RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16246
(118 letters)
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 129 bits (325), Expect = 1e-37
Identities = 35/63 (55%), Positives = 43/63 (68%)
Query: 49 ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
NADG+F + TK + Y G + W PPAI+KS CEI V +FPFD+Q C +K G WTYDG
Sbjct: 94 NNADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDG 153
Query: 109 FKV 111
KV
Sbjct: 154 TKV 156
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 122 bits (309), Expect = 9e-37
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 49 ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
NADG+F + TK + Y G + W PPAI+KS CEI V +FPFDEQ C +K G+ TYDG
Sbjct: 95 NNADGDFAIVKFTKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDG 154
Query: 109 FKV 111
V
Sbjct: 155 SAV 157
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 128 bits (322), Expect = 2e-36
Identities = 35/63 (55%), Positives = 43/63 (68%)
Query: 49 ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
NADG+F + TK + Y G + W PPAI+KS CEI V +FPFD+Q C +K G WTYDG
Sbjct: 118 NNADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDG 177
Query: 109 FKV 111
KV
Sbjct: 178 TKV 180
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 125 bits (315), Expect = 4e-36
Identities = 31/63 (49%), Positives = 37/63 (58%)
Query: 49 ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
N DG FEV +Y G + W PPAIY+S+C I V YFPFD Q C L F S TY+
Sbjct: 93 NNVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNA 152
Query: 109 FKV 111
+V
Sbjct: 153 HEV 155
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 124 bits (313), Expect = 8e-36
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 49 ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
N DG + V + G V W PPAI++SSC I+V YFPFD Q C LKF + Y+
Sbjct: 96 NNNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNA 155
Query: 109 FKV 111
++
Sbjct: 156 NEI 158
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 123 bits (310), Expect = 2e-35
Identities = 32/63 (50%), Positives = 40/63 (63%)
Query: 49 ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
N DG+FE+TL + + G V W P AIY+SSC I V YFPFD Q C + F S+TYD
Sbjct: 94 NNNDGSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDT 153
Query: 109 FKV 111
+V
Sbjct: 154 SEV 156
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 125 bits (314), Expect = 3e-35
Identities = 32/64 (50%), Positives = 40/64 (62%)
Query: 48 KENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYD 107
N DG+FE+TL + + G V W P AIY+SSC I V YFPFD Q C + F S+TYD
Sbjct: 117 MNNNDGSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYD 176
Query: 108 GFKV 111
+V
Sbjct: 177 TSEV 180
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 124 bits (311), Expect = 9e-35
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 49 ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
N DG + V + G V W PPAI++SSC I+V YFPFD Q C LKF + Y+
Sbjct: 117 NNNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNA 176
Query: 109 FKV 111
++
Sbjct: 177 NEI 179
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 121 bits (303), Expect = 8e-34
Identities = 31/64 (48%), Positives = 37/64 (57%)
Query: 49 ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
N DG FEV +Y G + W PPAIY+S+C I V YFPFD Q C L F S TY+
Sbjct: 93 NNVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNA 152
Query: 109 FKVP 112
+V
Sbjct: 153 HEVN 156
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 110 bits (277), Expect = 8e-31
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
+ ++ G V++ + +D +PFD QT + + D
Sbjct: 85 VENARD--ADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTR 142
Query: 110 KV 111
+
Sbjct: 143 NI 144
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 104 bits (260), Expect = 4e-29
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
++ +V A + + G V + P C+ + TC +KFGSW Y GF
Sbjct: 103 SSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTG-VDSEEGATCAVKFGSWVYSGF 161
Query: 110 KV 111
++
Sbjct: 162 EI 163
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 103 bits (257), Expect = 8e-29
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 49 ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
+ D + + T+A ++ G V W PPA+ K C D +C +FGSW Y
Sbjct: 103 NSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQ-----DDVDSCHFQFGSWVYSV 157
Query: 109 FKV 111
+V
Sbjct: 158 DEV 160
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 101 bits (253), Expect = 3e-28
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
NA EV A + G V++ P + SC++ TC LKFGSWT+
Sbjct: 92 NAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTE-SGATCKLKFGSWTHHSR 150
Query: 110 KV 111
++
Sbjct: 151 EL 152
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 100 bits (250), Expect = 7e-28
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCE-IDVEYFPFDEQTCVLKFGSWTYDG 108
NA E+ A + + G V + P + +C+ I+V+ P TC +K GSWT+D
Sbjct: 89 NAIAAPELLSADRVVVSKDGSVIYVPSQRVRFTCDLINVDTEPG--ATCRIKVGSWTHDN 146
