Query psy16245
Match_columns 113
No_of_seqs 115 out of 1074
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:31:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cbb_A HNF-4-alpha, hepatocyte 100.0 2E-30 6.9E-35 165.2 5.2 70 40-113 2-71 (78)
2 2ebl_A COUP transcription fact 100.0 2.3E-30 7.8E-35 168.6 5.5 72 38-113 7-78 (89)
3 1dsz_B RXR-alpha, retinoic aci 100.0 2.3E-30 8E-35 167.3 4.3 72 38-113 5-76 (85)
4 1hcq_A Protein (estrogen recep 100.0 4.5E-30 1.5E-34 165.6 5.6 72 38-113 4-75 (84)
5 2han_A Protein ultraspiracle; 100.0 3.3E-30 1.1E-34 169.1 4.7 72 38-113 10-81 (93)
6 1ynw_B Retinoic acid receptor 100.0 6.1E-30 2.1E-34 169.5 5.7 72 38-113 3-74 (99)
7 1dsz_A RAR-alpha, retinoic aci 100.0 6.6E-30 2.2E-34 165.5 5.0 72 38-113 4-75 (86)
8 1cit_A NGFI-B, protein (orphan 100.0 8.3E-30 2.8E-34 166.0 5.3 71 39-113 1-71 (89)
9 3g9m_A Glucocorticoid receptor 100.0 2.9E-29 9.8E-34 163.7 5.3 71 39-113 3-73 (90)
10 2han_B Ecdysone receptor; tran 100.0 2.5E-29 8.6E-34 171.4 5.1 73 37-113 7-79 (119)
11 1kb2_A Vitamin D3 receptor; VD 100.0 2.9E-29 1E-33 169.0 5.3 72 38-113 6-77 (110)
12 4hn5_A Glucocorticoid receptor 100.0 3.3E-29 1.1E-33 170.3 5.4 72 38-113 29-100 (117)
13 1r4i_A Androgen receptor; AR, 100.0 3.2E-29 1.1E-33 167.6 5.3 72 38-113 7-78 (105)
14 2nll_B Protein (thyroid hormon 100.0 4.4E-29 1.5E-33 166.4 5.5 71 39-113 2-74 (103)
15 2a66_A Orphan nuclear receptor 100.0 2.7E-29 9.4E-34 169.8 4.2 72 38-113 9-80 (113)
16 1a6y_A Orphan nuclear receptor 100.0 3.9E-29 1.3E-33 164.2 4.6 71 39-113 8-79 (94)
17 1lo1_A Steroid hormone recepto 100.0 9.4E-30 3.2E-34 168.3 1.3 72 38-113 4-75 (98)
18 3dzy_D Peroxisome proliferator 99.9 1.3E-26 4.4E-31 185.0 5.4 72 36-113 48-120 (419)
19 3dzy_A Retinoic acid receptor 99.9 1.6E-26 5.4E-31 186.8 4.3 72 38-113 137-208 (467)
20 2lze_A A primordial catalytic 99.7 2.1E-19 7E-24 116.3 1.2 60 48-113 14-73 (87)
21 3dfx_A Trans-acting T-cell-spe 71.1 3.2 0.00011 24.5 2.6 31 38-68 7-41 (63)
22 2lze_A A primordial catalytic 69.9 3.4 0.00012 25.8 2.7 16 38-53 17-32 (87)
23 2vut_I AREA, nitrogen regulato 69.2 2.7 9.1E-05 22.9 1.8 30 39-68 2-35 (43)
24 1gnf_A Transcription factor GA 57.3 6.8 0.00023 21.6 2.1 30 39-68 5-38 (46)
25 2crr_A Stromal membrane-associ 50.8 6.1 0.00021 26.7 1.4 31 38-68 29-62 (141)
26 2crw_A ARF GAP 3, ADP-ribosyla 49.2 6.7 0.00023 26.9 1.4 31 38-68 29-62 (149)
27 4gat_A Nitrogen regulatory pro 47.4 12 0.0004 22.1 2.1 31 38-68 9-43 (66)
28 2iqj_A Stromal membrane-associ 46.1 5.5 0.00019 26.7 0.6 31 38-68 27-60 (134)
29 2olm_A Nucleoporin-like protei 43.5 5.9 0.0002 26.7 0.4 30 38-67 25-57 (140)
30 2kae_A GATA-type transcription 43.4 14 0.00048 22.1 2.1 31 38-69 8-44 (71)
31 2p57_A GTPase-activating prote 42.9 8 0.00027 26.4 1.0 31 38-68 37-70 (144)
32 3dwd_A ADP-ribosylation factor 42.7 7.6 0.00026 26.6 0.8 31 38-68 38-71 (147)
33 2owa_A Arfgap-like finger doma 42.2 6.9 0.00024 26.4 0.6 31 38-68 36-69 (138)
34 4hc9_A Trans-acting T-cell-spe 39.6 33 0.0011 22.2 3.6 33 38-70 59-95 (115)
35 2l43_A N-teminal domain from h 37.1 11 0.00038 23.2 0.9 28 38-65 25-52 (88)
36 3sub_A ADP-ribosylation factor 36.1 9.7 0.00033 26.5 0.6 30 38-67 22-54 (163)
37 3o47_A ADP-ribosylation factor 33.3 16 0.00054 27.2 1.4 31 38-68 37-70 (329)
38 1weo_A Cellulose synthase, cat 30.6 75 0.0026 20.0 4.0 10 38-47 16-25 (93)
39 1wfl_A Zinc finger protein 216 30.5 30 0.001 20.9 2.0 24 38-65 25-48 (74)
40 2pv0_B DNA (cytosine-5)-methyl 30.0 19 0.00066 28.3 1.4 35 38-72 50-87 (386)
41 2lbm_A Transcriptional regulat 29.9 17 0.00057 24.6 0.9 30 39-68 15-53 (142)
42 2ea5_A Cell growth regulator w 27.5 88 0.003 17.6 3.9 27 37-63 14-44 (68)
43 3lju_X ARF-GAP with dual PH do 23.8 22 0.00075 27.4 0.7 31 38-68 34-67 (386)
44 3jue_A Arfgap with coiled-coil 22.1 26 0.0009 26.5 0.8 31 38-68 45-78 (368)
45 3j21_e 50S ribosomal protein L 21.1 35 0.0012 19.9 1.0 24 37-62 16-39 (62)
46 2e6r_A Jumonji/ARID domain-con 21.0 30 0.001 21.3 0.8 54 38-106 16-69 (92)
47 2dj8_A Protein CBFA2T1; zinc f 20.8 72 0.0025 17.7 2.4 20 38-63 15-34 (60)
48 1x64_A Alpha-actinin-2 associa 20.5 1E+02 0.0035 17.9 3.2 13 38-50 25-37 (89)
49 3j20_P 30S ribosomal protein S 20.4 35 0.0012 19.5 0.9 23 39-61 19-42 (56)
No 1
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=99.96 E-value=2e-30 Score=165.15 Aligned_cols=70 Identities=56% Similarity=1.286 Sum_probs=66.3
Q ss_pred CceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 40 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 40 ~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|++..|+.|++|||+|||++||++|
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 71 (78)
T 3cbb_A 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFRAGMKKE 71 (78)
T ss_dssp BCTTTSSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCS----CCCCSTTTTTTCHHHHHHHHHHHTCCGG
