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Cricetulus griseus]
gi|344253293|gb|EGW09397.1| Hepatocyte nuclear factor 4-alpha [Cricetulus griseus]
Length = 464
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|262358091|gb|ACY56690.1| HR3 nuclear receptor [Daphnia magna]
Length = 622
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 23 PDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD 82
P R+ ++ R ++ IPCKVCGD+SSG HYG+ +C+GC GFF+RS Y C Q +
Sbjct: 138 PPRRNSNNSIRAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRQKN 197
Query: 83 LKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C +D+ +RN+C+ CRL KC M++D
Sbjct: 198 ----CVVDRVNRNRCQYCRLQKCLALGMSRD 224
>gi|74180836|dbj|BAE25624.1| unnamed protein product [Mus musculus]
Length = 470
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|220773|dbj|BAA01411.1| hepatocyte nuclear factor 4 [Rattus norvegicus]
Length = 465
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|397511215|ref|XP_003825974.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Pan
paniscus]
Length = 464
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|403290713|ref|XP_003936452.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Saimiri
boliviensis boliviensis]
Length = 464
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|403272547|ref|XP_003928117.1| PREDICTED: retinoic acid receptor RXR-gamma [Saimiri boliviensis
boliviensis]
Length = 463
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|354501846|ref|XP_003512999.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Cricetulus
griseus]
Length = 500
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|351703585|gb|EHB06504.1| Hepatocyte nuclear factor 4-alpha [Heterocephalus glaber]
Length = 474
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|324516544|gb|ADY46562.1| Nuclear hormone receptor family member nhr-1 [Ascaris suum]
Length = 422
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VCGD +SG HYG+ SC+GC FF+R I NR Y+CK GD CPIDK R CR
Sbjct: 61 PCVVCGDAASGIHYGVSSCNGCKTFFRRVIIENRTYSCKQSGD----CPIDKDMRCSCRH 116
Query: 100 CRLNKCFMSAMNK 112
CR KC M++
Sbjct: 117 CRFKKCLRVGMDR 129
>gi|194901808|ref|XP_001980443.1| GG18706 [Drosophila erecta]
gi|195500393|ref|XP_002097354.1| GE26169 [Drosophila yakuba]
gi|190652146|gb|EDV49401.1| GG18706 [Drosophila erecta]
gi|194183455|gb|EDW97066.1| GE26169 [Drosophila yakuba]
Length = 543
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
+I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC
Sbjct: 197 NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHHRNQC 252
Query: 98 RACRLNKCFMSAMNKD 113
+ CRL KC M ++
Sbjct: 253 QYCRLKKCLKMGMRRE 268
>gi|148674390|gb|EDL06337.1| hepatic nuclear factor 4, alpha, isoform CRA_b [Mus musculus]
Length = 465
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|31077207|ref|NP_849180.1| hepatocyte nuclear factor 4-alpha isoform a [Homo sapiens]
gi|325495531|gb|ADZ17371.1| hepatocyte nuclear factor 4 4 alpha variant 1 [Homo sapiens]
Length = 464
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|73992032|ref|XP_852731.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Canis lupus
familiaris]
Length = 474
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|74178793|dbj|BAE34041.1| unnamed protein product [Mus musculus]
Length = 596
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 4/68 (5%)
Query: 43 VCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRL 102
VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++ D C I+K HRN+C+ CRL
Sbjct: 119 VCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQD----CIINKHHRNRCQFCRL 174
Query: 103 NKCFMSAM 110
KC M
Sbjct: 175 KKCLEMGM 182
>gi|395825135|ref|XP_003785797.1| PREDICTED: retinoic acid receptor RXR-gamma [Otolemur garnettii]
Length = 463
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|149733291|ref|XP_001503043.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Equus
caballus]
gi|338719297|ref|XP_003363978.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 474
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|113205738|ref|NP_001038036.1| hepatocyte nuclear factor 4-alpha [Sus scrofa]
gi|70672404|gb|AAZ06405.1| hepatic nuclear factor 4 [Sus scrofa]
Length = 474
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|1595756|emb|CAA61134.1| Hepatocyte nuclear factor 4B [Homo sapiens]
Length = 465
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|227511|prf||1705219A hepatocyte nuclear factor 4
Length = 455
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|56372|emb|CAA40412.1| transcription factor HNF-4 [Rattus rattus]
Length = 455
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|383420563|gb|AFH33495.1| nuclear receptor ROR-gamma isoform b [Macaca mulatta]
Length = 497
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|301763976|ref|XP_002917411.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Ailuropoda melanoleuca]
