Query psy16246
Match_columns 118
No_of_seqs 105 out of 1094
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 16:32:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qc1_B Acetylcholine receptor 99.8 4.2E-21 1.4E-25 145.2 6.4 76 42-117 88-163 (212)
2 4aod_A Acetylcholine-binding p 99.8 6.5E-20 2.2E-24 139.3 6.8 74 42-117 86-159 (205)
3 4aoe_A Acetylcholine-binding p 99.8 7.8E-20 2.7E-24 139.1 6.9 74 42-117 86-159 (205)
4 3igq_A GLR4197 protein; plgic 99.8 7E-20 2.4E-24 138.4 6.0 74 42-117 73-146 (201)
5 3sq6_A ACHBP, neuronal acetylc 99.8 1.2E-19 4.2E-24 136.9 6.1 71 42-116 85-157 (204)
6 2bg9_A Acetylcholine receptor 99.8 4.6E-19 1.6E-23 143.5 5.9 76 42-117 87-162 (370)
7 2bg9_E Acetylcholine receptor 99.8 2.9E-19 1E-23 144.7 4.3 76 42-117 86-161 (370)
8 3rqw_A ELIC pentameric ligand 99.8 6.6E-19 2.3E-23 139.6 6.1 74 42-117 73-146 (322)
9 2bg9_B Acetylcholine receptor 99.7 5.9E-19 2E-23 143.1 5.2 74 42-115 87-160 (370)
10 2bg9_C Acetylcholine receptor 99.7 6.6E-19 2.3E-23 142.8 5.4 74 42-115 89-162 (369)
11 3tlw_A GLR4197 protein, GLIC; 99.7 1.1E-18 3.7E-23 138.3 6.4 73 42-116 77-149 (321)
12 4aq5_A Acetylcholine receptor 99.7 9.8E-19 3.4E-23 146.3 6.1 75 42-116 111-185 (461)
13 4aq5_C Acetylcholine receptor 99.7 9.5E-19 3.2E-23 148.3 5.0 75 42-116 110-184 (522)
14 4aq5_B Acetylcholine receptor 99.7 8.5E-19 2.9E-23 147.6 4.6 75 42-116 111-185 (493)
15 3rhw_A Avermectin-sensitive gl 99.7 1.1E-18 3.7E-23 139.8 4.1 76 42-117 87-164 (347)
16 4aq5_E Acetylcholine receptor 99.7 6.9E-19 2.4E-23 147.9 2.5 76 42-117 86-161 (488)
17 2bj0_A Acetylcholine-binding p 99.7 6.2E-18 2.1E-22 127.0 6.3 72 42-117 82-155 (203)
18 4afh_A ACHBP; acetylcholine-bi 99.7 7.5E-18 2.6E-22 129.8 4.2 71 42-117 96-166 (230)
19 1uw6_A Acetylcholine-binding p 99.6 2.4E-16 8.3E-21 118.9 6.8 71 42-117 84-157 (211)
20 2wn9_A Soluble acetylcholine r 99.6 1.5E-16 5E-21 121.8 5.7 71 42-117 96-169 (228)
21 3mx7_A FAS apoptotic inhibitor 29.4 42 0.0015 22.1 2.8 55 60-117 27-83 (90)
No 1
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=99.83 E-value=4.2e-21 Score=145.20 Aligned_cols=76 Identities=45% Similarity=0.766 Sum_probs=71.3
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
-++|.+||++++.++....+.++|++||+|.|.+|++++++|+|++++||||+|.|.|.|+||+|++.+|+|.+.+
T Consensus 88 ~PDi~~~N~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~ 163 (212)
T 2qc1_B 88 RPDVVLYNNADGDFAIVKFTKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPES 163 (212)
T ss_dssp CCCEEECCBTTTSSCEECCCCEEEETTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEEEEESSCCTTTEEEEESC
T ss_pred CCceeccccccccccccceeeEEEECCeeEEEEeeeEEEEEccceeecCCCCceEEeEEEEcccccCceEEEEecc
Confidence 4789999999998887767899999999999999999999999999999999999999999999999999998754
No 2