Query: 109 FKV 111
+
Sbjct: 147 KQF 149
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 99.6 bits (248), Expect = 1e-27
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
NA EV A + G V + P + SC++ TC +K GSWT+
Sbjct: 91 NAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTE-SGATCRIKIGSWTHHSR 149
Query: 110 KV 111
++
Sbjct: 150 EI 151
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 96.2 bits (240), Expect = 2e-26
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
+ ++ G V++ + +D D QT + + D
Sbjct: 81 VENARD--ADVVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTR 138
Query: 110 KV 111
+
Sbjct: 139 NI 140
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 93.6 bits (233), Expect = 2e-24
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 46 NNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWT 105
N + D T + ++ G V + + S ++D FPFD Q VL+ ++
Sbjct: 80 NVVGSPD-----TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFS 134
Query: 106 YDGFKV 111
Y+ ++
Sbjct: 135 YNNQQL 140
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 93.0 bits (231), Expect = 5e-24
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 50 NADGNFEVTLATKA--TIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYD 107
I+ G V + SC + ++Y+P D Q C + S+ Y
Sbjct: 95 EKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYT 154
Query: 108 GFKV 111
+
Sbjct: 155 TKDI 158
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.005
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 4 KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKEN 50
+ +E E + +EEQ+K + E + +++ E+ K + E
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQEL--DAASKVMEQEWREKAKKDLEE 122
Score = 26.3 bits (57), Expect = 2.2
Identities = 8/48 (16%), Positives = 24/48 (50%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKE 49
++++ + E++ E+ K+ E+ + E+ +K K+ + +K
Sbjct: 97 RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 32.8 bits (75), Expect = 0.016
Identities = 6/49 (12%), Positives = 25/49 (51%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKEN 50
+++ +E + + ++E+ + ++ + + +KK +EE + ++
Sbjct: 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019
Score = 32.8 bits (75), Expect = 0.018
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 4 KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVE 42
+ EKEE R+ +Q KE+ E E + EE K+ +++
Sbjct: 1033 TLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071
Score = 32.0 bits (73), Expect = 0.036
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 1 MKMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKEN 50
+K++ + E+ +K E K + + +E+ K+ K + EK NN E
Sbjct: 909 LKIEARSVERYKKLHIGLENKIM--QLQRKIDEQNKEYKSLLEKMNNLEI 956
Score = 31.6 bits (72), Expect = 0.042
Identities = 6/49 (12%), Positives = 22/49 (44%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKEN 50
+++ +K E K + ++++ E+ + + +K +E + +
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963
Score = 31.2 bits (71), Expect = 0.053
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEE----EKKKKKVEEKKNNKE 49
+ K+ K EK E EK + E E++ K + + +
Sbjct: 939 EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990
Score = 29.7 bits (67), Expect = 0.22
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENA 51
+K + E+ R EE+ K + +EE K +K + ++
Sbjct: 960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Score = 29.3 bits (66), Expect = 0.32
Identities = 9/51 (17%), Positives = 24/51 (47%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENAD 52
+ + +++ + +KEE + + ++ + E +KK E K+ + D
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074
Score = 28.5 bits (64), Expect = 0.58
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKE 49
+ +EE + ++E + EKK EE +K K + E+ + +
Sbjct: 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Score = 28.2 bits (63), Expect = 0.71
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 1 MKMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKK----KKVEEKKNNKEN 50
M++++K E+ ++ + E+ + E E+ + + EE+ N N
Sbjct: 931 MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATN 984
Score = 27.8 bits (62), Expect = 0.82
Identities = 8/49 (16%), Positives = 19/49 (38%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKEN 50
+ +E+ K ++ + +K+ EE K K E+ ++
Sbjct: 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Score = 27.4 bits (61), Expect = 1.2
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 3 MKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNK 48
+ + + EK+ E ++ K E + +E+ K +E+ N +
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045
Score = 27.0 bits (60), Expect = 1.5
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 3 MKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKEN 50
++ ++E K+ K E + V K+ E K +++ K + +
Sbjct: 897 YRRMMAKRELKKLKIEA--RSVERYKKLHIGLENKIMQLQRKIDEQNK 942
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 32.7 bits (75), Expect = 0.019
Identities = 4/46 (8%), Positives = 12/46 (26%)
Query: 4 KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKE 49
