BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16245
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 95.1 bits (235), Expect = 8e-21, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>pdb|2EBL|A Chain A, Solution Structure Of The Zinc Finger, C4-type Domain Of
Human Coup Transcription Factor 1
Length = 89
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 8 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 63
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 64 YCRLKKCLKVGMRRE 78
>pdb|3CBB|A Chain A, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
pdb|3CBB|B Chain B, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
Length = 78
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 3 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 58
Query: 101 RLNKCFMSAMNKD 113
RL KCF + M K+
Sbjct: 59 RLKKCFRAGMKKE 71
>pdb|1YNW|B Chain B, Crystal Structure Of Vitamin D Receptor And 9-Cis Retinoic
Acid Receptor Dna-Binding Domains Bound To A Dr3
Response Element
Length = 99
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 6 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 61
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 62 RYQKCLAMGMKRE 74
>pdb|1DSZ|B Chain B, Structure Of The RxrRAR DNA-Binding Domain Heterodimer In
Complex With The Retinoic Acid Response Element Dr1
Length = 85
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 8 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 63
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 64 RYQKCLAMGMKRE 76
>pdb|1R0N|A Chain A, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
Length = 81
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 6 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 61
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 62 RYQKCLAMGMKRE 74
>pdb|1BY4|A Chain A, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|B Chain B, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|C Chain C, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|D Chain D, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
Length = 82
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 8 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 63
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 64 RYQKCLAMGMKRE 76
>pdb|2NLL|A Chain A, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element Dna
Length = 66
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 1 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 56
Query: 101 RLNKCFMSAM 110
R KC M
Sbjct: 57 RYQKCLAMGM 66
>pdb|1RXR|A Chain A, High Resolution Solution Structure Of The Retinoid X
Receptor Dna Binding Domain, Nmr, 20 Structure
Length = 83
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 6 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 61
Query: 101 RLNKCFMSAMNKD 113
R K M ++
Sbjct: 62 RYQKALAMGMKRE 74
>pdb|1DSZ|A Chain A, Structure Of The RxrRAR DNA-Binding Domain Heterodimer In
Complex With The Retinoic Acid Response Element Dr1
Length = 86
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ +C+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 6 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKN----CIINKVTRNRCQY 61
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 62 CRLQKCFEVGMSKE 75
>pdb|1HRA|A Chain A, The Solution Structure Of The Human Retinoic Acid
Receptor- Beta Dna-Binding Domain
Length = 80
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D+SSG HYG+ +C+GC GFF+RSI +N +YTC + C I+K RN+C+
Sbjct: 7 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKN----CVINKVTRNRCQY 62
Query: 100 CRLNKCFMSAMNKD 113
CRL KCF M+K+
Sbjct: 63 CRLQKCFEVGMSKE 76
>pdb|3DZU|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 419
Score = 80.1 bits (196), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 10 QIPPRYPQYFMSRPDGRDVT-SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRS 68
++ P P Y+ + + + L+ I C+VCGD++SG HYG+++C+GC GFF+R+
Sbjct: 21 KVEPASPPYYSEKTQLYNKPHEEPSNSLMAIECRVCGDKASGFHYGVHACEGCKGFFRRT 80
Query: 69 IHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
I +Y + DL +C I K RN+C+ CR KC M+ +
Sbjct: 81 IRLKLIYD---RCDL--NCRIHKKSRNKCQYCRFQKCLAVGMSHN 120
>pdb|1R0O|A Chain A, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 86
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR+SGKHYG+YSC+GC GFFKR++ ++ Y C+ + C IDK RN+C+ C
Sbjct: 11 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRN----CIIDKRQRNRCQYC 66
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 67 RYQKCLTCGMKRE 79
>pdb|2HAN|A Chain A, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 93
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDR+SGKHYG+YSC+GC GFFKR++ ++ Y C+ + C IDK RN+C+ C
Sbjct: 13 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRN----CIIDKRQRNRCQYC 68
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 69 RYQKCLTCGMKRE 81