T ss_pred CCeEeCCCCCceEeCCcchhhhceeeeEEEecccCccccccc----ccCcCccccccChhhhhHHHhHcCCCHH
Confidence 699999999999999999999999999999999999998864 7999999999999999999999999975
No 2
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=99.96 E-value=2.3e-30 Score=168.58 Aligned_cols=72 Identities=58% Similarity=1.290 Sum_probs=67.2
Q ss_pred CCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
+.+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|++..|+.|++|||+|||++||++|
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 78 (89)
T 2ebl_A 7 GIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANR----NCPIDQHHRNQCQYCRLKKCLKVGMRRE 78 (89)
T ss_dssp SCBCTTTCSBCCSEETTEECCHHHHHHHHHHHTTTCCCCCSSCS----CCCCCSSSSSCCSHHHHHHHHHHTCCHH
T ss_pred CCCCcEeCCCCcceEeCchhhHHhhhhhheeeeeccceecccCc----cCCcCccCccccccchHHHhhhccCCHH
Confidence 46799999999999999999999999999999999999998764 7999999999999999999999999864
No 3
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=99.96 E-value=2.3e-30 Score=167.26 Aligned_cols=72 Identities=51% Similarity=1.218 Sum_probs=67.5
Q ss_pred CCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
+.+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|++..|+.|++|||+|||++||++|
T Consensus 5 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 76 (85)
T 1dsz_B 5 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK----DCLIDKRQRNRCQYCRYQKCLAMGMKRE 76 (85)
T ss_dssp CEECTTTCCEESSEETTEECCHHHHHHHHHHHHHTCCCCCSSCS----CCCCCTTTTTTCHHHHHHHHHHTTCCGG
T ss_pred CCCCCEeCCCCCceeeCccchHHHHHHHHHhhccccceeecccc----cccccccccccCcchhHHHHhHcCCCHH
Confidence 46799999999999999999999999999999999999998864 6999999999999999999999999875
No 4
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=99.96 E-value=4.5e-30 Score=165.60 Aligned_cols=72 Identities=50% Similarity=1.074 Sum_probs=67.1
Q ss_pred CCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
..+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|++..|+.|++|||+|||++||++|
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 75 (84)
T 1hcq_A 4 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATN----QCTIDKNRRKSCQACRLRKCYEVGMMKG 75 (84)
T ss_dssp CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSS----CCCCSTTTTTTCHHHHHHHHHHHTCCC-
T ss_pred CCcCcEECCCCCCeeeCccchHHhhhhhhhccccccccccccCc----cCCcCCcCcccChhhhhHHHhHcCCCHH
Confidence 46899999999999999999999999999999999999998864 7999999999999999999999999975
No 5
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=99.96 E-value=3.3e-30 Score=169.06 Aligned_cols=72 Identities=49% Similarity=1.220 Sum_probs=67.4
Q ss_pred CCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
..+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|+...|+.|++|||+|||++||++|
T Consensus 10 ~~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 81 (93)
T 2han_A 10 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENR----NCIIDKRQRNRCQYCRYQKCLTCGMKRE 81 (93)
T ss_dssp CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSCS----CCCCSTTTGGGCHHHHHHHHHHHTCCGG
T ss_pred CCCCcEeCCCCcCeecCcchhHHHHHHHHhhhccccCcCcCCCC----cCCcCCCCCccCccccHHHHhHhCCCHH
Confidence 36799999999999999999999999999999999999998864 7999999999999999999999999875
No 6
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=99.96 E-value=6.1e-30 Score=169.48 Aligned_cols=72 Identities=51% Similarity=1.218 Sum_probs=66.6
Q ss_pred CCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
..+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|++..|+.|++|||+|||++||++|
T Consensus 3 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 74 (99)
T 1ynw_B 3 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK----DCLIDKRQRNRCQYCRYQKCLAMGMKRE 74 (99)
T ss_dssp --CBTTTBSCCCBCCTTSCBCSHHHHHHHHHHHTTCCCCCSSSS----CCCCCSTTSSSCHHHHHHHHHHTTCCST
T ss_pred CCCCceeCCCCcceeeCccchHHHHHHHHhhhccccccccCCCC----cccccccCCccCccccHHHHhHcCCCHH
Confidence 46899999999999999999999999999999999999998864 6999999999999999999999999975
No 7
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=99.96 E-value=6.6e-30 Score=165.49 Aligned_cols=72 Identities=54% Similarity=1.168 Sum_probs=66.3
Q ss_pred CCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
..+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|+...|+.|++|||+|||++||++|
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 75 (86)
T 1dsz_A 4 YKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDK----NCIINKVTRNRCQYCRLQKCFEVGMSKE 75 (86)
T ss_dssp --CCTTTCSCCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCS----CCCCSTTTGGGCHHHHHHHHHHTTCCGG
T ss_pred CCCCcEECCCccceeeCchhHHHHHHHHHHHhhcccceeeccCC----ccccCccccccchhhhHHHHHHhCCCHH
Confidence 35799999999999999999999999999999999999998764 7999999999999999999999999875
No 8
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.96 E-value=8.3e-30 Score=165.95 Aligned_cols=71 Identities=46% Similarity=1.120 Sum_probs=66.6