+ + + K E + + E ++N +
Sbjct: 900 NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSD 945
Score = 25.4 bits (56), Expect = 5.4
Identities = 4/45 (8%), Positives = 14/45 (31%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKN 46
++K ++ + + E E +K + + +
Sbjct: 964 LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.5 bits (74), Expect = 0.019
Identities = 8/49 (16%), Positives = 32/49 (65%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKEN 50
+++++ + ++ + +K++ ++++ + +E EEEE ++K++ +K +
Sbjct: 935 RIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983
Score = 29.8 bits (67), Expect = 0.17
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKN 46
K K K K + E E + + ++++ +E EK K+K+E + +
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070
Score = 28.6 bits (64), Expect = 0.44
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 5 KKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENAD 52
+++ E+EE R+K + +K + K + E++ + + K KE
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL 1008
Score = 28.6 bits (64), Expect = 0.49
Identities = 6/49 (12%), Positives = 28/49 (57%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKEN 50
+ ++ + EK++ +++ + ++++ E++ ++ + +K + K E+
Sbjct: 942 RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMED 990
Score = 27.5 bits (61), Expect = 1.1
Identities = 7/52 (13%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 1 MKMKKKRKEKEEKERKKEEQKKEVGEKKEG-EEEEEKKKKKVEEKKNNKENA 51
++++ E E + ++EE+ +++ +K+ +++ ++++EE++ ++
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974
Score = 27.1 bits (60), Expect = 1.7
Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 5 KKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKK--KKVEEKKNNKE 49
+K++ E+ + E + E E++ + + EKKK +++ + + E
Sbjct: 919 AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965
Score = 27.1 bits (60), Expect = 1.9
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 1 MKMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGNFEVTLA 60
+ + + + K KE ++ ++ V + EEE+K K + + KN E+ EV L
Sbjct: 992 ILIMEDQNNKLTKE--RKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK 1049
Score = 26.7 bits (59), Expect = 2.1
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 1 MKMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKEN 50
K + + KE E+K + E+K + EK + E E + +++ + K+
Sbjct: 874 QKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQ 923
Score = 26.7 bits (59), Expect = 2.2
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 5 KKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKK 45
+ +K+E ++ + EEEEE+ ++ EKK
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK 951
Score = 26.3 bits (58), Expect = 2.8
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKEN 50
+ + + KK+E ++ + E + EEEE++ ++++ +K +
Sbjct: 907 LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ 955
Score = 26.3 bits (58), Expect = 3.4
Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEE-----EKKKKKVEEKKNNKE 49
++++ +E+E +K + +K K + E++ ++ K +E+K +E
Sbjct: 959 DLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011
Score = 26.0 bits (57), Expect = 3.7
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 1 MKMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENAD 52
++ ++ ++K + E+ + K + E E++ K E K + +D
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015
Score = 25.2 bits (55), Expect = 6.3
Identities = 12/59 (20%), Positives = 21/59 (35%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGNFEVTLA 60
K+KK + E + + KE +E + + EEK N E ++
Sbjct: 984 KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042
Score = 25.2 bits (55), Expect = 6.6
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEK 44
+ +K+E E E + + E++E ++ + +KKK++++
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956
Score = 25.2 bits (55), Expect = 8.0
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 4 KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENA 51
+ K+K +++ E++ E E + + EK + KK +
Sbjct: 946 LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDIL 993
Score = 25.2 bits (55), Expect = 8.1
Identities = 9/53 (16%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1 MKMKKKRKEKEEKERKK--EEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENA 51
++ +KK+ +++ + ++ EE++ + + + + K KK+E+ E+
Sbjct: 946 LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 32.2 bits (74), Expect = 0.021
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKK 45
K + + EE+E KEE++ E EEEEEKK K + +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 30.6 bits (70), Expect = 0.068
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 3 MKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKE 49
K + EE ++E K+E + + EE++++K + K ++
Sbjct: 214 WSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 28.3 bits (64), Expect = 0.43
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGNFEV 57
+ + E E+ ++EE KE E + E E+++++ + K E ++E+
Sbjct: 212 YVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.050
