BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16245
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9YGL3|NR2E1_ORYLA Nuclear receptor subfamily 2 group E member 1 OS=Oryzias latipes
GN=nr2e1 PE=2 SV=1
Length = 396
Score = 144 bits (363), Expect = 2e-34, Method: Composition-based stats.
Identities = 65/99 (65%), Positives = 75/99 (75%), Gaps = 7/99 (7%)
Query: 20 MSRPDGR-----DVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRV 74
MS+P G D+ + R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR+
Sbjct: 1 MSKPTGSTSGCLDILNVKSSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRI 60
Query: 75 YTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
Y CK+ +G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 61 YLCKSGS--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 97
>sp|Q9Y466|NR2E1_HUMAN Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 142 bits (359), Expect = 5e-34, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>sp|Q64104|NR2E1_MOUSE Nuclear receptor subfamily 2 group E member 1 OS=Mus musculus
GN=Nr2e1 PE=1 SV=1
Length = 385
Score = 142 bits (358), Expect = 6e-34, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>sp|Q91379|NR2E1_CHICK Nuclear receptor subfamily 2 group E member 1 OS=Gallus gallus
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 142 bits (358), Expect = 6e-34, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 72/94 (76%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS+P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSKPAG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>sp|P70052|NR2E1_XENLA Nuclear receptor subfamily 2 group E member 1 OS=Xenopus laevis
GN=nr2e1 PE=2 SV=1
Length = 386
Score = 140 bits (354), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/94 (69%), Positives = 71/94 (75%), Gaps = 8/94 (8%)
Query: 20 MSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
MS P G S R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 1 MSNPTG------STSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRSYVCKS 54
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+G CP+DKTHRNQCRACRL KC MNKD
Sbjct: 55 GN--QGGCPVDKTHRNQCRACRLKKCLEVNMNKD 86
>sp|O16845|TLL_DROVI Protein tailless OS=Drosophila virilis GN=tll PE=3 SV=1
Length = 450
Score = 126 bits (317), Expect = 3e-29, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 80
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 81 DKTHRNQCRACRLRKCFEVGMNKD 104
>sp|P18102|TLL_DROME Protein tailless OS=Drosophila melanogaster GN=tll PE=2 SV=1
Length = 452
Score = 126 bits (317), Expect = 3e-29, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
+AS L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +
Sbjct: 23 AASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVV 80
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DKTHRNQCRACRL KCF MNKD
Sbjct: 81 DKTHRNQCRACRLRKCFEVGMNKD 104
>sp|Q9XVV3|NHR67_CAEEL Nuclear hormone receptor family member nhr-67 OS=Caenorhabditis
elegans GN=nhr-67 PE=1 SV=1
Length = 416
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD-LKGHCPIDKTHR 94
LLD+ C+VC D SSGKHY I+SCDGC+GFFKRSI R+R Y CK +G +G C +DKTHR
Sbjct: 16 LLDVDCRVCEDHSSGKHYSIFSCDGCAGFFKRSIRRHRQYVCKNKGSPSEGQCKVDKTHR 75
Query: 95 NQCRACRLNKCFMSAMNKD 113
NQCRACRL KC MNKD
Sbjct: 76 NQCRACRLRKCLEIGMNKD 94
>sp|Q9QXZ7|NR2E3_MOUSE Photoreceptor-specific nuclear receptor OS=Mus musculus GN=Nr2e3
PE=1 SV=1
Length = 395
Score = 112 bits (280), Expect = 7e-25, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 38 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 94
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 95 ACRLKKCLQAGMNQD 109
>sp|Q9TTF0|NR2E3_BOVIN Photoreceptor-specific nuclear receptor OS=Bos taurus GN=NR2E3 PE=1
SV=2
Length = 411
Score = 112 bits (279), Expect = 8e-25, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>sp|Q9Y5X4|NR2E3_HUMAN Photoreceptor-specific nuclear receptor OS=Homo sapiens GN=NR2E3
PE=1 SV=1
Length = 410
Score = 111 bits (278), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 45 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 101
Query: 99 ACRLNKCFMSAMNKD 113
ACRL KC + MN+D
Sbjct: 102 ACRLKKCLQAGMNQD 116
>sp|P10588|NR2F6_HUMAN Nuclear receptor subfamily 2 group F member 6 OS=Homo sapiens
GN=NR2F6 PE=1 SV=2
Length = 404