Q ss_pred CCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 39 ~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
++|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|++..|+.|++|||+|||++||++|
T Consensus 1 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 71 (89)
T 1cit_A 1 GRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANK----DCPVDKRRRNRCQFCRFQKCLAVGMVKE 71 (89)
T ss_dssp CCCSSSCCCCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSSS----CCCCSTTTTTTCHHHHHHHHHHTTCCGG
T ss_pred CCCeEeCCCCcceEeCccchhhhhhhceeeEEecceeeeccCC----ccccCCCCcccChhhhhHHHhHcCCCHH
Confidence 3699999999999999999999999999999999999998864 7999999999999999999999999875
No 9
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=99.95 E-value=2.9e-29 Score=163.65 Aligned_cols=71 Identities=42% Similarity=0.962 Sum_probs=67.1
Q ss_pred CCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 39 ~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
.+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|+...|+.|++|||+|||++||++|
T Consensus 3 ~~C~VCg~~a~g~hyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~----~C~i~~~~r~~C~~CR~~KCl~~GM~~~ 73 (90)
T 3g9m_A 3 HMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRN----DCIIDKIRRKNCPACRYRKCLQAGMNLE 73 (90)
T ss_dssp CBCTTTCSBCCEEETTEEECHHHHHHHHHHHHSCCCCCCSSSS----CCCCCTTGGGTCHHHHHHHHHHHTCCTT
T ss_pred CcCccCCCcCcccccCCccchhHhHHhhhhhhcCCceeCCCCC----ccccCcccccCCcchhhHHHHHcCCCHH
Confidence 5799999999999999999999999999999999999998764 7999999999999999999999999975
No 10
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=99.95 E-value=2.5e-29 Score=171.37 Aligned_cols=73 Identities=44% Similarity=1.022 Sum_probs=68.0
Q ss_pred CCCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 37 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 37 ~~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
...+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|+...|+.|++|||+|||++||+++
T Consensus 7 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 79 (119)
T 2han_B 7 QEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGR----ACEMDMYMRRKCQECRLKKCLAVGMRPE 79 (119)
T ss_dssp CSCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHTTCCCCCSSCS----CCCCSTTGGGTCHHHHHHHHHHTTCCGG
T ss_pred CCCcCeEeCCcCCcceECchhHHhhHHhhhhheEecccccccccc----ccccCccccccchhhHHHHHHHhCCCHH
Confidence 357899999999999999999999999999999999999998864 6999999999999999999999999874
No 11
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=99.95 E-value=2.9e-29 Score=168.99 Aligned_cols=72 Identities=44% Similarity=1.061 Sum_probs=67.1
Q ss_pred CCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
+.+|.|||+.++|+||||.+|++|++||||++..+..|.|..++ +|.|++..|+.|++|||+|||++||++|
T Consensus 6 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~Cr~CR~~KCl~vGM~~~ 77 (110)
T 1kb2_A 6 PRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNG----DCRITKDNRRHCQACRLKRCVDIGMMKE 77 (110)
T ss_dssp -CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCS----CCCCCTTTTTTCHHHHHHHHHHTTCCGG
T ss_pred CCCCcEeCCCCCceEeCchhHhhhhhhheeeeecccceeeCCCC----CccCCcccceecccccHhhhhhcCCcHH
Confidence 46799999999999999999999999999999999999998864 7999999999999999999999999875
No 12
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=99.95 E-value=3.3e-29 Score=170.27 Aligned_cols=72 Identities=42% Similarity=0.947 Sum_probs=67.2
Q ss_pred CCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
+.+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|+...|+.|++|||+|||++||++|
T Consensus 29 ~~~C~VCgd~a~G~HyGv~sC~aCk~FFRRsv~~~~~y~C~~~~----~C~i~~~~r~~Cr~CRl~KCl~vGM~~~ 100 (117)
T 4hn5_A 29 PKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRN----DCIIDKIRRKNCPACRYRKCLQAGMNLE 100 (117)
T ss_dssp -CBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSS----CCCCSTTTTTTCHHHHHHHHHHHTCCTT
T ss_pred CCcCCcCCCcCcccccCCcccchhhhhhhcceecCCceecCCCC----ccccCcccccCCcccchHHHhHcCCCHH
Confidence 46799999999999999999999999999999999999998764 7999999999999999999999999975
No 13
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.95 E-value=3.2e-29 Score=167.57 Aligned_cols=72 Identities=40% Similarity=0.977 Sum_probs=67.5
Q ss_pred CCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
..+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|++..|+.|++|||+|||++||+++
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 78 (105)
T 1r4i_A 7 QKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRN----DCTIDKFRRKNCPSCRLRKCYEAGMTLG 78 (105)
T ss_dssp CCBCSSSCSBEEEEETTEEEEHHHHHHHHHHHTSCCCCCCSSSS----CCCCCTTTTTTCHHHHHHHHHHHTCCSC
T ss_pred CCCCcEeCCCCCceEeCCcchhhhhhhhceeEEecCceeeccCC----ccccCccccccchhchHHHHHhhhcccc
Confidence 46899999999999999999999999999999999999998864 6999999999999999999999999875
No 14