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 8/34 (23%)
Query: 35 EKKK-KKVEE--KKNNKENADGNFEVTLATKATI 65
EK+ KK++ K ++A LA KAT+
Sbjct: 18 EKQALKKLQASLKLYADDSAPA-----LAIKATM 46
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 30.3 bits (68), Expect = 0.13
Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 2 KMKKKRKEKEEKERKKE----------EQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENA 51
K+K+ ++++ E K++ + KE+ +K + +K + + E
Sbjct: 1960 KLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQL 2019
Query: 52 DGNFEVTLATKATI 65
+ + I
Sbjct: 2020 ENAANELKLKQDEI 2033
Score = 28.3 bits (63), Expect = 0.69
Identities = 8/57 (14%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKK-KKKVEEKKNNKENADGNFEV 57
++ K ++ +K ++ + ++ K++ E + + + +E K A + E
Sbjct: 1949 ELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEK 2005
Score = 27.2 bits (60), Expect = 1.5
Identities = 8/45 (17%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 2 KMKKKRKEKE-EKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKK 45
++ +K E + K E+ +++ + + ++ E K+K E +
Sbjct: 1938 DLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQ 1982
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 30.3 bits (69), Expect = 0.13
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 4 KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGNFEVT 58
+K + ++EK+ + Q+ E E+ +++ + +K ++ N EVT
Sbjct: 401 QKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVT 455
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 29.3 bits (65), Expect = 0.23
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEE 43
+ + + +E+ KE + E ++ + E
Sbjct: 217 GLYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 29.5 bits (66), Expect = 0.25
Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 4 KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGNFE 56
+ ++E E +KKEE+++ + E + +E++++++ K G F+
Sbjct: 389 SEAKQENENMRKKKEEEERR--ARMEAQLKEQRERERKMRKAKENSEESGEFD 439
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.7 bits (65), Expect = 0.35
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 5 KKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEK 44
K+ K KE+ + E++K EKKE E+E + K + K
Sbjct: 65 KRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104
Score = 25.7 bits (57), Expect = 4.0
Identities = 11/66 (16%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 4 KKKRKEKEEKERKKEEQK---KEVGEKK-EGEEEEE--KKKKKVEEKKNNKENADGNFEV 57
K+ K + + + ++ KE+G++ E+ ++ +K+K+ +K + +
Sbjct: 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADK 99
Query: 58 TLATKA 63
L +K
Sbjct: 100 NLRSKI 105
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 29.1 bits (65), Expect = 0.35
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGNFE 56
K +KR+E EEK R+ + K EK E E E+++K++ N + + G +
Sbjct: 381 KENQKRRETEEKMRRAKLAK----EKAEKERLEKQQKREQLIDMNAEGDETGVMD 431
Score = 28.3 bits (63), Expect = 0.60
Identities = 11/49 (22%), Positives = 29/49 (59%)
Query: 6 KRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGN 54
+ KE ++R++ E+K + + + E+E+ +K+ + ++ NA+G+
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGD 425
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 28.7 bits (63), Expect = 0.48
Identities = 3/32 (9%), Positives = 14/32 (43%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEE 33
+ + + + +E + + Q + + +G+
Sbjct: 324 EKEAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
Score = 27.5 bits (60), Expect = 0.97
Identities = 7/53 (13%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGN 54
K++ + K++ +KE + + + E + + + + + A G+
Sbjct: 310 KVENEDMNKDQILLEKEAELRRMQEMIARMQAQM---QMQMQGGDGDGGALGH 359
Score = 26.0 bits (56), Expect = 3.5
Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 1 MKMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKE 49
M + EKE + R+ +E + + + + + + +
Sbjct: 316 MNKDQILLEKEAELRRMQEMIA----RMQAQMQMQMQGGDGDGGALGHH 360
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.6 bits (63), Expect = 0.54
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 1 MKMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGNFEVTLA 60
++ KEKE + ++ E++ E + ++ + +KKK+E+KK + ++ F+
Sbjct: 344 QMFVQRVKEKEAELKEAEKELHE--KFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKT 401
Query: 61 TKATIYYQGL 70
+ QG
Sbjct: 402 AAELLQSQGS 411
Score = 25.1 bits (54), Expect = 8.1
Identities = 6/50 (12%), Positives = 23/50 (46%)
Query: 1 MKMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKEN 50
+ ++K+ E+K++ +++ ++K E + + + + K +
Sbjct: 373 KLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRD 422
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme,
TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A*
3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Length = 746
Score = 28.3 bits (62), Expect = 0.58
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 75 PPAIY------KSSCEIDVEYFPFDEQTCVLKFGSWTYDGFK 110
+IY SCEI+ TC +++ G+
Sbjct: 703 ADSIYFREGQDAGSCEINPLACLPQAATCAPDLPVFSHGGYP 744
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 28.0 bits (61), Expect = 0.61
