Query psy1625
Match_columns 130
No_of_seqs 111 out of 165
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 16:37:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06658 DUF1168: Protein of u 100.0 6.5E-39 1.4E-43 245.1 11.6 72 1-72 27-98 (142)
2 KOG4055|consensus 100.0 6.1E-34 1.3E-38 228.9 11.0 84 1-84 71-156 (213)
3 KOG4055|consensus 59.7 61 0.0013 27.1 7.6 19 63-81 129-147 (213)
4 smart00573 HSA domain in helic 52.4 68 0.0015 21.4 6.5 49 9-66 24-72 (73)
5 smart00467 GS GS motif. Aa app 47.0 9.1 0.0002 23.0 0.7 9 3-11 10-18 (30)
6 PF00580 UvrD-helicase: UvrD/R 43.8 7.8 0.00017 29.7 0.0 8 4-11 19-26 (315)
7 KOG3032|consensus 39.5 2E+02 0.0043 24.9 7.7 7 9-15 143-149 (264)
8 PF07529 HSA: HSA; InterPro: 38.1 1.1E+02 0.0024 19.7 6.3 48 10-66 25-72 (73)
9 PF07767 Nop53: Nop53 (60S rib 36.0 2.8E+02 0.0061 23.7 8.7 48 18-65 287-334 (387)
10 PF08515 TGF_beta_GS: Transfor 35.3 15 0.00032 22.1 0.3 9 3-11 11-19 (29)
11 PF08243 SPT2: SPT2 chromatin 29.1 1.9E+02 0.004 21.6 5.4 41 26-66 71-111 (116)
12 KOG2002|consensus 25.3 1.7E+02 0.0037 29.6 5.7 16 112-127 982-997 (1018)
13 PF04615 Utp14: Utp14 protein; 23.6 1.6E+02 0.0035 27.5 5.0 13 14-26 233-245 (735)
14 KOG4364|consensus 23.3 2.6E+02 0.0057 27.6 6.4 6 20-25 263-268 (811)
15 PF06098 Radial_spoke_3: Radia 22.3 5.1E+02 0.011 22.3 8.7 25 15-39 165-189 (291)
16 COG3171 Uncharacterized protei 22.3 56 0.0012 25.2 1.5 17 55-71 7-23 (119)
17 COG2519 GCD14 tRNA(1-methylade 21.8 43 0.00092 28.5 0.9 13 5-17 101-113 (256)
18 KOG2885|consensus 21.4 5.2E+02 0.011 23.0 7.4 54 15-68 264-317 (325)
19 KOG3794|consensus 20.5 1.4E+02 0.0029 27.7 3.8 32 39-70 213-244 (453)
No 1
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=100.00 E-value=6.5e-39 Score=245.12 Aligned_cols=72 Identities=63% Similarity=0.876 Sum_probs=71.3
Q ss_pred CCCCCCCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1625 1 MGSSAGAGSGEFHVYRHLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLK 72 (130)
Q Consensus 1 mGSSAGAGSGEFHvYR~~RRrE~eRl~~Me~~~~ke~e~~eF~~kree~~~~~eeKTaKkR~KR~KkK~kk~ 72 (130)
||||||||||||||||++|||||+||.+|+..|+++.++.+|+.++++++++++++|+|||+||+|+|++++
T Consensus 27 ~GSSAGAGSGeFHvYR~~RRrE~~Rl~~me~~~~~e~~~~eF~~kree~~~~~eekTaKkR~KR~KkK~kk~ 98 (142)
T PF06658_consen 27 QGSSAGAGSGEFHVYRASRRREYERLEYMEEEAKKEKEDEEFQRKREERKKEAEEKTAKKRAKRQKKKQKKK 98 (142)
T ss_pred cccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887
No 2
>KOG4055|consensus
Probab=100.00 E-value=6.1e-34 Score=228.93 Aligned_cols=84 Identities=57% Similarity=0.817 Sum_probs=75.2
Q ss_pred CCCCCCCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCccc
Q psy1625 1 MGSSAGAGSGEFHVYRHLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLK--NKPKKV 78 (130)
Q Consensus 1 mGSSAGAGSGEFHvYR~~RRrE~eRl~~Me~~~~ke~e~~eF~~kree~~~~~eeKTaKkR~KR~KkK~kk~--~~~Kk~ 78 (130)
||||||||||+||||||+|||||.||.+|+.++.++.++++|+.+++.+..+++++|+|+|+||+|+|++++ +++|+.