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=99.95 E-value=4.4e-29 Score=166.40 Aligned_cols=71 Identities=49% Similarity=1.138 Sum_probs=65.9
Q ss_pred CCceecCCCCcceeeccccchhhHHHHHHHhhcCc--ccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR--VYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 39 ~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~--~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
++|.|||++++|+||||.+|++|++||||++..+. .|.|..++ +|.|+...|+.|++|||+|||++||++|
T Consensus 2 ~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 74 (103)
T 2nll_B 2 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEG----KCVIDKVTRNQCQECRFKKCIYVGMATD 74 (103)
T ss_dssp CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCGGGCCCSSCT----TCCCSTTTTTSCHHHHHHHHHHTTCCGG
T ss_pred CCCeEeCCcCcCeecCcccHHHhhhhheecccccccchhhhhccC----CcCcCccCccccchhhhHhhhHhCCCHH
Confidence 57999999999999999999999999999999875 68998764 7999999999999999999999999875
No 15
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=99.95 E-value=2.7e-29 Score=169.79 Aligned_cols=72 Identities=46% Similarity=1.089 Sum_probs=67.1
Q ss_pred CCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
..+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|+...|+.|++|||+|||++||+++
T Consensus 9 ~~~C~VCgd~a~G~HyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~R~~Cr~CR~~KCl~vGM~~~ 80 (113)
T 2a66_A 9 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQ----NCQIDKTQRKRCPYCRFQKCLSVGMKLE 80 (113)
T ss_dssp -CBCTTTCCBEEEEETTEEEEHHHHHHHHHHHHTTCCCCCSSCS----CCCCCTTTTTTCHHHHHHHHHHTTCCGG
T ss_pred CCCCcEeCCCCcceeeCcccHHHHHHHHhhhhhccccccccccc----cCCcCCCccccccchhHHHHhHhCCCHH
Confidence 46899999999999999999999999999999999999998864 7999999999999999999999999874
No 16
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=99.95 E-value=3.9e-29 Score=164.25 Aligned_cols=71 Identities=48% Similarity=1.139 Sum_probs=66.3
Q ss_pred CCceecCCCCcceeeccccchhhHHHHHHHhhcCccc-ccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 39 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY-TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 39 ~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~-~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
.+|.|||++++|+||||.+|++|++||||++..+..| .|..++ +|.|+...|+.|++|||+|||++||++|
T Consensus 8 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 79 (94)
T 1a6y_A 8 LLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNE----NCSIVRINRNRCQQCRFKKCLSVGMSRD 79 (94)
T ss_dssp CBCTTTSSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCCSSTT----CCCCCTTTTTSCHHHHHHHHTTTTCCST
T ss_pred CcCcEeCCCCcceEeCccchhhhhhehheeeecccceEEccCCC----CCccCccccccccchhHHHhhHccCCHH
Confidence 5799999999999999999999999999999998888 598764 7999999999999999999999999975
No 17
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=99.95 E-value=9.4e-30 Score=168.28 Aligned_cols=72 Identities=46% Similarity=0.945 Sum_probs=67.3
Q ss_pred CCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
..+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|++..|+.|++|||+|||++||++|
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 75 (98)
T 1lo1_A 4 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATN----ECEITKRRRKSCQACRFMKALKVGMLKE 75 (98)
T ss_dssp CCEETTTTEECSEESSSSEECHHHHHHHHHHHHTTCCCCCSSCS----CCCCCHHHHHHCHHHHHHHHHHHTCCGG
T ss_pred CCCCcEeCCCCcCeeeCccchhhhhhhheeeecccCccccCccc----cccccccccccccchhHHHHhHcCCCHH
Confidence 46899999999999999999999999999999999999998864 6999998899999999999999999875
No 18
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.93 E-value=1.3e-26 Score=184.96 Aligned_cols=72 Identities=46% Similarity=1.137 Sum_probs=64.1
Q ss_pred CCCCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccc-cccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 36 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYT-CKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 36 ~~~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~-C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
.....|.|||++++|+||||.+|++|++||||++..+..|. |. ++|.+++..|++|++|||+||+++||+++
T Consensus 48 ~~~~~C~vC~~~~~g~hygv~~C~~C~~FFrR~~~~~~~~~~c~------~~C~~~~~~r~~C~~CR~~kCl~~GM~~~ 120 (419)
T 3dzy_D 48 LMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCD------LNCRIHKKSRNKCQYCRFQKCLAVGMSHN 120 (419)
T ss_dssp --CCCCSSSCSCCCSBCSSSBCCHHHHHHHHHHHTTTCCCCCCC------SCCCCCTTGGGTCHHHHHHHHHHTTCCGG
T ss_pred CCCCcCeECCCcCCCCccCcccchhhhHHHccchhccccccccc------CCCCcccccCccchhhhHHHHhhcccchh
Confidence 34568999999999999999999999999999999888774 53 26999999999999999999999999874
No 19
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.92 E-value=1.6e-26 Score=186.83 Aligned_cols=72 Identities=51% Similarity=1.218 Sum_probs=67.3
Q ss_pred CCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