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=99.80 E-value=6.5e-20 Score=139.28 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=67.4
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
-++|.+||+++. +.....+.++|++||+|.|.+|+.+.++|+|++..|||| |.|.|.||||+|++.+|+|.+++
T Consensus 86 ~PDi~l~N~~~~-~~~~~~~~~~v~~~G~V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~fgSw~y~~~~i~l~~~~ 159 (205)
T 4aod_A 86 TPDIFIFDSVGA-PEIFSDKLARVSQDGTVTYVPQLKVRLSCPLADLKLETG-VTCSLKSGSWTHSTQELTLEVNA 159 (205)
T ss_dssp CCCEEETTBSSC-CEECSCCEEEEETTSEEEECCEEEEEEECCCTTSSSSSC-EEEEEEEEESSCCTTTEEEECSS
T ss_pred cCCEEEEccccc-ceeecceEEEEecCCEEEEeccEEEEEEecCccccCCCC-cEEEEEEECccccccEEEEEECC
Confidence 478999999975 445567889999999999999999999999999999999 99999999999999999998754
No 3
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=99.79 E-value=7.8e-20 Score=139.11 Aligned_cols=74 Identities=20% Similarity=0.330 Sum_probs=66.2
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
-++|.+||+++. .....++.++|++||+|.|.+|++++++|+|+ ..||||+|.|.|.||||+|++.+|+|...+
T Consensus 86 ~PDi~l~N~~~~-~~~~~~~~v~v~~~G~V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~fgSw~y~~~~l~l~~~~ 159 (205)
T 4aoe_A 86 LPHIEVYNSIGK-PGIHSDQLVRVYKDGTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTYDVRDLVLDESQ 159 (205)
T ss_dssp CCCCEETTBSSC-CEECSCCEEEEETTSEEEECCEEEEEEECCCT-TSSSSSCEEEEEEEECSSCCTTTEEEECSS
T ss_pred cccEEEeccccc-cccccceEEEEeCCcEEEEeCcEEEEEecccC-cCCCccCCeEEEEEECccCChheEEEecCc
Confidence 478999999865 34456788999999999999999999999999 789999999999999999999999997543
No 4
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=99.79 E-value=7e-20 Score=138.44 Aligned_cols=74 Identities=11% Similarity=-0.036 Sum_probs=61.9
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
-++|.+||+++. ....++.++|++||+|.|.+|+.++++|+|++++||||+|.|.|.|+||+|++.+|+|.+.+
T Consensus 73 ~PDi~l~N~~~~--~~~~~~~v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~ 146 (201)
T 3igq_A 73 IPEIRFVNVENA--RDADVVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDL 146 (201)
T ss_dssp CCCEEESSBSSS--CEEEEEEEEECTTCEEEEEEEEEEEEECCCC------CEEEEEEEEEECCCSSCCEEEEECG
T ss_pred ccCEEEEccccc--ccccceEEEEeCCCcEEEecceeEEEecCcccccCCCCccEeeEEEeccCCCceEEEEEecC
Confidence 478999999765 34678999999999999999999999999999999999999999999999999999998753
No 5
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=99.78 E-value=1.2e-19 Score=136.93 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=65.2
Q ss_pred hhhhhhhhcCC--CCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEc
Q psy16246 42 EEKKNNKENAD--GNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVN 116 (118)
Q Consensus 42 ~~~~~~yNs~d--~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~ 116 (118)
-++|.+||+++ +.++.+ +++|++||+|.|.+|++++++|+|++ .||||+|.|.|.|+||+|++.+|+|.+.
