RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16246
         (118 letters)



>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
           pond snail (Lymnaea stagnalis) [TaxId: 6523]}
          Length = 208

 Score = 58.2 bits (140), Expect = 3e-12
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 53  GNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVP 112
              EV     A +   G V + P    + SC++          TC +K GSWT+   ++ 
Sbjct: 94  SKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESG-ATCRIKIGSWTHHSREIS 152


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
          disjunctional) {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 368

 Score = 33.3 bits (75), Expect = 0.004
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 7  RKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKK----VEEKKNN 47
          R+  EE  R  E+Q  E+   KE   +   ++K+    V + + N
Sbjct: 2  RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGN 46


>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
           vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]}
          Length = 306

 Score = 26.9 bits (59), Expect = 0.54
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 12/66 (18%)

Query: 51  ADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFP-FDEQTCVLK-------FG 102
           + G    T A  A  Y Q L+        +    I+   F  F+E     K       +G
Sbjct: 237 SGGGTAATPA-NARFYNQHLINHVGRGTPRHPGAIETYIFAMFNEN---QKDSGVEQNWG 292

Query: 103 SWTYDG 108
            +  + 
Sbjct: 293 LFYPNM 298


>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 268

 Score = 25.4 bits (55), Expect = 1.7
 Identities = 9/46 (19%), Positives = 18/46 (39%)

Query: 4   KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKE 49
           K  ++E EEK   ++ +     E         ++ K  +E  +  E
Sbjct: 216 KATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPE 261


>d1k3va_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
           protein {Porcine parvovirus [TaxId: 10796]}
          Length = 542

 Score = 24.9 bits (54), Expect = 2.8
 Identities = 5/25 (20%), Positives = 13/25 (52%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWK 74
           NAD   +  + T +  +++G + + 
Sbjct: 470 NADSPQQPRIITYSNFWWKGTLTFT 494


>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 332

 Score = 24.9 bits (54), Expect = 2.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 2   KMKKKRKEKEEKERKKEEQKKEVGEKK 28
           K  +KR+E EEK R+ +  K++  +++
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331


>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL,
           N-terminal domain {Pelobacter acidigallici [TaxId:
           35816]}
          Length = 195

 Score = 24.6 bits (52), Expect = 3.8
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 30  GEEEEEKKKKKVEEKKNNKENADGNFEVTLATKATIYYQGLVEWK 74
            +   E   KKVEE+       +      L TK  +YY+ L  ++
Sbjct: 157 LKTTPEAMAKKVEEEGLEVIKPE------LGTKPRVYYKNLYRFE 195


>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 159

 Score = 24.1 bits (52), Expect = 4.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 16  KKEEQKKEVGEKKEGEEEEEKKKKKVEEK 44
            KE+ ++ V E ++ + E+EK++ KV  K
Sbjct: 127 SKEDIERMVQEAEKYKAEDEKQRDKVSSK 155


>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
           DNA-binding fragment {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 223

 Score = 23.9 bits (52), Expect = 5.6
 Identities = 8/27 (29%), Positives = 19/27 (70%)

Query: 8   KEKEEKERKKEEQKKEVGEKKEGEEEE 34
            +KE+K++   ++KK++  ++E  EE+
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEED 129



 Score = 23.9 bits (52), Expect = 6.6
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 2   KMKKKRKEKEEKERKKEEQKKEVGE 26
           K +KK+   +EK++ + E++K   +
Sbjct: 105 KEQKKQLTSQEKKQIRLEREKFEED 129


>d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit
          {Clostridium cochlearium [TaxId: 1494]}
          Length = 483

 Score = 23.6 bits (51), Expect = 7.2
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 1  MKMKKKRKEKEE--KERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKN 46
          M++K K+   EE  K+R++  Q+   G K+   +E     KK+  +KN
Sbjct: 1  MELKNKKWTDEEFHKQREEVLQQWPTG-KEVDLQEAVDYLKKIPAEKN 47


>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
           N-terminal DNA-binding fragment {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 230

 Score = 23.5 bits (51), Expect = 7.6
 Identities = 6/27 (22%), Positives = 16/27 (59%)

Query: 8   KEKEEKERKKEEQKKEVGEKKEGEEEE 34
            + E +++  +E+K ++ E+ E   +E
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKLLKE 137


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.127    0.357 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 456,383
Number of extensions: 21313
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 129
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 47 (22.1 bits)