...|.|||++++|+||||.+|++|++||||++..+..|.|+.++ +|.+++..|++|++|||+||+++||+++
T Consensus 137 ~~~C~VCg~~a~g~hygv~sC~~Ck~FFrR~~~~~~~~~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 208 (467)
T 3dzy_A 137 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK----DCLIDKRQRNRCQYCRYQKCLAMGMKRE 208 (467)
T ss_dssp CEECTTTSSEECSEETTEECCHHHHHHHHHHHHTTCCCCCSSSS----CCCCCSSSSSSCHHHHHHHHHHTTCCGG
T ss_pred CCcceeCCCCCCCCcCCCcchhhhhHhccccccCCCceeCCCCC----CCCCCcccccccccchhhhhhhccccch
Confidence 45699999999999999999999999999999999999998864 7999999999999999999999999864
No 20
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.74 E-value=2.1e-19 Score=116.27 Aligned_cols=60 Identities=20% Similarity=0.355 Sum_probs=48.6
Q ss_pred CcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHHHhccCCC
Q psy16245 48 SSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 113 (113)
Q Consensus 48 ~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~ 113 (113)
+.+.||+++ |.+|++||||++ .+..|.|+.++ +|.|++..|++|++|||+|||+|||+.+
T Consensus 14 ~~g~h~c~v-Cgd~asfFRRt~-~~~~y~C~~~~----~C~i~~~~R~~C~~CR~qKCl~VgM~~~ 73 (87)
T 2lze_A 14 RGGKHICAI-CGNNAEDYKHTD-MDLTYTDRDYK----NCESYHKCSDLCQYCRYQKDLAIHHQHH 73 (87)
T ss_dssp SCCSSSCSS-SSSSSSSCTTTT-TSCTTTSCCCC----CCCCSSCCSSSCSGGGTSCCHHHHCSSC
T ss_pred CCCCEEccC-CCCccceECccc-CCCeeEcCCCC----ccccCCCccCcCCcccChhhccCcCEec
Confidence 345555553 666888999985 56778998764 7999999999999999999999999753
No 21
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=71.09 E-value=3.2 Score=24.48 Aligned_cols=31 Identities=19% Similarity=0.549 Sum_probs=23.2
Q ss_pred CCCceecCCCCcc----eeeccccchhhHHHHHHH
Q psy16245 38 DIPCKVCGDRSSG----KHYGIYSCDGCSGFFKRS 68 (113)
Q Consensus 38 ~~~C~VCg~~~~g----~hyGv~sC~aC~~FFrR~ 68 (113)
...|..|+...+- -..|...|+||..+|+..
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~ 41 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH 41 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHH
T ss_pred CCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHc
Confidence 4679999876542 245778999999999765
No 22
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=69.88 E-value=3.4 Score=25.82 Aligned_cols=16 Identities=19% Similarity=0.588 Sum_probs=13.0
Q ss_pred CCCceecCCCCcceee
Q psy16245 38 DIPCKVCGDRSSGKHY 53 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hy 53 (113)
...|.||+|.+++++-
T Consensus 17 ~h~c~vCgd~asfFRR 32 (87)
T 2lze_A 17 KHICAICGNNAEDYKH 32 (87)
T ss_dssp SSSCSSSSSSSSSCTT
T ss_pred CEEccCCCCccceECc
Confidence 4579999999988754
No 23
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=69.20 E-value=2.7 Score=22.92 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=20.3
Q ss_pred CCceecCCCCcc----eeeccccchhhHHHHHHH
Q psy16245 39 IPCKVCGDRSSG----KHYGIYSCDGCSGFFKRS 68 (113)
Q Consensus 39 ~~C~VCg~~~~g----~hyGv~sC~aC~~FFrR~ 68 (113)
..|..|+...+- -..|...|+||..+|+..
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 35 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLH 35 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHh
Confidence 357777765432 234667899999988754
No 24
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=57.34 E-value=6.8 Score=21.56 Aligned_cols=30 Identities=27% Similarity=0.686 Sum_probs=20.3
Q ss_pred CCceecCCCCcc----eeeccccchhhHHHHHHH
Q psy16245 39 IPCKVCGDRSSG----KHYGIYSCDGCSGFFKRS 68 (113)
Q Consensus 39 ~~C~VCg~~~~g----~hyGv~sC~aC~~FFrR~ 68 (113)
..|..|+...+- -..|...|++|..+|+..
T Consensus 5 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 38 (46)
T 1gnf_A 5 RECVNCGATATPLWRRDRTGHYLCNACGLYHKMN 38 (46)
T ss_dssp CCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHT
T ss_pred CCCCCcCCCCCCcCccCCCCCccchHHHHHHHHc
Confidence 458888765432 124567899999988653
No 25
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.80 E-value=6.1 Score=26.73 Aligned_cols=31 Identities=19% Similarity=0.616 Sum_probs=25.3
Q ss_pred CCCceecCCCCc---ceeeccccchhhHHHHHHH
Q psy16245 38 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKRS 68 (113)
Q Consensus 38 ~~~C~VCg~~~~---g~hyGv~sC~aC~~FFrR~ 68 (113)
+..|.-||.+.. ...||++.|-.|.+..|..
T Consensus 29 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (141)
T 2crr_A 29 NKYCADCEAKGPRWASWNIGVFICIRCAGIHRNL 62 (141)
T ss_dssp GSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHH
T ss_pred CCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcC
Confidence 457999997654 4699999999999998764
No 26
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.15 E-value=6.7 Score=26.86 Aligned_cols=31 Identities=29% Similarity=0.747 Sum_probs=25.7
Q ss_pred CCCceecCCCCc---ceeeccccchhhHHHHHHH
Q psy16245 38 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKRS 68 (113)
Q Consensus 38 ~~~C~VCg~~~~---g~hyGv~sC~aC~~FFrR~ 68 (113)
+..|.-||.+.. ...||++.|-.|.+..|..