Score = 103 bits (256), Expect = 4e-22, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>sp|P43136|NR2F6_MOUSE Nuclear receptor subfamily 2 group F member 6 OS=Mus musculus
GN=Nr2f6 PE=1 SV=2
Length = 390
Score = 102 bits (255), Expect = 5e-22, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>sp|O09017|NR2F6_RAT Nuclear receptor subfamily 2 group F member 6 OS=Rattus norvegicus
GN=Nr2f6 PE=2 SV=1
Length = 390
Score = 102 bits (254), Expect = 7e-22, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 96
L + C VCGD+SSGKHYG+++C+GC FFKR+I RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRTIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 97 CRACRLNKCFMSAMNKD 113
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>sp|P16376|7UP2_DROME Steroid receptor seven-up, isoform A OS=Drosophila melanogaster
GN=svp PE=2 SV=3
Length = 746
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 193 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 248
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RNQC+ CRL KC M ++
Sbjct: 249 RNQCQYCRLKKCLKMGMRRE 268
>sp|Q0VC20|RXRG_BOVIN Retinoic acid receptor RXR-gamma OS=Bos taurus GN=RXRG PE=2 SV=1
Length = 463
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>sp|Q5BJR8|RXRG_RAT Retinoic acid receptor RXR-gamma OS=Rattus norvegicus GN=Rxrg PE=2
SV=1
Length = 463
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 30 SASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 89
S S L+ C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C I
Sbjct: 128 STSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLI 183
Query: 90 DKTHRNQCRACRLNKCFMSAMNKD 113
DK RN+C+ CR KC + M ++
Sbjct: 184 DKRQRNRCQYCRYQKCLVMGMKRE 207
>sp|O09018|COT2_RAT COUP transcription factor 2 OS=Rattus norvegicus GN=Nr2f2 PE=1 SV=1
Length = 414
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>sp|P43135|COT2_MOUSE COUP transcription factor 2 OS=Mus musculus GN=Nr2f2 PE=1 SV=2
Length = 414
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>sp|P24468|COT2_HUMAN COUP transcription factor 2 OS=Homo sapiens GN=NR2F2 PE=1 SV=1
Length = 414
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 OS=Bos taurus GN=NR2F2 PE=2 SV=1
Length = 414
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>sp|O02279|NHR62_CAEEL Nuclear hormone receptor family member nhr-62 OS=Caenorhabditis
elegans GN=nhr-62 PE=2 SV=3
Length = 515
Score = 97.8 bits (242), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 33 RDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 92
++ +++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K
Sbjct: 90 KNSTINLVCVVCGDQAFGKHYGVNACNGCKGFFRRSVWHNRQYLCR----FEGRCAIAKE 145
Query: 93 HRNQCRACRLNKCFMSAMN 111
HRN CRACRL +CF++ MN
Sbjct: 146 HRNVCRACRLKQCFVAGMN 164
>sp|P28701|RXRG_CHICK Retinoic acid receptor RXR-gamma OS=Gallus gallus GN=RXRG PE=2 SV=1
Length = 467
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 143 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 198
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 199 RYQKCLAMGMKRE 211
>sp|Q6PH18|N2F1B_DANRE Nuclear receptor subfamily 2 group F member 1-B OS=Danio rerio
GN=nr2f1b PE=2 SV=1
Length = 389
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
+ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CP+D+ HRNQC+
Sbjct: 52 VECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPVDQHHRNQCQ 107
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 108 YCRLKKCLKVGMRRE 122
>sp|Q06726|NR2F5_DANRE Nuclear receptor subfamily 2 group F member 5 OS=Danio rerio
GN=nr2f5 PE=2 SV=1
Length = 403
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 8 CRQIPPRYPQYFMSRPDGRDVTSASRDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKR 67
C Q P P G D S D++ ++ C VCGD+SSGKHYG ++C+GC FFKR
Sbjct: 23 CSQEPGGTPGTPSGSTPGNDALSG--DKIPNVDCMVCGDKSSGKHYGQFTCEGCKSFFKR 80
Query: 68 SIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
S+ RN YTC+ D CPID+ HRNQC+ CRL KC M ++
Sbjct: 81 SVRRNLSYTCRGNRD----CPIDQHHRNQCQYCRLKKCLKVGMRRE 122
>sp|Q95K90|NR2C1_MACFA Nuclear receptor subfamily 2 group C member 1 OS=Macaca
fascicularis GN=NR2C1 PE=2 SV=1
Length = 603
Score = 95.5 bits (236), Expect = 9e-20, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 107 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 161
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 162 RNRCQYCRLQRCIAFGMKQD 181