>pdb|1CIT|A Chain A, Dna-Binding Mechanism Of The Monomeric Orphan Nuclear
Receptor Ngfi-B
Length = 89
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD +S +HYG+ +C+GC GFFKR++ ++ Y C A D CP+DK RN+C+ C
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKD----CPVDKRRRNRCQFC 58
Query: 101 RLNKCFMSAMNKD 113
R KC M K+
Sbjct: 59 RFQKCLAVGMVKE 71
>pdb|1YNW|A Chain A, Crystal Structure Of Vitamin D Receptor And 9-Cis Retinoic
Acid Receptor Dna-Binding Domains Bound To A Dr3
Response Element
Length = 110
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DR + C VCGDR++G H+ +C+GC GFF+RS+ R ++TC A GD C I K +
Sbjct: 2 DRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCAANGD----CRITKDN 57
Query: 94 RNQCRACRLNKCFMSAMNKD 113
R C+ACRL +C M K+
Sbjct: 58 RRACQACRLKRCVDIGMMKE 77
>pdb|2A66|A Chain A, Human Liver Receptor Homologue Dna-Binding Domain (Hlrh-1
Dbd) In Complex With Dsdna From The Hcyp7a1 Promoter
Length = 113
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
D L+ C VCGD+ SG HYG+ +C+ C GFFKR++ N+ YTC + C IDKT
Sbjct: 5 DEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQN----CQIDKTQ 60
Query: 94 RNQCRACRLNKCFMSAM 110
R +C CR KC M
Sbjct: 61 RKRCPYCRFQKCLSVGM 77
>pdb|1LAT|A Chain A, Glucocorticoid Receptor MutantDNA COMPLEX
pdb|1LAT|B Chain B, Glucocorticoid Receptor MutantDNA COMPLEX
Length = 82
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D +SG HYG+ +C+GC FFKR++ Y CK +G C IDK R C A
Sbjct: 6 PCLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNYLCKYEGK----CIIDKIRRKNCPA 61
Query: 100 CRLNKCFMSAMNKD 113
CR KC + MN +
Sbjct: 62 CRYRKCLQAGMNLE 75
>pdb|2NLL|B Chain B, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element Dna
Length = 103
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR--VYTCKAQGDLKGHCPIDKTHRN 95
D C VCGD+++G HY +C+GC GFF+R+I +N Y+CK + G C IDK RN
Sbjct: 1 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYE----GKCVIDKVTRN 56
Query: 96 QCRACRLNKCFMSAMNKD 113
QC+ CR KC M D
Sbjct: 57 QCQECRFKKCIYVGMATD 74
>pdb|2FF0|A Chain A, Solution Structure Of Steroidogenic Factor 1 Dna Binding
Domain Bound To Its Target Sequence In The Inhibin
Alpha- Subunit Promoter
Length = 102
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 97
D C VCGD+ SG HYG+ +C+ C GFFKR++ N+ YTC C IDKT R +C
Sbjct: 1 DELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQS----CKIDKTQRKRC 56
Query: 98 RACRLNKCFMSAM 110
CR KC M
Sbjct: 57 PFCRFQKCLTVGM 69
>pdb|1HCP|A Chain A, Dna Recognition By The Oestrogen Receptor: From Solution
To The Crystal
Length = 76
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VC D +SG HYG++SC+GC FFKRSI + Y C A C IDK R C+AC
Sbjct: 7 CAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPAT----NQCTIDKNRRKSCQAC 62
Query: 101 RLNKCFMSAMNK 112
RL KC+ M K
Sbjct: 63 RLRKCYEVGMMK 74
>pdb|4AA6|E Chain E, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VC D +SG HYG++SC+GC FFKRSI + Y C A C IDK R C+AC
Sbjct: 4 CAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPAT----NQCTIDKNRRKSCQAC 59
Query: 101 RLNKCFMSAMNK 112
RL KC+ M K
Sbjct: 60 RLRKCYEVGMMK 71
>pdb|1HCQ|A Chain A, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
pdb|1HCQ|B Chain B, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
pdb|1HCQ|E Chain E, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
pdb|1HCQ|F Chain F, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
Length = 84
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VC D +SG HYG++SC+GC FFKRSI + Y C A C IDK R C+AC
Sbjct: 7 CAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPAT----NQCTIDKNRRKSCQAC 62
Query: 101 RLNKCFMSAMNK 112
RL KC+ M K
Sbjct: 63 RLRKCYEVGMMK 74
>pdb|4AA6|A Chain A, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|B Chain B, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|F Chain F, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VC D +SG HYG++SC+GC FFKRSI + Y C A C IDK R C+AC
Sbjct: 4 CAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPAT----NQCTIDKNRRKSCQAC 59
Query: 101 RLNKCFMSAMNK 112
RL KC+ M K
Sbjct: 60 RLRKCYEVGMMK 71
>pdb|1HLZ|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1HLZ|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|E Chain E, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|F Chain F, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1A6Y|A Chain A, Reverba Orphan Nuclear ReceptorDNA COMPLEX
pdb|1A6Y|B Chain B, Reverba Orphan Nuclear ReceptorDNA COMPLEX
Length = 94
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
+ + CKVCGD +SG HYG+ +C+GC GFF+RSI +N Y + + +C I + +RN+
Sbjct: 6 MVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNE---NCSIVRINRNR 62
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CR KC M++D
Sbjct: 63 CQQCRFKKCLSVGMSRD 79
>pdb|1KB2|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Mouse
Osteopontin (Spp) Response Element
pdb|1KB2|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Mouse