T Consensus 29 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (149)
T 2crw_A 29 NKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSL 62 (149)
T ss_dssp TSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHH
T ss_pred CCcCCCCcCCCCCcEEeccCEEEchhcchhhccC
Confidence 567999997654 4689999999999998764
No 27
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=47.39 E-value=12 Score=22.13 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=22.3
Q ss_pred CCCceecCCCCcc----eeeccccchhhHHHHHHH
Q psy16245 38 DIPCKVCGDRSSG----KHYGIYSCDGCSGFFKRS 68 (113)
Q Consensus 38 ~~~C~VCg~~~~g----~hyGv~sC~aC~~FFrR~ 68 (113)
+..|..|+...+- -..|...|++|..+|+..
T Consensus 9 ~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~ 43 (66)
T 4gat_A 9 PTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLH 43 (66)
T ss_dssp SCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHc
Confidence 4679999876543 234567899999998754
No 28
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=46.10 E-value=5.5 Score=26.72 Aligned_cols=31 Identities=19% Similarity=0.614 Sum_probs=25.4
Q ss_pred CCCceecCCCCc---ceeeccccchhhHHHHHHH
Q psy16245 38 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKRS 68 (113)
Q Consensus 38 ~~~C~VCg~~~~---g~hyGv~sC~aC~~FFrR~ 68 (113)
+..|.-||.+.. ...||++.|-.|.+..|..
T Consensus 27 N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~l 60 (134)
T 2iqj_A 27 NKFCADCQSKGPRWASWNIGVFICIRCAGIHRNL 60 (134)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred CCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcC
Confidence 467999998764 4699999999999998764
No 29
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=43.52 E-value=5.9 Score=26.75 Aligned_cols=30 Identities=27% Similarity=0.690 Sum_probs=24.7
Q ss_pred CCCceecCCCCc---ceeeccccchhhHHHHHH
Q psy16245 38 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKR 67 (113)
Q Consensus 38 ~~~C~VCg~~~~---g~hyGv~sC~aC~~FFrR 67 (113)
+..|.-||.+.. ...||++.|-.|.+..|.
T Consensus 25 N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~ 57 (140)
T 2olm_A 25 NRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRG 57 (140)
T ss_dssp GGSCTTTCSSCCCEEETTTTEEECHHHHHHHTT
T ss_pred CCcCCCCCCCCCCceeeccCEEEchhccchhcc
Confidence 467999997654 368999999999998765
No 30
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=43.36 E-value=14 Score=22.14 Aligned_cols=31 Identities=16% Similarity=0.457 Sum_probs=21.5
Q ss_pred CCCceecCCCCcc------eeeccccchhhHHHHHHHh
Q psy16245 38 DIPCKVCGDRSSG------KHYGIYSCDGCSGFFKRSI 69 (113)
Q Consensus 38 ~~~C~VCg~~~~g------~hyGv~sC~aC~~FFrR~v 69 (113)
...|..|+...+- ..-| ..|+||..+|+..-
T Consensus 8 ~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~ 44 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYN 44 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhC
Confidence 3579999876542 1224 68999999997643
No 31
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=42.86 E-value=8 Score=26.36 Aligned_cols=31 Identities=29% Similarity=0.801 Sum_probs=25.5
Q ss_pred CCCceecCCCCc---ceeeccccchhhHHHHHHH
Q psy16245 38 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKRS 68 (113)
Q Consensus 38 ~~~C~VCg~~~~---g~hyGv~sC~aC~~FFrR~ 68 (113)
+..|.-||.+.. ...||++.|-.|.+..|..
T Consensus 37 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 70 (144)
T 2p57_A 37 NKACFDCGAKNPSWASITYGVFLCIDCSGVHRSL 70 (144)
T ss_dssp GGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHH
T ss_pred CCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCC
Confidence 567999998654 4699999999999998764
No 32
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=42.70 E-value=7.6 Score=26.61 Aligned_cols=31 Identities=32% Similarity=0.669 Sum_probs=25.6
Q ss_pred CCCceecCCCCc---ceeeccccchhhHHHHHHH
Q psy16245 38 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKRS 68 (113)
Q Consensus 38 ~~~C~VCg~~~~---g~hyGv~sC~aC~~FFrR~ 68 (113)
+..|.-||.+.. ...||++.|-.|.+..|..
T Consensus 38 N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~L 71 (147)
T 3dwd_A 38 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGL 71 (147)
T ss_dssp TTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred CCccCCCCCCCCCeEEecccEeEhHhhChHHhcC
Confidence 567999998764 4689999999999988753
No 33
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=42.16 E-value=6.9 Score=26.42 Aligned_cols=31 Identities=19% Similarity=0.580 Sum_probs=25.2
Q ss_pred CCCceecCCCCc---ceeeccccchhhHHHHHHH
Q psy16245 38 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKRS 68 (113)
Q Consensus 38 ~~~C~VCg~~~~---g~hyGv~sC~aC~~FFrR~ 68 (113)
+..|.-||.+.. ...||++.|-.|.+..|..
T Consensus 36 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 69 (138)
T 2owa_A 36 NRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKM 69 (138)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTT
T ss_pred CCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCC
Confidence 467999997764 3689999999999987753
No 34
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=39.56 E-value=33 Score=22.21 Aligned_cols=33 Identities=18% Similarity=0.466 Sum_probs=24.3
Q ss_pred CCCceecCCCCcc----eeeccccchhhHHHHHHHhh
Q psy16245 38 DIPCKVCGDRSSG----KHYGIYSCDGCSGFFKRSIH 70 (113)
Q Consensus 38 ~~~C~VCg~~~~g----~hyGv~sC~aC~~FFrR~v~ 70 (113)
...|..|+...+- -..|...|++|..+|+..-.