T Consensus 71 ~GSSAgaGSgeFHvYR~lRRrEq~Rl~~md~~a~Ke~~daefq~r~ek~~kaaEeKTaKKRaKRqk~Kq~akkkklakk~ 150 (213)
T KOG4055|consen 71 MGSSAGAGSGEFHVYRHLRRREQDRLDYMDADANKELLDAEFQIRLEKNQKAAEEKTAKKRAKRQKKKQKAKKKKLAKKT 150 (213)
T ss_pred ccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999554 244444
Q ss_pred cccccc
Q psy1625 79 KTEGKE 84 (130)
Q Consensus 79 K~~~~~ 84 (130)
..+..+
T Consensus 151 ~ee~~k 156 (213)
T KOG4055|consen 151 TEEEVK 156 (213)
T ss_pred chhhhc
Confidence 444333
No 3
>KOG4055|consensus
Probab=59.73 E-value=61 Score=27.11 Aligned_cols=19 Identities=42% Similarity=0.466 Sum_probs=7.5
Q ss_pred HHHHHHHhhhcCCcccccc
Q psy1625 63 KRLKRKQKLKNKPKKVKTE 81 (130)
Q Consensus 63 KR~KkK~kk~~~~Kk~K~~ 81 (130)
|+..|.++++-.+|+.+..
T Consensus 129 KKRaKRqk~Kq~akkkkla 147 (213)
T KOG4055|consen 129 KKRAKRQKKKQKAKKKKLA 147 (213)
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 3434444444233433333
No 4
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=52.45 E-value=68 Score=21.43 Aligned_cols=49 Identities=14% Similarity=0.292 Sum_probs=32.7
Q ss_pred CchhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1625 9 SGEFHVYRHLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLK 66 (130)
Q Consensus 9 SGEFHvYR~~RRrE~eRl~~Me~~~~ke~e~~eF~~kree~~~~~eeKTaKkR~KR~K 66 (130)
|.+|.-+|..++.=..+|..|= ..|..-.+.......+++++.|.++.+
T Consensus 24 ~~df~e~~k~k~~~a~kla~~v---------~~~h~~~e~~e~r~~er~ek~Rl~~l~ 72 (73)
T smart00573 24 AKDFKEEHKWKIAAAKKMAKAV---------MDYHQNKEKEEERREEKNEKRRLRKLA 72 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578888877777666666543 345555555556666888888887754
No 5
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=47.04 E-value=9.1 Score=23.01 Aligned_cols=9 Identities=44% Similarity=0.903 Sum_probs=7.5
Q ss_pred CCCCCCCch
Q psy1625 3 SSAGAGSGE 11 (130)
Q Consensus 3 SSAGAGSGE 11 (130)
+|+|.|||-
T Consensus 10 ~tSGSGSG~ 18 (30)
T smart00467 10 TTSGSGSGL 18 (30)
T ss_pred ccCCCCCCc
Confidence 478999996
No 6
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=43.78 E-value=7.8 Score=29.70 Aligned_cols=8 Identities=75% Similarity=1.203 Sum_probs=4.2
Q ss_pred CCCCCCch
Q psy1625 4 SAGAGSGE 11 (130)
Q Consensus 4 SAGAGSGE 11 (130)
.||||||=
T Consensus 19 ~a~AGSGK 26 (315)
T PF00580_consen 19 NAGAGSGK 26 (315)
T ss_dssp EE-TTSSH
T ss_pred EeCCCCCc
Confidence 36677764
No 7
>KOG3032|consensus
Probab=39.50 E-value=2e+02 Score=24.93 Aligned_cols=7 Identities=29% Similarity=0.254 Sum_probs=3.8
Q ss_pred CchhHHH
Q psy1625 9 SGEFHVY 15 (130)
Q Consensus 9 SGEFHvY 15 (130)
-|||.--
T Consensus 143 egFFDdk 149 (264)
T KOG3032|consen 143 EGFFDDK 149 (264)
T ss_pred ccccCch
Confidence 4666543
No 8
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=38.09 E-value=1.1e+02 Score=19.65 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=30.0
Q ss_pred chhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1625 10 GEFHVYRHLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLK 66 (130)
Q Consensus 10 GEFHvYR~~RRrE~eRl~~Me~~~~ke~e~~eF~~kree~~~~~eeKTaKkR~KR~K 66 (130)
-+|..+|..++.=..+|. ..-..|....+.......+++++.|.+.++
T Consensus 25 ~df~~e~k~k~~~a~k~a---------~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~ 72 (73)
T PF07529_consen 25 KDFKEERKWKRARAKKLA---------KAVAQYHKNREKEEQKRIEREEKQRLRALK 72 (73)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 456666666654444444 334566666666667777778888877654
No 9
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=35.99 E-value=2.8e+02 Score=23.75 Aligned_cols=48 Identities=25% Similarity=0.368 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1625 18 LRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRL 65 (130)
Q Consensus 18 ~RRrE~eRl~~Me~~~~ke~e~~eF~~kree~~~~~eeKTaKkR~KR~ 65 (130)
.|+++..|+..+....++...+..=-..+...+...+...+.++..|.