T Consensus 85 ~PDi~~~N~~~~~~~~~~~---~v~v~~~G~V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~f~S~~y~~~~v~l~~~ 157 (204)
T 3sq6_A 85 VPDLAAYNAISKPEVLTPQ---LALVNSSGHVQYLPSIRQRFSCDVSG-VDTESGATCKLKFGSWTHHSRELDLQMQ 157 (204)
T ss_dssp CCCEEETTBSSCCEECSCC---EEEEETTSEEEECCEEEEEEECCCGG-GSSSSCEEEEEEEEESSCCTTTEEEECC
T ss_pred CCCEEeEcccccCCccccc---EEEEEeCCEEEEecCeeEEEeccccc-cCCCCCcEEEEEEEeecccCeEEEEEec
Confidence 47899999999 666543 99999999999999999999999999 9999999999999999999999999754
No 6
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.76 E-value=4.6e-19 Score=143.54 Aligned_cols=76 Identities=47% Similarity=0.819 Sum_probs=70.7
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
-+||.+||+++++++....++++|++||+|.|.+|+.++++|+||+++||||+|+|.|.|+||+|++.++++.+.+
T Consensus 87 ~PDi~~~N~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~ 162 (370)
T 2bg9_A 87 LPDLVLYNNADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPES 162 (370)
T ss_dssp CCCEEETTCCCSCEESCSSCEEEECSSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEEEESSCCTTTEEEECCC
T ss_pred CCcEeccccccccccccccceEEEECCeeEEEecceEEEEECCCCcCCCCCCcceeeEEEEEecccCcEEEEEecC
Confidence 4789999999988877667899999999999999999999999999999999999999999999999999987643
No 7
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.75 E-value=2.9e-19 Score=144.69 Aligned_cols=76 Identities=41% Similarity=0.735 Sum_probs=71.1
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
-++|.+||+++++++....+++.|++||+|.|.+|+.++++|+|++++||||+|+|.|.|+||+|++.++++.+.+
T Consensus 86 ~PDi~~~N~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~ 161 (370)
T 2bg9_E 86 LPDVVLENNVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSA 161 (370)
T ss_dssp CCCEEESSSCCSCCBSSSSCCCEECSSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEECCC
T ss_pred CCCEeeccccCCcccccccccEEEECCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEeeccccceeEEEecC
Confidence 4789999999998887777889999999999999999999999999999999999999999999999999998754
No 8
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=99.75 E-value=6.6e-19 Score=139.58 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=69.7
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
-+||.+||++++.+ ..++.++|++||+|.|.+|+.+++.|+||+++||||+|+|.+.|+||+|+++++++.+++
T Consensus 73 ~Pdi~l~N~~~~~~--~~~~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~ 146 (322)
T 3rqw_A 73 VPALEFINVVGSPD--TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQ 146 (322)
T ss_dssp CCCEEETTBSSCCE--EEEEEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEEEEEEEEE
T ss_pred CCcEEEEcccCccc--ccceeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcceEEEEECC
Confidence 47899999999888 778999999999999999999999999999999999999999999999999999998753
No 9
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.75 E-value=5.9e-19 Score=143.09 Aligned_cols=74 Identities=43% Similarity=0.734 Sum_probs=69.8
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEE
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSV 115 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~ 115 (118)
-+||.+||+++++++....++++|++||+|.|.+|+.++++|+|++++||||+|+|.|.|+||+|++.++++.+
T Consensus 87 ~PDi~~~N~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~ 160 (370)
T 2bg9_B 87 QPDIVLMNNNDGSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQH 160 (370)
T ss_dssp CCCEEESSCCCSCEESSSSCEEEEETTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEEEESSCCBTSCEEEC
T ss_pred CCCccccccccccccccccceEEEeCCceEEEEecceEEEEccCcccCCCCCceeeeEEEEeccccccEEEEEe
Confidence 37899999999988776678999999999999999999999999999999999999999999999999999987
No 10
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.75 E-value=6.6e-19 Score=142.76 Aligned_cols=74 Identities=36% Similarity=0.701 Sum_probs=69.7
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEE
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSV 115 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~ 115 (118)
-+||.+||+++++++....++++|++||+|.|.+|+.++++|+||+++||||+|+|.|.|+||+|++.++++.+
T Consensus 89 ~PDi~~~N~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~ 162 (369)
T 2bg9_C 89 IPDIVLQNNNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDL 162 (369)
T ss_dssp CCCEEETTTCSSCCBSSSSCCEEECSSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEEEESSCCTTTCEEEC
T ss_pred CCcEeccccccccccccccccEEEECCccEEEecCEEEEEECcCcccCCCCCceEeeEEEEEecccCceEEEEE
Confidence 47899999999988877778899999999999999999999999999999999999999999999999999875
No 11
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=99.75 E-value=1.1e-18 Score=138.31 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=68.6
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEc
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVN 116 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~ 116 (118)
-+||.+||++++. ...++.++|++||+|.|.+|+.++++|+||+++||||+|+|.|.|+||+|++.++++.+.