T Consensus 59 ~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 59 GTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 95 (115)
T ss_dssp TCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred cccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCC
Confidence 4679999876642 34566789999999987643
No 35
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=37.05 E-value=11 Score=23.18 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=19.4
Q ss_pred CCCceecCCCCcceeeccccchhhHHHH
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFF 65 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FF 65 (113)
...|.||++..+...-.++.|..|...|
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~f 52 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAV 52 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCC
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchh
Confidence 4679999987643334567888886544
No 36
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=36.09 E-value=9.7 Score=26.52 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=24.9
Q ss_pred CCCceecCCCCc---ceeeccccchhhHHHHHH
Q psy16245 38 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKR 67 (113)
Q Consensus 38 ~~~C~VCg~~~~---g~hyGv~sC~aC~~FFrR 67 (113)
+..|.-||.+.. ...||++.|-.|.+..|.
T Consensus 22 N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~ 54 (163)
T 3sub_A 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRS 54 (163)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCccccCCCCCCCeEEecCCeeEHHhhhHHhcC
Confidence 467999998764 468999999999998775
No 37
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=33.33 E-value=16 Score=27.18 Aligned_cols=31 Identities=32% Similarity=0.654 Sum_probs=25.9
Q ss_pred CCCceecCCCCcc---eeeccccchhhHHHHHHH
Q psy16245 38 DIPCKVCGDRSSG---KHYGIYSCDGCSGFFKRS 68 (113)
Q Consensus 38 ~~~C~VCg~~~~g---~hyGv~sC~aC~~FFrR~ 68 (113)
+..|.-||.+... ..||++.|-.|.+..|..
T Consensus 37 n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~ 70 (329)
T 3o47_A 37 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGL 70 (329)
T ss_dssp TTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHH
T ss_pred CCcCCCCCCCCCCeEEecCCEEEChhhhhhhccc
Confidence 5679999987654 699999999999998764
No 38
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=30.56 E-value=75 Score=19.97 Aligned_cols=10 Identities=40% Similarity=1.149 Sum_probs=8.3
Q ss_pred CCCceecCCC
Q psy16245 38 DIPCKVCGDR 47 (113)
Q Consensus 38 ~~~C~VCg~~ 47 (113)
..+|+|||+.
T Consensus 16 ~qiCqiCGD~ 25 (93)
T 1weo_A 16 GQFCEICGDQ 25 (93)
T ss_dssp SCBCSSSCCB
T ss_pred CCccccccCc
Confidence 4689999986
No 39
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=30.49 E-value=30 Score=20.93 Aligned_cols=24 Identities=21% Similarity=0.724 Sum_probs=14.8
Q ss_pred CCCceecCCCCcceeeccccchhhHHHH
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFF 65 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FF 65 (113)
...|..|+....-.- ..|+ |..+|
T Consensus 25 ~nRC~~CrKkvgL~g---f~Cr-Cg~~F 48 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG---FDCR-CGNLF 48 (74)
T ss_dssp TTBCSSSCCBCGGGC---EECT-TSCEE
T ss_pred CCcChhhCCcccccC---eecC-CCCEe
Confidence 346999988753332 3677 76544
No 40
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=30.00 E-value=19 Score=28.28 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=26.6
Q ss_pred CCCceecCCCCcc---eeeccccchhhHHHHHHHhhcC
Q psy16245 38 DIPCKVCGDRSSG---KHYGIYSCDGCSGFFKRSIHRN 72 (113)
Q Consensus 38 ~~~C~VCg~~~~g---~hyGv~sC~aC~~FFrR~v~~~ 72 (113)
...|..||..... -.|.+..|..|+.+|.......
T Consensus 50 e~~C~~CG~~~~~~~HPl~~v~lC~~Ck~~y~~~~f~~ 87 (386)
T 2pv0_B 50 EDICICCGSLQVHTQHPLFEGGICAPCKDKFLDALFLY 87 (386)
T ss_dssp GGSBTTTCCSCCCSBCSSBSSBCCHHHHHHHHTTTTCB
T ss_pred cceeCCCCCcCccccCCCcCcchhhHHHHHHhccCccc
Confidence 3479999986532 3589999999999997765543
No 41
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=29.93 E-value=17 Score=24.64 Aligned_cols=30 Identities=20% Similarity=0.774 Sum_probs=23.9
Q ss_pred CCceecCCCCc-------cee--eccccchhhHHHHHHH
Q psy16245 39 IPCKVCGDRSS-------GKH--YGIYSCDGCSGFFKRS 68 (113)
Q Consensus 39 ~~C~VCg~~~~-------g~h--yGv~sC~aC~~FFrR~ 68 (113)
..|..||...+ ..| +++..|..|+.||...
T Consensus 15 i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~ 53 (142)
T 2lbm_A 15 VSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSD 53 (142)
T ss_dssp CBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHS
T ss_pred CEecCCCCccccccccchhcCCCccccccHHHHHHHhcC
Confidence 46999998763 346 9999999999988654
No 42
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.53 E-value=88 Score=17.63 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=16.8
Q ss_pred CCCCceecCCCCcceee---ccc-cchhhHH
Q psy16245 37 LDIPCKVCGDRSSGKHY---GIY-SCDGCSG 63 (113)
Q Consensus 37 ~~~~C~VCg~~~~g~hy---Gv~-sC~aC~~ 63 (113)
....|.||-+.....-+ |=. .|..|..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~ 44 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK 44 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHH
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHh
Confidence 35679999876544222 222 6888875
No 43
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=23.77 E-value=22 Score=27.37 Aligned_cols=31 Identities=26% Similarity=0.729 Sum_probs=25.3
Q ss_pred CCCceecCCCCc---ceeeccccchhhHHHHHHH
Q psy16245 38 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKRS 68 (113)
Q Consensus 38 ~~~C~VCg~~~~---g~hyGv~sC~aC~~FFrR~ 68 (113)
+..|.-||.+.. ...||+..|-.|.+..|..