T Consensus 287 ~r~k~~~~~~~~~k~~k~~~~~i~~l~~i~~ei~~~e~~~~~~~~~r~ 334 (387)
T PF07767_consen 287 KRRKEEERKEKERKKEKKKIKQIDRLKEIAKEIEKEEEEREKRRERRK 334 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333322222222233344444444444454444
No 10
>PF08515 TGF_beta_GS: Transforming growth factor beta type I GS-motif; InterPro: IPR003605 Transforming growth factor beta (TGF-beta) is a member of a large family of secreted growth factors of central importance in eukaryotic development and homeostasis. Members of this family, which includes the activins, inhibins and bone morphogenic proteins (BMPs), bind to receptors that consist of two transmembrane serine/threonine (Ser/Thr) kinases called the type I and type II receptors. Type II activates Type I upon formation of the ligand receptor complex by multiply phosphorylating the GS domain, a short (~30 residues), highly conserved regulatory sequence just N-terminal to the kinase domain on the cytoplasmic side of the receptor. The GS domain is found only in the type I receptor family and is named for the TTSGSGSG sequence at its core. At least three, and perhaps four to five of the serines and threonines in the GS domain, must be phosphorylated to fully activate TbetaR-1 []. The GS domain forms a helix-loop-helix structure in which the sites of activating phosphorylation are situated in a loop known as the GS loop. One key role for phosphorylation is to block the adoption of an inactivating configuration by the GS domain [].; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0016020 membrane; PDB: 3MY0_H 3Q4U_B 3H9R_A 3MTF_B 3OOM_A 3KCF_C 3FAA_A 1IAS_A 1PY5_A 2X7O_C ....
Probab=35.28 E-value=15 Score=22.06 Aligned_cols=9 Identities=56% Similarity=0.929 Sum_probs=6.9
Q ss_pred CCCCCCCch
Q psy1625 3 SSAGAGSGE 11 (130)
Q Consensus 3 SSAGAGSGE 11 (130)
+++|+|||-
T Consensus 11 ~tSGSGSGl 19 (29)
T PF08515_consen 11 STSGSGSGL 19 (29)
T ss_dssp HCCTSSSSS
T ss_pred ccCCCCCCc
Confidence 578889884
No 11
>PF08243 SPT2: SPT2 chromatin protein; InterPro: IPR013256 This entry includes the Saccharomyces cerevisiae (Baker's yeast) protein SPT2 which is a chromatin protein involved in transcriptional regulation []. These proteins shows conservation of several domains across numerous species, including having a cluster of positively charged amino acids. This cluster probably functions in the binding properties of the proteins []. Sin1p/Spt2p probably modulates the local chromatin structure by binding two strands of double-stranded DNA at their crossover point. Sin1p/Spt2p has sequence similarity to HMG1 and serves as a negative transcriptional regulator of a small family of genes that are activated by the SWI/SNF chromatin-remodelling complex. It is also involved in maintaining the integrity of chromatin during transcription elongation. Sin1p/Spt2 is required for, and is directly involved in, the efficient recruitment of the mRNA cleavage/polyadenylation complex []. Spt2 is also involved in regulating levels of histone H3 over transcribed regions [].
Probab=29.09 E-value=1.9e+02 Score=21.59 Aligned_cols=41 Identities=7% Similarity=0.165 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1625 26 QKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLK 66 (130)
Q Consensus 26 l~~Me~~~~ke~e~~eF~~kree~~~~~eeKTaKkR~KR~K 66 (130)
+.-|++-+..-...+..-.++....-..+..-.+..+++++
T Consensus 71 ~~dMEA~~~~I~~EE~rS~r~A~~ED~~e~~~e~~~~~~K~ 111 (116)
T PF08243_consen 71 SRDMEASFADIEKEEKRSARIARLEDEREERREEEEEREKR 111 (116)
T ss_pred hHhhhcCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 35688877666665555555555555555555444444433
No 12
>KOG2002|consensus
Probab=25.28 E-value=1.7e+02 Score=29.64 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=7.9
Q ss_pred hhhhhhhhhhhccccc
Q psy1625 112 EVSERKTEIEQDENSV 127 (130)
Q Consensus 112 ~~~~~~~~~~~~~~~~ 127 (130)
...+.-..|++|..++
T Consensus 982 ~~~~~~~~~e~~~d~~ 997 (1018)
T KOG2002|consen 982 ASEESDRPIESDSDSD 997 (1018)
T ss_pred hhhccCCccccccccC
Confidence 3333344466666544
No 13
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=23.61 E-value=1.6e+02 Score=27.53 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=10.4
Q ss_pred HHhhhhHHHHHHH
Q psy1625 14 VYRHLRRKEYARQ 26 (130)
Q Consensus 14 vYR~~RRrE~eRl 26 (130)
.||.+.+++-.|.
