Query psy1625
Match_columns 130
No_of_seqs 111 out of 165
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 16:38:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1625.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1625hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w36b1 c.37.1.19 (B:1-485) Ex 60.4 1 7.4E-05 33.1 0.5 11 4-14 22-32 (485)
2 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 25.6 7.9 0.00057 29.4 0.3 10 5-14 31-40 (623)
3 d1uaaa1 c.37.1.19 (A:2-307) DE 20.8 13 0.00097 25.3 0.7 11 4-14 20-30 (306)
4 d1pjra1 c.37.1.19 (A:1-318) DE 17.0 14 0.001 25.7 0.2 12 4-15 30-41 (318)
5 d1wjma_ b.55.1.1 (A:) beta-spe 12.7 20 0.0015 21.4 -0.1 12 2-13 1-15 (123)
6 d2rkya2 g.27.1.1 (A:198-241) F 11.7 18 0.0013 21.0 -0.5 9 5-13 33-41 (44)
7 d1qe3a_ c.69.1.1 (A:) Thermoph 9.6 10 0.00075 28.4 -2.7 17 1-17 185-201 (483)
8 d2cg7a2 g.27.1.1 (A:62-108) Fi 9.6 23 0.0017 20.6 -0.5 9 5-13 34-42 (47)
9 d2h7ca1 c.69.1.1 (A:1021-1553) 9.1 14 0.001 27.8 -2.2 15 1-15 198-212 (532)
10 d2ih2a1 c.66.1.27 (A:21-243) D 8.8 45 0.0033 21.6 0.7 8 6-13 27-34 (223)
No 1
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=60.43 E-value=1 Score=33.07 Aligned_cols=11 Identities=36% Similarity=0.576 Sum_probs=8.8
Q ss_pred CCCCCCchhHH
Q psy1625 4 SAGAGSGEFHV 14 (130)
Q Consensus 4 SAGAGSGEFHv 14 (130)
+||||||==++
T Consensus 22 ~A~AGsGKT~~ 32 (485)
T d1w36b1 22 EASAGTGKTFT 32 (485)
T ss_dssp ECCTTSCHHHH
T ss_pred EEcCchHHHHH
Confidence 69999997653
No 2
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=25.61 E-value=7.9 Score=29.37 Aligned_cols=10 Identities=70% Similarity=0.993 Sum_probs=6.6
Q ss_pred CCCCCchhHH
Q psy1625 5 AGAGSGEFHV 14 (130)
Q Consensus 5 AGAGSGEFHv 14 (130)
||||||==++
T Consensus 31 A~AGSGKT~~ 40 (623)
T g1qhh.1 31 AGAGSGKTRV 40 (623)
T ss_dssp ECTTSCHHHH
T ss_pred EeCchHHHHH
Confidence 7788886443
No 3
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=20.80 E-value=13 Score=25.34 Aligned_cols=11 Identities=64% Similarity=0.839 Sum_probs=8.2
Q ss_pred CCCCCCchhHH
Q psy1625 4 SAGAGSGEFHV 14 (130)
Q Consensus 4 SAGAGSGEFHv 14 (130)
.||||||==+|
T Consensus 20 ~g~aGTGKTt~ 30 (306)
T d1uaaa1 20 LAGAGSGKTRV 30 (306)
T ss_dssp CCCTTSCHHHH
T ss_pred EeeCCccHHHH
Confidence 47899997664
No 4
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=17.03 E-value=14 Score=25.67 Aligned_cols=12 Identities=58% Similarity=0.789 Sum_probs=8.5
Q ss_pred CCCCCCchhHHH
Q psy1625 4 SAGAGSGEFHVY 15 (130)
Q Consensus 4 SAGAGSGEFHvY 15 (130)
+||||||==+|=
T Consensus 30 ~g~aGSGKTt~l 41 (318)
T d1pjra1 30 MAGAGSGKTRVL 41 (318)