Identities = 9/49 (18%), Positives = 24/49 (48%)
Query: 4 KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENAD 52
+K+ +E + + E++ +E +K E + + ++ + K NN+
Sbjct: 110 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 158
Score = 26.8 bits (58), Expect = 1.8
Identities = 11/47 (23%), Positives = 26/47 (55%)
Query: 4 KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKEN 50
+++RK +E + + ++E EK + + EE +++ + +KN N
Sbjct: 107 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 153
Score = 25.7 bits (55), Expect = 4.9
Identities = 7/45 (15%), Positives = 25/45 (55%)
Query: 5 KKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKE 49
+ ++ E RK E++++ ++ + + +++ + + KK+ +E
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 137
Score = 24.9 bits (53), Expect = 8.4
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 3 MKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEK 44
+ +E E + +EEQ+K + E + E++ ++ +K
Sbjct: 92 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 133
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 27.7 bits (62), Expect = 1.1
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 9 EKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENA 51
+E +ER+K ++ E +EEE K+ E++
Sbjct: 728 FQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRTP 770
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 27.4 bits (61), Expect = 1.1
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 8 KEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKK 40
+ E + EE K E E G + E+ +
Sbjct: 205 EAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 27.1 bits (59), Expect = 1.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 4 KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKE 49
+ +KE E +R +EE + +KE + E KK K+E+ N
Sbjct: 308 DRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGT 353
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 26.8 bits (58), Expect = 1.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 1 MKMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKE 49
+ KK R++K +K ++ KK V KK ++ KK EKK E
Sbjct: 367 VPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTE 415
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 191
Score = 26.6 bits (58), Expect = 1.8
Identities = 9/61 (14%), Positives = 22/61 (36%)
Query: 48 KENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYD 107
K +G+ ++ K T + V+ + S + + + + V G ++
Sbjct: 50 KRLRNGHVGISFVPKETGEHLVHVKKNGQHVASSPIPVVISQSEIGDASRVRVSGQGLHE 109
Query: 108 G 108
G
Sbjct: 110 G 110
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 26.6 bits (59), Expect = 2.1
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 6 KRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKK 40
+ KE ++R++ E+K + + + E+E+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 25.1 bits (55), Expect = 6.3
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKK 28
K ++ ++ + KE+ +KE EK+
Sbjct: 314 KRRETEEKMRRAKLAKEKAEKERLEKQ 340
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 26.8 bits (59), Expect = 2.1
Identities = 4/45 (8%), Positives = 8/45 (17%)
Query: 16 KKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGNFEVTLA 60
+ + + + N E LA
Sbjct: 680 ASGAAGGGGSGGGGSMSKTASSRNSLSAQLRRAANTRIEVEGNLA 724
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5,
RNA processing, cleavage factor, diadenosine
tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo
sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A
3q2t_A 2j8q_A 3p5t_A 3p6y_A
Length = 208
Score = 26.5 bits (58), Expect = 2.3
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 25 GEKKEGEEEEEKKKKKVEEKKNNKENADGNFEV 57
GE GE+E E K+ + E ++ ++ +
Sbjct: 90 GELNPGEDEVEGLKRLMTEILGRQDGVLQDWVI 122
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 26.1 bits (58), Expect = 3.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 1 MKMKKKRKEKEEKERKKEEQKKEVGEKKE 29
MK K + + E ++K E++ K +
Sbjct: 288 MKQMKAKLYEVEMQKKNAEKQAMEDNKSD 316
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 25.4 bits (56), Expect = 4.1
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 3 MKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENAD 52
M K ++ E + +E + E + E E ++ ++K A
Sbjct: 1 MSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQ 50
>2jes_A Portal protein; DNA translocation, molecular motor, VIRA protein,
viral protein; 3.4A {Bacteriophage SPP1}
Length = 503
Score = 25.9 bits (56), Expect = 4.3
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 6 KRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENA 51
R E+E + + + E + + EE+ E + +
Sbjct: 458 ARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAESGGAGQVS 503
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A
{Danio rerio} PDB: 2c2v_S 2oxq_C
Length = 179
Score = 25.3 bits (55), Expect = 4.4
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 4 KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENA 51
KKKR E++R +E + K E+E++ ++ ++ +N
Sbjct: 23 KKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNG 70