>sp|P13056|NR2C1_HUMAN Nuclear receptor subfamily 2 group C member 1 OS=Homo sapiens
GN=NR2C1 PE=1 SV=2
Length = 603
Score = 95.5 bits (236), Expect = 9e-20, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 107 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 161
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 162 RNRCQYCRLQRCIAFGMKQD 181
>sp|Q505F1|NR2C1_MOUSE Nuclear receptor subfamily 2 group C member 1 OS=Mus musculus
GN=Nr2c1 PE=1 SV=3
Length = 590
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 9/98 (9%)
Query: 20 MSRPDGRDVTSASRD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
+S P + +T S D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY
Sbjct: 77 LSAPHLQLLTEKSPDQGPNKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVY 135
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+C+ D C I+K HRN+C+ CRL +C M +D
Sbjct: 136 SCRGSKD----CVINKHHRNRCQYCRLQRCIAFGMKQD 169
>sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus musculus GN=Rxra PE=1 SV=1
Length = 467
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>sp|Q5RCZ5|NR2C1_PONAB Nuclear receptor subfamily 2 group C member 1 OS=Pongo abelii
GN=NR2C1 PE=2 SV=1
Length = 601
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>sp|A2T929|RXRAA_DANRE Retinoic acid receptor RXR-alpha-A OS=Danio rerio GN=rxraa PE=2
SV=2
Length = 430
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 103 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CVIDKRQRNRCQYC 158
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 159 RYQKCLAMGMKRE 171
>sp|Q28CK1|NR2C1_XENTR Nuclear receptor subfamily 2 group C member 1 OS=Xenopus tropicalis
GN=nr2c1 PE=2 SV=1
Length = 636
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 14/107 (13%)
Query: 17 QYFMSRPD--GRDVTSASRDRLLDIP--------CKVCGDRSSGKHYGIYSCDGCSGFFK 66
Q F+S PD + + S + LD C VCGD++SG+HYG +C+GC GFFK
Sbjct: 118 QLFISTPDVPAQHIQILSDTQCLDQNLNKQLVELCVVCGDKASGRHYGAVTCEGCKGFFK 177
Query: 67 RSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
RSI +N VYTC+ D C I+K +RN+C+ CRL +C M +D
Sbjct: 178 RSIRKNLVYTCRGSKD----CVINKHYRNRCQYCRLQRCIALGMKQD 220
>sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alpha OS=Rattus norvegicus GN=Rxra PE=2
SV=1
Length = 467
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 101 RLNKCFMSAMNKD 113
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>sp|Q6GN21|N2C1A_XENLA Nuclear receptor subfamily 2 group C member 1-A OS=Xenopus laevis
GN=nr2c1-a PE=2 SV=1
Length = 637
Score = 94.7 bits (234), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG +C+GC GFFKRSI +N VYTC+ D C I+K +RN+C+ C
Sbjct: 152 CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKD----CVINKHYRNRCQYC 207
Query: 101 RLNKCFMSAMNKD 113
RL +C M +D
Sbjct: 208 RLQRCMSLGMKQD 220
>sp|A0JNE3|NR2C1_BOVIN Nuclear receptor subfamily 2 group C member 1 OS=Bos taurus
GN=NR2C1 PE=2 SV=1
Length = 608
Score = 94.7 bits (234), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 34 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 93
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 108 NKVFDL-CVVCGDKASGRHYGEVTCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 162
Query: 94 RNQCRACRLNKCFMSAMNKD 113
RN+C+ CRL +C M +D
Sbjct: 163 RNRCQYCRLQRCIAFGMKQD 182
>sp|Q8VIJ4|NR2C1_RAT Nuclear receptor subfamily 2 group C member 1 OS=Rattus norvegicus
GN=Nr2c1 PE=2 SV=1
Length = 590
Score = 94.7 bits (234), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 9/98 (9%)
Query: 20 MSRPDGRDVTSASRD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY 75
+S P + +T S D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY
Sbjct: 77 LSTPHLQLLTENSPDQGPNKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVY 135
Query: 76 TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
+C+ D C I+K HRN+C+ CRL +C M +D
Sbjct: 136 SCRGSKD----CIINKHHRNRCQYCRLQRCIAFGMKQD 169
>sp|Q5RAP4|RORG_PONAB Nuclear receptor ROR-gamma OS=Pongo abelii GN=RORC PE=2 SV=1
Length = 518
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 85 HCRLQKCLALGMSRD 99
>sp|P45446|RORB_RAT Nuclear receptor ROR-beta OS=Rattus norvegicus GN=Rorb PE=1 SV=3
Length = 470
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 19 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 74
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 75 HCRLQKCLALGMSRD 89
>sp|Q92753|RORB_HUMAN Nuclear receptor ROR-beta OS=Homo sapiens GN=RORB PE=2 SV=3