Length = 464
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|91177055|gb|ABE26882.1| hepatocyte nuclear factor 4alpha [Sus scrofa]
Length = 474
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|1595752|emb|CAA61133.1| Hepatocyte nuclear factor 4A [Homo sapiens]
Length = 455
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|354493667|ref|XP_003508961.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Cricetulus griseus]
Length = 474
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|348563849|ref|XP_003467719.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Cavia
porcellus]
Length = 464
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|216409714|dbj|BAH02294.1| hepatocyte nuclear factor 4, alpha [Homo sapiens]
Length = 465
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|429330061|gb|ADH95692.2| peroxisome proliferator activated receptor gamma [Megalobrama
amblycephala]
Length = 510
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 8/102 (7%)
Query: 12 PPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHR 71
PP++ + +S + SAS +L+I C+VCGD++SG HYG+++C+GC GFF+R+I
Sbjct: 112 PPQFAENSLSLSKAHEDPSAS---VLNIECRVCGDKASGFHYGVHACEGCKGFFRRTIRL 168
Query: 72 NRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
VY DL HC I K RN+C+ CR KC M M+ +
Sbjct: 169 KLVYD---HCDL--HCRIHKKSRNKCQYCRFQKCLMVGMSHN 205
>gi|12484038|gb|AAG53940.1| nuclear hormone receptor [Aedes aegypti]
Length = 493
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
+I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC
Sbjct: 150 NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRN----CPIDQHHRNQC 205
Query: 98 RACRLNKCFMSAMNKD 113
+ CRL KC M ++
Sbjct: 206 QFCRLRKCLKMGMRRE 221
>gi|71725341|ref|NP_001025174.1| hepatocyte nuclear factor 4-alpha isoform e [Homo sapiens]
gi|50980769|gb|AAT91237.1| hepatocyte nuclear factor 4 alpha, transcript variant 7 [Homo
sapiens]
Length = 442
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 38 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 93
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 94 RLKKCFRAGMKKE 106
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|2780196|emb|CAA11109.1| retinoic acid X receptor gamma-1 [Rattus norvegicus]
Length = 322
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 49 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 104
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 105 DKRQRNRCQYCRYQKCLVMGMKRE 128
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|348563847|ref|XP_003467718.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Cavia
porcellus]
Length = 474
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|118404556|ref|NP_001072663.1| RAR-related orphan receptor A [Xenopus (Silurana) tropicalis]
gi|115312907|gb|AAI23954.1| RAR-related orphan receptor A [Xenopus (Silurana) tropicalis]
Length = 267
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 28 VTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 87
V +A + ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C
Sbjct: 4 VIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----C 59
Query: 88 PIDKTHRNQCRACRLNKCFMSAMNKD 113
ID+T RN+C+ CRL KC M++D
Sbjct: 60 LIDRTSRNRCQHCRLQKCLAVGMSRD 85
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|400154015|ref|NP_001257862.1| hepatocyte nuclear factor 4-alpha isoform 3 [Rattus norvegicus]
Length = 439
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 35 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 90
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 91 RLKKCFRAGMKKE 103
>gi|383420561|gb|AFH33494.1| nuclear receptor ROR-gamma isoform b [Macaca mulatta]
Length = 497
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|511934|dbj|BAA06101.1| hepatocyte nuclear factor 4 [Mus musculus]
gi|1093944|prf||2105186A hepatocyte nuclear factor 4
Length = 465
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|71725339|ref|NP_787110.2| hepatocyte nuclear factor 4-alpha isoform d [Homo sapiens]
gi|50980771|gb|AAT91238.1| hepatocyte nuclear factor 4 alpha, transcript variant 8 [Homo
sapiens]
gi|119596327|gb|EAW75921.1| hepatocyte nuclear factor 4, alpha, isoform CRA_a [Homo sapiens]
gi|325495547|gb|ADZ17379.1| hepatocyte nuclear factor 4 4 alpha variant 4 [Homo sapiens]
Length = 452
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 38 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 93
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 94 RLKKCFRAGMKKE 106
>gi|1217961|emb|CAA89989.1| hepatocyte nuclear factor 4 alpha (HNF4alpha4) [Homo sapiens]
gi|1588510|prf||2208436A hepatocyte nuclear factor 4:ISOTYPE=alpha
Length = 504
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 90 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 145