T Consensus 77 ~PDi~l~N~~~~~--~~~~~~~~v~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~ 149 (321)
T 3tlw_A 77 IPEIRFVNVENAR--DADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVD 149 (321)
T ss_dssp CCCEEESSBSSCC--EEEEEEEEECTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCEEEEEC
T ss_pred cCcEEeecccccc--cccceeEEEeCCccEEEecceEEEEEEEeecccCCCCceeEeEEEecccCChhhEEEEEc
Confidence 4689999999987 667889999999999999999999999999999999999999999999999999999875
No 12
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.74 E-value=9.8e-19 Score=146.25 Aligned_cols=75 Identities=48% Similarity=0.828 Sum_probs=70.6
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEc
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVN 116 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~ 116 (118)
-+||.+||+++++++....++++|++||+|.|.+|++++++|+|++++||||+|+|+|.|+||+|++.++++.+.
T Consensus 111 ~PDi~l~N~~d~~~~~~~~~~v~v~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~ 185 (461)
T 4aq5_A 111 LPDLVLYNNADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPE 185 (461)
T ss_dssp CCCEEESSCCCSCCTTCSSCEEEECSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEECC
T ss_pred CCceeeecccccccccccccceEEcCCccEEEeccccccccccccccCCCCccCccCeEEeccccCCceEEEEec
Confidence 478999999999988777789999999999999999999999999999999999999999999999999998754
No 13
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.74 E-value=9.5e-19 Score=148.26 Aligned_cols=75 Identities=36% Similarity=0.682 Sum_probs=70.4
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEc
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVN 116 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~ 116 (118)
-+||.+||+++++++....+++.|++||+|.|.+|++++++|+|++++||||+|+|.|.|+||+|++.+|++.+.
T Consensus 110 ~PDi~l~N~~d~~~~~~~~~nv~V~~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~l~~~ 184 (522)
T 4aq5_C 110 IPDIVLQNNNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLM 184 (522)
T ss_dssp CCCEEETTTCSSCCBSCSSCCEEECSSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTCCTTTCCEEC-
T ss_pred CCcEeccccccCCccccccceEEEeCCccEEEEcccccccccccccCcCCCcCceEeEEEecccccCceeEEEec
Confidence 478999999999988877889999999999999999999999999999999999999999999999999998764
No 14
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.74 E-value=8.5e-19 Score=147.57 Aligned_cols=75 Identities=43% Similarity=0.723 Sum_probs=70.7
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEc
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVN 116 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~ 116 (118)
-+||.+||+++++++....+++.|++||+|.|.+|++++++|+||+++||||+|+|+|.|+||+|++.+|++.+.