T Consensus 34 N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l 67 (386)
T 3lju_X 34 NARCADCGAPDPDWASYTLGVFICLSCSGIHRNI 67 (386)
T ss_dssp GSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC
T ss_pred CCcCccCCCCCCCeEEecccEEEhhhhchHhhCC
Confidence 457999998764 3689999999999987754
No 44
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=22.15 E-value=26 Score=26.51 Aligned_cols=31 Identities=23% Similarity=0.584 Sum_probs=25.2
Q ss_pred CCCceecCCCCc---ceeeccccchhhHHHHHHH
Q psy16245 38 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKRS 68 (113)
Q Consensus 38 ~~~C~VCg~~~~---g~hyGv~sC~aC~~FFrR~ 68 (113)
+..|.-|+.+.. ...||++.|-.|.+..|..
T Consensus 45 n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~l 78 (368)
T 3jue_A 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSL 78 (368)
T ss_dssp TTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred cCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhcc
Confidence 457999998764 4699999999999987653
No 45
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.08 E-value=35 Score=19.95 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=20.0
Q ss_pred CCCCceecCCCCcceeeccccchhhH
Q psy16245 37 LDIPCKVCGDRSSGKHYGIYSCDGCS 62 (113)
Q Consensus 37 ~~~~C~VCg~~~~g~hyGv~sC~aC~ 62 (113)
.+.+|..||..+ +|..-..|.+|.
T Consensus 16 tH~lCrRCG~~s--yH~qK~~Ca~CG 39 (62)
T 3j21_e 16 THIRCRRCGRVS--YNVKKGYCAACG 39 (62)
T ss_dssp CCCBCSSSCSBC--EETTTTEETTTC
T ss_pred ceeeecccCcch--hccccccccccC
Confidence 467899999885 888888888886
No 46
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.97 E-value=30 Score=21.27 Aligned_cols=54 Identities=24% Similarity=0.538 Sum_probs=30.9
Q ss_pred CCCceecCCCCcceeeccccchhhHHHHHHHhhcCcccccccCCCCCCCCCCCCCCCCCCcchHHHHHH
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCF 106 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~FFrR~v~~~~~~~C~~~~~~~~~C~i~~~~r~~Cr~CRf~KCl 106 (113)
...|.||+..... --++.|..|...|. ..|-... . .........|..|+..++.
T Consensus 16 ~~~C~vC~~~~~~--~~ll~CD~C~~~~H--------~~Cl~Pp----l-~~~P~g~W~C~~C~~~~~~ 69 (92)
T 2e6r_A 16 SYICQVCSRGDED--DKLLFCDGCDDNYH--------IFCLLPP----L-PEIPRGIWRCPKCILAECK 69 (92)
T ss_dssp CCCCSSSCCSGGG--GGCEECTTTCCEEC--------SSSSSSC----C-SSCCSSCCCCHHHHHHHHS
T ss_pred CCCCccCCCcCCC--CCEEEcCCCCchhc--------cccCCCC----c-ccCCCCCcCCccCcCcccc
Confidence 4579999987532 23567888864332 2243211 0 0112235689999988764
No 47
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=20.76 E-value=72 Score=17.65 Aligned_cols=20 Identities=30% Similarity=0.875 Sum_probs=13.1
Q ss_pred CCCceecCCCCcceeeccccchhhHH
Q psy16245 38 DIPCKVCGDRSSGKHYGIYSCDGCSG 63 (113)
Q Consensus 38 ~~~C~VCg~~~~g~hyGv~sC~aC~~ 63 (113)
...|.+|+..+ ...|..|+.
T Consensus 15 ~~~C~~C~~~~------~~~Cs~C~~ 34 (60)
T 2dj8_A 15 SESCWNCGRKA------SETCSGCNT 34 (60)
T ss_dssp SCCCSSSCSCC------CEECTTTSC
T ss_pred CcccccCCCCC------cccCCCCCC
Confidence 46799999853 345666653
No 48
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.54 E-value=1e+02 Score=17.94 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=9.2
Q ss_pred CCCceecCCCCcc
Q psy16245 38 DIPCKVCGDRSSG 50 (113)
Q Consensus 38 ~~~C~VCg~~~~g 50 (113)
...|..|+....+
T Consensus 25 ~~~C~~C~~~I~~ 37 (89)
T 1x64_A 25 MPLCDKCGSGIVG 37 (89)
T ss_dssp CCBCTTTCCBCCS
T ss_pred CCCcccCCCEecc
Confidence 4579999886543
No 49
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.36 E-value=35 Score=19.46 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=18.0
Q ss_pred CCceecCCCCc-ceeeccccchhh
Q psy16245 39 IPCKVCGDRSS-GKHYGIYSCDGC 61 (113)
Q Consensus 39 ~~C~VCg~~~~-g~hyGv~sC~aC 61 (113)
..|.|||.+.. ...||...|.-|
T Consensus 19 ~rC~vcGr~~g~iRkfGL~~cR~c 42 (56)
T 3j20_P 19 RRCIRCGQYGPIIRIQGLMLCRHC 42 (56)
T ss_dssp CCCSSSCCSSSCCCTTTCCCCHHH
T ss_pred eEeecCCCCcccccccCChHHHHH
Confidence 46999999864 458998888776
Done!