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 146 RLKKCFRAGMKKE 158
>gi|326916579|ref|XP_003204584.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like,
partial [Meleagris gallopavo]
Length = 254
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/45 (84%), Positives = 42/45 (93%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 45
>gi|301763974|ref|XP_002917410.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Ailuropoda melanoleuca]
Length = 474
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|431894415|gb|ELK04215.1| Hepatocyte nuclear factor 4-alpha [Pteropus alecto]
Length = 484
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|302202572|gb|ADL09403.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR+SGKHYG+YSC+GC GFFKR++ ++ Y C+ + + C IDK RN+C+ C
Sbjct: 80 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKN----CIIDKRQRNRCQYC 135
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 136 RYQKCLTMGMKRE 148
>gi|326937432|ref|NP_001192082.1| hepatocyte nuclear factor 4-alpha [Ovis aries]
gi|325305983|gb|ADZ11096.1| hepatocyte nuclear factor 4 alpha [Ovis aries]
Length = 455
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|149042999|gb|EDL96573.1| hepatocyte nuclear factor 4, alpha, isoform CRA_b [Rattus
norvegicus]
Length = 452
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 38 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 93
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 94 RLKKCFRAGMKKE 106
>gi|148674389|gb|EDL06336.1| hepatic nuclear factor 4, alpha, isoform CRA_a [Mus musculus]
Length = 452
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 38 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 93
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 94 RLKKCFRAGMKKE 106
>gi|1314308|gb|AAB00112.1| nucleophosmin-retinoic acid receptor alpha fusion protein NPM-RAR
long form [Homo sapiens]
Length = 563
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ +C+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 188 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKN----CIINKVTRNRCQY 243
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 244 CRLQKCFEVGMSKE 257
>gi|74202317|dbj|BAE23510.1| unnamed protein product [Mus musculus]
Length = 307
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|402882458|ref|XP_003904758.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 4-alpha,
partial [Papio anubis]
Length = 425
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 21 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 76
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 77 RLKKCFRAGMKKE 89
>gi|344236823|gb|EGV92926.1| Retinoic acid receptor RXR-gamma [Cricetulus griseus]
Length = 414
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 120 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 175
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 176 DKRQRNRCQYCRYQKCLVMGMKRE 199
>gi|62752029|ref|NP_001015557.1| hepatocyte nuclear factor 4-alpha [Bos taurus]
gi|32454391|gb|AAP82997.1| hepatocyte nuclear factor 4alpha [Bos taurus]
gi|296481081|tpg|DAA23196.1| TPA: hepatocyte nuclear factor 4, alpha [Bos taurus]
Length = 455
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|432102757|gb|ELK30236.1| Hepatocyte nuclear factor 4-alpha [Myotis davidii]
Length = 455
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|403274571|ref|XP_003929048.1| PREDICTED: nuclear receptor ROR-alpha [Saimiri boliviensis
boliviensis]
Length = 523
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
Query: 7 NCRQIPPRYP---QYFMSRPDGRDVTSASRDRLLDI-PCKVCGDRSSGKHYGIYSCDGCS 62
+ R+ P P Q + S G VT + ++I PCK+CGD+SSG HYG+ +C+GC
Sbjct: 35 SARKSEPPAPVRRQSYSSTSRGISVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCK 94
Query: 63 GFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
GFF+RS N Y+C Q + C ID+T RN+C+ CRL KC M++D
Sbjct: 95 GFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQHCRLQKCLAVGMSRD 141
>gi|347968053|ref|XP_312394.4| AGAP002544-PA [Anopheles gambiae str. PEST]
gi|333468184|gb|EAA07520.4| AGAP002544-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
+I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC
Sbjct: 172 NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRN----CPIDQHHRNQC 227
Query: 98 RACRLNKCFMSAMNKD 113
+ CRL KC M ++
Sbjct: 228 QFCRLRKCLKMGMRRE 243
>gi|301613114|ref|XP_002936047.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Xenopus
(Silurana) tropicalis]
Length = 458
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY C+ C +DK RNQCR C
Sbjct: 59 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYACR----FSRQCIVDKDKRNQCRYC 114
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 115 RLRKCFRAGMKKE 127
>gi|149058123|gb|EDM09280.1| retinoid X receptor gamma, isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>gi|400153996|ref|NP_001257860.1| hepatocyte nuclear factor 4-alpha isoform 2 [Rattus norvegicus]