T Consensus 111 ~PDi~l~N~~d~~~~~~~~~nv~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~ 185 (493)
T 4aq5_B 111 QPDIVLMNNNDGSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHA 185 (493)
T ss_dssp CCCCEESSCCCSCEESSSSSCEEECTTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEEECSSCCBTSCEEECC
T ss_pred cCcEEEecccccccccccccceEEecCCCEEEeeeeeeeecccccccCCCccceeEEEEEeeecCccccEEEEec
Confidence 378999999999888777789999999999999999999999999999999999999999999999999999874
No 15
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=99.73 E-value=1.1e-18 Score=139.79 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=68.1
Q ss_pred hhhhhhhhcCCCCCcee--eeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246 42 EEKKNNKENADGNFEVT--LATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~--~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
-+||.+||++++.++.. .+..++|++||+|.|.+|+.++++|+|++++||||+|+|.|.|+||+|++.++++.+.+
T Consensus 87 ~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~ 164 (347)
T 3rhw_A 87 MPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKE 164 (347)
T ss_dssp CCCEECTTEEEEEECCSSSCSEEEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEECS
T ss_pred cCCEeeeccccccccccccccEEEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEecC
Confidence 47899999998776643 35567899999999999999999999999999999999999999999999999998754
No 16
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.73 E-value=6.9e-19 Score=147.94 Aligned_cols=76 Identities=41% Similarity=0.735 Sum_probs=71.2
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
-+||.+||+++++++....+++.|++||+|.|.+|++++++|+|++++||||+|+|.|.|+||+|++.+|++.+.+
T Consensus 86 ~PDi~l~N~~d~~~~~~~~~nv~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~ 161 (488)
T 4aq5_E 86 LPDVVLENNVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSA 161 (488)
T ss_dssp CCCEECSSSCCSCCBSCSSSCCCBCTTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESSSCSSSCCEECCC
T ss_pred CCceehhccccccccccccccEEEeCCceEEEecceeEEeecccccccCCCcCceeeEEeeeeccccceEEEEecc
Confidence 4789999999999887777889999999999999999999999999999999999999999999999999987653
No 17
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=99.72 E-value=6.2e-18 Score=127.00 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=67.0
Q ss_pred hhhhhhhhc-CCCCCceeeeeeEEEEeccEEEEeCCeeEEeeccc-ccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246 42 EEKKNNKEN-ADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEI-DVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 42 ~~~~~~yNs-~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~m-dl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
-++|.+||+ +++.++.. +.++|++||+|.|.+|+.++++|+| ++++ ||+|.|.|.|+||+|++.+|+|.+.+
T Consensus 82 ~PDi~~~N~~~~~~~~~~--~~v~i~~~G~V~~~~~~~~~~~C~m~dl~~--fD~Q~C~l~f~S~~y~~~~v~l~~~~ 155 (203)
T 2bj0_A 82 TPDLSFYNAIAAPELLSA--DRVVVSKDGSVIYVPSQRVRFTCDLINVDT--EPGATCRIKVGSWTHDNKQFALITGE 155 (203)
T ss_dssp CCCEEETTCSSCCEECSC--CEEEEETTSEEEECCEEEEEEECCCTTTTS--SSCEEEEEEEEESSCCTTTEEEEECT
T ss_pred CCCccccccccccccccc--eEEEEeCCcEEEEecceEEEEEccccccCc--cccceeeEEEEcccccCcEEEEEecC
Confidence 478999999 99877766 8999999999999999999999999 9998 99999999999999999999998754
No 18
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=99.69 E-value=7.5e-18 Score=129.83 Aligned_cols=71 Identities=27% Similarity=0.466 Sum_probs=66.1
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