Osteopontin (Spp) Response Element
pdb|1KB4|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB4|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB6|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
pdb|1KB6|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
Length = 110
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
DR + C VCGDR++G H+ +C+GC GFF+RS+ R ++TC GD C I K +
Sbjct: 2 DRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGD----CRITKDN 57
Query: 94 RNQCRACRLNKCFMSAMNKD 113
R C+ACRL +C M K+
Sbjct: 58 RRHCQACRLKRCVDIGMMKE 77
>pdb|3M9E|A Chain A, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|B Chain B, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|E Chain E, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|F Chain F, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
Length = 105
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR--VYTCKAQGDLKGHCPIDKTHRN 95
D C VCGD+++G HY +C+GC GFF+R+I ++ Y+CK + G C IDK RN
Sbjct: 3 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYE----GKCIIDKVTRN 58
Query: 96 QCRACRLNKCFMSAMNKD 113
QC+ CR KC M D
Sbjct: 59 QCQECRFKKCIYVGMATD 76
>pdb|1R0N|B Chain B, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
pdb|1R0O|B Chain B, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 109
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 35 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 94
R+ + C VCGDR+SG HY +C+GC GFF+RS+ ++ VY CK C +D R
Sbjct: 3 RVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCK----FGRACEMDMYMR 58
Query: 95 NQCRACRLNKCFMSAMNKD 113
+C+ CRL KC M +
Sbjct: 59 RKCQECRLKKCLAVGMRPE 77
>pdb|2HAN|B Chain B, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 119
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 31 ASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 90
S R+ + C VCGDR+SG HY +C+GC GFF+RS+ ++ VY CK C +D
Sbjct: 1 GSAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCK----FGRACEMD 56
Query: 91 KTHRNQCRACRLNKCFMSAMNKD 113
R +C+ CRL KC M +
Sbjct: 57 MYMRRKCQECRLKKCLAVGMRPE 79
>pdb|1LO1|A Chain A, Estrogen Related Receptor 2 Dna Binding Domain In Complex
With Dna
Length = 98
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD +SG HYG+ SC+ C FFKR+I N Y+C A + C I K R C+AC
Sbjct: 7 CLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNE----CEITKRRRKSCQAC 62
Query: 101 RLNKCFMSAMNKD 113
R K M K+
Sbjct: 63 RFMKALKVGMLKE 75
>pdb|2ENV|A Chain A, Solution Sturcture Of The C4-Type Zinc Finger Domain From
Human Peroxisome Proliferator-Activated Receptor Delta
Length = 88
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD++SG HYG+++C+GC GFF+R+I Y + C I K +RN+C+
Sbjct: 8 MECRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYE-----KCERSCKIQKKNRNKCQ 62
Query: 99 ACRLNKCFMSAMNKD 113
CR KC M+ +
Sbjct: 63 YCRFQKCLALGMSHN 77
>pdb|1R4O|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4O|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4R|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D +SG HYG+ +C C FFKR++ Y C + D C IDK R C A
Sbjct: 6 PCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRND----CIIDKIRRKNCPA 61
Query: 100 CRLNKCFMSAMNKD 113
CR KC + MN +
Sbjct: 62 CRYRKCLQAGMNLE 75
>pdb|1R4R|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D +SG HYG+ +C C FFKR++ Y C + D C IDK R C A
Sbjct: 6 PCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRND----CIIDKIRRKNCPA 61
Query: 100 CRLNKCFMSAMNKD 113
CR KC + MN +
Sbjct: 62 CRYRKCLQAGMNLE 75
>pdb|1GLU|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1GLU|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 81
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
PC VC D +SG HYG+ +C C FFKR++ Y C + D C IDK R C A
Sbjct: 6 PCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRND----CIIDKIRRKNCPA 61
Query: 100 CRLNKCFMSAMNKD 113
CR KC + MN +
Sbjct: 62 CRYRKCLQAGMNLE 75
>pdb|1R4I|A Chain A, Crystal Structure Of Androgen Receptor Dna-Binding Domain
Bound To A Direct Repeat Response Element
pdb|1R4I|B Chain B, Crystal Structure Of Androgen Receptor Dna-Binding Domain
Bound To A Direct Repeat Response Element
Length = 105
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGD +SG HYG +C C FFKR+ + Y C ++ D C IDK R C +C
Sbjct: 10 CLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRND----CTIDKFRRKNCPSC 65
Query: 101 RLNKCFMSAMN 111
RL KC+ + M
Sbjct: 66 RLRKCYEAGMT 76
>pdb|4HN5|A Chain A, Gr Dna Binding Domain - Tslp Ngre Complex
pdb|4HN5|B Chain B, Gr Dna Binding Domain - Tslp Ngre Complex
Length = 117
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VC D +SG HYG+ +C C FFKR++ Y C + D C IDK R C AC
Sbjct: 32 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRND----CIIDKIRRKNCPAC 87
Query: 101 RLNKCFMSAMNKD 113
R KC + MN +
Sbjct: 88 RYRKCLQAGMNLE 100
>pdb|1GDC|A Chain A, Refined Solution Structure Of The Glucocorticoid Receptor
Dna-Binding Domain
Length = 72