Length = 449
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 35 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 90
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 91 RLKKCFRAGMKKE 103
>gi|19743903|ref|NP_599023.1| nuclear receptor ROR-alpha isoform a [Homo sapiens]
gi|114657409|ref|XP_001173408.1| PREDICTED: nuclear receptor ROR-alpha isoform 6 [Pan troglodytes]
gi|451564|gb|AAA62658.1| RORalpha1 [Homo sapiens]
gi|14250724|gb|AAH08831.1| RAR-related orphan receptor A [Homo sapiens]
Length = 523
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
Query: 7 NCRQIPPRYP---QYFMSRPDGRDVTSASRDRLLDI-PCKVCGDRSSGKHYGIYSCDGCS 62
+ R+ P P Q + S G VT + ++I PCK+CGD+SSG HYG+ +C+GC
Sbjct: 35 SARKSEPPAPVRRQSYSSTSRGISVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCK 94
Query: 63 GFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
GFF+RS N Y+C Q + C ID+T RN+C+ CRL KC M++D
Sbjct: 95 GFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQHCRLQKCLAVGMSRD 141
>gi|9453875|dbj|BAB03286.1| hepatocyte nuclear factor 4 [Tamias sibiricus]
Length = 455
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|149591564|ref|XP_001507309.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Ornithorhynchus
anatinus]
Length = 419
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FNRQCVVDKDKRNQCRYC 115
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|355784472|gb|EHH65323.1| hypothetical protein EGM_02066 [Macaca fascicularis]
Length = 527
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 123 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 178
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 179 RLKKCFRAGMKKE 191
>gi|355563116|gb|EHH19678.1| hypothetical protein EGK_02387 [Macaca mulatta]
Length = 527
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 123 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 178
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 179 RLKKCFRAGMKKE 191
>gi|449486195|ref|XP_002190881.2| PREDICTED: hepatocyte nuclear factor 4-alpha [Taeniopygia guttata]
Length = 431
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 27 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FNRQCVVDKDKRNQCRYC 82
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 83 RLKKCFRAGMKKE 95
>gi|17541658|ref|NP_501775.1| Protein NHR-4 [Caenorhabditis elegans]
gi|10720135|sp|O45436.2|NHR4_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-4
gi|4139072|gb|AAD03681.1| nuclear receptor NHR-4 [Caenorhabditis elegans]
gi|6434291|emb|CAB03044.2| Protein NHR-4 [Caenorhabditis elegans]
Length = 492
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 16/115 (13%)
Query: 11 IPPRYPQYFMSRP------DGRDVTSASRDRLLD------IPCKVCGDRSSGKHYGIYSC 58
+ PR+ +F DG D + ++ + L + + C VCGD + GKHYGI +C
Sbjct: 8 VDPRFDAFFKLEQIDDYKYDGADTSPSTSNGLPETSNGGRLICDVCGDVAFGKHYGINAC 67
Query: 59 DGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+GC GFF+RS+ R Y+C+ GD CP+ K HRN CR+CRL KCF MN D
Sbjct: 68 NGCKGFFRRSVWSRRQYSCRFGGD----CPVVKEHRNVCRSCRLKKCFEVGMNPD 118
>gi|410919441|ref|XP_003973193.1| PREDICTED: retinoic acid receptor gamma-A-like [Takifugu rubripes]
Length = 481
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ SC+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 76 PCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKN----CQINKVTRNRCQY 131
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 132 CRLQKCFEVGMSKE 145
>gi|335286925|ref|XP_003355219.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Sus scrofa]
Length = 497
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
R ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T
Sbjct: 2 RTQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRT 57
Query: 93 HRNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL KC M++D
Sbjct: 58 SRNRCQHCRLQKCLALGMSRD 78
>gi|222431989|gb|ACM50921.1| HNF4alpha12 [Mus musculus]
Length = 353
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 35 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 90
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 91 RLKKCFRAGMKKE 103
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.327 0.141 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,809,334,414
Number of Sequences: 23463169
Number of extensions: 67013525
Number of successful extensions: 187644
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7350
Number of HSP's successfully gapped in prelim test: 398
Number of HSP's that attempted gapping in prelim test: 172806
Number of HSP's gapped (non-prelim): 8052
length of query: 113
length of database: 8,064,228,071
effective HSP length: 81
effective length of query: 32
effective length of database: 6,163,711,382
effective search space: 197238764224
effective search space used: 197238764224
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 69 (31.2 bits)