T ss_dssp EECTTSCHHHHH
T ss_pred EecCCccHHHHH
Confidence 478888876653
No 5
>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}
Probab=12.68 E-value=20 Score=21.44 Aligned_cols=12 Identities=42% Similarity=0.698 Sum_probs=5.8
Q ss_pred CCCCCCC---CchhH
Q psy1625 2 GSSAGAG---SGEFH 13 (130)
Q Consensus 2 GSSAGAG---SGEFH 13 (130)
|||+.+| .|.+|
T Consensus 1 g~s~~~g~~~eG~L~ 15 (123)
T d1wjma_ 1 GSSGSSGEQMEGMLC 15 (123)
T ss_dssp CCSCCCCCCEEEEEE
T ss_pred CCCCCCCCeeEEEEE
Confidence 4555555 44444
No 6
>d2rkya2 g.27.1.1 (A:198-241) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.68 E-value=18 Score=21.02 Aligned_cols=9 Identities=44% Similarity=1.025 Sum_probs=7.7
Q ss_pred CCCCCchhH
Q psy1625 5 AGAGSGEFH 13 (130)
Q Consensus 5 AGAGSGEFH 13 (130)
.|-|+|+|+
T Consensus 33 ~G~G~Ge~~ 41 (44)
T d2rkya2 33 TGNGRGEWK 41 (44)
T ss_dssp EETTTTEEE
T ss_pred eCCcceeEE
Confidence 588999996
No 7
>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]}
Probab=9.65 E-value=10 Score=28.42 Aligned_cols=17 Identities=29% Similarity=0.137 Sum_probs=12.2
Q ss_pred CCCCCCCCCchhHHHhh
Q psy1625 1 MGSSAGAGSGEFHVYRH 17 (130)
Q Consensus 1 mGSSAGAGSGEFHvYR~ 17 (130)
||-||||.|--+|++-.
T Consensus 185 ~G~SAGa~sv~~~l~sp 201 (483)
T d1qe3a_ 185 FGESAGGMSIAALLAMP 201 (483)
T ss_dssp EEETHHHHHHHHHTTCG
T ss_pred eccccccchhhhhhccc
Confidence 57788888777777654
No 8
>d2cg7a2 g.27.1.1 (A:62-108) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.59 E-value=23 Score=20.65 Aligned_cols=9 Identities=44% Similarity=0.829 Sum_probs=7.4
Q ss_pred CCCCCchhH
Q psy1625 5 AGAGSGEFH 13 (130)
Q Consensus 5 AGAGSGEFH 13 (130)
.|-|+|+|+
T Consensus 34 ~G~G~Ge~~ 42 (47)
T d2cg7a2 34 IGAGRGRIS 42 (47)
T ss_dssp EETTTTEEE
T ss_pred cCCCcEeEE
Confidence 488999986
No 9
>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.05 E-value=14 Score=27.80 Aligned_cols=15 Identities=40% Similarity=0.446 Sum_probs=9.5
Q ss_pred CCCCCCCCCchhHHH
Q psy1625 1 MGSSAGAGSGEFHVY 15 (130)
Q Consensus 1 mGSSAGAGSGEFHvY 15 (130)
||-||||.|=-+|+.
T Consensus 198 ~G~SAGa~sv~~~l~ 212 (532)
T d2h7ca1 198 FGESAGGESVSVLVL 212 (532)
T ss_dssp EEETHHHHHHHHHHH
T ss_pred eccccccchHHHHHh
Confidence 466777766666654
No 10
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=8.81 E-value=45 Score=21.60 Aligned_cols=8 Identities=25% Similarity=0.522 Sum_probs=6.0
Q ss_pred CCCCchhH
Q psy1625 6 GAGSGEFH 13 (130)
Q Consensus 6 GAGSGEFH 13 (130)
|||||-|=
T Consensus 27 ~~G~G~fl 34 (223)
T d2ih2a1 27 ACAHGPFL 34 (223)
T ss_dssp TCTTCHHH
T ss_pred CCchHHHH
Confidence 68888773
Done!