Length = 470
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 19 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 74
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 75 HCRLQKCLALGMSRD 89
>sp|Q8R1B8|RORB_MOUSE Nuclear receptor ROR-beta OS=Mus musculus GN=Rorb PE=2 SV=3
Length = 470
Score = 94.0 bits (232), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 19 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 74
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M++D
Sbjct: 75 HCRLQKCLALGMSRD 89
>sp|Q06725|N2F1A_DANRE Nuclear receptor subfamily 2 group F member 1-A OS=Danio rerio
GN=nr2f1a PE=2 SV=1
Length = 411
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 74 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 129
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 130 YCRLKKCLKVGMRRE 144
>sp|P49117|NR2C2_MOUSE Nuclear receptor subfamily 2 group C member 2 OS=Mus musculus
GN=Nr2c2 PE=1 SV=1
Length = 596
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 SQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>sp|P49116|NR2C2_HUMAN Nuclear receptor subfamily 2 group C member 2 OS=Homo sapiens
GN=NR2C2 PE=1 SV=1
Length = 596
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 NQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>sp|P55094|NR2C2_RAT Nuclear receptor subfamily 2 group C member 2 OS=Rattus norvegicus
GN=Nr2c2 PE=2 SV=1
Length = 596
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 14/91 (15%)
Query: 30 SASRDRLL---DIP-------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 79
SAS +RLL D+ C VCGD++SG+HYG SC+GC GFFKRS+ +N Y+C++
Sbjct: 96 SASVERLLGKADVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRS 155
Query: 80 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 110
D C I+K HRN+C+ CRL KC M
Sbjct: 156 SQD----CIINKHHRNRCQFCRLKKCLEMGM 182
>sp|Q66J63|N2C1B_XENLA Nuclear receptor subfamily 2 group C member 1-B OS=Xenopus laevis
GN=nr2c1-b PE=2 SV=1
Length = 637
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 41 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 100
C VCGD++SG+HYG +C+GC GFFKRSI +N +YTC+ D C I+K +RN+C+ C
Sbjct: 152 CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLIYTCRGSKD----CVINKHYRNRCQYC 207
Query: 101 RLNKCFMSAMNKD 113
RL +C M +D
Sbjct: 208 RLQRCISLGMKQD 220
>sp|Q9TTR8|COT1_BOVIN COUP transcription factor 1 OS=Bos taurus GN=NR2F1 PE=2 SV=1
Length = 424
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 85 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 140
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 141 YCRLKKCLKVGMRRE 155
>sp|Q60632|COT1_MOUSE COUP transcription factor 1 OS=Mus musculus GN=Nr2f1 PE=2 SV=2
Length = 422
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 83 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 138
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 139 YCRLKKCLKVGMRRE 153
>sp|P10589|COT1_HUMAN COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1
Length = 423
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 84 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 139
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 140 YCRLKKCLKVGMRRE 154
>sp|Q90733|COT2_CHICK COUP transcription factor 2 OS=Gallus gallus GN=NR2F2 PE=2 SV=1
Length = 410
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 98
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 73 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 128
Query: 99 ACRLNKCFMSAMNKD 113
CRL KC M ++
Sbjct: 129 YCRLKKCLKVGMRRE 143
>sp|Q91766|HNF4A_XENLA Hepatocyte nuclear factor 4-alpha OS=Xenopus laevis GN=hnf4a PE=2
SV=2
Length = 464
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 6/89 (6%)
Query: 27 DVTSASRDRLLDIP--CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 84
DVTS S + I C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 44 DVTSLSASNSIGINSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 85 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 113
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.141 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,670,945
Number of Sequences: 539616
Number of extensions: 1659732
Number of successful extensions: 5356
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4411
Number of HSP's gapped (non-prelim): 491
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)