-++|.+||++++.++.+..++++|++||+|.|.+|++++++|+| |||+|.|.|.|+||+|++.+|+|.+.+
T Consensus 96 ~PDi~l~N~~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~s~C~m-----PfD~Q~C~l~f~S~~y~~~~v~l~~~~ 166 (230)
T 4afh_A 96 TPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVS-----QDDVDSCHFQFGSWVYSVDEVDIHFMD 166 (230)
T ss_dssp CCCEEETTCSSSSCEECTTSCEEEETTSEEEECCEEEEEEEEEE-----ETTEEEEEEEEEESSCCTTTEEEEEGG
T ss_pred CCcEEEEecccccccccccceEEEEcCCEEEEecCEEEEEECCC-----CCCcccCCEeeccccccCceEEEEECC
Confidence 47899999999988876678999999999999999999999999 999999999999999999999998753
No 19
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=99.64 E-value=2.4e-16 Score=118.91 Aligned_cols=71 Identities=24% Similarity=0.350 Sum_probs=65.5
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecc---cccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCE---IDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~---mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
-++|.+||++++. ..+..+.++|++||+|.|.+|++++++|+ |+++ |+|.|.|.|+||+|++.+|+|.+.+
T Consensus 84 ~PDi~~~N~~~~~-~~~~~~~~~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~S~~y~~~~i~l~~~~ 157 (211)
T 1uw6_A 84 VPDLAAYNAISKP-EVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTE----SGATCRIKIGSWTHHSREISVDPTT 157 (211)
T ss_dssp CCCEEETTBCSCC-EECSCCEEEEETTSEEEECCEEEEEEECCCTTTTSS----SCEEEEEEEEESSCCTTTEEEEECC
T ss_pred CCCEeeecccccc-ccceeeEEEEeCCceEEEeCCEEEEEECCCCCCCCC----cceEeEEEEEcccccCceEEEEecc
Confidence 4789999999987 65556999999999999999999999999 9998 9999999999999999999998754
No 20
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=99.64 E-value=1.5e-16 Score=121.82 Aligned_cols=71 Identities=24% Similarity=0.466 Sum_probs=66.4
Q ss_pred hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecc---cccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246 42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCE---IDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~---mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
-++|.+||++++.++.+ ++.++|++||+|.|.+|++++++|+ |+++ |+|.|.|.|+||+|++.+|++.+.+
T Consensus 96 ~PDi~l~N~~~~~~~~~-~~~v~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~Sw~y~~~~i~l~~~~ 169 (228)
T 2wn9_A 96 TPDITAYSSTRPVQVLS-PQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLKTDT 169 (228)
T ss_dssp CCCEEESSBSSCCEECS-CCEEEEETEEEEEECCEEEEEEECCCTTTTST----TCEEEEEEEEESSCCTTTEEEECSC
T ss_pred CCceecccccccccccc-cceEEEeCCeEEEEeCCEEEEEECCCCCCCCC----cCcEeeEEEEeecccccEEEEEecC
Confidence 47899999999988776 8999999999999999999999999 9998 9999999999999999999998753
No 21
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=29.43 E-value=42 Score=22.08 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=37.1
Q ss_pred eeeEEEEeccEEEEeCCeeEEeecccccccCCCCc--ceeeeEEecccccCCeEEEEEcC
Q psy16246 60 ATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDE--QTCVLKFGSWTYDGFKVPGSVNG 117 (118)
Q Consensus 60 ~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~--Q~C~L~fgSwsys~~eI~Ls~~~ 117 (118)
.-...|.-||...+..+.....-+.- .|++.. ..|.+.+.+-+.......|.+||
T Consensus 27 tGkrvi~VDGkev~r~~wmfklvGke---~F~ig~~~~k~~I~I~a~~~~~y~YtL~Vng 83 (90)
T 3mx7_A 27 SGKRVVYVDGKEEIRKEWMFKLVGKE---TFYVGAAKTKATINIDAISGFAYEYTLEING 83 (90)
T ss_dssp TCCEEEEETTEEEEEECCCSCCCEEE---EEEETTTTEEEEEEEEEETTTEEEEEEEETT
T ss_pred cceEEEEECCEEEEecCCeEEEEeeE---eEEECCcceEEEEEEEecCCccEEEEEEECC
Confidence 34578889999888887666544332 356667 88998887654445556666664
Done!