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 25.7 bits (57), Expect = 4.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 1 MKMKKKRKEKEEKERKKEEQKKEVGEKKE 29
+K+ K R + E+++++EE K GE +
Sbjct: 276 LKILKARLYELERKKREEELKALRGEVRP 304
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 25.3 bits (56), Expect = 4.9
Identities = 5/42 (11%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 4 KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKK--KKKVEE 43
++ K+ + V ++ + ++ + +KKV++
Sbjct: 235 TEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 25.4 bits (55), Expect = 5.3
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 2 KMKKKRKEKEEKERK---------KEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENAD 52
+KK KE E++R+ E+ KE K G++ E + E
Sbjct: 393 MCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEK 452
Query: 53 GNFEV 57
V
Sbjct: 453 PEGHV 457
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 25.3 bits (56), Expect = 5.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 5 KKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEE 43
K+RK+ E + + ++ V E E E E+ KKK++
Sbjct: 63 KRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex,
cytoplasm, nucleotidyltransferase, RNA- binding,
transferase, hydrolase; 2.40A {Escherichia coli E24377A}
PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Length = 549
Score = 25.2 bits (56), Expect = 6.2
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 8 KEKEEKERKKEEQKKEVGEKKEGEEEEEKKK------KKVEEK 44
+K+E+ + + K E E+E + +E+
Sbjct: 261 TDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKN 303
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 25.3 bits (54), Expect = 7.2
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 5 KKRKEKEEKERKKEEQKKEVGE---KKEGEEEEEKKKKKVEE 43
KR K EK + ++E+ K+ K E E K ++ ++
Sbjct: 20 IKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQD 61
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 25.0 bits (55), Expect = 7.5
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEE 43
M K + + + E ++ E++ + ++K+E
Sbjct: 164 PMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEA 205
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 24.6 bits (54), Expect = 7.7
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEE 35
+K K + +E ++ E + EEEEE
Sbjct: 102 MVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 25.2 bits (54), Expect = 8.0
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 1 MKMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNK 48
++ + KE EEK R+ E++K ++ E++ + + KK K
Sbjct: 369 KNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGK 416
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 24.8 bits (53), Expect = 8.7
Identities = 6/55 (10%), Positives = 22/55 (40%)
Query: 6 KRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGNFEVTLA 60
+R E + + +++E++++ EE + + A+ ++ +
Sbjct: 144 QRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVR 198
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 24.9 bits (53), Expect = 9.1
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 2 KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENAD 52
+K + E+KER +E K++ EK E + + K+++ +E
Sbjct: 509 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQ 559
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 24.8 bits (53), Expect = 9.2
Identities = 6/49 (12%), Positives = 19/49 (38%)
Query: 4 KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENAD 52
K +++ ++ + +++ + + KK + NK N +
Sbjct: 338 KIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEE 386
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly
mutant, permutation, permuted sequence, protein foldin
domain protein; 2.30A {Saccharomyces cerevisiae} SCOP:
c.86.1.1
Length = 416
Score = 24.8 bits (55), Expect = 9.2
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 18 EEQKKEVGEKKEGE----------EEEEKKKKKVEEKKNNKENADGNFEVTLATKATIY 66
E + V G EEE +K +K + F L++ A +Y
Sbjct: 30 PEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVY 88
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 24.9 bits (54), Expect = 9.3
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 2 KMKKKRKEKEEKERKKE----EQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGN 54
+++ + + +E+K E+ E K + E E K+ K N G+
Sbjct: 272 VCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAGS 328
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 24.2 bits (52), Expect = 9.9
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 3 MKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNK 48
+ KR +K E + + EQ ++ + ++ KK K K
Sbjct: 90 IMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTK 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.127 0.357
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,775,176
Number of extensions: 96279
Number of successful extensions: 1334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1099
Number of HSP's successfully gapped: 530
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.8 bits)