T Consensus 233 ~yhri~kk~k~k~ 245 (735)
T PF04615_consen 233 TYHRILKKEKEKE 245 (735)
T ss_pred HHHHHHHHHHHHh
Confidence 5888888888883
No 14
>KOG4364|consensus
Probab=23.32 E-value=2.6e+02 Score=27.61 Aligned_cols=6 Identities=67% Similarity=0.800 Sum_probs=2.6
Q ss_pred HHHHHH
Q psy1625 20 RKEYAR 25 (130)
Q Consensus 20 RrE~eR 25 (130)
|.|++|
T Consensus 263 R~erEr 268 (811)
T KOG4364|consen 263 RKERER 268 (811)
T ss_pred HHHHHH
Confidence 334444
No 15
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=22.31 E-value=5.1e+02 Score=22.30 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=12.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Q psy1625 15 YRHLRRKEYARQKHIQEKSEKELLD 39 (130)
Q Consensus 15 YR~~RRrE~eRl~~Me~~~~ke~e~ 39 (130)
|-+.|..|+.-+..|++......+.
T Consensus 165 fe~~R~aEl~e~qrlE~~e~r~~eE 189 (291)
T PF06098_consen 165 FEELRNAELAEVQRLEEAEKRRREE 189 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554443333
No 16
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.31 E-value=56 Score=25.21 Aligned_cols=17 Identities=47% Similarity=0.767 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy1625 55 DKTAKKRAKRLKRKQKL 71 (130)
Q Consensus 55 eKTaKkR~KR~KkK~kk 71 (130)
++.+|||.+|++||..-
T Consensus 7 ~~m~~~rnRRlrKKlhl 23 (119)
T COG3171 7 EKMAKNRNRRLRKKLHL 23 (119)
T ss_pred HHHhhhhhHHHHhhccH
Confidence 68899999999998743
No 17
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=21.82 E-value=43 Score=28.53 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=11.0
Q ss_pred CCCCCchhHHHhh
Q psy1625 5 AGAGSGEFHVYRH 17 (130)
Q Consensus 5 AGAGSGEFHvYR~ 17 (130)
||.|||.+-.|=.
T Consensus 101 AGtGSG~lt~~La 113 (256)
T COG2519 101 AGTGSGALTAYLA 113 (256)
T ss_pred cccCchHHHHHHH
Confidence 8999999988844
No 18
>KOG2885|consensus
Probab=21.42 E-value=5.2e+02 Score=23.01 Aligned_cols=54 Identities=28% Similarity=0.371 Sum_probs=39.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1625 15 YRHLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRK 68 (130)
Q Consensus 15 YR~~RRrE~eRl~~Me~~~~ke~e~~eF~~kree~~~~~eeKTaKkR~KR~KkK 68 (130)
-.++++++-.+..-...+.........|...|.......-.+-.+.+.+|...+
T Consensus 264 kkaIkkK~k~K~k~~~kW~eR~d~~qk~~~~RQ~kReeNl~kRs~~~K~RK~~k 317 (325)
T KOG2885|consen 264 KKAIKKKEKEKKKSKRKWKERKDKVQKFKQERQQKREENLQKRSKKKKKRKLKK 317 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357888888888888888888888888888888777776666555544444443
No 19
>KOG3794|consensus
Probab=20.54 E-value=1.4e+02 Score=27.66 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1625 39 DEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQK 70 (130)
Q Consensus 39 ~~eF~~kree~~~~~eeKTaKkR~KR~KkK~k 70 (130)
..+|....-+...+---+...+..+.++||.+
T Consensus 213 ~~~f~sS~tek~KeKl~kKldK~e~KKrKKek 244 (453)
T KOG3794|consen 213 ELEFSSSLTEKQKEKLLKKLDKLEKKKRKKEK 244 (453)
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35666666544444333333333333333333
Done!