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VC D +SG HYG+ +C C FFKR++ Y C + D C IDK R C AC
Sbjct: 2 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRND----CIIDKIRRKNCPAC 57
Query: 101 RLNKCFMSAMNKD 113
R KC + MN +
Sbjct: 58 RYRKCLQAGMNLE 70
>pdb|2GDA|A Chain A, Refined Solution Structure Of The Glucocorticoid Receptor
Dna-Binding Domain
Length = 72
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VC D +SG HYG+ +C C FFKR++ Y C + D C IDK R C AC
Sbjct: 2 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRND----CIIDKIRRKNCPAC 57
Query: 101 RLNKCFMSAMNKD 113
R KC + MN +
Sbjct: 58 RYRKCLQAGMNLE 70
>pdb|3G9P|B Chain B, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3G9P|A Chain A, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3FYL|A Chain A, Gr Dna Binding Domain:cgt Complex
pdb|3FYL|B Chain B, Gr Dna Binding Domain:cgt Complex
pdb|3G6P|A Chain A, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6P|B Chain B, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6Q|B Chain B, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6Q|A Chain A, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6R|B Chain B, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6R|A Chain A, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6U|A Chain A, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G6U|B Chain B, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G8U|A Chain A, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8U|B Chain B, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8X|A Chain A, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G8X|B Chain B, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G97|B Chain B, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G97|A Chain A, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G99|A Chain A, Gr Dna Binding Domain:pal Complex-9
pdb|3G99|B Chain B, Gr Dna Binding Domain:pal Complex-9
pdb|3G9I|A Chain A, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9I|B Chain B, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9J|A Chain A, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9J|B Chain B, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9M|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9M|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9O|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-9
pdb|3G9O|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-9
Length = 90
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VC D +SG HYG+ +C C FFKR++ Y C + D C IDK R C AC
Sbjct: 5 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRND----CIIDKIRRKNCPAC 60
Query: 101 RLNKCFMSAMNKD 113
R KC + MN +
Sbjct: 61 RYRKCLQAGMNLE 73
>pdb|1RGD|A Chain A, Structure Refinement Of The Glucocorticoid Receptor-Dna
Binding Domain From Nmr Data By Relaxation Matrix
Calculations
Length = 71
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VC D +SG HYG+ +C C FFKR++ Y C + D C IDK R C AC
Sbjct: 1 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRND----CIIDKIRRKNCPAC 56
Query: 101 RLNKCFMSAMNKD 113
R KC + MN +
Sbjct: 57 RYRKCLQAGMNLE 69
>pdb|2C7A|A Chain A, Structure Of The Progesterone Receptor-Dna Complex
pdb|2C7A|B Chain B, Structure Of The Progesterone Receptor-Dna Complex
Length = 78
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGD +SG HYG+ +C C FFKR++ Y C + D C +DK R C AC
Sbjct: 5 CLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYLCAGRND----CIVDKIRRKNCPAC 60
Query: 101 RLNKCFMSAM 110
RL KC + M
Sbjct: 61 RLRKCCQAGM 70
>pdb|4HN6|A Chain A, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
pdb|4HN6|B Chain B, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
Length = 114
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VC D +SG HYG+ +C C FFKR++ Y C GD C IDK R C AC
Sbjct: 29 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLC--AGD--NRCIIDKIRRKNCPAC 84
Query: 101 RLNKCFMSAMNKD 113
R KC + MN +
Sbjct: 85 RYRKCLQAGMNLE 97
>pdb|3G6T|A Chain A, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
pdb|3G6T|B Chain B, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
Length = 91
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIH-RNRVYTCKAQGDLKGHCPIDKTHRNQCRA 99
C VC D +SG HYG+ +C C FFKR++ R Y C + D C IDK R C A
Sbjct: 5 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRND----CIIDKIRRKNCPA 60
Query: 100 CRLNKCFMSAMNKD 113
CR KC + MN +
Sbjct: 61 CRYRKCLQAGMNLE 74
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 58 CDG-CSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLN 103
C G G + R+ Y+C A + CP N C+ C N
Sbjct: 399 CQGKADGLYPNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKCCTWN 445
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,525,175
Number of Sequences: 62578
Number of extensions: 133519
Number of successful extensions: 603
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 46
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)