Query psy1625
Match_columns 130
No_of_seqs 111 out of 165
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 16:38:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dae_A KIAA0733 protein; mitog 35.9 20 0.0007 24.6 2.1 20 2-21 1-20 (75)
2 2db7_A Hairy/enhancer-OF-split 24.9 15 0.00053 23.9 0.0 11 2-13 1-11 (64)
3 1mbm_A NSP4 proteinase, chymot 21.1 12 0.00041 29.7 -1.3 12 1-12 10-21 (198)
4 4h62_V Mediator of RNA polymer 18.1 26 0.00088 20.3 0.0 6 6-11 1-6 (31)
5 3tuf_A Stage III sporulation p 17.9 83 0.0028 24.7 2.9 20 5-24 78-97 (197)
6 4dey_B Voltage-dependent L-typ 16.0 52 0.0018 23.8 1.2 24 8-31 1-26 (106)
7 2rmf_A Urocortin, HUCN1; CRF l 15.5 1.7E+02 0.0057 17.9 3.2 16 12-29 11-26 (40)
8 1y14_A B32, RPB4, DNA-directed 14.3 74 0.0025 24.8 1.7 17 106-122 82-98 (187)
9 1w36_B RECB, exodeoxyribonucle 13.0 49 0.0017 30.7 0.5 7 4-10 22-28 (1180)
10 3iz5_q 60S ribosomal protein L 12.5 1.3E+02 0.0043 16.8 1.9 13 59-71 7-19 (25)
No 1
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.87 E-value=20 Score=24.65 Aligned_cols=20 Identities=45% Similarity=0.733 Sum_probs=18.2
Q ss_pred CCCCCCCCchhHHHhhhhHH
Q psy1625 2 GSSAGAGSGEFHVYRHLRRK 21 (130)
Q Consensus 2 GSSAGAGSGEFHvYR~~RRr 21 (130)
|||-|.+-++|||+-.+|++
T Consensus 1 ~~~~~~~q~d~qvfheLkQr 20 (75)
T 2dae_A 1 GSSGSSGQIDFQVLHDLRQK 20 (75)
T ss_dssp CCCSCCCCCCHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHHHHh
Confidence 89999999999999999875
No 2
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=24.85 E-value=15 Score=23.91 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=5.0
Q ss_pred CCCCCCCCchhH
Q psy1625 2 GSSAGAGSGEFH 13 (130)
Q Consensus 2 GSSAGAGSGEFH 13 (130)
||||| |.|.|.
T Consensus 1 ~~~~~-~~~~~d 11 (64)
T 2db7_A 1 GSSGS-SGGYFD 11 (64)
T ss_dssp ------CTTCCC
T ss_pred CCCCC-CCcccC
Confidence 66666 888886
No 3
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3
Probab=21.09 E-value=12 Score=29.71 Aligned_cols=12 Identities=50% Similarity=0.399 Sum_probs=10.5
Q ss_pred CCCCCCCCCchh
Q psy1625 1 MGSSAGAGSGEF 12 (130)
Q Consensus 1 mGSSAGAGSGEF 12 (130)
+||+.|.|||||
T Consensus 10 ~g~~~G~GsgF~ 21 (198)
T 1mbm_A 10 AGSSYGTGSVWT 21 (198)
T ss_dssp ESSSEEEEEEEE
T ss_pred ecccCCccceEE
Confidence 489999999987
No 4
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=18.15 E-value=26 Score=20.33 Aligned_cols=6 Identities=83% Similarity=1.248 Sum_probs=0.0
Q ss_pred CCCCch
Q psy1625 6 GAGSGE 11 (130)
Q Consensus 6 GAGSGE 11 (130)
|||||-
T Consensus 1 gagsgv 6 (31)
T 4h62_V 1 GAGSGV 6 (31)
T ss_dssp ------
T ss_pred CCCCcc
Confidence 677773
No 5
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=17.86 E-value=83 Score=24.68 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=12.6
Q ss_pred CCCCCchhHHHhhhhHHHHH
Q psy1625 5 AGAGSGEFHVYRHLRRKEYA 24 (130)
Q Consensus 5 AGAGSGEFHvYR~~RRrE~e 24 (130)
+.+|+++|--||..|-....
T Consensus 78 ~~s~~~yFae~RL~REq~Rs 97 (197)
T 3tuf_A 78 ETADDDLFTTYRLDLEDARS 97 (197)
T ss_dssp ----CCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 34788999999998765443
No 6
>4dey_B Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 1vyt_E
Probab=16.02 E-value=52 Score=23.81 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=7.1
Q ss_pred CCchhHHH--hhhhHHHHHHHHHHHH
Q psy1625 8 GSGEFHVY--RHLRRKEYARQKHIQE 31 (130)
Q Consensus 8 GSGEFHvY--R~~RRrE~eRl~~Me~ 31 (130)
|||||--= |...|.++..|+.+..
T Consensus 1 ~SGEFsKEREk~~~R~~f~Klre~qq 26 (106)
T 4dey_B 1 GSGEFSKEREKAKARGDFQKLREKQQ 26 (106)
T ss_dssp ---------------CCHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHH
Confidence 79999764 4566777777765543
No 7
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=15.55 E-value=1.7e+02 Score=17.92 Aligned_cols=16 Identities=44% Similarity=0.650 Sum_probs=9.5
Q ss_pred hHHHhhhhHHHHHHHHHH
Q psy1625 12 FHVYRHLRRKEYARQKHI 29 (130)
Q Consensus 12 FHvYR~~RRrE~eRl~~M 29 (130)
||+.|.+ -||.|.+.+
T Consensus 11 FHlLR~m--iemar~e~~ 26 (40)
T 2rmf_A 11 FHLLRTL--LELARTQSQ 26 (40)
T ss_dssp HHHHHHH--HHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHH
Confidence 8888765 355554433
No 8
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=14.29 E-value=74 Score=24.80 Aligned_cols=17 Identities=18% Similarity=0.263 Sum_probs=9.0
Q ss_pred cccchhhhhhhhhhhhh
Q psy1625 106 NKEGNEEVSERKTEIEQ 122 (130)
Q Consensus 106 ~~~~~~~~~~~~~~~~~ 122 (130)
.+.-+.+.|+-+.-+++
T Consensus 82 ~~~~~~~i~~v~~lle~ 98 (187)
T 1y14_A 82 SETREKELESIDVLLEQ 98 (187)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHhh
Confidence 34455566777665553
No 9
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=13.02 E-value=49 Score=30.70 Aligned_cols=7 Identities=57% Similarity=0.957 Sum_probs=0.0
Q ss_pred CCCCCCc
Q psy1625 4 SAGAGSG 10 (130)
Q Consensus 4 SAGAGSG 10 (130)
+||||||
T Consensus 22 ~AsAGSG 28 (1180)
T 1w36_B 22 EASAGTG 28 (1180)
T ss_dssp ECCTTSC
T ss_pred EECCCCC
No 10
>3iz5_q 60S ribosomal protein L41 (L41E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_q
Probab=12.49 E-value=1.3e+02 Score=16.78 Aligned_cols=13 Identities=62% Similarity=0.897 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhh
Q psy1625 59 KKRAKRLKRKQKL 71 (130)
Q Consensus 59 KkR~KR~KkK~kk 71 (130)
|+|..|.|+|.++
T Consensus 7 KKR~rRlkrkRrk 19 (25)
T 3iz5_q 7 KKRMRRLKRKRRK 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Done!